******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP41.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:40494158-40494658 1.0000 100 chr18:50967463-50967963 1.0000 100 chr5:10182761-10183261 1.0000 100 chr8:19767167-19767667 1.0000 100 chr21:45437844-45438344 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1.0000 100 chr19:58380517-58381017 1.0000 100 chr5:49660783-49661283 1.0000 100 chr12:49130960-49131460 1.0000 100 chr5:40835022-40835522 1.0000 100 chr13:113208608-11320910 1.0000 100 chr16:56932155-56932655 1.0000 100 chr4:4541835-4542335 1.0000 100 chr16:690171-690671 1.0000 100 chr12:2255740-2256240 1.0000 100 chr7:102572205-102572705 1.0000 100 chr5:176591614-176592114 1.0000 100 chr15:75368400-75368900 1.0000 100 chr1:173867575-173868075 1.0000 100 chr1:161097509-161098009 1.0000 100 chr10:41887028-41887528 1.0000 100 chr10:17229185-17229685 1.0000 100 chr6:32972035-32972535 1.0000 100 chr2:74198504-74199004 1.0000 100 chr15:68278383-68278883 1.0000 100 chr3:134795166-134795666 1.0000 100 chr5:3323694-3324194 1.0000 100 chr19:37594311-37594811 1.0000 100 chr19:36604662-36605162 1.0000 100 chr11:68903668-68904168 1.0000 100 chr1_KI270709v1_random:7 1.0000 100 chr10:42079437-42079937 1.0000 100 chr19:49929086-49929586 1.0000 100 chr19:37655826-37656326 1.0000 100 chr2:38750960-38751460 1.0000 100 chr21:45332367-45332867 1.0000 100 chr18:80033421-80033921 1.0000 100 chr21:39313584-39314084 1.0000 100 chr6:131628067-131628567 1.0000 100 chr9:133030737-133031237 1.0000 100 chr12:389112-389612 1.0000 100 chr19:35947357-35947857 1.0000 100 chr7:155918673-155919173 1.0000 100 chr1:40257933-40258433 1.0000 100 chr20:52972214-52972714 1.0000 100 chr5:173327961-173328461 1.0000 100 chr15:65610824-65611324 1.0000 100 chr16:57628748-57629248 1.0000 100 chr1:228457428-228457928 1.0000 100 chr17:63600656-63601156 1.0000 100 chr9:137241105-137241605 1.0000 100 chr1:212791633-212792133 1.0000 100 chr6:170398646-170399146 1.0000 100 chr1:28648545-28649045 1.0000 100 chr15:89893817-89894317 1.0000 100 chr12:27710694-27711194 1.0000 100 chr10:41882172-41882672 1.0000 100 chr17:76736844-76737344 1.0000 100 chr20:31075502-31076002 1.0000 100 chrUn_KI270587v1:1675-21 1.0000 100 chr10:22229112-22229612 1.0000 100 chr1:183471823-183472323 1.0000 100 chr19:50136261-50136761 1.0000 100 chr19:41310205-41310705 1.0000 100 chr19:13153062-13153562 1.0000 100 chr17:74514007-74514507 1.0000 100 chr1:93078889-93079389 1.0000 100 chr1:44213165-44213665 1.0000 100 chr10:38527290-38527790 1.0000 100 chr10:1219869-1220369 1.0000 100 chr15:69452747-69453247 1.0000 100 chr20:58650941-58651441 1.0000 100 chr19:1383515-1384015 1.0000 100 chr6:44247010-44247510 1.0000 100 chrUn_GL000216v2:364-864 1.0000 100 chr17:45148408-45148908 1.0000 100 chr1:25998119-25998619 1.0000 100 chr1:155244584-155245084 1.0000 100 chr1:236097022-236097522 1.0000 100 chrX:73943984-73944484 1.0000 100 chrUn_KI270467v1:3122-36 1.0000 100 chr17:26603652-26604152 1.0000 100 chrUn_KI270466v1:187-687 1.0000 100 chrUn_KI270467v1:2908-34 1.0000 100 chrUn_KI270467v1:2038-25 1.0000 100 chr1:125179936-125180436 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP41.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP41.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP41.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 598 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59800 N= 598 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.226 C 0.274 G 0.274 T 0.226 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP41.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.226 C 0.274 G 0.274 T 0.226 ******************************************************************************** ******************************************************************************** MOTIF ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 width = 28 sites = 164 llr = 2012 E-value = 3.0e-270 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 81636171544282547:8165346336 pos.-specific C 1635171623351536:81833452443 probability G :::11:1:::1:1::::::::::::::: matrix T 121132232223:32:321:12312321 bits 2.1 1.9 1.7 1.5 Relative 1.3 * Entropy 1.1 * * * * (17.7 bits) 0.9 * * * ***** * 0.6 * * **** * ****** * * 0.4 *** ****** ***************** 0.2 **************************** 0.0 ---------------------------- Multilevel ACACACACAAACACACACACAACCACCA consensus TCATT TCCCT TCAT CCAACAAC sequence TT A T TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chr19:35947357-35947857 - 41 6.94e-13 ACACACACAC ACACACACACACACACACACACACACAC GAACAGTGCC chr1:161097509-161098009 - 29 6.94e-13 ACACACACAC ACACACACACACACACACACACACACAC AGAGAGAGAG chr19:47743183-47743683 - 45 6.94e-13 GCCCGAATAC ACACACACACACACACACACACACACAC ACACACACAC chr12:57111965-57112465 + 62 6.94e-13 aacaccacac acacacacacacacacacacacacacac acacacacaG chr18:46967228-46967728 - 45 1.62e-12 GCGCGCGCAC ACACACACACACACACACACACCATTAA GTAAACTTGG chr7:155918673-155919173 - 41 2.12e-12 CCATGCACAC ACAAACACACACACAAACACACTACAAA CACATGCAAA chr16:50693010-50693510 - 63 2.12e-12 GCTTCCCAAC ACATACACATACACACACACACACACCA CACACCACAC chr20:52972214-52972714 - 5 9.62e-12 ACATATGCAC ACACACACAAACACACACACACACCCTC GCAC chr21:42183832-42184332 - 52 1.22e-11 CACACACAAC ACACACATACCCAAACACACATTCACTA CACGCACACC chr10:79025734-79026234 + 29 2.42e-11 CAGTACAAAC ACACACACACACAAACACACACTCCCAC TCCACAGACA chr7:127259225-127259725 + 20 1.57e-10 cacaaccacc acaatcactaccaccatcaccaccacca ctgccaccac chr19:39906177-39906677 + 48 2.30e-10 TCGTATGcac acaaacactcaaacacactcacacacaa gtggtccccc chr6:169863636-169864136 + 38 3.35e-10 ctcaccacac acaaacatacatacactcaccacacata taaacacaga chr19:53560080-53560580 + 42 5.77e-10 atatacacac acatacacatatataaacaccatatata tacagacaca chr1:236101273-236101773 - 19 8.20e-10 CACATAGCAC TCACACACTCACACCCACACAACACTCC CATGTACCCA chr19:31095249-31095749 + 41 9.75e-10 acatgtaaac atacacacatagacacacacaatacaaa gatacacaca chr5:1929649-1930149 - 54 9.75e-10 ACAGCACACG TCACACACATACACACACACTACACACA ACACACATGC chr12:114904524-11490502 - 3 9.75e-10 ACACACATAC ACACACACTTTTATACACACACTCACAT TC chr17:81531946-81532446 - 10 1.37e-09 CATCACCACC ACCATCACCACCACCATCACCATCATCA TCACCATCA chr3:134795166-134795666 + 43 1.62e-09 tcccataaac acacacacacacatgcacacccacaccc acgcgcgccc chr22:27631854-27632354 - 64 1.62e-09 CACACTAAC ATATACACACATATACACACATTCATAT ACACACACAT chr16:89023064-89023564 + 72 1.62e-09 gttcacatgc acactcacacgcatacacacacactcac a chr17:78477683-78478183 + 34 1.62e-09 ttaccacatc accatcaccaccatcatcaccaccatca ccattatcat chr8:40820308-40820808 - 32 1.62e-09 ACACCAAAAC ACACTCACACACATACACACACAAATGC ACACATAAAC chr1:18858145-18858645 + 66 1.91e-09 cttcagcatc actatcatcaccaccaacaccatcatca ctaccat chr5:3445584-3446084 - 66 1.91e-09 CATCATC ACCATCACCACCATCATCACCATCACCA CCATCATCAC chr5:176591614-176592114 - 3 3.63e-09 CAACACCAAC ACCATCATCACCACCATCACCATCACAA CC chr6:167515978-167516478 + 53 3.63e-09 catcatcatc accatcatcaccaccatcaccatcatca ccatcatcac chr10:1219869-1220369 - 31 4.24e-09 CATTATCTTC ACCATCATCACCATCATCACCACCACCA CCATCACCAT chr21:41585169-41585669 + 72 5.77e-09 ccacacagac acacatacaatacaactcacacacaaca t chr3:194352499-194352999 - 40 5.77e-09 CCCACTCACC ACACACATACACCCACACACCCACTCAC TGCACACTCA chr22:43737287-43737787 + 50 6.71e-09 accatcactc acacacacatgtattcatacacacacac tcacctgtgc chr1:27086447-27086947 + 48 6.71e-09 acaccacacc acacacactacacaccacacatcccaca taccacacac chr1:205973096-205973596 + 7 9.04e-09 cacaca ccacacatacacacacacataacacaca tgcacacacc chr17:10297577-10298077 - 20 1.05e-08 CAAGATCACC ATCATCACCATCATCATCACCACCACCA CCTTCTCAAG chr16:89069058-89069558 - 57 1.05e-08 CATCACCACC ATCATCATCACCACCATCACCACCATCA TCATCATCAC chr22:27008517-27009017 + 22 1.40e-08 catcattatc accatcaccatcatcattaccaccatca tcaacatcgc chr10:122724579-12272507 + 35 1.61e-08 caccactcac attcattcacatacacacacaccactca ctcacactca chr16:57628748-57629248 - 36 1.86e-08 GCTCAGTCAC ACTCTCACACTCACACTCACATTCTCAC TCACTCTCAC chr19:51628401-51628901 - 45 1.86e-08 ATGCACATAC ACACGCACACATGCACATACACCACACA CACATATGCA chr16:86464035-86464535 - 31 1.86e-08 CACCACCACC ACAACCATCATCATCATCACCATCACCA CTATCACCAT chr1:100882605-100883105 + 26 1.86e-08 tctcataaaa aaacaaaaaacaaaaaaCACAACAAACC AACTAAAAAA chr21:31410213-31410713 - 66 2.14e-08 CATACAC ATACACACTATCACACACACTCTTACAC AGTCGCTCAC chr17:77718466-77718966 - 1 2.14e-08 ACACAGAGAC ACACACATGCATGCAAACACACACAAAC chr21:34843185-34843685 + 68 2.82e-08 acaaacatac acacatactgacatacacacatatacac ataca chr21:45591163-45591663 + 11 3.70e-08 ctccacatag acacacacatagatacacaccactccac ataagacaca chrX:140724055-140724555 + 63 3.70e-08 gacacattcc atactcacacacacactttccatacaca tacacagaca chr12:107463079-10746357 - 19 3.70e-08 AACCACCATC ACCCTCACTACCACCATCATCACCACCA CCACCATCAT chr17:22052628-22053128 + 55 4.83e-08 cctcagcata actatcactatcattatcaccaccttca ccatcaccat chr5:2439399-2439899 + 10 5.51e-08 ataaccatc attatcatcaccattatcaccatcacca ctgtcattat chr1:203526806-203527306 + 12 6.27e-08 ctcacacaac acacacactctcacacacacttgcacac cactcctaca chr9:36842792-36843292 - 16 7.13e-08 ACACATGCAC ACATACACGCACATACACACACAGACAC ATGCTCACAT chr1:231733029-231733529 - 29 7.13e-08 TGCCATCACC ACCAACACTCCTACCATTACCACCACCT CTACCATCAC chr12:132349433-13234993 + 15 9.20e-08 catcatcatc accatcaccaccaccatcatcaccatta tcatatcacc chr5:1044095-1044595 - 20 9.20e-08 ACTGACTCAC TCACACTAACCCATTCACACACTAACCC ATTCATTCAC chr19:33778459-33778959 + 63 9.20e-08 acgcggacac acagacacacacgtaaacacacagaaac aTGCACGGCT chr17:79498386-79498886 + 62 1.18e-07 ctacccatcc atccactcatccatccactcactcaccc atccatccac chr19:33505491-33505991 + 47 1.34e-07 ctcacaccca ccacaccccatcacaaacaccctacaca ttatttactc chr7:150003102-150003602 - 12 1.51e-07 CACACATTCC ACATACGACATCATACACACCACACACA CTGCACATAT chr13:101271859-10127235 - 65 1.51e-07 GCTCACAC ATGCTCACACGCACACACACCTCAAACA CACACAGTGA chr12:132950612-13295111 + 47 1.92e-07 agacatgtac agacacactgatacaaatacatcacaca tactcacaga chr17:56592644-56593144 - 70 2.17e-07 CAC ACACACACACACACACAGCCCCTACCCC ACCCCCCTTT chr10:6407303-6407803 - 56 2.17e-07 CACATACCAC ACACAATCACACATTCACACGCCATACA CACATGCCAT chr6:16906552-16907052 - 23 2.17e-07 TGTGTCTCTC TCTCTCACACACATACACACTTTAATAT GTGTAAATAT chr1:32471762-32472262 + 64 2.74e-07 taccatcatc accagtaccatcatcattaccatcatca ccagtacca chr19:3776454-3776954 - 28 2.74e-07 TCATCCATCC ACCCACCCACCTATCCATCCACCCACCA TCCACTCATC chrX:153512211-153512711 + 66 2.74e-07 TCTCTGTCTC TCTCTCTcacacacacacacagacatac tctcaca chr9:136581415-136581915 + 6 3.46e-07 cattc actcactcattcactcactcattcactc actcattcac chr5:174799843-174800343 + 62 3.46e-07 cacacccacc acatatgtatgtatacacacacaccaca tatactatat chr1:23392549-23393049 + 10 3.46e-07 catcataca caccacacacacacccactccacacata cacagccccc chr19:55519625-55520125 - 4 3.88e-07 CATGATCACC TTTCACACCATCATTATCACCTCCACTA CCA chr21:41954951-41955451 - 21 3.88e-07 TACACAATAC ATATACACACAGCACCACACCACACCCA TGTGCCACAC chr10:117089625-11709012 + 71 3.88e-07 ggctatcaaa aaacacaaaacaaaaaacaaatagaaaa ca chr5:175620361-175620861 - 28 4.35e-07 CACCATCACC ATTGTCATCCTCACCATCACCACCATCA CCATCATCAT chr10:6259076-6259576 + 18 4.87e-07 ccatccaccc aaccattcatccatccacccaaccatcc atccatccat chr19:36173814-36174314 - 55 4.87e-07 ACGGCAAAAC CTCATCTCTACAAAAAATACAAAAATTA GCCAGACGTG chr7:151842477-151842977 - 44 5.44e-07 CCCATCACTA CCTACCATCACTACTATCACAACCATCA CTACCTACCA chr1:6936955-6937455 + 16 5.44e-07 catcaccacc ataaccatcactgtcatcaccataatca tcacttatca chr7:566093-566593 + 47 6.08e-07 caccttcatc atcaccattatcatcatcaccatattca ccatttcatc chr21:45437844-45438344 + 48 6.08e-07 TCTCCTGCAC ACACTCACACTCACACTCAGACACACAG GCACTCTCCT chr5:3323694-3324194 - 38 6.78e-07 ACCACACAAC ACACACATCACACACCACAGATACCACA CAACTCATAC chr18:79797257-79797757 - 20 6.78e-07 TCATTCATAC TCACGTACATGCATACACACGCTCATAA CCACATTCAT chr7:140639928-140640428 + 11 6.78e-07 actcacacac agacacacaagcgcgcacacacacacac gcgcgcgcgc chr1:11909098-11909598 + 8 7.57e-07 gagaaac cccgtctctactaaaaatacaaaaatta gccgggcagg chr19:44213344-44213844 - 64 8.43e-07 GAATAGAAA ATAAACAACAACAAAAACCAAAGAAACA AAAACAAACA chr10:68332962-68333462 - 4 8.43e-07 TTGATAAATC ACCCACTTTTCTGCTCACAAAATCATCC CCG chr1:62266235-62266735 + 70 8.43e-07 CACACACACC ACTCACACCACTGCACACTCACACCACT GCC chr21:33895308-33895808 - 43 9.38e-07 AAACATGCAC ACACGCACACATACACGCACACACATGC GTGCACACAC chr5:110224-110724 + 31 9.38e-07 AATCTGCAAC ACACGTGCACACATCCACACAATCTGCA ACACGTGTGC chr19:39411872-39412372 - 42 1.04e-06 GTTTTTATAA ACTTACACATCTAATAAACCAACCAAAA CATCTACATC chr19:41918355-41918855 + 63 1.04e-06 aaccacacac accacatcactaaccctcacatacacca cacacagtac chr13:110874160-11087466 + 38 1.04e-06 cccagtcctc gcacacatttgcacactcacatccatac atggacacac chr10:110014791-11001529 - 48 1.04e-06 ATGGTGAAAC CCCATCTCTACTAAAAATACAAAAAATT AGCCAGGCGT chr19:28680655-28681155 + 22 1.16e-06 AGAGGAGAAT ATTCATTTTAACACTAACACATAAAAGA CCTTGAAAAA chrUn_KI270467v1:2908-34 - 57 1.43e-06 ATACTGTACA TAAAATATCCAAATACTCAAAATATATA TTACATACTG chr10:96124961-96125461 - 1 1.43e-06 ATTAATTTAA AAAATAATAATAAAAATCACTAATAAAA chr1:28648545-28649045 - 55 1.59e-06 GCCTCTAAAA AAAAAAAAAAACACACACAGAATCTCTT TTCAGTTACA chr14:103082937-10308343 - 13 1.59e-06 TCCACAATCC ACCACTACCATCAATAACCCAACATCCA TCCCGTCCAC chr17:1293418-1293918 - 62 1.76e-06 TGTGACATCA TCAAACTCAACCCACAACATCAAACTCA ACTCATGACA chr10:1495715-1496215 + 8 1.94e-06 catcatc atcattgtcatcaccatcaccatcatta ttgtgatcat chr5:1929042-1929542 - 63 1.94e-06 AACACACACC ACACACACAAAACACAACAAACATGCCA CATGCAACAC chr16:5730641-5731141 + 13 2.15e-06 tgtcattatc actatcatcattgtcatcaccactatta tcattgccac chr10:1232562-1233062 - 30 2.15e-06 CATATAGCAC ATGCATATCACTACACACAAACCACATA CACCACACAC chr19:58305268-58305768 - 39 2.38e-06 ACCCGTCCAC TCATTCACTCCCACCATCAGCACACTTA GGCCACGGGC chr12:50056946-50057446 - 69 2.38e-06 GTAC ACACACACATACACACACACGCTCCGAG TCACACTTGA chr16:1308270-1308770 - 1 2.62e-06 CCTCACTTAC TCATTCATTCCCACTCACTCATTCCCTC chr19:32711036-32711536 + 53 2.62e-06 catggcgaaa cctgtctctactaacaatacaaaaatta accaggcgtg chr7:443210-443710 - 65 2.90e-06 CATCCACC ATTCATCCATCCACCCATCCATCCACCA TCCACGATCC chr9:130448089-130448589 + 39 3.19e-06 acacaggcac acatgtgcaagcccaaacacatcacaca catgcatgca chr19:50803618-50804118 + 62 3.52e-06 AGGACCTAAG CCAAAAACTAACGTTAACAAAACCCTCT CACGTGGCAT chr5:173284436-173284936 + 67 3.87e-06 ccaatcatcc accctttcatctatccatccatccactc acccac chr19:39997158-39997658 - 11 3.87e-06 CCTGTCTCAG CCTCACACCCGCACCCACACCCGCCCAA CCCGGTCCTG chr19:8107270-8107770 - 45 4.26e-06 CCGACCATCC ATCCATTCATCCATCCTTCCACTCATCC TTCCATCCAT chr6:24776639-24777139 - 68 4.26e-06 ATTAA ATAGTCACCAGAAAAAGCAAAATAAACA GATACTAGGG chr22:28492199-28492699 + 14 4.26e-06 ctagttaaag ataacaattaaagctaacaaattaaaca taagtattta chr19:36604662-36605162 + 60 4.69e-06 CGGGACCATC ACAGGCGCGCCcactcacaccaccacac acggacgcag chr12:130584380-13058488 + 39 4.69e-06 TGACCATTAC ATCATCATCACTGCCATCACCTCATCAC CATCACCTCA chr19:35297919-35298419 + 63 4.69e-06 aaccacgcac acactacaccctatacacactacacata catgcactac chr21:45332367-45332867 - 2 6.80e-06 ACACAGATAC AGACACACTGAGACACACACACAGACAC A chr19:44251262-44251762 + 64 6.80e-06 aaccgaatcc agcagcacatcaaaaaacttaaccacca tgatcaagt chr20:60142-60642 + 64 6.80e-06 ctccattaca ttccactccactccactcaaatccattc aattccatt chr10:1498864-1499364 + 57 7.45e-06 ccctcaacac ttattcatcactcatcactcactcatta ctcatttatt chr21:37531991-37532491 + 14 7.45e-06 gtcttgctta tccattaataccattatcacaccttaaa gagaattaaa chr19:43671430-43671930 - 30 8.16e-06 CTTCGTCTCA ATAAATAAATAAATAAATAATAAAAAGA AAGAAAAAAC chr19:47229140-47229640 + 42 8.93e-06 TCAGGCACAC ACAGACACATGCCATCAGACCTCAACAC ACCACCAGAC chr19:35701655-35702155 - 3 8.93e-06 GCAAGACTCC ATCTCAAAAAATAAAAATAAAAAATAAA GT chr17:48891812-48892312 - 19 9.76e-06 ATGGTGAAAC CCCGTCTCTACTAAGAATACAAAAATTA GCCGGGCATG chr7:141075373-141075873 - 24 1.07e-05 CTTTCTTCAG AGCAGTTTTAATACACATTCAAACAATA TTCCAGTGGG chr19:30182910-30183410 + 39 1.16e-05 ggagtgcaaa acaaggatatccactcacaccacttcta ttcaacctgg chr1:236163652-236164152 + 6 1.65e-05 CCACA CTTTTcacacttcctcacacctcccata ctgcctcaca chrX:72418055-72418555 + 70 1.65e-05 tataaggaac ttaaacaaataagcaaaaaacacccaaa ccc chr10:20550128-20550628 - 36 1.65e-05 CACATTTACC ATATACCCACATCATAATCCCACCACAC CTGCCGTCAT chrUn_KI270466v1:187-687 - 42 2.30e-05 ATGCTGTACA TAAAATATCAAAGTACACAAAATATGTA TTATGTACTG chr19:34418330-34418830 - 1 2.30e-05 TTTATAATAG CCAAACACTGGAAATAACCCAAATATCC chr19:47242074-47242574 - 8 2.30e-05 TATTAGACAC ACAGTTCCATGGACACACAACATCACCC TGACAAA chr1:183060659-183061159 - 2 2.30e-05 TCTATTTTAC ACAAACCTACTTCTCAACACGATATTTT C chr19:480623-481123 - 2 2.50e-05 GTTCTCCATC ATCCTTCCCATCATCCTTTCCATCATCC T chr6:44247010-44247510 - 20 2.71e-05 GACAGAAAAA AACAAAAACAACACGAATACAGCACTAA AGGGAAAGAA chr1:40783079-40783579 + 53 3.19e-05 TCGCAGCCAC CCACACCCGACCCATAACTCACACCTCA CTGACTCCAT chr10:26858526-26859026 + 13 3.19e-05 GAGGGGTAAA AAAAAAGCATTACAACATACAACTACCT GAAAAAGTAA chr1:236269766-236270266 + 73 3.19e-05 TGATGTTTCA ACCTTAACAAATCTACACTATTATATAA chr1:180455050-180455550 + 15 3.19e-05 gcaaactaac acaggaacagaaaaccaaacaccacata ttctcattca chr21:37196185-37196685 - 16 3.19e-05 ATGGTGAAAC CCCACCTGTACTAAAAATACAAAAATTA GCCAGGCTTA chr5:10548551-10549051 - 9 3.46e-05 CGACATGCAC TAACACATGCCAACGCACACGCTAACAC ATGCCGAC chr15:80074921-80075421 - 25 3.46e-05 AATGTTCAAC ACCAAAGTATCTGAAAAAAAATCAAACA ATAAAAGTAG chr14:106390790-10639129 + 53 3.46e-05 CACCTCACAC ACACCCCCAGGTCACCTCACATCCATCC TGGATCACCT chr1:113931658-113932158 - 48 3.46e-05 GGAATAATAG TAAATTTTTTTTAAAAAGACCTAAAAAA TACAGACTGC chr19:40826987-40827487 + 54 4.38e-05 CTGCCACACA ACACACGCTAGTACACAGCAACCCAGCA GACAGCACAG chrX:73852277-73852777 + 15 4.38e-05 AAATTGCCTC AAAATATTCCAAATACTTTCTTTAAAAA AATATGGAGG chr5:10182761-10183261 + 27 4.38e-05 tgcagccaac aaacatatgaaaacaagctcatcatcac tggtgattac chr21:25591149-25591649 + 11 4.74e-05 aatgagaaaa caagccacatatacaaacacaaggtaca gacagaaaaa chr19:36804884-36805384 - 28 5.12e-05 TGGCAGTTTA AATAAAATAAAACATAACCCAACTACAT GCCACGTACA chr1:229334377-229334877 + 16 5.12e-05 aaggaaaaaa taataaattaatgaaaatatacaataaa gagaaaccac chr1:223480098-223480598 - 2 5.52e-05 CTCCACCAAC ACACAATTTTATACACATAGTGCACACA T chr19:40347810-40348310 + 33 5.96e-05 GCGCTCAAAC ATCAATACTAATAATaatagtatagtaa cgaagtgagc chrUn_KI270467v1:2038-25 - 52 6.93e-05 ATACTGTACA TAAAATATCAAAGTACCCAAAATATATA TTGTATACTG chrUn_KI270467v1:3122-36 - 52 6.93e-05 ATACTGTCCA TAAAATATCAAAGTACCCAAAATATATA TTGTAAACTG chr1:80403289-80403789 - 16 7.47e-05 TAATGTAATA TTATATACACATCTACTATAAACATTCA GACTTTTATA chr5:177981555-177982055 - 61 8.65e-05 TCCACCATCC ATCCTTTTATCCGTCCATTCAGCAAATA TCCATCGAGC chr1:237043048-237043548 - 39 9.31e-05 CCCCACCACC ACCCGCGCGCGCGCACACACGCAAACAC ACGCTCGCTT chr1:13750084-13750584 - 59 1.08e-04 AAAAACACAA ACCTGTATTTGTATCAATAAGAAACTAA CCATACTGTG chr15:68279352-68279852 - 51 1.24e-04 AAAACTAAAG ATATATATTTTTATGCTCAGACCCTACT GACTTCAAAA chr1:227050022-227050522 + 33 2.30e-04 actagaaaac agatgtaatacaaaaatgacacttaata cccatcaagc chr19:44215238-44215738 - 3 3.84e-04 CAGACTGCAC TAAAAAAAAAAAAATTATACATATATAT TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35947357-35947857 6.9e-13 40_[-1]_32 chr1:161097509-161098009 6.9e-13 28_[-1]_44 chr19:47743183-47743683 6.9e-13 44_[-1]_28 chr12:57111965-57112465 6.9e-13 61_[+1]_11 chr18:46967228-46967728 1.6e-12 44_[-1]_28 chr7:155918673-155919173 2.1e-12 40_[-1]_32 chr16:50693010-50693510 2.1e-12 62_[-1]_10 chr20:52972214-52972714 9.6e-12 4_[-1]_68 chr21:42183832-42184332 1.2e-11 51_[-1]_21 chr10:79025734-79026234 2.4e-11 28_[+1]_44 chr7:127259225-127259725 1.6e-10 19_[+1]_53 chr19:39906177-39906677 2.3e-10 47_[+1]_25 chr6:169863636-169864136 3.3e-10 37_[+1]_35 chr19:53560080-53560580 5.8e-10 41_[+1]_31 chr1:236101273-236101773 8.2e-10 18_[-1]_54 chr19:31095249-31095749 9.7e-10 40_[+1]_32 chr5:1929649-1930149 9.7e-10 53_[-1]_19 chr12:114904524-11490502 9.7e-10 2_[-1]_70 chr17:81531946-81532446 1.4e-09 9_[-1]_63 chr3:134795166-134795666 1.6e-09 42_[+1]_30 chr22:27631854-27632354 1.6e-09 63_[-1]_9 chr16:89023064-89023564 1.6e-09 71_[+1]_1 chr17:78477683-78478183 1.6e-09 33_[+1]_39 chr8:40820308-40820808 1.6e-09 31_[-1]_41 chr1:18858145-18858645 1.9e-09 65_[+1]_7 chr5:3445584-3446084 1.9e-09 65_[-1]_7 chr5:176591614-176592114 3.6e-09 2_[-1]_70 chr6:167515978-167516478 3.6e-09 52_[+1]_20 chr10:1219869-1220369 4.2e-09 30_[-1]_42 chr21:41585169-41585669 5.8e-09 71_[+1]_1 chr3:194352499-194352999 5.8e-09 39_[-1]_33 chr22:43737287-43737787 6.7e-09 49_[+1]_23 chr1:27086447-27086947 6.7e-09 47_[+1]_25 chr1:205973096-205973596 9e-09 6_[+1]_66 chr17:10297577-10298077 1e-08 19_[-1]_53 chr16:89069058-89069558 1e-08 56_[-1]_16 chr22:27008517-27009017 1.4e-08 21_[+1]_51 chr10:122724579-12272507 1.6e-08 34_[+1]_38 chr16:57628748-57629248 1.9e-08 35_[-1]_37 chr19:51628401-51628901 1.9e-08 44_[-1]_28 chr16:86464035-86464535 1.9e-08 30_[-1]_42 chr1:100882605-100883105 1.9e-08 25_[+1]_47 chr21:31410213-31410713 2.1e-08 65_[-1]_7 chr17:77718466-77718966 2.1e-08 [-1]_72 chr21:34843185-34843685 2.8e-08 67_[+1]_5 chr21:45591163-45591663 3.7e-08 10_[+1]_62 chrX:140724055-140724555 3.7e-08 62_[+1]_10 chr12:107463079-10746357 3.7e-08 18_[-1]_54 chr17:22052628-22053128 4.8e-08 54_[+1]_18 chr5:2439399-2439899 5.5e-08 9_[+1]_63 chr1:203526806-203527306 6.3e-08 11_[+1]_61 chr9:36842792-36843292 7.1e-08 15_[-1]_57 chr1:231733029-231733529 7.1e-08 28_[-1]_44 chr12:132349433-13234993 9.2e-08 14_[+1]_58 chr5:1044095-1044595 9.2e-08 19_[-1]_53 chr19:33778459-33778959 9.2e-08 62_[+1]_10 chr17:79498386-79498886 1.2e-07 61_[+1]_11 chr19:33505491-33505991 1.3e-07 46_[+1]_26 chr7:150003102-150003602 1.5e-07 11_[-1]_61 chr13:101271859-10127235 1.5e-07 64_[-1]_8 chr12:132950612-13295111 1.9e-07 46_[+1]_26 chr17:56592644-56593144 2.2e-07 69_[-1]_3 chr10:6407303-6407803 2.2e-07 55_[-1]_17 chr6:16906552-16907052 2.2e-07 22_[-1]_50 chr1:32471762-32472262 2.7e-07 63_[+1]_9 chr19:3776454-3776954 2.7e-07 27_[-1]_45 chrX:153512211-153512711 2.7e-07 65_[+1]_7 chr9:136581415-136581915 3.5e-07 5_[+1]_67 chr5:174799843-174800343 3.5e-07 61_[+1]_11 chr1:23392549-23393049 3.5e-07 9_[+1]_63 chr19:55519625-55520125 3.9e-07 3_[-1]_69 chr21:41954951-41955451 3.9e-07 20_[-1]_52 chr10:117089625-11709012 3.9e-07 70_[+1]_2 chr5:175620361-175620861 4.3e-07 27_[-1]_45 chr10:6259076-6259576 4.9e-07 17_[+1]_55 chr19:36173814-36174314 4.9e-07 54_[-1]_18 chr7:151842477-151842977 5.4e-07 43_[-1]_29 chr1:6936955-6937455 5.4e-07 15_[+1]_57 chr7:566093-566593 6.1e-07 46_[+1]_26 chr21:45437844-45438344 6.1e-07 47_[+1]_25 chr5:3323694-3324194 6.8e-07 37_[-1]_35 chr18:79797257-79797757 6.8e-07 19_[-1]_53 chr7:140639928-140640428 6.8e-07 10_[+1]_62 chr1:11909098-11909598 7.6e-07 7_[+1]_65 chr19:44213344-44213844 8.4e-07 63_[-1]_9 chr10:68332962-68333462 8.4e-07 3_[-1]_69 chr1:62266235-62266735 8.4e-07 69_[+1]_3 chr21:33895308-33895808 9.4e-07 42_[-1]_30 chr5:110224-110724 9.4e-07 30_[+1]_42 chr19:39411872-39412372 1e-06 41_[-1]_31 chr19:41918355-41918855 1e-06 62_[+1]_10 chr13:110874160-11087466 1e-06 37_[+1]_35 chr10:110014791-11001529 1e-06 47_[-1]_25 chr19:28680655-28681155 1.2e-06 21_[+1]_51 chrUn_KI270467v1:2908-34 1.4e-06 56_[-1]_16 chr10:96124961-96125461 1.4e-06 [-1]_72 chr1:28648545-28649045 1.6e-06 54_[-1]_18 chr14:103082937-10308343 1.6e-06 12_[-1]_60 chr17:1293418-1293918 1.8e-06 61_[-1]_11 chr10:1495715-1496215 1.9e-06 7_[+1]_65 chr5:1929042-1929542 1.9e-06 62_[-1]_10 chr16:5730641-5731141 2.1e-06 12_[+1]_60 chr10:1232562-1233062 2.1e-06 29_[-1]_43 chr19:58305268-58305768 2.4e-06 38_[-1]_34 chr12:50056946-50057446 2.4e-06 68_[-1]_4 chr16:1308270-1308770 2.6e-06 [-1]_72 chr19:32711036-32711536 2.6e-06 52_[+1]_20 chr7:443210-443710 2.9e-06 64_[-1]_8 chr9:130448089-130448589 3.2e-06 38_[+1]_34 chr19:50803618-50804118 3.5e-06 61_[+1]_11 chr5:173284436-173284936 3.9e-06 66_[+1]_6 chr19:39997158-39997658 3.9e-06 10_[-1]_62 chr19:8107270-8107770 4.3e-06 44_[-1]_28 chr6:24776639-24777139 4.3e-06 67_[-1]_5 chr22:28492199-28492699 4.3e-06 13_[+1]_59 chr19:36604662-36605162 4.7e-06 59_[+1]_13 chr12:130584380-13058488 4.7e-06 38_[+1]_34 chr19:35297919-35298419 4.7e-06 62_[+1]_10 chr21:45332367-45332867 6.8e-06 1_[-1]_71 chr19:44251262-44251762 6.8e-06 63_[+1]_9 chr20:60142-60642 6.8e-06 63_[+1]_9 chr10:1498864-1499364 7.5e-06 56_[+1]_16 chr21:37531991-37532491 7.5e-06 13_[+1]_59 chr19:43671430-43671930 8.2e-06 29_[-1]_43 chr19:47229140-47229640 8.9e-06 41_[+1]_31 chr19:35701655-35702155 8.9e-06 2_[-1]_70 chr17:48891812-48892312 9.8e-06 18_[-1]_54 chr7:141075373-141075873 1.1e-05 23_[-1]_49 chr19:30182910-30183410 1.2e-05 38_[+1]_34 chr1:236163652-236164152 1.6e-05 5_[+1]_67 chrX:72418055-72418555 1.6e-05 69_[+1]_3 chr10:20550128-20550628 1.6e-05 35_[-1]_37 chrUn_KI270466v1:187-687 2.3e-05 41_[-1]_31 chr19:34418330-34418830 2.3e-05 [-1]_72 chr19:47242074-47242574 2.3e-05 7_[-1]_65 chr1:183060659-183061159 2.3e-05 1_[-1]_71 chr19:480623-481123 2.5e-05 1_[-1]_71 chr6:44247010-44247510 2.7e-05 19_[-1]_53 chr1:40783079-40783579 3.2e-05 52_[+1]_20 chr10:26858526-26859026 3.2e-05 12_[+1]_60 chr1:236269766-236270266 3.2e-05 72_[+1] chr1:180455050-180455550 3.2e-05 14_[+1]_58 chr21:37196185-37196685 3.2e-05 15_[-1]_57 chr5:10548551-10549051 3.5e-05 8_[-1]_64 chr15:80074921-80075421 3.5e-05 24_[-1]_48 chr14:106390790-10639129 3.5e-05 52_[+1]_20 chr1:113931658-113932158 3.5e-05 47_[-1]_25 chr19:40826987-40827487 4.4e-05 53_[+1]_19 chrX:73852277-73852777 4.4e-05 14_[+1]_58 chr5:10182761-10183261 4.4e-05 26_[+1]_46 chr21:25591149-25591649 4.7e-05 10_[+1]_62 chr19:36804884-36805384 5.1e-05 27_[-1]_45 chr1:229334377-229334877 5.1e-05 15_[+1]_57 chr1:223480098-223480598 5.5e-05 1_[-1]_71 chr19:40347810-40348310 6e-05 32_[+1]_40 chrUn_KI270467v1:2038-25 6.9e-05 51_[-1]_21 chrUn_KI270467v1:3122-36 6.9e-05 51_[-1]_21 chr1:80403289-80403789 7.5e-05 15_[-1]_57 chr5:177981555-177982055 8.7e-05 60_[-1]_12 chr1:237043048-237043548 9.3e-05 38_[-1]_34 chr1:13750084-13750584 0.00011 58_[-1]_14 chr15:68279352-68279852 0.00012 50_[-1]_22 chr1:227050022-227050522 0.00023 32_[+1]_40 chr19:44215238-44215738 0.00038 2_[-1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAMWCACMMMYAHMMACACMMHMAHMA width=28 seqs=164 chr19:35947357-35947857 ( 41) ACACACACACACACACACACACACACAC 1 chr1:161097509-161098009 ( 29) ACACACACACACACACACACACACACAC 1 chr19:47743183-47743683 ( 45) ACACACACACACACACACACACACACAC 1 chr12:57111965-57112465 ( 62) ACACACACACACACACACACACACACAC 1 chr18:46967228-46967728 ( 45) ACACACACACACACACACACACCATTAA 1 chr7:155918673-155919173 ( 41) ACAAACACACACACAAACACACTACAAA 1 chr16:50693010-50693510 ( 63) ACATACACATACACACACACACACACCA 1 chr20:52972214-52972714 ( 5) ACACACACAAACACACACACACACCCTC 1 chr21:42183832-42184332 ( 52) ACACACATACCCAAACACACATTCACTA 1 chr10:79025734-79026234 ( 29) ACACACACACACAAACACACACTCCCAC 1 chr7:127259225-127259725 ( 20) ACAATCACTACCACCATCACCACCACCA 1 chr19:39906177-39906677 ( 48) ACAAACACTCAAACACACTCACACACAA 1 chr6:169863636-169864136 ( 38) ACAAACATACATACACTCACCACACATA 1 chr19:53560080-53560580 ( 42) ACATACACATATATAAACACCATATATA 1 chr1:236101273-236101773 ( 19) TCACACACTCACACCCACACAACACTCC 1 chr19:31095249-31095749 ( 41) ATACACACATAGACACACACAATACAAA 1 chr5:1929649-1930149 ( 54) TCACACACATACACACACACTACACACA 1 chr12:114904524-11490502 ( 3) ACACACACTTTTATACACACACTCACAT 1 chr17:81531946-81532446 ( 10) ACCATCACCACCACCATCACCATCATCA 1 chr3:134795166-134795666 ( 43) ACACACACACACATGCACACCCACACCC 1 chr22:27631854-27632354 ( 64) ATATACACACATATACACACATTCATAT 1 chr16:89023064-89023564 ( 72) ACACTCACACGCATACACACACACTCAC 1 chr17:78477683-78478183 ( 34) ACCATCACCACCATCATCACCACCATCA 1 chr8:40820308-40820808 ( 32) ACACTCACACACATACACACACAAATGC 1 chr1:18858145-18858645 ( 66) ACTATCATCACCACCAACACCATCATCA 1 chr5:3445584-3446084 ( 66) ACCATCACCACCATCATCACCATCACCA 1 chr5:176591614-176592114 ( 3) ACCATCATCACCACCATCACCATCACAA 1 chr6:167515978-167516478 ( 53) ACCATCATCACCACCATCACCATCATCA 1 chr10:1219869-1220369 ( 31) ACCATCATCACCATCATCACCACCACCA 1 chr21:41585169-41585669 ( 72) ACACATACAATACAACTCACACACAACA 1 chr3:194352499-194352999 ( 40) ACACACATACACCCACACACCCACTCAC 1 chr22:43737287-43737787 ( 50) ACACACACATGTATTCATACACACACAC 1 chr1:27086447-27086947 ( 48) ACACACACTACACACCACACATCCCACA 1 chr1:205973096-205973596 ( 7) CCACACATACACACACACATAACACACA 1 chr17:10297577-10298077 ( 20) ATCATCACCATCATCATCACCACCACCA 1 chr16:89069058-89069558 ( 57) ATCATCATCACCACCATCACCACCATCA 1 chr22:27008517-27009017 ( 22) ACCATCACCATCATCATTACCACCATCA 1 chr10:122724579-12272507 ( 35) ATTCATTCACATACACACACACCACTCA 1 chr16:57628748-57629248 ( 36) ACTCTCACACTCACACTCACATTCTCAC 1 chr19:51628401-51628901 ( 45) ACACGCACACATGCACATACACCACACA 1 chr16:86464035-86464535 ( 31) ACAACCATCATCATCATCACCATCACCA 1 chr1:100882605-100883105 ( 26) AAACAAAAAACAAAAAACACAACAAACC 1 chr21:31410213-31410713 ( 66) ATACACACTATCACACACACTCTTACAC 1 chr17:77718466-77718966 ( 1) ACACACATGCATGCAAACACACACAAAC 1 chr21:34843185-34843685 ( 68) ACACATACTGACATACACACATATACAC 1 chr21:45591163-45591663 ( 11) ACACACACATAGATACACACCACTCCAC 1 chrX:140724055-140724555 ( 63) ATACTCACACACACACTTTCCATACACA 1 chr12:107463079-10746357 ( 19) ACCCTCACTACCACCATCATCACCACCA 1 chr17:22052628-22053128 ( 55) ACTATCACTATCATTATCACCACCTTCA 1 chr5:2439399-2439899 ( 10) ATTATCATCACCATTATCACCATCACCA 1 chr1:203526806-203527306 ( 12) ACACACACTCTCACACACACTTGCACAC 1 chr9:36842792-36843292 ( 16) ACATACACGCACATACACACACAGACAC 1 chr1:231733029-231733529 ( 29) ACCAACACTCCTACCATTACCACCACCT 1 chr12:132349433-13234993 ( 15) ACCATCACCACCACCATCATCACCATTA 1 chr5:1044095-1044595 ( 20) TCACACTAACCCATTCACACACTAACCC 1 chr19:33778459-33778959 ( 63) ACAGACACACACGTAAACACACAGAAAC 1 chr17:79498386-79498886 ( 62) ATCCACTCATCCATCCACTCACTCACCC 1 chr19:33505491-33505991 ( 47) CCACACCCCATCACAAACACCCTACACA 1 chr7:150003102-150003602 ( 12) ACATACGACATCATACACACCACACACA 1 chr13:101271859-10127235 ( 65) ATGCTCACACGCACACACACCTCAAACA 1 chr12:132950612-13295111 ( 47) AGACACACTGATACAAATACATCACACA 1 chr17:56592644-56593144 ( 70) ACACACACACACACACAGCCCCTACCCC 1 chr10:6407303-6407803 ( 56) ACACAATCACACATTCACACGCCATACA 1 chr6:16906552-16907052 ( 23) TCTCTCACACACATACACACTTTAATAT 1 chr1:32471762-32472262 ( 64) ACCAGTACCATCATCATTACCATCATCA 1 chr19:3776454-3776954 ( 28) ACCCACCCACCTATCCATCCACCCACCA 1 chrX:153512211-153512711 ( 66) TCTCTCTCACACACACACACAGACATAC 1 chr9:136581415-136581915 ( 6) ACTCACTCATTCACTCACTCATTCACTC 1 chr5:174799843-174800343 ( 62) ACATATGTATGTATACACACACACCACA 1 chr1:23392549-23393049 ( 10) CACCACACACACACCCACTCCACACATA 1 chr19:55519625-55520125 ( 4) TTTCACACCATCATTATCACCTCCACTA 1 chr21:41954951-41955451 ( 21) ATATACACACAGCACCACACCACACCCA 1 chr10:117089625-11709012 ( 71) AAACACAAAACAAAAAACAAATAGAAAA 1 chr5:175620361-175620861 ( 28) ATTGTCATCCTCACCATCACCACCATCA 1 chr10:6259076-6259576 ( 18) AACCATTCATCCATCCACCCAACCATCC 1 chr19:36173814-36174314 ( 55) CTCATCTCTACAAAAAATACAAAAATTA 1 chr7:151842477-151842977 ( 44) CCTACCATCACTACTATCACAACCATCA 1 chr1:6936955-6937455 ( 16) ATAACCATCACTGTCATCACCATAATCA 1 chr7:566093-566593 ( 47) ATCACCATTATCATCATCACCATATTCA 1 chr21:45437844-45438344 ( 48) ACACTCACACTCACACTCAGACACACAG 1 chr5:3323694-3324194 ( 38) ACACACATCACACACCACAGATACCACA 1 chr18:79797257-79797757 ( 20) TCACGTACATGCATACACACGCTCATAA 1 chr7:140639928-140640428 ( 11) AGACACACAAGCGCGCACACACACACAC 1 chr1:11909098-11909598 ( 8) CCCGTCTCTACTAAAAATACAAAAATTA 1 chr19:44213344-44213844 ( 64) ATAAACAACAACAAAAACCAAAGAAACA 1 chr10:68332962-68333462 ( 4) ACCCACTTTTCTGCTCACAAAATCATCC 1 chr1:62266235-62266735 ( 70) ACTCACACCACTGCACACTCACACCACT 1 chr21:33895308-33895808 ( 43) ACACGCACACATACACGCACACACATGC 1 chr5:110224-110724 ( 31) ACACGTGCACACATCCACACAATCTGCA 1 chr19:39411872-39412372 ( 42) ACTTACACATCTAATAAACCAACCAAAA 1 chr19:41918355-41918855 ( 63) ACCACATCACTAACCCTCACATACACCA 1 chr13:110874160-11087466 ( 38) GCACACATTTGCACACTCACATCCATAC 1 chr10:110014791-11001529 ( 48) CCCATCTCTACTAAAAATACAAAAAATT 1 chr19:28680655-28681155 ( 22) ATTCATTTTAACACTAACACATAAAAGA 1 chrUn_KI270467v1:2908-34 ( 57) TAAAATATCCAAATACTCAAAATATATA 1 chr10:96124961-96125461 ( 1) AAAATAATAATAAAAATCACTAATAAAA 1 chr1:28648545-28649045 ( 55) AAAAAAAAAAACACACACAGAATCTCTT 1 chr14:103082937-10308343 ( 13) ACCACTACCATCAATAACCCAACATCCA 1 chr17:1293418-1293918 ( 62) TCAAACTCAACCCACAACATCAAACTCA 1 chr10:1495715-1496215 ( 8) ATCATTGTCATCACCATCACCATCATTA 1 chr5:1929042-1929542 ( 63) ACACACACAAAACACAACAAACATGCCA 1 chr16:5730641-5731141 ( 13) ACTATCATCATTGTCATCACCACTATTA 1 chr10:1232562-1233062 ( 30) ATGCATATCACTACACACAAACCACATA 1 chr19:58305268-58305768 ( 39) TCATTCACTCCCACCATCAGCACACTTA 1 chr12:50056946-50057446 ( 69) ACACACACATACACACACACGCTCCGAG 1 chr16:1308270-1308770 ( 1) TCATTCATTCCCACTCACTCATTCCCTC 1 chr19:32711036-32711536 ( 53) CCTGTCTCTACTAACAATACAAAAATTA 1 chr7:443210-443710 ( 65) ATTCATCCATCCACCCATCCATCCACCA 1 chr9:130448089-130448589 ( 39) ACATGTGCAAGCCCAAACACATCACACA 1 chr19:50803618-50804118 ( 62) CCAAAAACTAACGTTAACAAAACCCTCT 1 chr5:173284436-173284936 ( 67) ACCCTTTCATCTATCCATCCATCCACTC 1 chr19:39997158-39997658 ( 11) CCTCACACCCGCACCCACACCCGCCCAA 1 chr19:8107270-8107770 ( 45) ATCCATTCATCCATCCTTCCACTCATCC 1 chr6:24776639-24777139 ( 68) ATAGTCACCAGAAAAAGCAAAATAAACA 1 chr22:28492199-28492699 ( 14) ATAACAATTAAAGCTAACAAATTAAACA 1 chr19:36604662-36605162 ( 60) ACAGGCGCGCCCACTCACACCACCACAC 1 chr12:130584380-13058488 ( 39) ATCATCATCACTGCCATCACCTCATCAC 1 chr19:35297919-35298419 ( 63) ACACTACACCCTATACACACTACACATA 1 chr21:45332367-45332867 ( 2) AGACACACTGAGACACACACACAGACAC 1 chr19:44251262-44251762 ( 64) AGCAGCACATCAAAAAACTTAACCACCA 1 chr20:60142-60642 ( 64) TTCCACTCCACTCCACTCAAATCCATTC 1 chr10:1498864-1499364 ( 57) TTATTCATCACTCATCACTCACTCATTA 1 chr21:37531991-37532491 ( 14) TCCATTAATACCATTATCACACCTTAAA 1 chr19:43671430-43671930 ( 30) ATAAATAAATAAATAAATAATAAAAAGA 1 chr19:47229140-47229640 ( 42) ACAGACACATGCCATCAGACCTCAACAC 1 chr19:35701655-35702155 ( 3) ATCTCAAAAAATAAAAATAAAAAATAAA 1 chr17:48891812-48892312 ( 19) CCCGTCTCTACTAAGAATACAAAAATTA 1 chr7:141075373-141075873 ( 24) AGCAGTTTTAATACACATTCAAACAATA 1 chr19:30182910-30183410 ( 39) ACAAGGATATCCACTCACACCACTTCTA 1 chr1:236163652-236164152 ( 6) CTTTTCACACTTCCTCACACCTCCCATA 1 chrX:72418055-72418555 ( 70) TTAAACAAATAAGCAAAAAACACCCAAA 1 chr10:20550128-20550628 ( 36) ATATACCCACATCATAATCCCACCACAC 1 chrUn_KI270466v1:187-687 ( 42) TAAAATATCAAAGTACACAAAATATGTA 1 chr19:34418330-34418830 ( 1) CCAAACACTGGAAATAACCCAAATATCC 1 chr19:47242074-47242574 ( 8) ACAGTTCCATGGACACACAACATCACCC 1 chr1:183060659-183061159 ( 2) ACAAACCTACTTCTCAACACGATATTTT 1 chr19:480623-481123 ( 2) ATCCTTCCCATCATCCTTTCCATCATCC 1 chr6:44247010-44247510 ( 20) AACAAAAACAACACGAATACAGCACTAA 1 chr1:40783079-40783579 ( 53) CCACACCCGACCCATAACTCACACCTCA 1 chr10:26858526-26859026 ( 13) AAAAAAGCATTACAACATACAACTACCT 1 chr1:236269766-236270266 ( 73) ACCTTAACAAATCTACACTATTATATAA 1 chr1:180455050-180455550 ( 15) ACAGGAACAGAAAACCAAACACCACATA 1 chr21:37196185-37196685 ( 16) CCCACCTGTACTAAAAATACAAAAATTA 1 chr5:10548551-10549051 ( 9) TAACACATGCCAACGCACACGCTAACAC 1 chr15:80074921-80075421 ( 25) ACCAAAGTATCTGAAAAAAAATCAAACA 1 chr14:106390790-10639129 ( 53) ACACCCCCAGGTCACCTCACATCCATCC 1 chr1:113931658-113932158 ( 48) TAAATTTTTTTTAAAAAGACCTAAAAAA 1 chr19:40826987-40827487 ( 54) ACACACGCTAGTACACAGCAACCCAGCA 1 chrX:73852277-73852777 ( 15) AAAATATTCCAAATACTTTCTTTAAAAA 1 chr5:10182761-10183261 ( 