# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP69B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP69B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP69B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP69B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:04 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP69B.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:05 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:44:11 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.190 C 0.309 G 0.312 T 0.189


MOTIF GGNCCCAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGNCCCAC   GTGGGNCC        353         25   1.0e-104   3.2e-100
#         GGGCCCAC   GTGGGCCC        197          5   4.0e-060   1.2e-055
#         GGCCCCAC   GTGGGGCC        134          9   3.3e-033   1.0e-028
#         GGACCCAC   GTGGGTCC         48          7   3.2e-009   9.8e-005
#         GGTCCCAC   GTGGGACC         29          4   4.2e-006   1.3e-001

letter-probability matrix: alength= 4 w= 8 nsites= 378 E= 3.2e-100
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.116402 0.333333 0.481481 0.068783
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTTWAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CTTWAA     TTWAAG        100         19   4.5e-016   1.3e-011
#           CTTAAA     TTTAAG         68          7   1.1e-014   3.4e-010
#           CTTTAA     TTAAAG         79         15   9.2e-013   2.8e-008

letter-probability matrix: alength= 4 w= 6 nsites= 114 E= 1.3e-011
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.438596 0.000000 0.000000 0.561404
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF RTGAGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGAGTCA   TGACTCAY         24          0   4.7e-008   1.4e-003
#         GTGAGTCA   TGACTCAC         16          0   1.4e-005   4.1e-001
#         ATGAGTCA   TGACTCAT          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.4e-003
0.320000 0.000000 0.680000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 76.76 seconds