# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:25 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:26 PDT 2018)
#        host: kadru
#        when: Mon Jun 11 07:51:09 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.205 C 0.297 G 0.295 T 0.203


MOTIF CAGCDGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CAGCDGG    CCHGCTG        280         87   7.7e-035   2.2e-030
#          CAGCAGG    CCTGCTG        211         49   1.7e-031   4.7e-027
#          CAGCTGG    CCAGCTG         73         34   5.1e-005   1.4e+000
#          CAGCGGG    CCCGCTG         32         10   3.8e-004   1.1e+001

letter-probability matrix: alength= 4 w= 7 nsites= 388 E= 2.2e-030
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.695876 0.000000 0.087629 0.216495
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF RTAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       RTAAA      TTTAY        121         45   9.5e-011   2.6e-006
#            ATAAA      TTTAT         71         23   1.3e-007   3.5e-003
#            GTAAA      TTTAC         57         24   9.7e-005   2.7e+000

letter-probability matrix: alength= 4 w= 5 nsites= 136 E= 2.6e-006
0.566176 0.000000 0.433824 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGGRAGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGGRAGC   GCTYCCTG         54          9   1.3e-009   3.4e-005
#         CAGGGAGC   GCTCCCTG         35          6   1.7e-006   4.6e-002
#         CAGGAAGC   GCTTCCTG         20          3   2.2e-004   5.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 3.4e-005
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.354839 0.000000 0.645161 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF RGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       RGGAA      TTCCY        290        200   8.1e-008   2.2e-003
#            AGGAA      TTCCT        151         87   2.3e-006   6.1e-002
#            GGGAA      TTCCC        182        135   1.3e-003   3.4e+001

letter-probability matrix: alength= 4 w= 5 nsites= 394 E= 2.2e-003
0.456853 0.000000 0.543147 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGCRGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGCRGGA   TCCYGCAG         38          6   3.1e-007   7.8e-003
#         CTGCAGGA   TCCTGCAG         28          6   8.0e-005   2.0e+000
#         CTGCGGGA   TCCCGCAG         10          0   9.4e-004   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 7.8e-003
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.767442 0.000000 0.232558 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCCAKGG DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCCAKGG    CCMTGGG        103         48   1.0e-006   2.7e-002
#          CCCAGGG    CCCTGGG         75         38   1.7e-004   4.3e+000
#          CCCATGG    CCATGGG         32         11   7.9e-004   2.0e+001

letter-probability matrix: alength= 4 w= 7 nsites= 114 E= 2.7e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.710526 0.289474
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 30.40 seconds