27) AAACATATGAAAACAAGCTCATCATCAC 1 chr21:25591149-25591649 ( 11) CAAGCCACATATACAAACACAAGGTACA 1 chr19:36804884-36805384 ( 28) AATAAAATAAAACATAACCCAACTACAT 1 chr1:229334377-229334877 ( 16) TAATAAATTAATGAAAATATACAATAAA 1 chr1:223480098-223480598 ( 2) ACACAATTTTATACACATAGTGCACACA 1 chr19:40347810-40348310 ( 33) ATCAATACTAATAATAATAGTATAGTAA 1 chrUn_KI270467v1:2038-25 ( 52) TAAAATATCAAAGTACCCAAAATATATA 1 chrUn_KI270467v1:3122-36 ( 52) TAAAATATCAAAGTACCCAAAATATATA 1 chr1:80403289-80403789 ( 16) TTATATACACATCTACTATAAACATTCA 1 chr5:177981555-177982055 ( 61) ATCCTTTTATCCGTCCATTCAGCAAATA 1 chr1:237043048-237043548 ( 39) ACCCGCGCGCGCGCACACACGCAAACAC 1 chr1:13750084-13750584 ( 59) ACCTGTATTTGTATCAATAAGAAACTAA 1 chr15:68279352-68279852 ( 51) ATATATATTTTTATGCTCAGACCCTACT 1 chr1:227050022-227050522 ( 33) AGATGTAATACAAAAATGACACTTAATA 1 chr19:44215238-44215738 ( 3) TAAAAAAAAAAAAATTATACATATATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43654 bayes= 9.90136 E= 3.0e-270 174 -149 -549 -69 -89 117 -290 0 142 -6 -449 -89 62 74 -203 -82 131 -203 -168 34 -96 130 -549 -17 168 -217 -217 -57 -140 118 -549 34 109 -17 -268 4 96 24 -290 -17 83 24 -140 -40 -40 90 -317 34 175 -117 -124 -1400 4 72 -1400 49 120 3 -290 -46 94 103 -1400 -521 163 -449 -390 25 -289 145 -317 -26 185 -179 -1400 -112 -75 152 -268 -263 139 12 -268 -175 106 18 -349 -21 37 51 -349 37 79 85 -317 -140 142 -24 -449 -57 49 39 -349 40 54 66 -349 -8 146 6 -449 -151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 164 E= 3.0e-270 0.756098 0.097561 0.006098 0.140244 0.121951 0.615854 0.036585 0.225610 0.603659 0.262195 0.012195 0.121951 0.347561 0.457317 0.067073 0.128049 0.560976 0.067073 0.085366 0.286585 0.115854 0.676829 0.006098 0.201220 0.725610 0.060976 0.060976 0.152439 0.085366 0.621951 0.006098 0.286585 0.481707 0.243902 0.042683 0.231707 0.439024 0.323171 0.036585 0.201220 0.402439 0.323171 0.103659 0.170732 0.170732 0.512195 0.030488 0.286585 0.762195 0.121951 0.115854 0.000000 0.231707 0.451220 0.000000 0.317073 0.518293 0.280488 0.036585 0.164634 0.432927 0.560976 0.000000 0.006098 0.701220 0.012195 0.018293 0.268293 0.030488 0.750000 0.030488 0.189024 0.817073 0.079268 0.000000 0.103659 0.134146 0.786585 0.042683 0.036585 0.591463 0.298780 0.042683 0.067073 0.469512 0.310976 0.024390 0.195122 0.292683 0.390244 0.024390 0.292683 0.390244 0.493902 0.030488 0.085366 0.603659 0.231707 0.012195 0.152439 0.317073 0.359756 0.024390 0.298780 0.329268 0.432927 0.024390 0.213415 0.621951 0.286585 0.012195 0.079268 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMWCACMMMYAHMMACACMMHMAHMA MEME-1 regular expression -------------------------------------------------------------------------------- A[CT][AC][CA][AT][CT]A[CT][ACT][ACT][AC][CT]A[CTA][AC][CA][AT]CAC[AC][AC][CAT][CA][AC][CAT][CAT][AC] -------------------------------------------------------------------------------- Time 847.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GAKGRDGRDGGDGAKG MEME-2 width = 16 sites = 168 llr = 1536 E-value = 2.8e-085 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAKGRDGRDGGDGAKG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2813541543132911 pos.-specific C 1:1:::::1::1:::: probability G 7257538526738168 matrix T ::4::31:3113::41 bits 2.1 1.9 1.7 * 1.5 * Relative 1.3 * * Entropy 1.1 * * ** * (13.2 bits) 0.9 ** ** ** * **** 0.6 ** ** ** ** **** 0.4 ******** ** **** 0.2 **************** 0.0 ---------------- Multilevel GAGGGAGAAGGGGAGG consensus A TAAG GTA AA T sequence T G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKGRDGRDGGDGAKG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr4:40295027-40295527 - 44 3.73e-08 TGGAGGCACA GATGGAGATGGAGATG GAGGCAGAAA chr7:566093-566593 - 2 7.03e-08 TGAATATGGT GATGATGATGGTGATG A chr12:132349433-13234993 - 70 7.03e-08 TGATGATGGT GATGATGATGGTGATG GTGACAATGA chr22:27008517-27009017 - 66 7.03e-08 ATGATATGGT GATGATGATGGTGATG ATAATGGCGA chr17:10297577-10298077 + 74 7.03e-08 tggcggtgat gatgatgatggtgatg atggtgatct chr16:89069058-89069558 + 31 7.03e-08 tggtgacgat gatgatgatggtgatg gtgatgatga chr6:167515978-167516478 - 7 7.03e-08 TGATGGTGAT GATGATGATGGTGATG AGGTGA chr17:22052628-22053128 - 84 9.15e-08 T GATGAGGATGGTGATG GTGAAGGTGG chr6:63635985-63636485 - 6 1.16e-07 TGTGGAAGGG GATGGGGGAGGGGAGG ATTGC chr17:78477683-78478183 - 7 1.45e-07 ATGTGGTAAT GATGATGGTGGTGATG ATAGCG chr12:107463079-10746357 + 63 1.45e-07 ggttgatgat gatgatggtggtgatg atgaaaatga chr5:3445584-3446084 + 22 1.45e-07 gtatgatggt gatgatggtggtgatg gtggtgatgg chrUn_KI270744v1:124874- + 2 2.20e-07 g gaggaaggagggaagg aaagaaggaa chr19:47608139-47608639 - 75 2.68e-07 AGCGGGAGTC GAGGATGAAGGAAATG GAGGGGATGG chr12:67592106-67592606 + 7 3.26e-07 gggagg gaggaagaaaggaagg agaaaagaga chr1:32471762-32472262 - 48 3.92e-07 TGGTACTGGT GATGATGGTAGTGATG ATGATGGTAC chr6:34942708-34943208 - 13 3.92e-07 AAAGGAAAAG GAGGGGGAAGGGAAGG GGAAAGGGAA chr17:81531946-81532446 + 62 4.74e-07 tggtggtgat gatagtgatggtgatg atgataatgg chr16:86464035-86464535 + 71 4.74e-07 tggtggtgat aatgatgatggtgatg gtaatgatgg chr1:18097107-18097607 - 61 4.74e-07 GAGAAGGAGG GAGGAAGGAAGAAAGG AAGGGAGGAA chr17:6651797-6652297 - 68 5.68e-07 CCGCTTCCCC GAGGGGGAGAGGGAGG GCCCCTCGCT chr1:155244584-155245084 + 74 8.17e-07 gcgagagaga gagagagagagagagg agCCGGCGCG chr10:1219869-1220369 + 83 8.17e-07 caatggtgat gatggtgatggtaatg at chr12:49060519-49061019 + 30 9.75e-07 TCGAGAGGGG GAGAAAGGAGAAGAGG CGGCCCTATT chr19:37778836-37779336 + 40 9.75e-07 AAGCAGCTGT GAGGAGGGAGGAGAGA AGCAGCAGCC chr5:173327961-173328461 - 82 1.16e-06 GAG GAGGAGGAGGAAGAGG GGAGCACAAA chr5:173284436-173284936 - 42 1.37e-06 TGGATGATTG GATGGATGAGGGGATG GATGGATGGA chr14:100239144-10023964 + 27 1.37e-06 AGTGGTGGGC GAggaggaggaggagg acgacgacga chr7:127259225-127259725 - 61 1.37e-06 TGGTGGTGGT GATAATGGTAGTGATG GTGGTGGTGG chrX:120309467-120309967 - 62 1.37e-06 CACACATACA GAGGGAGAGGGAGAGA GAGAGAGCGC chr1:201641718-201642218 - 41 1.61e-06 GAAAAAGAGA GAGAGAGAAAGGAAGG AAGGGAAGAA chr18:79569655-79570155 - 31 1.61e-06 GCTGTACTGA GACGGTGAAGGTGAGG GCGTGTCCTG chr1:200505321-200505821 + 20 1.61e-06 agaaagagaa gagagagaaaggaagg aaagtaaggg chr5:176591614-176592114 + 66 1.88e-06 ttgtgatggt gatggtggtgatgatg gtgttggtgt chr5:175620361-175620861 + 68 1.88e-06 tgatggtgag gatgatgatagcgatg gtgaatgatg chr6:16906552-16907052 + 63 1.88e-06 gagacacaga gagagagatggagaga gaggaaaaga chr12:389112-389612 - 73 2.20e-06 CCGGGGAAGA GAAGAAGAAGGAAAGG CCAGACACAC chr19:58305268-58305768 + 2 2.56e-06 c gagggtgattgtgagg gatggagagg chr5:2439399-2439899 - 48 2.56e-06 TGATGATCGT GATAGTGAAGATGATG ATAATGACAG chr19:40494158-40494658 - 70 2.56e-06 GAAGAGAGAA GAGAGGGAAGGAGAGA GAGAGGAAGG chr7:151842477-151842977 + 20 2.96e-06 ggtaggtagg gatgatggtagcgatg gtaggtagtg chr20:49278496-49278996 - 83 2.96e-06 CA AAGAAGGGAAGGGAGG ACCAGAGGTC chr1:231733029-231733529 + 66 2.96e-06 tggtgatggc aagagtggtggtgatg gtaggagtgg chr7:151276093-151276593 + 13 2.96e-06 atgccaggca ggggaaggagggaagg TGCCAGACAG chr19:31204157-31204657 - 68 3.93e-06 AAAAAGGGGA AAGAAAGAAGGAGAGA GGGAGGTAGG chrX:119456941-119457441 + 17 3.93e-06 gaaagaaaga aagaaagaaagaaagg aaggaaagaa chr10:72273109-72273609 + 84 3.93e-06 GCAAAGCAGG GATAGAGGGGGTAAGG G chr8:37697231-37697731 - 6 4.51e-06 TCCCGGGGAC GAGGAGGACGAGGAGG AGGTG chr16:5730641-5731141 - 54 4.51e-06 TGGCAGTGGA GATGTTGATGGTGATG ACAGTGGCAA chr5:138338137-138338637 - 26 4.51e-06 GGAGGGGAAA GAGGGAAGGAGGGAGG GACGGTTGAG chr4:77075940-77076440 + 53 5.16e-06 TTGGCACTAG GATGGAAGGAGGGAGG ACGTTTTCTC chr4:102827338-102827838 - 37 5.16e-06 GGTGAAGAGG CAGGAGGAGGGGGAGG GGCGGAGCGT chr18:22169491-22169991 - 29 5.16e-06 CGCGACGAGT AGGGGTGGAGGGGAGG AAAGCGGGGA chr1:6936955-6937455 - 49 5.16e-06 GTAAGTGGTG AATGATGATGGTGATA AGTGATGATT chr17:714270-714770 - 19 5.16e-06 CAGAAGGGAA AGTGGAGGTGGGGAGG TGGTGCGGGT chr6:24720318-24720818 + 12 5.16e-06 gaaaaacaaa gagaaagaTGGGGAGT TGGATTGGTA chr16:690171-690671 - 59 5.89e-06 TCCTGAGAGG GATGGGTAAGAAGAGG ACCACTTCCG chr1:3991936-3992436 + 36 5.89e-06 GAGGTGATGT CATGGGGGAGGTGATG CCATAGAGAG chr22_KI270733v1_random: - 35 5.89e-06 CAACCCCGTC GAGGGGGAAGCGGAGG AGGGTCCTCT chr21:39313584-39314084 + 52 6.71e-06 CGCAGCAGCG AGTGGGGGAGGGGAGG GCGCGTGGTC chr19:39823588-39824088 - 6 6.71e-06 CTGTGTGGGA GGGGGAGGCGGAGAGG AGTGG chr10:89707272-89707772 - 68 6.71e-06 GAAGAAGGGA AAGAAAGAAGTGGAGG GGAGAGGAGG chr1:161097509-161098009 - 2 7.62e-06 GAGAGAGAGA GAGAGAGAGAGAGAGA G chr21:32771745-32772245 + 5 7.62e-06 gagc gagagagagagagaga gagagagcga chr1:18858145-18858645 - 14 7.62e-06 TGATGGTGTT GGTGATGATGGCGATG GTAGTGATGC chr11:78188207-78188707 + 50 7.62e-06 ccatttcaca gatgggaatggcgagg ctgggataga chr6:16129083-16129583 + 75 7.62e-06 ACGCGGTGCT GATGGAGGTGGAGGTG GAGGCGAAAG chr1:32292102-32292602 + 48 8.64e-06 AGGAGGCTGC GAGGGGGAAGTCGAGG CTGAGGGAGG chr5:159098694-159099194 + 34 8.64e-06 aaggaaggaa gagaaagaaagaaaga aaaaagaaaa chr20:31066741-31067241 + 56 8.64e-06 gaatcaaccc gagaagaatggaaagg aaaggaatgg chr19:55519625-55520125 + 81 9.77e-06 gtgatgaggc aatgatggtaatgatg gtga chr18:50280898-50281398 - 29 9.77e-06 GGGATCCTGG GACGAGGACGGAGAGG AATGGTGGAG chr1:32334802-32335302 - 41 9.77e-06 CTTATCCCCC AAGGGTGAAGGGGAGT CGCCCCCTGT chr1:236163652-236164152 - 79 1.10e-05 TGGGAG GAGATGGGAGGAGATG TGAAAAGTGT chr17:68511916-68512416 + 46 1.10e-05 GGCAGGTGAG CAGGAAGGAGGAGAGA ACCGGGCTAG chr1:25998119-25998619 - 66 1.24e-05 ACTATTTGAG GAGGGTGAGGCGGAGG GTTACGCACG chr19:44206776-44207276 + 56 1.24e-05 TTTaaaatta gagaaagaatatgagg cctaggacga chr21:25607259-25607759 - 47 1.40e-05 GTTTCCGGGG GAGGAGGGCGGAGAAG GACTTGCGCG chr5:37379247-37379747 - 19 1.40e-05 TCACTGGAGC AAGAGGAAAAGAGAGG CGGCCTAGTT chr19:39135785-39136285 - 41 1.40e-05 GTGTGACCAG GAAGGGGGTGGCGAGG AAGGGGGGTG chr10:18557696-18558196 + 37 1.75e-05 tggaagggaa aatggagaatggaagg taatcaagaa chr1:45521502-45522002 + 51 1.96e-05 GGGCCCCGGA CAGGAGGAGGAAGAGG CAACAGGCAA chr19:40602870-40603370 - 42 1.96e-05 GGGAGGTGGG AGGGAAGAATGAGAGG GAATTTCACT chr16:1308270-1308770 + 32 2.19e-05 tgaatgagta agtgagggagggaatg agtgagtgag chr5:43042251-43042751 + 6 2.19e-05 ACTCT GAGAAAAAAAGAGAAG TTCGGCTACC chr12:57520072-57520572 - 21 2.19e-05 GACCGTCCGA GAGAGGAATGGGGAGA GTCCCTTATT chr2:240950966-240951466 - 26 2.19e-05 CAGACGGATG GATGAATGAATGGATG GACAGATGGA chr22:38681864-38682364 + 11 2.44e-05 ggaggagctg gaggaggacgacgatg aggaggTACT chr12:6533060-6533560 - 35 2.44e-05 GAACACTTGT AAGGAAGGGGGTGGGG TGGGGTGGCC chr10:679460-679960 - 2 2.44e-05 GTGTGGGGAG CATGGGTATGGGGAGG A chr10:101694480-10169498 - 54 2.44e-05 AGTATGGGAA GAAGGAGGAATGGAGG GTCAGGGCTA chr19:40529465-40529965 - 22 2.71e-05 ATGGAATGCA AGGGAAGGAGGGGAAG ACAGCAGGTC chr12:130584380-13058488 - 15 2.71e-05 ATGTAATGGT CATGATAGTGGTGATG TAATGGTGGT chr19:8107270-8107770 + 26 2.71e-05 tggatggatg gatggatgaatggatg gaaggatgag chr17:59619578-59620078 + 58 2.71e-05 GGGTACATAA GGCGGAGGGGGTGAGG CGACTGGGCG chr15:98852629-98853129 - 23 2.71e-05 AGAAAGCCAG AATAAGGGCAGGGATG CCGGGGGAAG chr17:74514007-74514507 + 7 3.01e-05 tcatgt gatgggtgatgggatg ggcgatgtca chr17:59209705-59210205 + 10 3.01e-05 AAACAAACT AGGAGAGGAGAAGAGG AGGCGGAACT chr5:93582468-93582968 - 61 3.34e-05 AGGGGGAAGG GATGACGAGGGGGAGA ACGCCTAGCG chr1:205211018-205211518 - 14 3.34e-05 CCCGGAGGGA GAGAGGGCAGGAGAGG CAAATCGGAG chr17:8186822-8187322 - 23 3.69e-05 ATACGAAAAT GAGGAAAGGATGGATG CAGCTGGGAA chr19:33434704-33435204 + 11 3.69e-05 AAGGTTGGGG GGTGGTGGGGTGGAGG GGGCAGGTAC chr15:98437773-98438273 + 78 4.08e-05 acggatgatg gatggatagatggatg aatggat chr17:74203575-74204075 + 25 4.08e-05 GGTCCGCGTG GAGGGTGTCGGGGAGG AGAAGGGGAG chr19:47228641-47229141 + 4 4.50e-05 CAC AGGGAGGGCAGTGAGG CACAGCGAGG chr15:66504472-66504972 - 2 4.50e-05 GATAGAGCGA GGAGAGGGAGATGAGG A chr1:183060659-183061159 + 34 4.50e-05 GTTTGTGTAA AATAgagataggaaga tatgatcact chr19:480623-481123 + 63 4.50e-05 GATGATGGAG AACGATGATGGAGAAG GAATGTGGGA chr1:183471823-183472323 + 50 4.95e-05 CGGCAGGAGT GATAAGAAGGGGGAAG ACTTTGAGTG chr12:123601772-12360227 - 12 4.95e-05 TCCCACGCCG CGGGAGGGAGGAAAGG CGTCCGCGGG chr19:53979195-53979695 + 57 4.95e-05 AGGGGGTGTG GAGAGAGGTAGTAAGT GATTTGCGGG chr17:79498386-79498886 - 25 4.95e-05 CTTATGGATG GATGGATGGATAGATG CATGGATGGA chr19:30426787-30427287 - 1 5.44e-05 ATGGATGTTG GATGGATGGATGGATG chr10:1495715-1496215 - 82 5.44e-05 GAT GATGATGACTATGATG ATGACAATAG chr6:36594243-36594743 + 52 5.44e-05 AGAGACCAGC GAAAGAGGGAATGAGG TGGAAATGGA chr15:73699632-73700132 - 53 5.44e-05 CCATTTTACA GACAAGGAAATGGAGG CTAAGAACAG chr10:6259076-6259576 - 63 5.97e-05 TGGATGGGTG GATGGGTAGATGGATG GATGTAGATG chr21:26843515-26844015 - 54 6.55e-05 CTCACGGGAG GGCGGATGTGGAGAGG GCAGAGGAGC chr14:106390790-10639129 - 1 6.55e-05 GGTGACATCG GGGATTGGTGGTGATG chr19:39411872-39412372 + 81 7.17e-05 TATAAAAACT GATGGGGAAAAAAAgt gctc chr19:40799410-40799910 - 42 7.17e-05 CGCGGCGACA GAGGAAAGGACGGAGG AGGGTGCACG chr19:3776454-3776954 + 57 7.17e-05 tgggtgggtg gatggatgagtggata gtgggtagat chr6:26285229-26285729 - 43 7.17e-05 GTCTGGCCGT GGTAAAGGTGGAAAAG GTTTGGGTAA chr19:49929086-49929586 - 58 7.85e-05 GCCTCGGCTG AAGAAAGAAGGTGGGA GCGGAGAGCG chr10:42782478-42782978 - 61 8.57e-05 TGACTCGCCG GAGGGAAACAAGAAGG CAGAAAAAAG chr19:44208128-44208628 - 23 8.57e-05 TCGGCTAGCA GATGAGGTAAGAGAAG TTTTATTACT chr17:26885527-26886027 - 71 8.57e-05 TGTGGTTTGT GGTGGAAAAGGAAATA TCTTCACCTA chr17:78558415-78558915 - 18 8.57e-05 GTCAGCCACC CATGGTGATGATGATA TCATCCACCT chr2:85539084-85539584 - 53 8.57e-05 GACCGACTCT GAGGTGAAAAGGAATG TGCCCTCCTC chr6:27495616-27496116 + 11 9.35e-05 gtcgtggccg agtggttaaggcgatg gactagaaat chr19:40522884-40523384 - 43 9.35e-05 TCTTTTTGGC AGGGAGGGAGCAGATG GAGTCTCACT chr19:39436259-39436759 - 28 1.02e-04 ATTCTGGTGA AAGGGAGATTCTGAGG GGAAGGGGCT chr7:105013111-105013611 - 73 1.02e-04 AATGTGCGGG GAGGGGAGTGGGAATT CCTTTATATG chr15:65610824-65611324 - 61 1.11e-04 CGATGGGCAC GGGGTGAGTGGGGAGG CCGAGGGCCC chr6:32972035-32972535 - 51 1.11e-04 CAAGCGGATG GAGGTGGATTGTAATG GCGGCCCCGG chr10:75110684-75111184 - 5 1.11e-04 GAACCCGGGA AATGGAGGTTGCAATG AGCC chr1:204516396-204516896 + 73 1.11e-04 GAAGGGCTCG GGGGGAGGGGAAGAGT TGTGGGATGA chr19:40804776-40805276 + 52 1.11e-04 GAGGCGTCCT GGGGAGGGTGAGGATT GAAGCAGCCC chr21:25591149-25591649 + 39 1.11e-04 acaaggtaca gacagaaaaagagaga aatctgaaaa chr1:20486456-20486956 - 33 1.11e-04 AGCCGGGGCG GGAGGAGAGTGTGAGG CCCCAGTGGC chr10:22229112-22229612 + 16 1.20e-04 GCCGGGAGAG GACAGCGGGGGAGAGG AGGCCGCTCT chr12:49294330-49294830 + 85 1.20e-04 ACAGGGCCCT GGGGATTAGGGAGAGT chr10:132965236-13296573 - 55 1.20e-04 AGTGAGGAGT GGGAACGGTGGGAAGG TGACACCGGT chr19:39997158-39997658 - 76 1.20e-04 CGAGGCCGT GAGGAGGGTAGAGGGT CAGTGACACA chr7:148605098-148605598 - 50 1.20e-04 TCACAAAGCT GAGCATAGAAGGGAGG AGTTGGAGCT chr10:3314535-3315035 + 54 1.31e-04 GGTGACTTCA AAGAGTGAGGGAAGGG GAGGGTGACT chr10:13301905-13302405 - 56 1.31e-04 GTGCAAACAG GAAGGGGCTGGTGATG CTGGCTGCGG chr12:56041903-56042403 - 31 1.42e-04 GCACGGACCG GAGAGAGGAGACGGTG CCTGGCAGGG chr3:15860045-15860545 + 60 1.54e-04 GTGGGGAGCC AAGGAGTGGGATGAGA GGTGGTCACG chr5:10182761-10183261 + 56 1.54e-04 catcatcact ggtgattacagaaatg taaatgaaaa chr5:79612394-79612894 - 58 1.66e-04 CTCCCGAACC AAAGGAGGTAGTGGTG GCCCGTGGGA chr5:124154539-124155039 + 37 1.66e-04 gcaatataca catgatgaaaacaatg ccaaggcaaa chr2:74198504-74199004 - 4 1.80e-04 GCGAGGTGGA AAGGGCGAAGGCGAAG GGA chr17:39153614-39154114 + 61 1.80e-04 GGCGTTCCCG AAGGGAAGTGGAAGTG GGGTAAGACG chr16:77212385-77212885 + 53 1.80e-04 CGGGGCCGGC gagggagaggtaggga gcccgaggaa chr17:82462023-82462523 + 28 1.80e-04 AATTCAGGGT GGGAGTGTAGGGAAGG GCACTGGCAC chr9:133030737-133031237 + 4 1.94e-04 CGG AACAATTGAGGCGAGG CCTTTGGGAG chr15:68279352-68279852 - 28 1.94e-04 ACTGACTTCA AAAGAAAAAAAAAATG CTAAAATAGC chrX:53224869-53225369 - 14 2.09e-04 GGAAGAAACG GAGCGGGACGAAGAGG CGGTAGCAGT chr14:103520979-10352147 + 33 2.09e-04 GAGGGAAAGC GGAGGTAGCGGGGAGG GAGGACGCCG chr1:94479822-94480322 + 72 2.25e-04 TATTAACATT AAAAAAGAAGGCAAGA AAAAGAGGTC chr7:149126363-149126863 + 23 2.42e-04 AGAGCAGGAA CAGGGAGAGAGTAGGG ACAGCGACTG chr1:226309393-226309893 - 61 2.42e-04 TCTCGGGAAA AGTGAGGGGACGGAGG CGCCCAAGCA chr3:57555936-57556436 - 7 2.61e-04 CACGATAGGT CAGAATTATAGGGAAG TGAAGA chr5:6378217-6378717 - 55 2.80e-04 GACGGGCCGA GGCGATGGCGGAGAAG TTTGACCACC chr21:39183013-39183513 - 33 3.00e-04 CTGCAGCTGG CGCGGAAGAGGTGAGG CACCGGGATA chr19:43640011-43640511 + 14 3.00e-04 GAGGCTGTGC GAGGGTGGGGGCGCGG GCGTCGTGGG chr1:113931658-113932158 - 80 3.22e-04 GGGAA GATAACGGGAGGAATA ATAGTAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKGRDGRDGGDGAKG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:40295027-40295527 3.7e-08 43_[-2]_41 chr7:566093-566593 7e-08 1_[-2]_83 chr12:132349433-13234993 7e-08 69_[-2]_15 chr22:27008517-27009017 7e-08 65_[-2]_19 chr17:10297577-10298077 7e-08 73_[+2]_11 chr16:89069058-89069558 7e-08 30_[+2]_54 chr6:167515978-167516478 7e-08 6_[-2]_78 chr17:22052628-22053128 9.2e-08 83_[-2]_1 chr6:63635985-63636485 1.2e-07 5_[-2]_79 chr17:78477683-78478183 1.5e-07 6_[-2]_78 chr12:107463079-10746357 1.5e-07 62_[+2]_22 chr5:3445584-3446084 1.5e-07 21_[+2]_63 chrUn_KI270744v1:124874- 2.2e-07 1_[+2]_83 chr19:47608139-47608639 2.7e-07 74_[-2]_10 chr12:67592106-67592606 3.3e-07 6_[+2]_78 chr1:32471762-32472262 3.9e-07 47_[-2]_37 chr6:34942708-34943208 3.9e-07 12_[-2]_72 chr17:81531946-81532446 4.7e-07 61_[+2]_23 chr16:86464035-86464535 4.7e-07 70_[+2]_14 chr1:18097107-18097607 4.7e-07 60_[-2]_24 chr17:6651797-6652297 5.7e-07 67_[-2]_17 chr1:155244584-155245084 8.2e-07 73_[+2]_11 chr10:1219869-1220369 8.2e-07 82_[+2]_2 chr12:49060519-49061019 9.8e-07 29_[+2]_55 chr19:37778836-37779336 9.8e-07 39_[+2]_45 chr5:173327961-173328461 1.2e-06 81_[-2]_3 chr5:173284436-173284936 1.4e-06 