# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP64.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP64.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP64.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP64.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:09 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP64.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:11 PST 2017) # host: wotan # when: Mon Dec 18 16:12:23 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.401 C 0.113 G 0.112 T 0.374 MOTIF AATAAATA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AATAAATA TATTTATT 597 130 3.2e-206 6.7e-202 # AATAAATA TATTTATT 597 130 3.2e-206 6.7e-202 letter-probability matrix: alength= 4 w= 8 nsites= 3043 E= 6.7e-202 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWC GWCTC 408 32 1.4e-126 3.0e-122 # GAGAC GTCTC 352 14 1.5e-116 3.1e-112 # GAGTC GACTC 249 19 5.3e-065 1.1e-060 letter-probability matrix: alength= 4 w= 5 nsites= 605 E= 3.0e-122 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.671074 0.000000 0.000000 0.328926 0.000000 1.000000 0.000000 0.000000 MOTIF ASAGWG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ASAGWG CWCTST 242 19 2.8e-062 5.5e-058 # ACAGAG CTCTGT 187 7 7.8e-054 1.5e-049 # AGAGTG CACTCT 64 4 6.1e-016 1.2e-011 # ACAGTG CACTGT 23 1 1.2e-006 2.4e-002 # AGAGAG CTCTCT 22 7 3.7e-003 7.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 276 E= 5.5e-058 1.000000 0.000000 0.000000 0.000000 0.000000 0.699275 0.300725 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.710145 0.000000 0.000000 0.289855 0.000000 0.000000 1.000000 0.000000 MOTIF CATCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CATCTC GAGATG 120 7 1.5e-030 2.8e-026 # CATCTC GAGATG 120 7 1.5e-030 2.8e-026 letter-probability matrix: alength= 4 w= 6 nsites= 121 E= 2.8e-026 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CASVC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CASVC GBSTG 190 69 6.2e-018 1.2e-013 # CACCC GGGTG 58 12 4.5e-009 8.3e-005 # CAGGC GCCTG 59 20 3.3e-006 6.2e-002 # CAGCC GGCTG 40 12 4.5e-005 8.5e-001 # CAGAC GTCTG 37 11 8.3e-005 1.6e+000 # CACGC GCGTG 18 5 5.0e-003 9.2e+001 # CACAC GTGTG 33 15 5.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 5 nsites= 234 E= 1.2e-013 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.478632 0.521368 0.000000 0.337607 0.401709 0.260684 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGAGCRA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGAGCRA TYGCTCT 60 5 6.6e-014 1.1e-009 # AGAGCAA TTGCTCT 36 3 1.1e-008 2.0e-004 # AGAGCGA TCGCTCT 24 2 4.3e-006 7.4e-002 letter-probability matrix: alength= 4 w= 7 nsites= 60 E= 1.1e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCAACA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCAACA TGTTGC 44 4 3.8e-010 6.6e-006 # GCAACA TGTTGC 44 4 3.8e-010 6.6e-006 letter-probability matrix: alength= 4 w= 6 nsites= 44 E= 6.6e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGTS DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CTGTS SACAG 71 19 4.7e-009 7.9e-005 # CTGTC GACAG 37 8 5.4e-006 9.1e-002 # CTGTG CACAG 36 11 1.3e-004 2.2e+000 letter-probability matrix: alength= 4 w= 5 nsites= 74 E= 7.9e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 MOTIF GAAACTC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GAAACTC GAGTTTC 21 0 4.0e-007 6.6e-003 # GAAACTC GAGTTTC 21 0 4.0e-007 6.6e-003 letter-probability matrix: alength= 4 w= 7 nsites= 22 E= 6.6e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 92.17 seconds