41_[-2]_43 chr14:100239144-10023964 1.4e-06 26_[+2]_58 chr7:127259225-127259725 1.4e-06 60_[-2]_24 chrX:120309467-120309967 1.4e-06 61_[-2]_23 chr1:201641718-201642218 1.6e-06 40_[-2]_44 chr18:79569655-79570155 1.6e-06 30_[-2]_54 chr1:200505321-200505821 1.6e-06 19_[+2]_65 chr5:176591614-176592114 1.9e-06 65_[+2]_19 chr5:175620361-175620861 1.9e-06 67_[+2]_17 chr6:16906552-16907052 1.9e-06 62_[+2]_22 chr12:389112-389612 2.2e-06 72_[-2]_12 chr19:58305268-58305768 2.6e-06 1_[+2]_83 chr5:2439399-2439899 2.6e-06 47_[-2]_37 chr19:40494158-40494658 2.6e-06 69_[-2]_15 chr7:151842477-151842977 3e-06 19_[+2]_65 chr20:49278496-49278996 3e-06 82_[-2]_2 chr1:231733029-231733529 3e-06 65_[+2]_19 chr7:151276093-151276593 3e-06 12_[+2]_72 chr19:31204157-31204657 3.9e-06 67_[-2]_17 chrX:119456941-119457441 3.9e-06 16_[+2]_68 chr10:72273109-72273609 3.9e-06 83_[+2]_1 chr8:37697231-37697731 4.5e-06 5_[-2]_79 chr16:5730641-5731141 4.5e-06 53_[-2]_31 chr5:138338137-138338637 4.5e-06 25_[-2]_59 chr4:77075940-77076440 5.2e-06 52_[+2]_32 chr4:102827338-102827838 5.2e-06 36_[-2]_48 chr18:22169491-22169991 5.2e-06 28_[-2]_56 chr1:6936955-6937455 5.2e-06 48_[-2]_36 chr17:714270-714770 5.2e-06 18_[-2]_66 chr6:24720318-24720818 5.2e-06 11_[+2]_73 chr16:690171-690671 5.9e-06 58_[-2]_26 chr1:3991936-3992436 5.9e-06 35_[+2]_49 chr22_KI270733v1_random: 5.9e-06 34_[-2]_50 chr21:39313584-39314084 6.7e-06 51_[+2]_33 chr19:39823588-39824088 6.7e-06 5_[-2]_79 chr10:89707272-89707772 6.7e-06 67_[-2]_17 chr1:161097509-161098009 7.6e-06 1_[-2]_83 chr21:32771745-32772245 7.6e-06 4_[+2]_80 chr1:18858145-18858645 7.6e-06 13_[-2]_71 chr11:78188207-78188707 7.6e-06 49_[+2]_35 chr6:16129083-16129583 7.6e-06 74_[+2]_10 chr1:32292102-32292602 8.6e-06 47_[+2]_37 chr5:159098694-159099194 8.6e-06 33_[+2]_51 chr20:31066741-31067241 8.6e-06 55_[+2]_29 chr19:55519625-55520125 9.8e-06 80_[+2]_4 chr18:50280898-50281398 9.8e-06 28_[-2]_56 chr1:32334802-32335302 9.8e-06 40_[-2]_44 chr1:236163652-236164152 1.1e-05 78_[-2]_6 chr17:68511916-68512416 1.1e-05 45_[+2]_39 chr1:25998119-25998619 1.2e-05 65_[-2]_19 chr19:44206776-44207276 1.2e-05 55_[+2]_29 chr21:25607259-25607759 1.4e-05 46_[-2]_38 chr5:37379247-37379747 1.4e-05 18_[-2]_66 chr19:39135785-39136285 1.4e-05 40_[-2]_44 chr10:18557696-18558196 1.8e-05 36_[+2]_48 chr1:45521502-45522002 2e-05 50_[+2]_34 chr19:40602870-40603370 2e-05 41_[-2]_43 chr16:1308270-1308770 2.2e-05 31_[+2]_53 chr5:43042251-43042751 2.2e-05 5_[+2]_79 chr12:57520072-57520572 2.2e-05 20_[-2]_64 chr2:240950966-240951466 2.2e-05 25_[-2]_59 chr22:38681864-38682364 2.4e-05 10_[+2]_74 chr12:6533060-6533560 2.4e-05 34_[-2]_50 chr10:679460-679960 2.4e-05 1_[-2]_83 chr10:101694480-10169498 2.4e-05 53_[-2]_31 chr19:40529465-40529965 2.7e-05 21_[-2]_63 chr12:130584380-13058488 2.7e-05 14_[-2]_70 chr19:8107270-8107770 2.7e-05 25_[+2]_59 chr17:59619578-59620078 2.7e-05 57_[+2]_27 chr15:98852629-98853129 2.7e-05 22_[-2]_62 chr17:74514007-74514507 3e-05 6_[+2]_78 chr17:59209705-59210205 3e-05 9_[+2]_75 chr5:93582468-93582968 3.3e-05 60_[-2]_24 chr1:205211018-205211518 3.3e-05 13_[-2]_71 chr17:8186822-8187322 3.7e-05 22_[-2]_62 chr19:33434704-33435204 3.7e-05 10_[+2]_74 chr15:98437773-98438273 4.1e-05 77_[+2]_7 chr17:74203575-74204075 4.1e-05 24_[+2]_60 chr19:47228641-47229141 4.5e-05 3_[+2]_81 chr15:66504472-66504972 4.5e-05 1_[-2]_83 chr1:183060659-183061159 4.5e-05 33_[+2]_51 chr19:480623-481123 4.5e-05 62_[+2]_22 chr1:183471823-183472323 4.9e-05 49_[+2]_35 chr12:123601772-12360227 4.9e-05 11_[-2]_73 chr19:53979195-53979695 4.9e-05 56_[+2]_28 chr17:79498386-79498886 4.9e-05 24_[-2]_60 chr19:30426787-30427287 5.4e-05 [-2]_84 chr10:1495715-1496215 5.4e-05 81_[-2]_3 chr6:36594243-36594743 5.4e-05 51_[+2]_33 chr15:73699632-73700132 5.4e-05 52_[-2]_32 chr10:6259076-6259576 6e-05 62_[-2]_22 chr21:26843515-26844015 6.6e-05 53_[-2]_31 chr14:106390790-10639129 6.6e-05 [-2]_84 chr19:39411872-39412372 7.2e-05 80_[+2]_4 chr19:40799410-40799910 7.2e-05 41_[-2]_43 chr19:3776454-3776954 7.2e-05 56_[+2]_28 chr6:26285229-26285729 7.2e-05 42_[-2]_42 chr19:49929086-49929586 7.8e-05 57_[-2]_27 chr10:42782478-42782978 8.6e-05 60_[-2]_24 chr19:44208128-44208628 8.6e-05 22_[-2]_62 chr17:26885527-26886027 8.6e-05 70_[-2]_14 chr17:78558415-78558915 8.6e-05 17_[-2]_67 chr2:85539084-85539584 8.6e-05 52_[-2]_32 chr6:27495616-27496116 9.4e-05 10_[+2]_74 chr19:40522884-40523384 9.4e-05 42_[-2]_42 chr19:39436259-39436759 0.0001 27_[-2]_57 chr7:105013111-105013611 0.0001 72_[-2]_12 chr15:65610824-65611324 0.00011 60_[-2]_24 chr6:32972035-32972535 0.00011 50_[-2]_34 chr10:75110684-75111184 0.00011 4_[-2]_80 chr1:204516396-204516896 0.00011 72_[+2]_12 chr19:40804776-40805276 0.00011 51_[+2]_33 chr21:25591149-25591649 0.00011 38_[+2]_46 chr1:20486456-20486956 0.00011 32_[-2]_52 chr10:22229112-22229612 0.00012 15_[+2]_69 chr12:49294330-49294830 0.00012 84_[+2] chr10:132965236-13296573 0.00012 54_[-2]_30 chr19:39997158-39997658 0.00012 75_[-2]_9 chr7:148605098-148605598 0.00012 49_[-2]_35 chr10:3314535-3315035 0.00013 53_[+2]_31 chr10:13301905-13302405 0.00013 55_[-2]_29 chr12:56041903-56042403 0.00014 30_[-2]_54 chr3:15860045-15860545 0.00015 59_[+2]_25 chr5:10182761-10183261 0.00015 55_[+2]_29 chr5:79612394-79612894 0.00017 57_[-2]_27 chr5:124154539-124155039 0.00017 36_[+2]_48 chr2:74198504-74199004 0.00018 3_[-2]_81 chr17:39153614-39154114 0.00018 60_[+2]_24 chr16:77212385-77212885 0.00018 52_[+2]_32 chr17:82462023-82462523 0.00018 27_[+2]_57 chr9:133030737-133031237 0.00019 3_[+2]_81 chr15:68279352-68279852 0.00019 27_[-2]_57 chrX:53224869-53225369 0.00021 13_[-2]_71 chr14:103520979-10352147 0.00021 32_[+2]_52 chr1:94479822-94480322 0.00023 71_[+2]_13 chr7:149126363-149126863 0.00024 22_[+2]_62 chr1:226309393-226309893 0.00024 60_[-2]_24 chr3:57555936-57556436 0.00026 6_[-2]_78 chr5:6378217-6378717 0.00028 54_[-2]_30 chr21:39183013-39183513 0.0003 32_[-2]_52 chr19:43640011-43640511 0.0003 13_[+2]_71 chr1:113931658-113932158 0.00032 79_[-2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKGRDGRDGGDGAKG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAKGRDGRDGGDGAKG width=16 seqs=168 chr4:40295027-40295527 ( 44) GATGGAGATGGAGATG 1 chr7:566093-566593 ( 2) GATGATGATGGTGATG 1 chr12:132349433-13234993 ( 70) GATGATGATGGTGATG 1 chr22:27008517-27009017 ( 66) GATGATGATGGTGATG 1 chr17:10297577-10298077 ( 74) GATGATGATGGTGATG 1 chr16:89069058-89069558 ( 31) GATGATGATGGTGATG 1 chr6:167515978-167516478 ( 7) GATGATGATGGTGATG 1 chr17:22052628-22053128 ( 84) GATGAGGATGGTGATG 1 chr6:63635985-63636485 ( 6) GATGGGGGAGGGGAGG 1 chr17:78477683-78478183 ( 7) GATGATGGTGGTGATG 1 chr12:107463079-10746357 ( 63) GATGATGGTGGTGATG 1 chr5:3445584-3446084 ( 22) GATGATGGTGGTGATG 1 chrUn_KI270744v1:124874- ( 2) GAGGAAGGAGGGAAGG 1 chr19:47608139-47608639 ( 75) GAGGATGAAGGAAATG 1 chr12:67592106-67592606 ( 7) GAGGAAGAAAGGAAGG 1 chr1:32471762-32472262 ( 48) GATGATGGTAGTGATG 1 chr6:34942708-34943208 ( 13) GAGGGGGAAGGGAAGG 1 chr17:81531946-81532446 ( 62) GATAGTGATGGTGATG 1 chr16:86464035-86464535 ( 71) AATGATGATGGTGATG 1 chr1:18097107-18097607 ( 61) GAGGAAGGAAGAAAGG 1 chr17:6651797-6652297 ( 68) GAGGGGGAGAGGGAGG 1 chr1:155244584-155245084 ( 74) GAGAGAGAGAGAGAGG 1 chr10:1219869-1220369 ( 83) GATGGTGATGGTAATG 1 chr12:49060519-49061019 ( 30) GAGAAAGGAGAAGAGG 1 chr19:37778836-37779336 ( 40) GAGGAGGGAGGAGAGA 1 chr5:173327961-173328461 ( 82) GAGGAGGAGGAAGAGG 1 chr5:173284436-173284936 ( 42) GATGGATGAGGGGATG 1 chr14:100239144-10023964 ( 27) GAGGAGGAGGAGGAGG 1 chr7:127259225-127259725 ( 61) GATAATGGTAGTGATG 1 chrX:120309467-120309967 ( 62) GAGGGAGAGGGAGAGA 1 chr1:201641718-201642218 ( 41) GAGAGAGAAAGGAAGG 1 chr18:79569655-79570155 ( 31) GACGGTGAAGGTGAGG 1 chr1:200505321-200505821 ( 20) GAGAGAGAAAGGAAGG 1 chr5:176591614-176592114 ( 66) GATGGTGGTGATGATG 1 chr5:175620361-175620861 ( 68) GATGATGATAGCGATG 1 chr6:16906552-16907052 ( 63) GAGAGAGATGGAGAGA 1 chr12:389112-389612 ( 73) GAAGAAGAAGGAAAGG 1 chr19:58305268-58305768 ( 2) GAGGGTGATTGTGAGG 1 chr5:2439399-2439899 ( 48) GATAGTGAAGATGATG 1 chr19:40494158-40494658 ( 70) GAGAGGGAAGGAGAGA 1 chr7:151842477-151842977 ( 20) GATGATGGTAGCGATG 1 chr20:49278496-49278996 ( 83) AAGAAGGGAAGGGAGG 1 chr1:231733029-231733529 ( 66) AAGAGTGGTGGTGATG 1 chr7:151276093-151276593 ( 13) GGGGAAGGAGGGAAGG 1 chr19:31204157-31204657 ( 68) AAGAAAGAAGGAGAGA 1 chrX:119456941-119457441 ( 17) AAGAAAGAAAGAAAGG 1 chr10:72273109-72273609 ( 84) GATAGAGGGGGTAAGG 1 chr8:37697231-37697731 ( 6) GAGGAGGACGAGGAGG 1 chr16:5730641-5731141 ( 54) GATGTTGATGGTGATG 1 chr5:138338137-138338637 ( 26) GAGGGAAGGAGGGAGG 1 chr4:77075940-77076440 ( 53) GATGGAAGGAGGGAGG 1 chr4:102827338-102827838 ( 37) CAGGAGGAGGGGGAGG 1 chr18:22169491-22169991 ( 29) AGGGGTGGAGGGGAGG 1 chr1:6936955-6937455 ( 49) AATGATGATGGTGATA 1 chr17:714270-714770 ( 19) AGTGGAGGTGGGGAGG 1 chr6:24720318-24720818 ( 12) GAGAAAGATGGGGAGT 1 chr16:690171-690671 ( 59) GATGGGTAAGAAGAGG 1 chr1:3991936-3992436 ( 36) CATGGGGGAGGTGATG 1 chr22_KI270733v1_random: ( 35) GAGGGGGAAGCGGAGG 1 chr21:39313584-39314084 ( 52) AGTGGGGGAGGGGAGG 1 chr19:39823588-39824088 ( 6) GGGGGAGGCGGAGAGG 1 chr10:89707272-89707772 ( 68) AAGAAAGAAGTGGAGG 1 chr1:161097509-161098009 ( 2) GAGAGAGAGAGAGAGA 1 chr21:32771745-32772245 ( 5) GAGAGAGAGAGAGAGA 1 chr1:18858145-18858645 ( 14) GGTGATGATGGCGATG 1 chr11:78188207-78188707 ( 50) GATGGGAATGGCGAGG 1 chr6:16129083-16129583 ( 75) GATGGAGGTGGAGGTG 1 chr1:32292102-32292602 ( 48) GAGGGGGAAGTCGAGG 1 chr5:159098694-159099194 ( 34) GAGAAAGAAAGAAAGA 1 chr20:31066741-31067241 ( 56) GAGAAGAATGGAAAGG 1 chr19:55519625-55520125 ( 81) AATGATGGTAATGATG 1 chr18:50280898-50281398 ( 29) GACGAGGACGGAGAGG 1 chr1:32334802-32335302 ( 41) AAGGGTGAAGGGGAGT 1 chr1:236163652-236164152 ( 79) GAGATGGGAGGAGATG 1 chr17:68511916-68512416 ( 46) CAGGAAGGAGGAGAGA 1 chr1:25998119-25998619 ( 66) GAGGGTGAGGCGGAGG 1 chr19:44206776-44207276 ( 56) GAGAAAGAATATGAGG 1 chr21:25607259-25607759 ( 47) GAGGAGGGCGGAGAAG 1 chr5:37379247-37379747 ( 19) AAGAGGAAAAGAGAGG 1 chr19:39135785-39136285 ( 41) GAAGGGGGTGGCGAGG 1 chr10:18557696-18558196 ( 37) AATGGAGAATGGAAGG 1 chr1:45521502-45522002 ( 51) CAGGAGGAGGAAGAGG 1 chr19:40602870-40603370 ( 42) AGGGAAGAATGAGAGG 1 chr16:1308270-1308770 ( 32) AGTGAGGGAGGGAATG 1 chr5:43042251-43042751 ( 6) GAGAAAAAAAGAGAAG 1 chr12:57520072-57520572 ( 21) GAGAGGAATGGGGAGA 1 chr2:240950966-240951466 ( 26) GATGAATGAATGGATG 1 chr22:38681864-38682364 ( 11) GAGGAGGACGACGATG 1 chr12:6533060-6533560 ( 35) AAGGAAGGGGGTGGGG 1 chr10:679460-679960 ( 2) CATGGGTATGGGGAGG 1 chr10:101694480-10169498 ( 54) GAAGGAGGAATGGAGG 1 chr19:40529465-40529965 ( 22) AGGGAAGGAGGGGAAG 1 chr12:130584380-13058488 ( 15) CATGATAGTGGTGATG 1 chr19:8107270-8107770 ( 26) GATGGATGAATGGATG 1 chr17:59619578-59620078 ( 58) GGCGGAGGGGGTGAGG 1 chr15:98852629-98853129 ( 23) AATAAGGGCAGGGATG 1 chr17:74514007-74514507 ( 7) GATGGGTGATGGGATG 1 chr17:59209705-59210205 ( 10) AGGAGAGGAGAAGAGG 1 chr5:93582468-93582968 ( 61) GATGACGAGGGGGAGA 1 chr1:205211018-205211518 ( 14) GAGAGGGCAGGAGAGG 1 chr17:8186822-8187322 ( 23) GAGGAAAGGATGGATG 1 chr19:33434704-33435204 ( 11) GGTGGTGGGGTGGAGG 1 chr15:98437773-98438273 ( 78) GATGGATAGATGGATG 1 chr17:74203575-74204075 ( 25) GAGGGTGTCGGGGAGG 1 chr19:47228641-47229141 ( 4) AGGGAGGGCAGTGAGG 1 chr15:66504472-66504972 ( 2) GGAGAGGGAGATGAGG 1 chr1:183060659-183061159 ( 34) AATAGAGATAGGAAGA 1 chr19:480623-481123 ( 63) AACGATGATGGAGAAG 1 chr1:183471823-183472323 ( 50) GATAAGAAGGGGGAAG 1 chr12:123601772-12360227 ( 12) CGGGAGGGAGGAAAGG 1 chr19:53979195-53979695 ( 57) GAGAGAGGTAGTAAGT 1 chr17:79498386-79498886 ( 25) GATGGATGGATAGATG 1 chr19:30426787-30427287 ( 1) GATGGATGGATGGATG 1 chr10:1495715-1496215 ( 82) GATGATGACTATGATG 1 chr6:36594243-36594743 ( 52) GAAAGAGGGAATGAGG 1 chr15:73699632-73700132 ( 53) GACAAGGAAATGGAGG 1 chr10:6259076-6259576 ( 63) GATGGGTAGATGGATG 1 chr21:26843515-26844015 ( 54) GGCGGATGTGGAGAGG 1 chr14:106390790-10639129 ( 1) GGGATTGGTGGTGATG 1 chr19:39411872-39412372 ( 81) GATGGGGAAAAAAAGT 1 chr19:40799410-40799910 ( 42) GAGGAAAGGACGGAGG 1 chr19:3776454-3776954 ( 57) GATGGATGAGTGGATA 1 chr6:26285229-26285729 ( 43) GGTAAAGGTGGAAAAG 1 chr19:49929086-49929586 ( 58) AAGAAAGAAGGTGGGA 1 chr10:42782478-42782978 ( 61) GAGGGAAACAAGAAGG 1 chr19:44208128-44208628 ( 23) GATGAGGTAAGAGAAG 1 chr17:26885527-26886027 ( 71) GGTGGAAAAGGAAATA 1 chr17:78558415-78558915 ( 18) CATGGTGATGATGATA 1 chr2:85539084-85539584 ( 53) GAGGTGAAAAGGAATG 1 chr6:27495616-27496116 ( 11) AGTGGTTAAGGCGATG 1 chr19:40522884-40523384 ( 43) AGGGAGGGAGCAGATG 1 chr19:39436259-39436759 ( 28) AAGGGAGATTCTGAGG 1 chr7:105013111-105013611 ( 73) GAGGGGAGTGGGAATT 1 chr15:65610824-65611324 ( 61) GGGGTGAGTGGGGAGG 1 chr6:32972035-32972535 ( 51) GAGGTGGATTGTAATG 1 chr10:75110684-75111184 ( 5) AATGGAGGTTGCAATG 1 chr1:204516396-204516896 ( 73) GGGGGAGGGGAAGAGT 1 chr19:40804776-40805276 ( 52) GGGGAGGGTGAGGATT 1 chr21:25591149-25591649 ( 39) GACAGAAAAAGAGAGA 1 chr1:20486456-20486956 ( 33) GGAGGAGAGTGTGAGG 1 chr10:22229112-22229612 ( 16) GACAGCGGGGGAGAGG 1 chr12:49294330-49294830 ( 85) GGGGATTAGGGAGAGT 1 chr10:132965236-13296573 ( 55) GGGAACGGTGGGAAGG 1 chr19:39997158-39997658 ( 76) GAGGAGGGTAGAGGGT 1 chr7:148605098-148605598 ( 50) GAGCATAGAAGGGAGG 1 chr10:3314535-3315035 ( 54) AAGAGTGAGGGAAGGG 1 chr10:13301905-13302405 ( 56) GAAGGGGCTGGTGATG 1 chr12:56041903-56042403 ( 31) GAGAGAGGAGACGGTG 1 chr3:15860045-15860545 ( 60) AAGGAGTGGGATGAGA 1 chr5:10182761-10183261 ( 56) GGTGATTACAGAAATG 1 chr5:79612394-79612894 ( 58) AAAGGAGGTAGTGGTG 1 chr5:124154539-124155039 ( 37) CATGATGAAAACAATG 1 chr2:74198504-74199004 ( 4) AAGGGCGAAGGCGAAG 1 chr17:39153614-39154114 ( 61) AAGGGAAGTGGAAGTG 1 chr16:77212385-77212885 ( 53) GAGGGAGAGGTAGGGA 1 chr17:82462023-82462523 ( 28) GGGAGTGTAGGGAAGG 1 chr9:133030737-133031237 ( 4) AACAATTGAGGCGAGG 1 chr15:68279352-68279852 ( 28) AAAGAAAAAAAAAATG 1 chrX:53224869-53225369 ( 14) GAGCGGGACGAAGAGG 1 chr14:103520979-10352147 ( 33) GGAGGTAGCGGGGAGG 1 chr1:94479822-94480322 ( 72) AAAAAAGAAGGCAAGA 1 chr7:149126363-149126863 ( 23) CAGGGAGAGAGTAGGG 1 chr1:226309393-226309893 ( 61) AGTGAGGGGACGGAGG 1 chr3:57555936-57556436 ( 7) CAGAATTATAGGGAAG 1 chr5:6378217-6378717 ( 55) GGCGATGGCGGAGAAG 1 chr21:39183013-39183513 ( 33) CGCGGAAGAGGTGAGG 1 chr19:43640011-43640511 ( 14) GAGGGTGGGGGCGCGG 1 chr1:113931658-113932158 ( 80) GATAACGGGAGGAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKGRDGRDGGDGAKG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50830 bayes= 9.74419 E= 2.8e-085 -4 -194 137 -1404 183 -1404 -48 -1404 -179 -207 85 73 28 -452 138 -1404 108 -1404 83 -266 78 -320 12 34 -79 -1404 147 -108 120 -452 72 -366 75 -172 -36 51 40 -1404 123 -192 -60 -294 142 -144 43 -162 31 25 -4 -1404 151 -1404 205 -552 -220 -1404 -192 -1404 106 71 -79 -1404 157 -208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKGRDGRDGGDGAKG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 168 E= 2.8e-085 0.220238 0.071429 0.708333 0.000000 0.803571 0.000000 0.196429 0.000000 0.065476 0.065476 0.494048 0.375000 0.273810 0.011905 0.714286 0.000000 0.476190 0.000000 0.488095 0.035714 0.386905 0.029762 0.297619 0.285714 0.130952 0.000000 0.761905 0.107143 0.517857 0.011905 0.452381 0.017857 0.380952 0.083333 0.214286 0.321429 0.297619 0.000000 0.642857 0.059524 0.148810 0.035714 0.732143 0.083333 0.303571 0.089286 0.339286 0.267857 0.220238 0.000000 0.779762 0.000000 0.934524 0.005952 0.059524 0.000000 0.059524 0.000000 0.571429 0.369048 0.130952 0.000000 0.815476 0.053571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKGRDGRDGGDGAKG MEME-2 regular expression -------------------------------------------------------------------------------- [GA]A[GT][GA][GA][AGT]G[AG][ATG][GA]G[GAT][GA]A[GT]G -------------------------------------------------------------------------------- Time 1569.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCATTCCATTCCATT MEME-3 width = 16 sites = 26 llr = 475 E-value = 3.4e-070 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCATTCCATTCCATT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::8::::9::::8:: pos.-specific C :89:::a8:::99:1: probability G ::1::::2:::::::: matrix T 92:2aa::1aa1129a bits 2.1 * * 1.9 *** ** * 1.7 * *** ** ** 1.5 * ***** *** * ** Relative 1.3 ******* ******** Entropy 1.1 **************** (26.3 bits) 0.9 **************** 0.6 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TCCATTCCATTCCATT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATTCCATTCCATT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chrUn_GL000216v2:364-864 + 26 1.47e-10 tcccgttgat tccattccattccatt tcactcctaa chr10:38527290-38527790 - 41 1.47e-10 TCCATTCGAG TCCATTCCATTCCATT CGAGACCATT chr20:31075502-31076002 - 2 1.47e-10 TCGTGTGAAG TCCATTCCATTCCATT C chr10:41887028-41887528 - 74 1.47e-10 TTGATACCAT TCCATTCCATTCCATT CCGTTTCTTT chr5:49660783-49661283 + 18 1.47e-10 tacattccac tccattccattccatt ccattccatt chr4:49149217-49149717 + 1 1.47e-10 . tccattccattccatt ccattccatt chr1:125181378-125181878 + 20 1.47e-10 ATGCGATGAT TCCATTCCATTCCATT TGGAGATGGT chr10:41884117-41884617 - 39 1.47e-10 TGGATTCCAA TCCATTCCATTCCATT CAATTCCATT chr5:49658408-49658908 + 48 1.47e-10 tccgtaccat tccattccattccatt ccattccatt chr20:31066741-31067241 - 77 1.47e-10 CATTCCAT TCCATTCCATTCCATT CCTTTCCTTT chr5:49666427-49666927 + 15 1.47e-10 tccattcctt tccattccattccatt cccttccatt chr4:49119944-49120444 + 75 2.94e-10 tccattccaa tccattccattccttt ccaatccatt chr10:42079437-42079937 - 49 7.10e-10 ATTCAATGAA TCCATTCGATTCCATT CAGTGATGAT chr1_KI270709v1_random:7 + 79 7.10e-10 TGATGATGAT TCCATTCGATTCCATT CAATGA chr1:143264415-143264915 - 71 7.10e-10 TGATGTTGAT TCCATTCGATTCCATT TGATGATGAT chr4:49107198-49107698 + 19 7.10e-10 tcgggttgaa tcctttccattccatt ccaatgcatt chr10:18557696-18558196 - 66 7.10e-10 CATTCTATTC TTCATTCCATTCCATT CAATTCTTGA chr22_KI270735v1_random: + 38 1.39e-09 tccattgcat tcgattccattccatt ccactccatt chr10:41882172-41882672 - 57 2.97e-09 TCCATTCTAA TCCATTCCATTCCATA CCGTTCCAGT chr1:125179936-125180436 + 80 5.41e-09 TGGTGTTGAT ACCATTCGATTCCATT CGATG chr6:34942708-34943208 + 70 5.06e-08 cttttccttt tcctttccttttcttt ctctccctct chr20:60142-60642 + 5 7.95e-08 gcac tccattccacttcact ccactccact chr10:89707272-89707772 + 27 1.00e-07 tttcctTTTT TTCTTTCCATTTTTTT Tttccttttc chr19:31204157-31204657 + 14 1.70e-07 ctcttcttct ttctttcccttccctt ccttccttgg chr17:41688761-41689261 - 62 3.44e-07 TAGCGGACAT ACGATACGATTCCTTT TCCTCGGTGG chr12:67592106-67592606 - 60 4.48e-07 CTCTCTTTCT TTCTTTCCTTTCTTCT TTCTTTCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATTCCATTCCATT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_GL000216v2:364-864 1.5e-10 25_[+3]_59 chr10:38527290-38527790 1.5e-10 40_[-3]_44 chr20:31075502-31076002 1.5e-10 1_[-3]_83 chr10:41887028-41887528 1.5e-10 73_[-3]_11 chr5:49660783-49661283 1.5e-10 17_[+3]_67 chr4:49149217-49149717 1.5e-10 [+3]_84 chr1:125181378-125181878 1.5e-10 19_[+3]_65 chr10:41884117-41884617 1.5e-10 38_[-3]_46 chr5:49658408-49658908 1.5e-10 47_[+3]_37 chr20:31066741-31067241 1.5e-10 76_[-3]_8 chr5:49666427-49666927 1.5e-10 14_[+3]_70 chr4:49119944-49120444 2.9e-10 74_[+3]_10 chr10:42079437-42079937 7.1e-10 48_[-3]_36 chr1_KI270709v1_random:7 7.1e-10 78_[+3]_6 chr1:143264415-143264915 7.1e-10 70_[-3]_14 chr4:49107198-49107698 7.1e-10 18_[+3]_66 chr10:18557696-18558196 7.1e-10 65_[-3]_19 chr22_KI270735v1_random: 1.4e-09 37_[+3]_47 chr10:41882172-41882672 3e-09 56_[-3]_28 chr1:125179936-125180436 5.4e-09 79_[+3]_5 chr6:34942708-34943208 5.1e-08 69_[+3]_15 chr20:60142-60642 7.9e-08 4_[+3]_80 chr10:89707272-89707772 1e-07 26_[+3]_58 chr19:31204157-31204657 1.7e-07 13_[+3]_71 chr17:41688761-41689261 3.4e-07 61_[-3]_23 chr12:67592106-67592606 4.5e-07 59_[-3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATTCCATTCCATT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCATTCCATTCCATT width=16 seqs=26 chrUn_GL000216v2:364-864 ( 26) TCCATTCCATTCCATT 1 chr10:38527290-38527790 ( 41) TCCATTCCATTCCATT 1 chr20:31075502-31076002 ( 2) TCCATTCCATTCCATT 1 chr10:41887028-41887528 ( 74) TCCATTCCATTCCATT 1 chr5:49660783-49661283 ( 18) TCCATTCCATTCCATT 1 chr4:49149217-49149717 ( 1) TCCATTCCATTCCATT 1 chr1:125181378-125181878 ( 20) TCCATTCCATTCCATT 1 chr10:41884117-41884617 ( 39) TCCATTCCATTCCATT 1 chr5:49658408-49658908 ( 48) TCCATTCCATTCCATT 1 chr20:31066741-31067241 ( 77) TCCATTCCATTCCATT 1 chr5:49666427-49666927 ( 15) TCCATTCCATTCCATT 1 chr4:49119944-49120444 ( 75) TCCATTCCATTCCTTT 1 chr10:42079437-42079937 ( 49) TCCATTCGATTCCATT 1 chr1_KI270709v1_random:7 ( 79) TCCATTCGATTCCATT 1 chr1:143264415-143264915 ( 71) TCCATTCGATTCCATT 1 chr4:49107198-49107698 ( 19) TCCTTTCCATTCCATT 1 chr10:18557696-18558196 ( 66) TTCATTCCATTCCATT 1 chr22_KI270735v1_random: ( 38) TCGATTCCATTCCATT 1 chr10:41882172-41882672 ( 57) TCCATTCCATTCCATA 1 chr1:125179936-125180436 ( 80) ACCATTCGATTCCATT 1 chr6:34942708-34943208 ( 70) TCCTTTCCTTTTCTTT 1 chr20:60142-60642 ( 5) TCCATTCCACTTCACT 1 chr10:89707272-89707772 ( 27) TTCTTTCCATTTTTTT 1 chr19:31204157-31204657 ( 14) TTCTTTCCCTTCCCTT 1 chr17:41688761-41689261 ( 62) ACGATACGATTCCTTT 1 chr12:67592106-67592606 ( 60) TTCTTTCCTTTCTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATTCCATTCCATT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50830 bayes= 11.463 E= 3.4e-070 -155 -1134 -1134 203 -1134 163 -1134 -55 -1134 175 -183 -1134 184 -1134 -1134 -23 -1134 -1134 -1134 215 -255 -1134 -1134 209 -1134 187 -1134 -1134 -1134 156 -51 -1134 197 -283 -1134 -155 -1134 -283 -1134 209 -1134 -1134 -1134 215 -1134 169 -1134 -97 -1134 175 -1134 -155 177 -283 -1134 -23 -1134 -183 -1134 203 -255 -1134 -1134 209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATTCCATTCCATT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 26 E= 3.4e-070 0.076923 0.000000 0.000000 0.923077 0.000000 0.846154 0.000000 0.153846 0.000000 0.923077 0.076923 0.000000 0.807692 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 1.000000 0.038462 0.000000 0.000000 0.961538 0.000000 1.000000 0.000000 0.000000 0.000000 0.807692 0.192308 0.000000 0.884615 0.038462 0.000000 0.076923 0.000000 0.038462 0.000000 0.961538 0.000000 0.000000 0.000000 1.000000 0.000000 0.884615 0.000000 0.115385 0.000000 0.923077 0.000000 0.076923 0.769231 0.038462 0.000000 0.192308 0.000000 0.076923 0.000000 0.923077 0.038462 0.000000 0.000000 0.961538 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATTCCATTCCATT MEME-3 regular expression -------------------------------------------------------------------------------- TCCATTCCATTCCATT -------------------------------------------------------------------------------- Time 2232.20 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACACACRCACAC MEME-4 width = 16 sites = 62 llr = 788 E-value = 7.9e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACACACRCACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8:8:8:8:8:519:9: pos.-specific C 18:9:8:7:7:9:8:9 probability G :1::11121:3:1::: matrix T ::1111:1132::2:1 bits 2.1 1.9 1.7 * 1.5 * * ** Relative 1.3 * * * ***** Entropy 1.1 ***** * * ***** (18.3 bits) 0.9 ********** ***** 0.6 ********** ***** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel ACACACACACACACAC consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACRCACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr20:52972214-52972714 - 48 8.73e-10 GCTTCCTCGC ACACACACACTCACAC CCCCCACATA chr7:140639928-140640428 + 53 8.73e-10 gcgcgcggac acacacacactcacac TCGCGCCCCG chr17:77718466-77718966 - 83 1.27e-09 GC ACACACAGACACACAC GCATGCGTGC chr21:33895308-33895808 - 9 1.48e-09 ACACGTAGAC ACACACACATGCACAC ACAAACAC chr13:101271859-10127235 - 34 1.48e-09 AGTGACACAG ACACACACATGCACAC TCGTGCACAT chr16:89023064-89023564 + 2 3.19e-09 t acacacactcacacac gctcacaggc chr6:169863636-169864136 + 13 8.18e-09 aaacacatgc actcacacactcacac tcaccacaca chr1:236101273-236101773 - 65 8.18e-09 CCTACATAAC ACACAAACACACACAC CACACACTCA chr16:57628748-57629248 - 10 1.45e-08 TCACTCTCAC ACACTCACACTCACAC ACTCTCACA chr3:134795166-134795666 + 8 1.45e-08 ctctctc acacacgcacgcacac acccacctct chr9:36842792-36843292 - 70 1.45e-08 ACACACAGGC ACACACACGCTCACAC ACTGATACAC chr21:45437844-45438344 + 10 1.45e-08 CTCCTGCAC ACACTCACACTCACAC TCAGACAAGC chr19:31095249-31095749 + 72 1.74e-08 atacaaagat acacacatacacatac tcacataaaa chr19:35947357-35947857 - 69 3.11e-08 CAAGAGACTT CGACACACACACACAC ACACACACAC chr21:45591163-45591663 + 48 3.62e-08 cataagacac acacacagatacatac cactccgcat chrX:140724055-140724555 + 17 3.62e-08 cacattctgt acacacagacacacat tccatacaca chr19:51628401-51628901 - 14 3.62e-08 ATGCAGATAC ACCCACACACGCACAC ATGTACGTAC chr19:33778459-33778959 + 25 3.62e-08 agatatgcag acacacgcatgcacac agacccagat chr10:6407303-6407803 - 30 5.05e-08 CACATGCCAT ACACACACATGAACAC ACCATACACA chr16:50693010-50693510 - 20 5.05e-08 TTCCCAGCAC ACACGCGCACACACAC ACACCACACA chr12:132950612-13295111 + 76 5.05e-08 catcacacat actcacagacgcacac acatactga chr22:27631854-27632354 - 28 6.45e-08 ACATATGCAT ACTCACATATACACAC ACAATCACAT chr19:53560080-53560580 + 73 6.45e-08 atatatatac agacacatatacacac ccacagatag chr8:40820308-40820808 - 74 9.32e-08 ATGCACTCCC ACATACAGATACACAC ATAAACACCA chr19:33505491-33505991 + 81 1.06e-07 cacattattt actcacacacccacac accc chr12:114904524-11490502 - 69 1.35e-07 ACACTTTCTC ACACACACTAACACAC ATGCTCTCAC chr19:39906177-39906677 + 3 1.68e-07 CG AGACACACTCACATAC AAGTGGTCCC chr18:79797257-79797757 - 80 1.87e-07 TAATC ACACACAGGTGCACAC TCACATACTC chr21:41585169-41585669 + 17 2.06e-07 catgcacacc ccacatacacacatac catacacaca chr1:27086447-27086947 + 4 2.06e-07 ata ccacacacacagacac cacacacacc chr12:50056946-50057446 - 17 3.11e-07 GCCCATATGG AGACAGACACACATAC CGACCAGAGT chr21:45332367-45332867 - 54 3.86e-07 AAGCACACAG ACACAGACACAGACAC ACAGATGCAC chr3:194352499-194352999 - 71 3.86e-07 CACACACTGC ACACACACACCCACTC ACCACACACA chr10:122724579-12272507 + 8 5.13e-07 acaccat tcactcacactcacac ccaccactca chr10:79025734-79026234 + 1 5.13e-07 . ACTCTCACACACGCAC CACAGTACAA chrX:120309467-120309967 - 79 5.64e-07 CACACC ACGCGCACACACATAC AGAGGGAGAG chr21:34843185-34843685 + 10 8.40e-07 cagggacac acatgcatatacacac aggcagatat chr13:110874160-11087466 + 11 8.40e-07 tcccacactg acacgctctcacacac tcccagtcct chr1:203526806-203527306 + 75 9.25e-07 agacacactc acataaactcacacac caaactcccc chr12:57111965-57112465 + 2 1.12e-06 c acacacacacacGTGC AGGCAGGCTC chr7:155918673-155919173 - 13 1.23e-06 CATGCAAAAT GCACACACAAACACAC CACACACAGA chr5:10548551-10549051 - 51 1.23e-06 ACACATGCCG ACACACATGCTAACAC ATGCCGACAT chr22:43737287-43737787 + 26 1.23e-06 atattcacag atacatgcacacacac catcactcac chr19:47228641-47229141 + 44 1.35e-06 CACAGCACAC ACACAAGGACTCACAC GGGACTGGCC chr21:41954951-41955451 - 1 1.47e-06 CACCCATGTG CCACACACACACGCTC chr5:110224-110724 + 84 1.47e-06 GGCCACTCTG CAACACACATGCACAC A chr10:101830377-10183087 + 26 1.61e-06 CGCTGGCTTC AGCCGCACACGCACAC AGTAGCCACG chr21:31410213-31410713 - 42 1.61e-06 ACAGTCGCTC ACACATGCTCACATAC GTAACACCCT chr1:205973096-205973596 + 73 2.30e-06 acacatcaca ccatgcatacacacac ccctcacact chr12:27710694-27711194 - 60 3.51e-06 AGAGAAGACG AGACAGACACTCACGC AGGCTAGGTG chr19:30426787-30427287 + 71 4.13e-06 AAGAAAAGTA AGACACAGATGCATAT ccactaactt chr10:28678350-28678850 - 77 6.72e-06 TCACACAG AGACTCAGATGCACAT TCAGAGATAC chr1:227050022-227050522 - 83 7.86e-06 CA CCTCACAGTCACACAT TAACTTTTGC chr6:36678645-36679145 - 51 8.49e-06 TGAACGCAGC ACACACCCGCGAACAC GCATCCTCGC chr16:88443040-88443540 + 59 9.90e-06 GACCTGCAAA CCACCCACGTGCACAC CCGGCACCTC chr5:1044095-1044595 - 66 9.90e-06 TAACCCACCC ACTCATTCATTCATAC ACTAACCCAC chr5:174799843-174800343 + 20 9.90e-06 caccacatat atacatgtatacacac aacatatgta chr1:62266235-62266735 + 53 1.24e-05 TTCACACCAC TGCCTCACACACACAC CACTCACACC chr9:136581415-136581915 + 50 2.36e-05 tcactcgctt actcactcactcgctc acttactcat chr16:31179993-31180493 - 4 5.22e-05 GAGGCCATGT CCGCGCACGCGCGCAC AGG chr19:44111285-44111785 + 5 7.11e-05 aaat acgtatacacgaacat ttgtagcaac chr18:46967228-46967728 - 77 8.52e-05 GAGCACGC ACACGGACGCGCGCGC GCACACACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACRCACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52972214-52972714 8.7e-10 47_[-4]_37 chr7:140639928-140640428 8.7e-10 52_[+4]_32 chr17:77718466-77718966 1.3e-09 82_[-4]_2 chr21:33895308-33895808 1.5e-09 8_[-4]_76 chr13:101271859-10127235 1.5e-09 33_[-4]_51 chr16:89023064-89023564 3.2e-09 1_[+4]_83 chr6:169863636-169864136 8.2e-09 12_[+4]_72 chr1:236101273-236101773 8.2e-09 64_[-4]_20 chr16:57628748-57629248 1.5e-08 9_[-4]_75 chr3:134795166-134795666 1.5e-08 7_[+4]_77 chr9:36842792-36843292 1.5e-08 69_[-4]_15 chr21:45437844-45438344 1.5e-08 9_[+4]_75 chr19:31095249-31095749 1.7e-08 71_[+4]_13 chr19:35947357-35947857 3.1e-08 68_[-4]_16 chr21:45591163-45591663 3.6e-08 47_[+4]_37 chrX:140724055-140724555 3.6e-08 16_[+4]_68 chr19:51628401-51628901 3.6e-08 13_[-4]_71 chr19:33778459-33778959 3.6e-08 24_[+4]_60 chr10:6407303-6407803 5e-08 29_[-4]_55 chr16:50693010-50693510 5e-08 19_[-4]_65 chr12:132950612-13295111 5e-08 75_[+4]_9 chr22:27631854-27632354 6.4e-08 27_[-4]_57 chr19:53560080-53560580 6.4e-08 72_[+4]_12 chr8:40820308-40820808 9.3e-08 73_[-4]_11 chr19:33505491-33505991 1.1e-07 80_[+4]_4 chr12:114904524-11490502 1.3e-07 68_[-4]_16 chr19:39906177-39906677 1.7e-07 2_[+4]_82 chr18:79797257-79797757 1.9e-07 79_[-4]_5 chr21:41585169-41585669 2.1e-07 16_[+4]_68 chr1:27086447-27086947 2.1e-07 3_[+4]_81 chr12:50056946-50057446 3.1e-07 16_[-4]_68 chr21:45332367-45332867 3.9e-07 53_[-4]_31 chr3:194352499-194352999 3.9e-07 70_[-4]_14 chr10:122724579-12272507 5.1e-07 7_[+4]_77 chr10:79025734-79026234 5.1e-07 [+4]_84 chrX:120309467-120309967 5.6e-07 78_[-4]_6 chr21:34843185-34843685 8.4e-07 9_[+4]_75 chr13:110874160-11087466 8.4e-07 10_[+4]_74 chr1:203526806-203527306 9.2e-07 74_[+4]_10 chr12:57111965-57112465 1.1e-06 1_[+4]_83 chr7:155918673-155919173 1.2e-06 12_[-4]_72 chr5:10548551-10549051 1.2e-06 50_[-4]_34 chr22:43737287-43737787 1.2e-06 25_[+4]_59 chr19:47228641-47229141 1.3e-06 43_[+4]_41 chr21:41954951-41955451 1.5e-06 [-4]_84 chr5:110224-110724 1.5e-06 83_[+4]_1 chr10:101830377-10183087 1.6e-06 25_[+4]_59 chr21:31410213-31410713 1.6e-06 41_[-4]_43 chr1:205973096-205973596 2.3e-06 72_[+4]_12 chr12:27710694-27711194 3.5e-06 59_[-4]_25 chr19:30426787-30427287 4.1e-06 70_[+4]_14 chr10:28678350-28678850 6.7e-06 76_[-4]_8 chr1:227050022-227050522 7.9e-06 82_[-4]_2 chr6:36678645-36679145 8.5e-06 50_[-4]_34 chr16:88443040-88443540 9.9e-06 58_[+4]_26 chr5:1044095-1044595 9.9e-06 65_[-4]_19 chr5:174799843-174800343 9.9e-06 19_[+4]_65 chr1:62266235-62266735 1.2e-05 52_[+4]_32 chr9:136581415-136581915 2.4e-05 49_[+4]_35 chr16:31179993-31180493 5.2e-05 3_[-4]_81 chr19:44111285-44111785 7.1e-05 4_[+4]_80 chr18:46967228-46967728 8.5e-05 76_[-4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACRCACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACACACRCACAC width=16 seqs=62 chr20:52972214-52972714 ( 48) ACACACACACTCACAC 1 chr7:140639928-140640428 ( 53) ACACACACACTCACAC 1 chr17:77718466-77718966 ( 83) ACACACAGACACACAC 1 chr21:33895308-33895808 ( 9) ACACACACATGCACAC 1 chr13:101271859-10127235 ( 34) ACACACACATGCACAC 1 chr16:89023064-89023564 ( 2) ACACACACTCACACAC 1 chr6:169863636-169864136 ( 13) ACTCACACACTCACAC 1 chr1:236101273-236101773 ( 65) ACACAAACACACACAC 1 chr16:57628748-57629248 ( 10) ACACTCACACTCACAC 1 chr3:134795166-134795666 ( 8) ACACACGCACGCACAC 1 chr9:36842792-36843292 ( 70) ACACACACGCTCACAC 1 chr21:45437844-45438344 ( 10) ACACTCACACTCACAC 1 chr19:31095249-31095749 ( 72) ACACACATACACATAC 1 chr19:35947357-35947857 ( 69) CGACACACACACACAC 1 chr21:45591163-45591663 ( 48) ACACACAGATACATAC 1 chrX:140724055-140724555 ( 17) ACACACAGACACACAT 1 chr19:51628401-51628901 ( 14) ACCCACACACGCACAC 1 chr19:33778459-33778959 ( 25) ACACACGCATGCACAC 1 chr10:6407303-6407803 ( 30) ACACACACATGAACAC 1 chr16:50693010-50693510 ( 20) ACACGCGCACACACAC 1 chr12:132950612-13295111 ( 76) ACTCACAGACGCACAC 1 chr22:27631854-27632354 ( 28) ACTCACATATACACAC 1 chr19:53560080-53560580 ( 73) AGACACATATACACAC 1 chr8:40820308-40820808 ( 74) ACATACAGATACACAC 1 chr19:33505491-33505991 ( 81) ACTCACACACCCACAC 1 chr12:114904524-11490502 ( 69) ACACACACTAACACAC 1 chr19:39906177-39906677 ( 3) AGACACACTCACATAC 1 chr18:79797257-79797757 ( 80) ACACACAGGTGCACAC 1 chr21:41585169-41585669 ( 17) CCACATACACACATAC 1 chr1:27086447-27086947 ( 4) CCACACACACAGACAC 1 chr12:50056946-50057446 ( 17) AGACAGACACACATAC 1 chr21:45332367-45332867 ( 54) ACACAGACACAGACAC 1 chr3:194352499-194352999 ( 71) ACACACACACCCACTC 1 chr10:122724579-12272507 ( 8) TCACTCACACTCACAC 1 chr10:79025734-79026234 ( 1) ACTCTCACACACGCAC 1 chrX:120309467-120309967 ( 79) ACGCGCACACACATAC 1 chr21:34843185-34843685 ( 10) ACATGCATATACACAC 1 chr13:110874160-11087466 ( 11) ACACGCTCTCACACAC 1 chr1:203526806-203527306 ( 75) ACATAAACTCACACAC 1 chr12:57111965-57112465 ( 2) ACACACACACACGTGC 1 chr7:155918673-155919173 ( 13) GCACACACAAACACAC 1 chr5:10548551-10549051 ( 51) ACACACATGCTAACAC 1 chr22:43737287-43737787 ( 26) ATACATGCACACACAC 1 chr19:47228641-47229141 ( 44) ACACAAGGACTCACAC 1 chr21:41954951-41955451 ( 1) CCACACACACACGCTC 1 chr5:110224-110724 ( 84) CAACACACATGCACAC 1 chr10:101830377-10183087 ( 26) AGCCGCACACGCACAC 1 chr21:31410213-31410713 ( 42) ACACATGCTCACATAC 1 chr1:205973096-205973596 ( 73) CCATGCATACACACAC 1 chr12:27710694-27711194 ( 60) AGACAGACACTCACGC 1 chr19:30426787-30427287 ( 71) AGACACAGATGCATAT 1 chr10:28678350-28678850 ( 77) AGACTCAGATGCACAT 1 chr1:227050022-227050522 ( 83) CCTCACAGTCACACAT 1 chr6:36678645-36679145 ( 51) ACACACCCGCGAACAC 1 chr16:88443040-88443540 ( 59) CCACCCACGTGCACAC 1 chr5:1044095-1044595 ( 66) ACTCATTCATTCATAC 1 chr5:174799843-174800343 ( 20) ATACATGTATACACAC 1 chr1:62266235-62266735 ( 53) TGCCTCACACACACAC 1 chr9:136581415-136581915 ( 50) ACTCACTCACTCGCTC 1 chr16:31179993-31180493 ( 4) CCGCGCACGCGCGCAC 1 chr19:44111285-44111785 ( 5) ACGTATACACGAACAT 1 chr18:46967228-46967728 ( 77) ACACGGACGCGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACRCACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50830 bayes= 10.3844 E= 7.9e-076 184 -92 -408 -281 -380 156 -92 -281 178 -250 -250 -81 -1260 175 -1260 -149 175 -408 -109 -122 -222 153 -209 -122 186 -408 -128 -222 -1260 140 -76 -100 178 -1260 -128 -100 -281 137 -1260 19 115 -309 0 -22 -181 172 -309 -1260 200 -1260 -150 -1260 -1260 161 -1260 -49 200 -1260 -250 -222 -1260 175 -1260 -149 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACRCACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 62 E= 7.9e-076 0.806452 0.145161 0.016129 0.032258 0.016129 0.806452 0.145161 0.032258 0.774194 0.048387 0.048387 0.129032 0.000000 0.919355 0.000000 0.080645 0.758065 0.016129 0.129032 0.096774 0.048387 0.790323 0.064516 0.096774 0.822581 0.016129 0.112903 0.048387 0.000000 0.725806 0.161290 0.112903 0.774194 0.000000 0.112903 0.112903 0.032258 0.709677 0.000000 0.258065 0.500000 0.032258 0.274194 0.193548 0.064516 0.903226 0.032258 0.000000 0.903226 0.000000 0.096774 0.000000 0.000000 0.838710 0.000000 0.161290 0.903226 0.000000 0.048387 0.048387 0.000000 0.919355 0.000000 0.080645 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACRCACAC MEME-4 regular expression -------------------------------------------------------------------------------- ACACACACA[CT][AG]CACAC -------------------------------------------------------------------------------- Time 2859.26 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTCCATTCCATTCCA MEME-5 width = 16 sites = 20 llr = 371 E-value = 4.7e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTCCATTCCATTCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:::19:::29::11a pos.-specific C :1:9911:a71::aa: probability G :::1:::1:1:::::: matrix T :aa111a9:11aa::1 bits 2.1 * * ** 1.9 *** * * ** * 1.7 *** *** ** * 1.5 *** *** ***** Relative 1.3 *** ***** ****** Entropy 1.1 ********* ****** (26.7 bits) 0.9 ********* ****** 0.6 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel ATTCCATTCCATTCCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCCATTCCATTCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chrUn_GL000216v2:364-864 + 58 1.47e-10 ctaaatgttg attccattccattcca ttccattcca chr20:31075502-31076002 - 64 1.47e-10 ATTAATTTCC ATTCCATTCCATTCCA CTCGGGTTGG chr10:41887028-41887528 - 1 1.47e-10 ATTCCGTCCC ATTCCATTCCATTCCA chr5:49660783-49661283 + 56 1.47e-10 tttctggtag attccattccattcca ttccattcca chr4:49149217-49149717 + 54 1.47e-10 actcgggttg attccattccattcca ttccattcca chr10:41884117-41884617 - 76 1.47e-10 TTCCATTCC ATTCCATTCCATTCCA TTTAACATGG chr20:31066741-31067241 - 19 1.47e-10 ATTGCATTGC ATTCCATTCCATTCCA TCCCATCCCA chr22_KI270735v1_random: + 66 1.47e-10 actccattgc attccattccattcca ctccactcca chr4:49119944-49120444 + 3 1.47e-10 cc attccattccattcca ctccattcca chr5:49658408-49658908 + 71 9.19e-10 attccattcc attccatgccattcca ctcgggttga chr4:49107198-49107698 + 77 1.04e-09 gattcaatca attccattctattcca ttccgttc chr10:38527290-38527790 - 63 2.27e-09 ATTCTATTAA ATTCCATTCCCTTCCA TTCGAGTCCA chr10:42079437-42079937 - 25 2.87e-09 TTCAGTGATG ATTCCATTCATTTCCA TCTGATGATG chr1_KI270709v1_random:7 + 51 2.87e-09 TTCTATGATG ATTCCATTCATTTCCA TCTGATGATG chr1:143264415-143264915 - 47 3.16e-09 TTTGATGATG ATTCCATGCAATTCCA TTAGATGATG chr5:49666427-49666927 + 79 4.85e-09 actcgattac attgccttccattcca ctcgga chr1:125179936-125180436 + 29 5.29e-08 CCGTTCGAAG ATTCTCTTCGATTCCA TTCGATAATT chr10:41882172-41882672 - 29 8.20e-08 GTTCCAGTCC ATTTATTTCCATTCCA CTCAGGTTGA chr1:125181378-125181878 + 67 1.15e-07 CCATTCGTTG ATTGCATTCAATTCAT TCGATGACGA chr20:60142-60642 + 48 1.19e-07 actgcatagc actccactccattaca ttccactcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCCATTCCATTCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_GL000216v2:364-864 1.5e-10 57_[+5]_27 chr20:31075502-31076002 1.5e-10 63_[-5]_21 chr10:41887028-41887528 1.5e-10 [-5]_84 chr5:49660783-49661283 1.5e-10 55_[+5]_29 chr4:49149217-49149717 1.5e-10 53_[+5]_31 chr10:41884117-41884617 1.5e-10 75_[-5]_9 chr20:31066741-31067241 1.5e-10 18_[-5]_66 chr22_KI270735v1_random: 1.5e-10 65_[+5]_19 chr4:49119944-49120444 1.5e-10 2_[+5]_82 chr5:49658408-49658908 9.2e-10 70_[+5]_14 chr4:49107198-49107698 1e-09 76_[+5]_8 chr10:38527290-38527790 2.3e-09 62_[-5]_22 chr10:42079437-42079937 2.9e-09 24_[-5]_60 chr1_KI270709v1_random:7 2.9e-09 50_[+5]_34 chr1:143264415-143264915 3.2e-09 46_[-5]_38 chr5:49666427-49666927 4.8e-09 78_[+5]_6 chr1:125179936-125180436 5.3e-08 28_[+5]_56 chr10:41882172-41882672 8.2e-08 28_[-5]_56 chr1:125181378-125181878 1.2e-07 66_[+5]_18 chr20:60142-60642 1.2e-07 47_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCCATTCCATTCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTCCATTCCATTCCA width=16 seqs=20 chrUn_GL000216v2:364-864 ( 58) ATTCCATTCCATTCCA 1 chr20:31075502-31076002 ( 64) ATTCCATTCCATTCCA 1 chr10:41887028-41887528 ( 1) ATTCCATTCCATTCCA 1 chr5:49660783-49661283 ( 56) ATTCCATTCCATTCCA 1 chr4:49149217-49149717 ( 54) ATTCCATTCCATTCCA 1 chr10:41884117-41884617 ( 76) ATTCCATTCCATTCCA 1 chr20:31066741-31067241 ( 19) ATTCCATTCCATTCCA 1 chr22_KI270735v1_random: ( 66) ATTCCATTCCATTCCA 1 chr4:49119944-49120444 ( 3) ATTCCATTCCATTCCA 1 chr5:49658408-49658908 ( 71) ATTCCATGCCATTCCA 1 chr4:49107198-49107698 ( 77) ATTCCATTCTATTCCA 1 chr10:38527290-38527790 ( 63) ATTCCATTCCCTTCCA 1 chr10:42079437-42079937 ( 25) ATTCCATTCATTTCCA 1 chr1_KI270709v1_random:7 ( 51) ATTCCATTCATTTCCA 1 chr1:143264415-143264915 ( 47) ATTCCATGCAATTCCA 1 chr5:49666427-49666927 ( 79) ATTGCCTTCCATTCCA 1 chr1:125179936-125180436 ( 29) ATTCTCTTCGATTCCA 1 chr10:41882172-41882672 ( 29) ATTTATTTCCATTCCA 1 chr1:125181378-125181878 ( 67) ATTGCATTCAATTCAT 1 chr20:60142-60642 ( 48) ACTCCACTCCATTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCCATTCCATTCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50830 bayes= 12.2546 E= 4.7e-047 215 -1097 -1097 -1097 -1097 -245 -1097 207 -1097 -1097 -1097 215 -1097 163 -145 -217 -217 171 -1097 -217 191 -145 -1097 -217 -1097 -245 -1097 207 -1097 -1097 -145 199 -1097 187 -1097 -1097 -18 135 -245 -217 191 -245 -1097 -117 -1097 -1097 -1097 215 -1097 -1097 -1097 215 -217 179 -1097 -1097 -217 179 -1097 -1097 207 -1097 -1097 -217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCCATTCCATTCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 20 E= 4.7e-047 1.000000 0.000000 0.000000 0.000000 0.000000 0.050000 0.000000 0.950000 0.000000 0.000000 0.000000 1.000000 0.000000 0.850000 0.100000 0.050000 0.050000 0.900000 0.000000 0.050000 0.850000 0.100000 0.000000 0.050000 0.000000 0.050000 0.000000 0.950000 0.000000 0.000000 0.100000 0.900000 0.000000 1.000000 0.000000 0.000000 0.200000 0.700000 0.050000 0.050000 0.850000 0.050000 0.000000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.050000 0.950000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.950000 0.000000 0.000000 0.050000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCCATTCCATTCCA MEME-5 regular expression -------------------------------------------------------------------------------- ATTCCATTC[CA]ATTCCA -------------------------------------------------------------------------------- Time 3464.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCCWTTCCATT MEME-6 width = 12 sites = 35 llr = 421 E-value = 1.4e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCWTTCCATT MEME-6 Description -------------------------------------------------------------------------------- Simplified A :::15::::7:: pos.-specific C ::8911:782:: probability G :::::1::1::: matrix T aa2:48a321aa bits 2.1 * * 1.9 ** * ** 1.7 ** * ** 1.5 ** * ** Relative 1.3 ** * ** ** Entropy 1.1 **** ** ** (17.4 bits) 0.9 ************ 0.6 ************ 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel TTCCATTCCATT consensus T T T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCWTTCCATT MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chrUn_GL000216v2:364-864 + 74 3.84e-08 ttccattcca ttccattccatt gcattccact chr10:38527290-38527790 - 21 3.84e-08 TTCGAGACCA TTCCATTCCATT CCCTTTGATT chr20:31075502-31076002 - 87 3.84e-08 CA TTCCATTCCATT AATTTCCATT chr10:41887028-41887528 - 24 3.84e-08 TTCCATGCCA TTCCATTCCATT CCGTCCCATT chr5:49660783-49661283 + 72 3.84e-08 ttccattcca ttccattccatt ccattccatt chr4:49149217-49149717 + 20 3.84e-08 ttccattcca ttccattccatt ccattccatt chr5:49658408-49658908 + 22 3.84e-08 ttgaatttcg ttccattccatt ctattccgta chr4:49119944-49120444 + 59 7.67e-08 gttgaatcca ttcctttccatt ccaatccatt chr10:41884117-41884617 - 24 2.50e-07 TTCCATTCAA TTCCATTCCCTT CCATTCGGGT chr6:24720318-24720818 - 54 3.60e-07 AGCGCAGGGC TTCCTTTCCCTT CCCCCTCCGC chr4:49107198-49107698 + 43 6.05e-07 ttccaatgca ttcccttccatt caattccact chr10:18557696-18558196 - 25 6.05e-07 ATTCTCCATT TTCCCTTCCATT CCACACCATT chr1:143264415-143264915 - 19 6.37e-07 GATGACTCCT TTCATTTCCATT CGATGATGAT chr6:34942708-34943208 + 51 7.27e-07 cctttcccct ttccttttcctt ttccttttcc chr22_KI270735v1_random: + 22 9.55e-07 ttccatgcca ttccactccatt gcattcgatt chr10:42079437-42079937 - 2 1.02e-06 CTGATGATGA TTCCATTCGATT C chrX:75496715-75497215 - 89 1.02e-06 . TTCAATTTCATT TAGTTCTGCT chr10:89707272-89707772 + 44 1.28e-06 CATTTTTTTT ttccttttcttt cccctcctct chr19:35077070-35077570 - 30 1.28e-06 CCCTCCTGTC TTCCTGTCCATT GGCCAGCTGG chr19:44125575-44126075 + 41 1.53e-06 cttctacttg ttcaattctatt gctgagactt chr20:31066741-31067241 - 37 1.70e-06 CTCGGGTTGA TTCCATTGCATT GCATTCCATT chr5:159098694-159099194 - 14 2.32e-06 TCTTCCTTCC TTCCTTTTTCTT TCTTTTTTCT chr5:49666427-49666927 + 34 2.94e-06 ttccattccc ttccattccact cgtgttgata chr12:67592106-67592606 - 86 3.30e-06 CTT TTTCTTTTCTTT CTCTCTTTCT chrX:119456941-119457441 - 61 3.30e-06 CTTTCTCTCC TTTCTTTCTCTT CTTTCTTTCT chr1:201641718-201642218 + 18 3.30e-06 ccctccctcc tttctttctctt tttcttccct chr1:200505321-200505821 - 88 3.30e-06 C TTTCTTTTCTTT CTCACTCTCT chr16:14463264-14463764 - 18 4.66e-06 TCCACATCAC TTTCAGTTCATT GATTACTGTT chrUn_KI270587v1:1675-21 - 30 6.26e-06 GAGTTTAACT TTTCTTTTGATT GAGAACTTTT chr6:143450536-143451036 - 17 6.26e-06 AGCTCCCGAG TGCCTTTTCATT AGACTACCCC chr6:36594243-36594743 - 72 6.70e-06 CTTGGTACTG TTAAATTCCATT TCCACCTCAT chr1_KI270709v1_random:7 + 36 7.36e-06 ATCCATGCGA TTCCATTCTATG ATGATTCCAT chr19:29688207-29688707 + 10 7.36e-06 acatatgtt ttccactctctt gggtatatgc chr6:44247010-44247510 + 50 1.10e-05 TTTTTGTTTT TTTCTGTCCTTT AGGGAGCCTT chr13:52194258-52194758 + 16 1.22e-05 GTCTGGCTTG TTCCCCTCCCTT TGCTTTCCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCWTTCCATT MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_GL000216v2:364-864 3.8e-08 73_[+6]_15 chr10:38527290-38527790 3.8e-08 20_[-6]_68 chr20:31075502-31076002 3.8e-08 86_[-6]_2 chr10:41887028-41887528 3.8e-08 23_[-6]_65 chr5:49660783-49661283 3.8e-08 71_[+6]_17 chr4:49149217-49149717 3.8e-08 19_[+6]_69 chr5:49658408-49658908 3.8e-08 21_[+6]_67 chr4:49119944-49120444 7.7e-08 58_[+6]_30 chr10:41884117-41884617 2.5e-07 23_[-6]_65 chr6:24720318-24720818 3.6e-07 53_[-6]_35 chr4:49107198-49107698 6e-07 42_[+6]_46 chr10:18557696-18558196 6e-07 24_[-6]_64 chr1:143264415-143264915 6.4e-07 18_[-6]_70 chr6:34942708-34943208 7.3e-07 50_[+6]_38 chr22_KI270735v1_random: 9.5e-07 21_[+6]_67 chr10:42079437-42079937 1e-06 1_[-6]_87 chrX:75496715-75497215 1e-06 88_[-6] chr10:89707272-89707772 1.3e-06 43_[+6]_45 chr19:35077070-35077570 1.3e-06 29_[-6]_59 chr19:44125575-44126075 1.5e-06 40_[+6]_48 chr20:31066741-31067241 1.7e-06 36_[-6]_52 chr5:159098694-159099194 2.3e-06 13_[-6]_75 chr5:49666427-49666927 2.9e-06 33_[+6]_55 chr12:67592106-67592606 3.3e-06 85_[-6]_3 chrX:119456941-119457441 3.3e-06 60_[-6]_28 chr1:201641718-201642218 3.3e-06 17_[+6]_71 chr1:200505321-200505821 3.3e-06 87_[-6]_1 chr16:14463264-14463764 4.7e-06 17_[-6]_71 chrUn_KI270587v1:1675-21 6.3e-06 29_[-6]_59 chr6:143450536-143451036 6.3e-06 16_[-6]_72 chr6:36594243-36594743 6.7e-06 71_[-6]_17 chr1_KI270709v1_random:7 7.4e-06 35_[+6]_53 chr19:29688207-29688707 7.4e-06 9_[+6]_79 chr6:44247010-44247510 1.1e-05 49_[+6]_39 chr13:52194258-52194758 1.2e-05 15_[+6]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCWTTCCATT MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCWTTCCATT width=12 seqs=35 chrUn_GL000216v2:364-864 ( 74) TTCCATTCCATT 1 chr10:38527290-38527790 ( 21) TTCCATTCCATT 1 chr20:31075502-31076002 ( 87) TTCCATTCCATT 1 chr10:41887028-41887528 ( 24) TTCCATTCCATT 1 chr5:49660783-49661283 ( 72) TTCCATTCCATT 1 chr4:49149217-49149717 ( 20) TTCCATTCCATT 1 chr5:49658408-49658908 ( 22) TTCCATTCCATT 1 chr4:49119944-49120444 ( 59) TTCCTTTCCATT 1 chr10:41884117-41884617 ( 24) TTCCATTCCCTT 1 chr6:24720318-24720818 ( 54) TTCCTTTCCCTT 1 chr4:49107198-49107698 ( 43) TTCCCTTCCATT 1 chr10:18557696-18558196 ( 25) TTCCCTTCCATT 1 chr1:143264415-143264915 ( 19) TTCATTTCCATT 1 chr6:34942708-34943208 ( 51) TTCCTTTTCCTT 1 chr22_KI270735v1_random: ( 22) TTCCACTCCATT 1 chr10:42079437-42079937 ( 2) TTCCATTCGATT 1 chrX:75496715-75497215 ( 89) TTCAATTTCATT 1 chr10:89707272-89707772 ( 44) TTCCTTTTCTTT 1 chr19:35077070-35077570 ( 30) TTCCTGTCCATT 1 chr19:44125575-44126075 ( 41) TTCAATTCTATT 1 chr20:31066741-31067241 ( 37) TTCCATTGCATT 1 chr5:159098694-159099194 ( 14) TTCCTTTTTCTT 1 chr5:49666427-49666927 ( 34) TTCCATTCCACT 1 chr12:67592106-67592606 ( 86) TTTCTTTTCTTT 1 chrX:119456941-119457441 ( 61) TTTCTTTCTCTT 1 chr1:201641718-201642218 ( 18) TTTCTTTCTCTT 1 chr1:200505321-200505821 ( 88) TTTCTTTTCTTT 1 chr16:14463264-14463764 ( 18) TTTCAGTTCATT 1 chrUn_KI270587v1:1675-21 ( 30) TTTCTTTTGATT 1 chr6:143450536-143451036 ( 17) TGCCTTTTCATT 1 chr6:36594243-36594743 ( 72) TTAAATTCCATT 1 chr1_KI270709v1_random:7 ( 36) TTCCATTCTATG 1 chr19:29688207-29688707 ( 10) TTCCACTCTCTT 1 chr6:44247010-44247510 ( 50) TTTCTGTCCTTT 1 chr13:52194258-52194758 ( 16) TTCCCCTCCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCWTTCCATT MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53222 bayes= 11.9552 E= 1.4e-020 -1177 -1177 -1177 215 -1177 -1177 -326 210 -298 149 -1177 -18 -98 169 -1177 -1177 119 -168 -1177 82 -1177 -168 -168 187 -1177 -1177 -1177 215 -1177 138 -326 19 -1177 149 -226 -40 154 -26 -1177 -98 -1177 -326 -1177 210 -1177 -1177 -326 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCWTTCCATT MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 35 E= 1.4e-020 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.971429 0.028571 0.771429 0.000000 0.200000 0.114286 0.885714 0.000000 0.000000 0.514286 0.085714 0.000000 0.400000 0.000000 0.085714 0.085714 0.828571 0.000000 0.000000 0.000000 1.000000 0.000000 0.714286 0.028571 0.257143 0.000000 0.771429 0.057143 0.171429 0.657143 0.228571 0.000000 0.114286 0.000000 0.028571 0.000000 0.971429 0.000000 0.000000 0.028571 0.971429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCWTTCCATT MEME-6 regular expression -------------------------------------------------------------------------------- TT[CT]C[AT]TT[CT]C[AC]TT -------------------------------------------------------------------------------- Time 4078.41 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCACCAYCATCATCA MEME-7 width = 16 sites = 22 llr = 357 E-value = 1.7e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCACCAYCATCATCA MEME-7 Description -------------------------------------------------------------------------------- Simplified A a1:a:29::a::7::a pos.-specific C :28:78:49::712a: probability G ::::::::::::1::: matrix T :72:3::61:a2:7:: bits 2.1 * ** * 1.9 * * ** ** 1.7 * * ** ** 1.5 * * * *** ** Relative 1.3 * * ** *** ** Entropy 1.1 * ***** *** *** (23.4 bits) 0.9 **************** 0.6 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel ATCACCATCATCATCA consensus T T C T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACCAYCATCATCA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr16:89069058-89069558 - 3 3.25e-10 CGTCACCATC ATCACCACCATCATCA TC chr6:167515978-167516478 + 23 5.68e-10 catcatcatc atcaccatcattatca tcaccatcat chr1:32471762-32472262 + 22 6.89e-10 caccatcatc attaccatcatcatca gtaccatcat chr17:81531946-81532446 - 85 1.14e-09 . ATCACCATCATCACCA TTATCATCAT chr5:3445584-3446084 - 48 1.14e-09 CATCACCACC ATCATCACCATCATCA CCATCACCAC chr5:2439399-2439899 + 82 1.14e-09 catcaacacc atcacaatcatcatca tta chr17:78477683-78478183 + 85 1.46e-09 caccatcacc accaccatcatcatca chr10:1219869-1220369 - 7 1.86e-09 CACCATCACC ATTACCACCATCATCA CCATCA chr16:86464035-86464535 - 13 4.05e-09 CATCACCACT ATCACCATCATCGTCA TCACCAGCAC chr5:176591614-176592114 - 47 1.31e-08 CACCATCACC ATCACAACCATCACCA TCACCTCAAC chr19:55519625-55520125 - 34 1.31e-08 CTTCACAGTC ATCACCACCATGATCA CCTTTCACAC chr7:127259225-127259725 + 77 1.57e-08 taccattatc accaccaccatcacca ccaccact chr5:175620361-175620861 - 7 1.57e-08 CATCACCATC ATCATCATCATTCTCA CCATCA chr1:18858145-18858645 + 36 1.79e-08 caccaacacc atcaccaccatcagca ccatcttcag chr12:132349433-13234993 + 47 2.53e-08 ccattatcat atcaccattatcctca ttgtcaccat chr1:6936955-6937455 + 73 3.20e-08 ttcaccactt accaccactatcatca ccaacaccat chr10:1495715-1496215 + 44 4.14e-08 tattgtgatc atcaccatcattgcca tgattatcat chr17:22052628-22053128 + 34 1.12e-07 tctcaccatt atcatcctcatcctca gcataactat chr12:107463079-10746357 - 80 1.28e-07 TCAAT ACCATCATCATTTTCA TCATCACCAC chr22:27008517-27009017 + 84 1.84e-07 tcatcatcac catatcatcatcatca c chr17:26603652-26604152 - 82 4.12e-07 TTG AATACAAACATCACCA AAAAGTTCCT chr17:46099341-46099841 + 34 6.54e-07 CTTGGTTTCT AATATAGTCATTATCA ATAATGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACCAYCATCATCA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89069058-89069558 3.3e-10 2_[-7]_82 chr6:167515978-167516478 5.7e-10 22_[+7]_62 chr1:32471762-32472262 6.9e-10 21_[+7]_63 chr17:81531946-81532446 1.1e-09 84_[-7] chr5:3445584-3446084 1.1e-09 47_[-7]_37 chr5:2439399-2439899 1.1e-09 81_[+7]_3 chr17:78477683-78478183 1.5e-09 84_[+7] chr10:1219869-1220369 1.9e-09 6_[-7]_78 chr16:86464035-86464535 4.1e-09 12_[-7]_72 chr5:176591614-176592114 1.3e-08 46_[-7]_38 chr19:55519625-55520125 1.3e-08 33_[-7]_51 chr7:127259225-127259725 1.6e-08 76_[+7]_8 chr5:175620361-175620861 1.6e-08 6_[-7]_78 chr1:18858145-18858645 1.8e-08 35_[+7]_49 chr12:132349433-13234993 2.5e-08 46_[+7]_38 chr1:6936955-6937455 3.2e-08 72_[+7]_12 chr10:1495715-1496215 4.1e-08 43_[+7]_41 chr17:22052628-22053128 1.1e-07 33_[+7]_51 chr12:107463079-10746357 1.3e-07 79_[-7]_5 chr22:27008517-27009017 1.8e-07 83_[+7]_1 chr17:26603652-26604152 4.1e-07 81_[-7]_3 chr17:46099341-46099841 6.5e-07 33_[+7]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACCAYCATCATCA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCACCAYCATCATCA width=16 seqs=22 chr16:89069058-89069558 ( 3) ATCACCACCATCATCA 1 chr6:167515978-167516478 ( 23) ATCACCATCATTATCA 1 chr1:32471762-32472262 ( 22) ATTACCATCATCATCA 1 chr17:81531946-81532446 ( 85) ATCACCATCATCACCA 1 chr5:3445584-3446084 ( 48) ATCATCACCATCATCA 1 chr5:2439399-2439899 ( 82) ATCACAATCATCATCA 1 chr17:78477683-78478183 ( 85) ACCACCATCATCATCA 1 chr10:1219869-1220369 ( 7) ATTACCACCATCATCA 1 chr16:86464035-86464535 ( 13) ATCACCATCATCGTCA 1 chr5:176591614-176592114 ( 47) ATCACAACCATCACCA 1 chr19:55519625-55520125 ( 34) ATCACCACCATGATCA 1 chr7:127259225-127259725 ( 77) ACCACCACCATCACCA 1 chr5:175620361-175620861 ( 7) ATCATCATCATTCTCA 1 chr1:18858145-18858645 ( 36) ATCACCACCATCAGCA 1 chr12:132349433-13234993 ( 47) ATCACCATTATCCTCA 1 chr1:6936955-6937455 ( 73) ACCACCACTATCATCA 1 chr10:1495715-1496215 ( 44) ATCACCATCATTGCCA 1 chr17:22052628-22053128 ( 34) ATCATCCTCATCCTCA 1 chr12:107463079-10746357 ( 80) ACCATCATCATTTTCA 1 chr22:27008517-27009017 ( 84) CATATCATCATCATCA 1 chr17:26603652-26604152 ( 82) AATACAAACATCACCA 1 chr17:46099341-46099841 ( 34) AATATAGTCATTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACCAYCATCATCA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50830 bayes= 11.5286 E= 1.7e-032 208 -259 -1110 -1110 -73 -59 -1110 159 -1110 149 -1110 1 215 -1110 -1110 -1110 -1110 141 -1110 27 -31 158 -1110 -1110 201 -259 -259 -1110 -231 41 -1110 139 -1110 173 -1110 -131 215 -1110 -1110 -1110 -1110 -1110 -1110 215 -1110 141 -259 1 169 -101 -159 -231 -1110 -27 -259 169 -1110 187 -1110 -1110 215 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACCAYCATCATCA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 22 E= 1.7e-032 0.954545 0.045455 0.000000 0.000000 0.136364 0.181818 0.000000 0.681818 0.000000 0.772727 0.000000 0.227273 1.000000 0.000000 0.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.181818 0.818182 0.000000 0.000000 0.909091 0.045455 0.045455 0.000000 0.045455 0.363636 0.000000 0.590909 0.000000 0.909091 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.727273 0.045455 0.227273 0.727273 0.136364 0.090909 0.045455 0.000000 0.227273 0.045455 0.727273 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACCAYCATCATCA MEME-7 regular expression -------------------------------------------------------------------------------- AT[CT]A[CT]CA[TC]CAT[CT]A[TC]CA -------------------------------------------------------------------------------- Time 4678.92 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGDKNKKKKGTRTGTG MEME-8 width = 22 sites = 46 llr = 617 E-value = 2.0e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGDKNKKKKGTRTGTG MEME-8 Description -------------------------------------------------------------------------------- Simplified A 22:223:131222:::15112: pos.-specific C ::11:::11:21::::2:11:: probability G :7:7:72624335548:5:8:a matrix T 819:8:82443544527:8:8: bits 2.1 1.9 1.7 * * 1.5 * ** Relative 1.3 * * * ** Entropy 1.1 * * *** * * ** (19.4 bits) 0.9 * * *** * ******* 0.6 ******* ********** 0.4 ******** * ********** 0.2 ********** *********** 0.0 ---------------------- Multilevel TGTGTGTGTGTTGGTGTGTGTG consensus A A TATGGTTGT A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGDKNKKKKGTRTGTG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:205973096-205973596 - 44 8.22e-12 TGGTGTGATG TGTGTGTGTGGTGTGGTATGTG GTGTGTGCAT chr22:27631854-27632354 + 1 1.09e-09 . tatatgtgagtgtgtgtatgtg attgtgtgtg chr5:1929649-1930149 + 2 1.73e-09 a tgtgtgtcatgtgtgttgtgtg atgtgttggc chr5:3323694-3324194 + 68 4.10e-09 atgtgtgtgt tgtgtggtatctgtggtgtgtg atgcacttgg chr7:150003102-150003602 + 42 4.10e-09 tcgtatgtgg aatgtgtggtatgtggtgtgtg ctgtgtgtgt chr6:169863636-169864136 - 78 4.10e-09 G TGTGTGGGTGAGAGTGTATGTG CATCTGTGTT chr5:1929042-1929542 + 32 5.38e-09 gtgtgcatgt tgtgtgtgacgtgtgttgtgtg tgttgcatgt chr1:27086447-27086947 - 79 6.15e-09 . TGTGTAGTGTGTGGTGTGTGTG GTATGTGGGA chr10:1232562-1233062 + 1 9.13e-09 . tgtgtggtatatatggtatgtg tgtggtgtat chr17:77718466-77718966 + 34 1.71e-08 tgtgtgtctc tgtgtgtttgtgggtgcacgtg tgtgtgtctg chr21:41954951-41955451 + 66 2.45e-08 gtaagtgcgt tgcatgtggtgtggtttgtgtg tgtggtgaac chr1:29237092-29237592 + 30 3.48e-08 gtgtggggag tgtctagggtatgtggtgtgtg CTGCCGGGGG chr1:203526806-203527306 - 52 3.90e-08 AGTTTATGTG AGTGTGTCTAGGTGGGTATGTG AGTGTAGGAG chrX:140724055-140724555 - 39 4.36e-08 GTGAGTATGG AATGTGTCTGAATGTGTGTGTG TATGGAATGT chr19:33505491-33505991 - 21 4.88e-08 GTGTGGTGGG TGTGAGTGTGCCGTGTTGTGTG CAGGTGTGTG chr1:23392549-23393049 - 47 4.88e-08 GGACCACTGG TATATATGATGTGTGGAGTGTG GGGGCTGTGT chr1:62266235-62266735 - 27 5.45e-08 GAGGCAGTGG TGTGAATGTTCAGTGGTGTGAG CATGCAGTGT chr8:40820308-40820808 + 9 6.08e-08 tattggtg tgtatatgcatgtgtttatgtg tgcatttgtg chr13:101271859-10127235 + 7 6.79e-08 tgtata agtgtgtaggcatgtgtatgtg cacgagtgtg chr7:155918673-155919173 + 70 9.35e-08 tgtgtttgtg tgtgcatggtgtgtggcatgtg tgcatgtgt chr21:42183832-42184332 + 5 9.35e-08 tgta tgtgtgatgtgtgtggcgtgtg tgcacacatc chr21:45591163-45591663 - 77 1.04e-07 TG TACCTGTGTATGTGTGTGTGTG CCTATGCGGA chr21:45332367-45332867 + 31 1.15e-07 agtgtgtctg tatctgtgtgttggtgcatctg tgtgtctgtg chr10:6407303-6407803 + 2 1.73e-07 A tgtatggtgtttgtgtcatgtg tatggtgtgt chr21:31410213-31410713 + 2 1.91e-07 A TGTGAGTGCGTAAGTGTATGAG ACTGTGTGAG chr21:33895308-33895808 + 72 2.11e-07 tgtgcgtgtg tgcatgtttgtgagtgcatgtg tttgtgc chr19:41918355-41918855 - 31 2.32e-07 GTGTGTGGTT TGTCTGTGATGGGTAGTGTATG TACTGTGTGT chr12:114904524-11490502 + 34 2.82e-07 tgtgtgtgta tgtgtgtgaacatgtgtgagag tgtgtgagag chr10:79025734-79026234 - 74 3.74e-07 GTATG TGTTTATACTGTGTGGTGTGTG GCAGGTCTGT chr16:89023064-89023564 - 37 3.74e-07 TGTGAACGTG TGTGTATGTGACTGGGTGCATG CGTGACTGTG chr22:43737287-43737787 - 3 4.93e-07 TGCATGTATC TGTGAATATATGGGTGTGAGTG GT chr19:33778459-33778959 - 2 5.39e-07 TGCGTGTGTC TGCATATCTGTCTGGGTGTGTG T chr16:57628748-57629248 + 75 6.45e-07 tgactgagcg tttgagtgtgagagtgtgagtg agtg chr19:35297919-35298419 - 24 9.13e-07 GTTTGTGCAG TGTGTAGTGTGTGTTTGATGTG TGGGTAGCAT chr5:110224-110724 - 2 9.95e-07 TGTGTTGCAG ATTGTGTGGGTGTGTGCACGTG T chr18:50967463-50967963 - 54 1.08e-06 TGCTCATACA TATGTGTCATTTTTGGTCTTTG GTTGGGATGA chr18:79797257-79797757 + 49 1.28e-06 tgtacgtgag tatgaatgactggggttatgag agtatgtgag chr19:44213344-44213844 + 38 2.08e-06 tccttttcag actgtgtgatcttTTTTGTTTG TTTTTGTTTC chr9:36842792-36843292 + 47 2.25e-06 tgtatgtgtg catgtgtgtgtgagtgtatcag tgtgtgagcg chr12:132950612-13295111 - 14 2.84e-06 TACATGTCTG TATGTGTGATGTTCGTTATCAG TGTGTGTACA chr6:118895315-118895815 - 1 3.31e-06 CTAGCCTACG TTTGTGTTTTATGTTTAGGGTG chr9:136581415-136581915 - 71 4.14e-06 AGTGAGCG AGTGAGTGAGCAAGTGAATGAG TAAGTGAGCG chr16:72008726-72009226 + 15 9.62e-06 TGCAAATGCT CGTGCGTGTGCATTTGCACGTG GACTCGGTCA chr19:47242074-47242574 + 37 1.34e-05 TGGAACTGTG TGTCTAATAGATTGCGTGTATG CAATATTGTC chr19:53560080-53560580 - 2 1.73e-05 ATGGTGTGGG TGTATATATATATGTGCATATA T chr20:52972214-52972714 + 79 2.21e-05 gaagcggggg tgcgtgcgcgtgtgagtgcgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGDKNKKKKGTRTGTG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:205973096-205973596 8.2e-12 43_[-8]_35 chr22:27631854-27632354 1.1e-09 [+8]_78 chr5:1929649-1930149 1.7e-09 1_[+8]_77 chr5:3323694-3324194 4.1e-09 67_[+8]_11 chr7:150003102-150003602 4.1e-09 41_[+8]_37 chr6:169863636-169864136 4.1e-09 77_[-8]_1 chr5:1929042-1929542 5.4e-09 31_[+8]_47 chr1:27086447-27086947 6.2e-09 78_[-8] chr10:1232562-1233062 9.1e-09 [+8]_78 chr17:77718466-77718966 1.7e-08 33_[+8]_45 chr21:41954951-41955451 2.5e-08 65_[+8]_13 chr1:29237092-29237592 3.5e-08 29_[+8]_49 chr1:203526806-203527306 3.9e-08 51_[-8]_27 chrX:140724055-140724555 4.4e-08 38_[-8]_40 chr19:33505491-33505991 4.9e-08 20_[-8]_58 chr1:23392549-23393049 4.9e-08 46_[-8]_32 chr1:62266235-62266735 5.5e-08 26_[-8]_52 chr8:40820308-40820808 6.1e-08 8_[+8]_70 chr13:101271859-10127235 6.8e-08 6_[+8]_72 chr7:155918673-155919173 9.3e-08 69_[+8]_9 chr21:42183832-42184332 9.3e-08 4_[+8]_74 chr21:45591163-45591663 1e-07 76_[-8]_2 chr21:45332367-45332867 1.2e-07 30_[+8]_48 chr10:6407303-6407803 1.7e-07 1_[+8]_77 chr21:31410213-31410713 1.9e-07 1_[+8]_77 chr21:33895308-33895808 2.1e-07 71_[+8]_7 chr19:41918355-41918855 2.3e-07 30_[-8]_48 chr12:114904524-11490502 2.8e-07 33_[+8]_45 chr10:79025734-79026234 3.7e-07 73_[-8]_5 chr16:89023064-89023564 3.7e-07 36_[-8]_42 chr22:43737287-43737787 4.9e-07 2_[-8]_76 chr19:33778459-33778959 5.4e-07 1_[-8]_77 chr16:57628748-57629248 6.4e-07 74_[+8]_4 chr19:35297919-35298419 9.1e-07 23_[-8]_55 chr5:110224-110724 9.9e-07 1_[-8]_77 chr18:50967463-50967963 1.1e-06 53_[-8]_25 chr18:79797257-79797757 1.3e-06 48_[+8]_30 chr19:44213344-44213844 2.1e-06 37_[+8]_41 chr9:36842792-36843292 2.3e-06 46_[+8]_32 chr12:132950612-13295111 2.8e-06 13_[-8]_65 chr6:118895315-118895815 3.3e-06 [-8]_78 chr9:136581415-136581915 4.1e-06 70_[-8]_8 chr16:72008726-72009226 9.6e-06 14_[+8]_64 chr19:47242074-47242574 1.3e-05 36_[+8]_42 chr19:53560080-53560580 1.7e-05 1_[-8]_77 chr20:52972214-52972714 2.2e-05 78_[+8] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGDKNKKKKGTRTGTG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGDKNKKKKGTRTGTG width=22 seqs=46 chr1:205973096-205973596 ( 44) TGTGTGTGTGGTGTGGTATGTG 1 chr22:27631854-27632354 ( 1) TATATGTGAGTGTGTGTATGTG 1 chr5:1929649-1930149 ( 2) TGTGTGTCATGTGTGTTGTGTG 1 chr5:3323694-3324194 ( 68) TGTGTGGTATCTGTGGTGTGTG 1 chr7:150003102-150003602 ( 42) AATGTGTGGTATGTGGTGTGTG 1 chr6:169863636-169864136 ( 78) TGTGTGGGTGAGAGTGTATGTG 1 chr5:1929042-1929542 ( 32) TGTGTGTGACGTGTGTTGTGTG 1 chr1:27086447-27086947 ( 79) TGTGTAGTGTGTGGTGTGTGTG 1 chr10:1232562-1233062 ( 1) TGTGTGGTATATATGGTATGTG 1 chr17:77718466-77718966 ( 34) TGTGTGTTTGTGGGTGCACGTG 1 chr21:41954951-41955451 ( 66) TGCATGTGGTGTGGTTTGTGTG 1 chr1:29237092-29237592 ( 30) TGTCTAGGGTATGTGGTGTGTG 1 chr1:203526806-203527306 ( 52) AGTGTGTCTAGGTGGGTATGTG 1 chrX:140724055-140724555 ( 39) AATGTGTCTGAATGTGTGTGTG 1 chr19:33505491-33505991 ( 21) TGTGAGTGTGCCGTGTTGTGTG 1 chr1:23392549-23393049 ( 47) TATATATGATGTGTGGAGTGTG 1 chr1:62266235-62266735 ( 27) TGTGAATGTTCAGTGGTGTGAG 1 chr8:40820308-40820808 ( 9) TGTATATGCATGTGTTTATGTG 1 chr13:101271859-10127235 ( 7) AGTGTGTAGGCATGTGTATGTG 1 chr7:155918673-155919173 ( 70) TGTGCATGGTGTGTGGCATGTG 1 chr21:42183832-42184332 ( 5) TGTGTGATGTGTGTGGCGTGTG 1 chr21:45591163-45591663 ( 77) TACCTGTGTATGTGTGTGTGTG 1 chr21:45332367-45332867 ( 31) TATCTGTGTGTTGGTGCATCTG 1 chr10:6407303-6407803 ( 2) TGTATGGTGTTTGTGTCATGTG 1 chr21:31410213-31410713 ( 2) TGTGAGTGCGTAAGTGTATGAG 1 chr21:33895308-33895808 ( 72) TGCATGTTTGTGAGTGCATGTG 1 chr19:41918355-41918855 ( 31) TGTCTGTGATGGGTAGTGTATG 1 chr12:114904524-11490502 ( 34) TGTGTGTGAACATGTGTGAGAG 1 chr10:79025734-79026234 ( 74) TGTTTATACTGTGTGGTGTGTG 1 chr16:89023064-89023564 ( 37) TGTGTATGTGACTGGGTGCATG 1 chr22:43737287-43737787 ( 3) TGTGAATATATGGGTGTGAGTG 1 chr19:33778459-33778959 ( 2) TGCATATCTGTCTGGGTGTGTG 1 chr16:57628748-57629248 ( 75) TTTGAGTGTGAGAGTGTGAGTG 1 chr19:35297919-35298419 ( 24) TGTGTAGTGTGTGTTTGATGTG 1 chr5:110224-110724 ( 2) ATTGTGTGGGTGTGTGCACGTG 1 chr18:50967463-50967963 ( 54) TATGTGTCATTTTTGGTCTTTG 1 chr18:79797257-79797757 ( 49) TATGAATGACTGGGGTTATGAG 1 chr19:44213344-44213844 ( 38) ACTGTGTGATCTTTTTTGTTTG 1 chr9:36842792-36843292 ( 47) CATGTGTGTGTGAGTGTATCAG 1 chr12:132950612-13295111 ( 14) TATGTGTGATGTTCGTTATCAG 1 chr6:118895315-118895815 ( 1) TTTGTGTTTTATGTTTAGGGTG 1 chr9:136581415-136581915 ( 71) AGTGAGTGAGCAAGTGAATGAG 1 chr16:72008726-72009226 ( 15) CGTGCGTGTGCATTTGCACGTG 1 chr19:47242074-47242574 ( 37) TGTCTAATAGATTGCGTGTATG 1 chr19:53560080-53560580 ( 2) TGTATATATATATGTGCATATA 1 chr20:52972214-52972714 ( 79) TGCGTGCGCGTGTGAGTGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGDKNKKKKGTRTGTG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47242 bayes= 10.4057 E= 2.0e-043 -57 -265 -1217 183 -6 -365 134 -179 -1217 -133 -1217 198 -38 -133 134 -337 -57 -265 -1217 183 43 -1217 134 -1217 -238 -365 -85 179 -138 -133 110 -6 43 -166 -33 79 -79 -265 59 87 -21 -66 4 62 -38 -207 15 101 -57 -1217 80 71 -1217 -365 99 94 -238 -365 67 115 -1217 -1217 147 8 -179 -49 -365 167 101 -365 93 -1217 -179 -133 -365 183 -138 -207 155 -238 -57 -1217 -1217 191 -337 -1217 184 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGDKNKKKKGTRTGTG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 46 E= 2.0e-043 0.152174 0.043478 0.000000 0.804348 0.217391 0.021739 0.695652 0.065217 0.000000 0.108696 0.000000 0.891304 0.173913 0.108696 0.695652 0.021739 0.152174 0.043478 0.000000 0.804348 0.304348 0.000000 0.695652 0.000000 0.043478 0.021739 0.152174 0.782609 0.086957 0.108696 0.586957 0.217391 0.304348 0.086957 0.217391 0.391304 0.130435 0.043478 0.413043 0.413043 0.195652 0.173913 0.282609 0.347826 0.173913 0.065217 0.304348 0.456522 0.152174 0.000000 0.478261 0.369565 0.000000 0.021739 0.543478 0.434783 0.043478 0.021739 0.434783 0.500000 0.000000 0.000000 0.760870 0.239130 0.065217 0.195652 0.021739 0.717391 0.456522 0.021739 0.521739 0.000000 0.065217 0.108696 0.021739 0.804348 0.086957 0.065217 0.804348 0.043478 0.152174 0.000000 0.000000 0.847826 0.021739 0.000000 0.978261 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGDKNKKKKGTRTGTG MEME-8 regular expression -------------------------------------------------------------------------------- T[GA]TGT[GA]T[GT][TAG][GT][TG][TG][GT][GT][TG][GT]T[GA]TGTG -------------------------------------------------------------------------------- Time 5273.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 width = 31 sites = 8 llr = 247 E-value = 5.1e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 Description -------------------------------------------------------------------------------- Simplified A 6::::::9::9:9:::4:334::9::9:::: pos.-specific C ::a:::::1::a:::6:415:9918a14:99 probability G 1a::a9a:::::1aa:4:61611:1:::a:: matrix T 3::a:1:19a1::::436:1::::1::6:11 bits 2.1 * * 1.9 **** * * * ** * * 1.7 **** * * * ** * * 1.5 **** ********* * ** * Relative 1.3 ************** *** ** *** Entropy 1.1 *************** * **** ****** (44.5 bits) 0.9 **************** * *********** 0.6 **************** ** *********** 0.4 ******************* *********** 0.2 ******************************* 0.0 ------------------------------- Multilevel AGCTGGGATTACAGGCATGCGCCACCATGCC consensus T TGCAAA C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr10:75110684-75111184 + 61 2.07e-17 cctcccgagt agctgggattacaggtatgcaccaccacgcc cggctaatt chr19:43547045-43547545 + 70 1.05e-16 cctccctagt agctgggattacaggtgcacaccaccatgcc chr19:38956533-38957033 - 5 3.89e-16 CCTCCTGAGT AGCTGGGATTACAGGCTCCCACCACCATGCC TGGC chr10:110014791-11001529 + 12 1.30e-15 cttcccgagt agctgggtttacaggcatgggccaccacgcc tggctaattt chr19:39502318-39502818 + 11 7.04e-15 cctcccaaag tgctgggatttcaggcttgagccaccatgct tggcTGAGAG chr19:36132601-36133101 - 8 7.62e-15 GCCCCAAAAG TGCTGGGATTACAGGCGTGAGGGACCATGCC CAGCCAG chr1:11909098-11909598 - 40 1.69e-13 CCTCCCGAGT GGCTGTGATTACAGGCATGCGCCCTCCTGCC CGGCTAATTT chr19:36173814-36174314 + 20 5.71e-13 cctcctgagt agctgggactacgggtgcatgccagcacgtc tggctaattt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:75110684-75111184 2.1e-17 60_[+9]_9 chr19:43547045-43547545 1.1e-16 69_[+9] chr19:38956533-38957033 3.9e-16 4_[-9]_65 chr10:110014791-11001529 1.3e-15 11_[+9]_58 chr19:39502318-39502818 7e-15 10_[+9]_59 chr19:36132601-36133101 7.6e-15 7_[-9]_62 chr1:11909098-11909598 1.7e-13 39_[-9]_30 chr19:36173814-36174314 5.7e-13 19_[+9]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCTGGGATTACAGGYDYGMRCCACCAYGCC width=31 seqs=8 chr10:75110684-75111184 ( 61) AGCTGGGATTACAGGTATGCACCACCACGCC 1 chr19:43547045-43547545 ( 70) AGCTGGGATTACAGGTGCACACCACCATGCC 1 chr19:38956533-38957033 ( 5) AGCTGGGATTACAGGCTCCCACCACCATGCC 1 chr10:110014791-11001529 ( 12) AGCTGGGTTTACAGGCATGGGCCACCACGCC 1 chr19:39502318-39502818 ( 11) TGCTGGGATTTCAGGCTTGAGCCACCATGCT 1 chr19:36132601-36133101 ( 8) TGCTGGGATTACAGGCGTGAGGGACCATGCC 1 chr1:11909098-11909598 ( 40) GGCTGTGATTACAGGCATGCGCCCTCCTGCC 1 chr19:36173814-36174314 ( 20) AGCTGGGACTACGGGTGCATGCCAGCACGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41860 bayes= 12.353 E= 5.1e-022 147 -965 -113 15 -965 -965 187 -965 -965 187 -965 -965 -965 -965 -965 214 -965 -965 187 -965 -965 -965 167 -85 -965 -965 187 -965 195 -965 -965 -85 -965 -113 -965 195 -965 -965 -965 214 195 -965 -965 -85 -965 187 -965 -965 195 -965 -113 -965 -965 -965 187 -965 -965 -965 187 -965 -965 119 -965 73 73 -965 45 15 -965 45 -965 147 15 -113 119 -965 15 87 -113 -85 73 -965 119 -965 -965 167 -113 -965 -965 167 -113 -965 195 -113 -965 -965 -965 145 -113 -85 -965 187 -965 -965 195 -113 -965 -965 -965 45 -965 147 -965 -965 187 -965 -965 167 -965 -85 -965 167 -965 -85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 8 E= 5.1e-022 0.625000 0.000000 0.125000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.875000 0.000000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.375000 0.000000 0.375000 0.250000 0.000000 0.375000 0.000000 0.625000 0.250000 0.125000 0.625000 0.000000 0.250000 0.500000 0.125000 0.125000 0.375000 0.000000 0.625000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.125000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.750000 0.125000 0.125000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.875000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGGATTACAGGYDYGMRCCACCAYGCC MEME-9 regular expression -------------------------------------------------------------------------------- [AT]GCTGGGATTACAGG[CT][AGT][TC][GA][CA][GA]CCACCA[TC]GCC -------------------------------------------------------------------------------- Time 5838.44 secs. ******************************************************************************** ******************************************************************************** MOTIF AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 width = 43 sites = 6 llr = 249 E-value = 4.5e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 Description -------------------------------------------------------------------------------- Simplified A 82282a:8a2a:8:73:225:2:a::22:a:7::::a333a28 pos.-specific C ::3:::2::2:7::22::2::2::83::5::2:::::::::7: probability G 27::2:3::::::::::::5753:::::5:2:::::::7:::: matrix T :2527:52:7:32a25a87:327:2788::82aaaa:7:7:22 bits 2.1 * * * * * * * ***** * 1.9 * * * * * * * ***** * 1.7 * * * * * * * ***** * 1.5 * * * ** * ** ** * ** ** ***** * * Relative 1.3 * * * ** * ** ** ** ** ** ****** ** * Entropy 1.1 * * * ** **** ** ** ****** ** ********* * (59.9 bits) 0.9 * *** ******** ***** ******************* * 0.6 ********************* ********************* 0.4 ********************* ********************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel AGTATATAATACATATTTTAGGTACTTTCATATTTTATGTACA consensus C G T A GT G C G AAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chrUn_KI270467v1:2908-34 + 6 1.47e-26 cgtac agtatataatacataatttgggtactttgatattttatgtaca gtatgtaata chr4:49709154-49709654 - 39 2.24e-25 TTTTATGTAC AGTATATAATACATACTTTGGGTACTTTGATATTTTATGTACA GTATATAATA chrUn_KI270467v1:3122-36 + 1 1.07e-23 . agtatacaatatatattttggctactttgatattttatgtaca gtttacaata chrUn_KI270467v1:2038-25 + 1 2.43e-21 . agaatataatatatctttcatgtaccttcatattttatgtaca gtatacaata chr21:31549046-31549546 + 58 2.93e-16 GCAGAATCAT GACTAAGTAAACATTTTTTATTGACTTTCAGCTTTTAAAAATA chr19:30029353-30029853 - 9 2.07e-15 ACAATGACTA ATCAGAGAACACTTAATAAAGAGATCAACATTTTTTAAAAAAT GGAAATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:2908-34 1.5e-26 5_[+10]_52 chr4:49709154-49709654 2.2e-25 38_[-10]_19 chrUn_KI270467v1:3122-36 1.1e-23 [+10]_57 chrUn_KI270467v1:2038-25 2.4e-21 [+10]_57 chr21:31549046-31549546 2.9e-16 57_[+10] chr19:30029353-30029853 2.1e-15 8_[-10]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA width=43 seqs=6 chrUn_KI270467v1:2908-34 ( 6) AGTATATAATACATAATTTGGGTACTTTGATATTTTATGTACA 1 chr4:49709154-49709654 ( 39) AGTATATAATACATACTTTGGGTACTTTGATATTTTATGTACA 1 chrUn_KI270467v1:3122-36 ( 1) AGTATACAATATATATTTTGGCTACTTTGATATTTTATGTACA 1 chrUn_KI270467v1:2038-25 ( 1) AGAATATAATATATCTTTCATGTACCTTCATATTTTATGTACA 1 chr21:31549046-31549546 ( 58) GACTAAGTAAACATTTTTTATTGACTTTCAGCTTTTAAAAATA 1 chr19:30029353-30029853 ( 9) ATCAGAGAACACTTAATAAAGAGATCAACATTTTTTAAAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34684 bayes= 12.9443 E= 4.5e-019 188 -923 -72 -923 -44 -923 128 -44 -44 28 -923 114 188 -923 -923 -44 -44 -923 -72 156 214 -923 -923 -923 -923 -72 28 114 188 -923 -923 -44 214 -923 -923 -923 -44 -72 -923 156 214 -923 -923 -923 -923 128 -923 56 188 -923 -923 -44 -923 -923 -923 214 156 -72 -923 -44 56 -72 -923 114 -923 -923 -923 214 -44 -923 -923 188 -44 -72 -923 156 114 -923 87 -923 -923 -923 128 56 -44 -72 87 -44 -923 -923 28 156 214 -923 -923 -923 -923 160 -923 -44 -923 28 -923 156 -44 -923 -923 188 -44 -923 -923 188 -923 87 87 -923 214 -923 -923 -923 -923 -923 -72 188 156 -72 -923 -44 -923 -923 -923 214 -923 -923 -923 214 -923 -923 -923 214 -923 -923 -923 214 214 -923 -923 -923 56 -923 -923 156 56 -923 128 -923 56 -923 -923 156 214 -923 -923 -923 -44 128 -923 -44 188 -923 -923 -44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 6 E= 4.5e-019 0.833333 0.000000 0.166667 0.000000 0.166667 0.000000 0.666667 0.166667 0.166667 0.333333 0.000000 0.500000 0.833333 0.000000 0.000000 0.166667 0.166667 0.000000 0.166667 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.333333 0.500000 0.833333 0.000000 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.166667 0.166667 0.000000 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.666667 0.166667 0.000000 0.166667 0.333333 0.166667 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.000000 0.833333 0.166667 0.166667 0.000000 0.666667 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.666667 0.333333 0.166667 0.166667 0.500000 0.166667 0.000000 0.000000 0.333333 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.333333 0.000000 0.666667 0.166667 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.833333 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.666667 0.166667 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.333333 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.666667 1.000000 0.000000 0.000000 0.000000 0.166667 0.666667 0.000000 0.166667 0.833333 0.000000 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYATAKAATAYATAWTTTRKGKACYTTSATATTTTAWRWACA MEME-10 regular expression -------------------------------------------------------------------------------- AG[TC]ATA[TG]AATA[CT]ATA[TA]TTT[AG][GT]G[TG]AC[TC]TT[CG]ATATTTTA[TA][GA][TA]ACA -------------------------------------------------------------------------------- Time 6392.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40494158-40494658 9.35e-04 2_[-2(1.37e-06)]_28_[+3(1.54e-05)]_\ 7_[-2(2.56e-06)]_15 chr18:50967463-50967963 3.41e-04 53_[-8(1.08e-06)]_25 chr5:10182761-10183261 4.89e-06 22_[+1(1.07e-05)]_50 chr8:19767167-19767667 9.45e-03 44_[+10(8.69e-05)]_13 chr21:45437844-45438344 1.76e-09 9_[+4(1.45e-08)]_22_[+4(1.45e-08)]_\ 8_[+1(4.69e-06)]_1 chr19:44187197-44187697 2.83e-04 53_[+10(5.98e-06)]_4 chr6:16906552-16907052 5.28e-15 30_[-4(5.05e-08)]_16_[+2(1.88e-06)]_\ 5_[-3(5.17e-05)]_1 chr17:82462023-82462523 9.22e-03 100 chr6:26285229-26285729 4.86e-02 42_[-2(7.17e-05)]_42 chr19:36173814-36174314 7.91e-10 19_[+9(5.71e-13)]_4_[-1(4.87e-07)]_\ 18 chr1:236101273-236101773 2.94e-11 18_[-1(8.20e-10)]_10_[-1(7.80e-09)]_\ 16 chr17:82065662-82066162 9.22e-01 100 chr12:57111965-57112465 6.83e-18 1_[+4(1.12e-06)]_40_[+1(6.94e-13)]_\ 15 chr1:241423818-241424318 9.93e-01 100 chr7:152675704-152676204 9.93e-01 100 chr21:37196185-37196685 2.04e-01 15_[-1(3.19e-05)]_57 chr10:96129667-96130167 1.00e+00 100 chr7:151276093-151276593 5.21e-02 12_[+2(2.96e-06)]_72 chr19:38223666-38224166 3.21e-01 100 chr4:49119944-49120444 1.11e-14 2_[+5(1.47e-10)]_4_[+5(4.43e-07)]_\ 16_[+3(1.25e-09)]_4_[+3(2.94e-10)]_10 chr19:480623-481123 2.73e-05 11_[+2(1.61e-06)]_48_[+2(1.24e-05)]_\ 9 chr17:79498386-79498886 4.46e-05 17_[+1(7.45e-06)]_16_[+1(1.18e-07)]_\ 11 chr1:26695435-26695935 7.11e-01 100 chr7:148605098-148605598 1.22e-01 100 chr3:12994523-12995023 9.11e-01 100 chr5:2439399-2439899 1.19e-10 12_[+7(4.05e-09)]_2_[+7(5.77e-05)]_\ 1_[-2(2.56e-06)]_18_[+7(1.14e-09)]_3 chrX:75496715-75497215 1.52e-04 14_[+1(8.65e-05)]_4_[-6(2.56e-05)]_\ 30_[-6(1.02e-06)] chr1:227802974-227803474 3.08e-04 60_[-6(4.41e-05)]_28 chr19:40610093-40610593 3.58e-01 100 chr1:120133714-120134214 3.29e-01 100 chr19:50803618-50804118 9.82e-03 61_[+1(3.52e-06)]_11 chr17:30906052-30906552 1.00e+00 100 chr1:113931658-113932158 3.83e-04 47_[-1(3.46e-05)]_25 chr1:200505321-200505821 4.60e-06 19_[+2(1.61e-06)]_13_[+2(8.17e-07)]_\ 23_[-6(3.30e-06)]_1 chr17:74203575-74204075 9.22e-02 24_[+2(4.08e-05)]_60 chr8:40820308-40820808 1.18e-14 8_[+8(6.08e-08)]_5_[-1(8.64e-11)]_2_\ [-1(6.27e-08)]_7 chr1:203526806-203527306 1.12e-14 10_[-8(3.10e-09)]_8_[+4(2.36e-05)]_\ 10_[+1(8.20e-10)]_6 chr5:49666427-49666927 6.67e-15 14_[+3(1.47e-10)]_3_[+6(2.94e-06)]_\ 18_[+5(9.74e-08)]_5_[+6(2.94e-06)]_4 chr19:28563577-28564077 1.26e-02 46_[-5(7.77e-05)]_38 chr19:37778836-37779336 4.81e-02 39_[+2(9.75e-07)]_45 chr19:28680655-28681155 1.62e-08 21_[+1(1.16e-06)]_21_[+1(2.12e-05)]_\ 2 chr15:75347408-75347908 9.13e-01 100 chr1:28581498-28581998 2.96e-01 100 chr18:79569655-79570155 1.88e-03 30_[-2(1.61e-06)]_19_[-2(2.71e-05)]_\ 19 chr10:1232562-1233062 1.85e-06 [+8(9.13e-09)]_9_[-1(1.04e-07)]_13_\ [+8(1.08e-06)]_6 chr20:60142-60642 2.05e-10 4_[+3(7.95e-08)]_4_[+3(4.66e-06)]_7_\ [+5(1.19e-07)]_1_[+3(2.02e-06)]_4_[+3(1.30e-07)] chr1:226309393-226309893 1.20e-01 100 chr19:33434704-33435204 6.17e-02 10_[+2(3.69e-05)]_74 chrX:136880312-136880812 3.74e-01 100 chr19:33778459-33778959 5.59e-11 1_[-8(5.39e-07)]_1_[+4(3.62e-08)]_\ [+4(5.22e-05)]_2_[+4(1.27e-09)]_4_[+4(6.21e-06)]_6 chr8:37626540-37627040 1.76e-03 100 chr22:21982633-21983133 7.88e-01 100 chr19:53979195-53979695 7.72e-04 19_[+2(2.44e-05)]_30_[+8(3.54e-05)]_\ 13 chr20:20363743-20364243 7.99e-01 100 chr17:36135951-36136451 3.29e-01 100 chr1:227050022-227050522 5.11e-04 82_[-4(7.86e-06)]_2 chr19:36132601-36133101 3.10e-07 7_[-9(7.62e-15)]_62 chrX:73852277-73852777 3.99e-04 5_[+10(4.21e-05)]_33_[-5(9.67e-05)]_\ 3 chr5:3445584-3446084 3.79e-10 [-7(1.25e-05)]_4_[-7(3.25e-10)]_20_\ [-7(3.25e-10)]_2_[-7(3.25e-10)]_10 chr19:35077070-35077570 3.14e-04 29_[-6(1.28e-06)]_59 chr1:229933401-229933901 1.81e-02 39_[+1(7.47e-05)]_33 chr19:43671430-43671930 6.26e-11 7_[+10(8.66e-09)]_50 chr1:201641718-201642218 1.71e-05 [-2(8.64e-06)]_1_[+6(3.30e-06)]_11_\ [-2(1.61e-06)]_6_[+6(2.65e-05)]_5_[-2(1.10e-05)]_5 chr15:75443495-75443995 3.55e-03 100 chr2:85539084-85539584 2.05e-01 52_[-2(8.57e-05)]_32 chr19:39997158-39997658 2.84e-04 10_[-1(3.87e-06)]_62 chr1:23392549-23393049 9.71e-08 9_[+1(3.46e-07)]_9_[-8(4.88e-08)]_\ 32 chr6:24720318-24720818 3.93e-07 11_[+2(5.16e-06)]_26_[-6(3.60e-07)]_\ 35 chr10:96124961-96125461 9.39e-08 [-1(1.43e-06)]_72 chr6:118895315-118895815 1.02e-04 [-8(3.31e-06)]_78 chr19:38956533-38957033 1.66e-08 4_[-9(3.89e-16)]_65 chr1:234607334-234607834 6.29e-01 100 chr17:44200443-44200943 8.02e-01 100 chr12:69470334-69470834 9.45e-01 100 chr6:34942708-34943208 2.26e-08 12_[-2(3.92e-07)]_3_[+6(9.00e-06)]_\ 7_[+6(7.27e-07)]_7_[+3(5.06e-08)]_15 chr1:35557716-35558216 1.00e+00 100 chr8:22089365-22089865 9.95e-01 100 chr7:140639928-140640428 1.75e-08 [+4(1.68e-07)]_10_[+4(2.78e-07)]_10_\ [+4(8.73e-10)]_32 chr5:175620361-175620861 3.20e-11 6_[-7(1.57e-08)]_2_[-7(2.60e-09)]_8_\ [-7(1.36e-07)]_5_[-7(4.76e-07)]_15 chr6:170306710-170307210 9.35e-01 100 chr17:46099341-46099841 4.35e-04 33_[+7(6.54e-07)]_51 chr1:18097107-18097607 2.09e-04 5_[-2(5.16e-06)]_3_[-2(2.96e-06)]_\ 20_[-2(4.74e-07)]_[-2(2.20e-06)]_8 chr15:66814320-66814820 6.22e-02 13_[-10(9.76e-05)]_44 chr1:180455050-180455550 2.28e-06 6_[+1(2.50e-05)]_1_[+4(8.03e-05)]_\ 17_[-3(3.83e-05)]_16 chr7:112450414-112450914 9.36e-01 100 chr22_KI270735v1_random: 2.52e-13 10_[+5(9.19e-10)]_14_[+5(1.47e-10)]_\ 9_[+5(1.47e-10)]_19 chr10:117089625-11709012 3.75e-06 16_[+1(7.45e-06)]_26_[+1(3.88e-07)]_\ 2 chr15:89401148-89401648 1.87e-01 100 chr5:124154539-124155039 1.52e-04 28_[+7(8.48e-05)]_10_[-6(7.78e-05)]_\ 34 chr22_KI270733v1_random: 3.88e-01 34_[-2(5.89e-06)]_10_[+2(6.55e-05)]_\ 24 chr10:96089924-96090424 4.82e-01 100 chr6:44246420-44246920 6.71e-01 100 chr10:110014791-11001529 1.31e-11 11_[+9(1.30e-15)]_5_[-1(1.04e-06)]_\ 25 chr17:16216896-16217396 7.57e-01 100 chr17:68511916-68512416 5.97e-02 45_[+2(1.10e-05)]_39 chr6:167515978-167516478 1.01e-10 7_[+7(1.47e-10)]_11_[+7(1.14e-09)]_\ 8_[+7(2.60e-09)]_2_[+7(1.14e-09)]_8 chr21:31549046-31549546 6.41e-10 57_[+10(2.93e-16)] chr9:132944388-132944888 8.47e-01 100 chrUn_KI270465v1:767-126 2.33e-03 50_[-4(7.11e-05)]_34 chr5:140711091-140711591 1.08e-01 100 chr1:236269766-236270266 5.25e-03 3_[+10(1.53e-05)]_26_[+1(3.19e-05)] chr1:62266235-62266735 5.58e-08 26_[-8(5.45e-08)]_4_[+4(1.24e-05)]_\ 2_[-8(3.48e-08)]_8 chr16:77212385-77212885 3.59e-01 100 chr1:100882605-100883105 1.56e-05 25_[+1(1.86e-08)]_47 chrUn_GL000224v1:3578-40 2.65e-02 100 chr5:110224-110724 3.79e-06 [+1(7.57e-07)]_2_[+1(9.38e-07)]_25_\ [+4(1.47e-06)]_1 chr8:23068512-23069012 8.78e-01 100 chr19:39135785-39136285 1.30e-01 8_[-2(1.57e-05)]_16_[-2(1.40e-05)]_\ 15_[-2(3.69e-05)]_13 chr19:33505491-33505991 1.66e-10 20_[-8(4.88e-08)]_4_[+1(1.34e-07)]_\ 6_[+4(1.06e-07)]_4 chr12:56116801-56117301 1.15e-01 100 chr5:1929042-1929542 1.96e-04 4_[+8(8.38e-07)]_5_[+8(5.38e-09)]_\ 14_[+8(1.93e-08)]_11 chr1:183060659-183061159 7.99e-05 1_[-1(2.30e-05)]_4_[+2(4.50e-05)]_\ 12_[-5(1.89e-05)]_23 chr5:57209408-57209908 1.49e-03 47_[+10(1.90e-05)]_10 chr6:28141937-28142437 9.94e-01 100 chr5:171387903-171388403 9.33e-01 100 chr19:17075073-17075573 3.54e-01 100 chr21:43658882-43659382 3.98e-01 100 chr19:53560080-53560580 2.79e-12 10_[+1(1.40e-08)]_3_[+1(5.77e-10)]_\ 3_[+4(6.45e-08)]_12 chr11:112073931-11207443 4.52e-01 12_[+5(2.53e-05)]_72 chr6:139374276-139374776 9.96e-01 100 chr12:107463079-10746357 1.39e-10 [-7(7.47e-05)]_5_[-7(8.14e-09)]_2_\ [-7(2.93e-06)]_6_[-7(3.25e-10)]_2_[-7(1.28e-07)]_5 chr6:43575477-43575977 9.90e-01 100 chr22:35371855-35372355 8.80e-01 100 chr5:177981555-177982055 7.13e-02 73_[+2(6.55e-05)]_11 chr15:40953352-40953852 4.29e-01 35_[-9(6.55e-06)]_34 chr1:231733029-231733529 6.03e-06 8_[+2(1.96e-05)]_4_[-1(7.13e-08)]_\ 11_[-1(1.34e-07)]_5 chr11:119095045-11909554 1.00e+00 100 chr19:54200782-54201282 2.08e-01 100 chr17:58083417-58083917 9.86e-01 100 chr14:103520979-10352147 6.89e-01 100 chr16:70523834-70524334 6.95e-02 100 chr6:16129083-16129583 2.26e-02 74_[+2(7.62e-06)]_10 chr10:26858526-26859026 6.07e-04 12_[+1(3.19e-05)]_60 chr15:68279352-68279852 1.52e-05 6_[+10(2.20e-05)]_51 chr4:49511186-49511686 1.26e-01 18_[-6(9.89e-05)]_70 chr1:29237092-29237592 8.01e-04 29_[+8(3.48e-08)]_49 chrX:153512211-153512711 1.49e-11 72_[-8(2.18e-08)]_6 chr22:28492199-28492699 3.17e-04 13_[+1(4.26e-06)]_6_[+10(6.64e-06)]_\ 10 chr1:16270633-16271133 4.52e-02 100 chr16:89069058-89069558 2.81e-10 2_[-7(3.25e-10)]_11_[-7(1.47e-10)]_\ 8_[-7(3.25e-10)]_8_[-7(3.25e-10)]_7 chr10:68332962-68333462 2.59e-03 3_[-1(8.43e-07)]_69 chr5:6378217-6378717 7.50e-01 100 chr12:65824602-65825102 6.14e-02 100 chr5:34007657-34008157 1.00e+00 100 chr1:42924468-42924968 9.25e-01 100 chr21:42183832-42184332 3.00e-11 4_[+8(9.35e-08)]_25_[-1(1.22e-11)]_\ 21 chr5:41904337-41904837 7.79e-01 100 chr19:30182910-30183410 1.16e-03 38_[+1(1.16e-05)]_34 chr15:66504472-66504972 2.71e-02 1_[-2(4.50e-05)]_83 chr17:48891812-48892312 1.09e-01 18_[-1(9.76e-06)]_54 chr1:236076415-236076915 5.81e-04 17_[-10(1.32e-05)]_15_\ [-6(8.14e-05)]_13 chr10:20550128-20550628 5.00e-03 35_[-1(1.65e-05)]_37 chr1:231040280-231040780 5.22e-01 100 chr16:30693389-30693889 1.77e-03 100 chr7:149126363-149126863 3.16e-01 100 chr19:44215238-44215738 2.20e-04 4_[-1(4.38e-05)]_47_[+3(6.13e-05)]_\ 5 chr19:43640011-43640511 2.57e-01 100 chr5:138338137-138338637 7.83e-02 25_[-2(4.51e-06)]_59 chr1:16905416-16905916 1.07e-01 70_[+5(8.25e-05)]_14 chr19:39502318-39502818 5.70e-08 10_[+9(7.04e-15)]_59 chr20:31066741-31067241 7.74e-16 3_[-5(1.53e-05)]_4_[-5(5.63e-10)]_\ 22_[-6(7.67e-08)]_5_[-5(1.47e-10)]_6 chr1:146377089-146377589 4.49e-01 100 chrX:120309467-120309967 4.58e-05 1_[-2(2.96e-06)]_44_[-2(1.37e-06)]_\ 1_[-4(5.64e-07)]_6 chr1:13750084-13750584 2.78e-02 37_[+10(2.93e-05)]_20 chr16:69424602-69425102 5.27e-01 100 chr10:13301905-13302405 3.64e-03 100 chr19:3776454-3776954 1.94e-03 27_[-1(2.74e-07)]_15_[-1(4.69e-06)]_\ 2 chr5:174799843-174800343 3.98e-06 19_[+4(9.90e-06)]_43_[-8(6.79e-08)] chr1:205973096-205973596 4.53e-15 8_[+4(3.19e-09)]_1_[+4(4.49e-06)]_2_\ [-8(8.22e-12)]_7_[+4(2.30e-06)]_12 chr17:78477683-78478183 2.53e-11 7_[+7(3.25e-10)]_13_[+7(3.25e-10)]_\ 2_[+7(2.11e-08)]_14_[+7(1.46e-09)] chr1:229334377-229334877 4.44e-05 2_[+10(8.58e-07)]_55 chr12:132950612-13295111 1.78e-08 13_[-8(2.84e-06)]_11_[+1(1.92e-07)]_\ 1_[+4(5.05e-08)]_9 chr9:36842792-36843292 2.23e-12 23_[-4(1.00e-08)]_2_[-4(1.48e-09)]_\ 21_[+8(1.18e-08)] chr1:32334802-32335302 4.64e-03 40_[-2(9.77e-06)]_12_[+3(5.46e-05)]_\ 16 chr10:101694480-10169498 1.37e-03 55_[+3(2.26e-05)]_29 chr17:714270-714770 1.42e-02 18_[-2(5.16e-06)]_66 chr19:34676945-34677445 8.71e-02 100 chr1:1406233-1406733 9.69e-01 100 chr6:169863636-169864136 4.43e-15 12_[+4(8.18e-09)]_3_[+1(7.04e-11)]_\ 18_[-8(4.10e-09)]_1 chr19:30032979-30033479 1.17e-02 100 chr1:225777763-225778263 6.64e-01 100 chr15:98437773-98438273 9.43e-02 2_[+2(5.44e-05)]_18_[+2(5.44e-05)]_\ 20_[-1(3.19e-05)] chr16:86464035-86464535 4.77e-09 12_[-7(4.05e-09)]_8_[-7(2.97e-09)]_\ 2_[-7(4.64e-05)]_14_[-7(4.05e-09)] chr15:73699632-73700132 5.64e-04 52_[-2(5.44e-05)]_[-3(9.38e-05)]_16 chr21:37531991-37532491 5.64e-07 13_[+1(7.45e-06)]_59 chr19:33177317-33177817 1.00e+00 100 chr11:78188207-78188707 7.29e-02 49_[+2(7.62e-06)]_35 chr17:41688761-41689261 5.86e-03 61_[-3(3.44e-07)]_23 chr6:36595554-36596054 5.74e-03 31_[-10(5.46e-05)]_26 chr10:60778396-60778896 9.97e-01 100 chr1:244653156-244653656 9.90e-01 100 chr16:5730641-5731141 1.01e-06 6_[+7(3.72e-08)]_5_[+7(1.79e-08)]_\ 14_[+7(7.15e-07)]_27 chr6:24776639-24777139 4.41e-04 67_[-1(4.26e-06)]_5 chr13:101271859-10127235 2.48e-10 6_[+8(6.79e-08)]_5_[-4(1.48e-09)]_\ 24_[+8(8.41e-08)]_5 chr19:35701655-35702155 4.35e-03 2_[-1(8.93e-06)]_70 chr19:43547045-43547545 2.63e-09 21_[+9(1.75e-05)]_17_[+9(1.05e-16)] chr1:227734875-227735375 9.67e-01 100 chr19:47242074-47242574 2.65e-04 32_[+8(1.77e-06)]_46 chr1:20486456-20486956 5.86e-01 100 chr17:39153614-39154114 5.50e-02 61_[-6(4.41e-05)]_27 chr10:29409420-29409920 7.76e-01 100 chr1:28506022-28506522 9.73e-01 100 chr18:50281891-50282391 9.78e-01 100 chr10:89707272-89707772 1.94e-09 11_[+6(1.70e-06)]_3_[+3(1.00e-07)]_\ 7_[+3(1.07e-06)]_12_[+6(1.08e-06)]_11 chr19:39845761-39846261 8.36e-01 100 chr17:4143566-4144066 8.24e-01 100 chr16:14463264-14463764 1.24e-02 17_[-6(4.66e-06)]_71 chr2:27663640-27664140 1.09e-01 4_[-6(9.89e-05)]_84 chr1:6936955-6937455 3.74e-07 15_[+1(5.44e-07)]_3_[+7(9.34e-08)]_\ 10_[+7(3.20e-08)]_12 chr22:41833053-41833553 1.00e+00 100 chr21:41954951-41955451 4.87e-11 [-4(1.47e-06)]_4_[-1(3.88e-07)]_17_\ [+8(2.45e-08)]_13 chr10:1498864-1499364 1.64e-02 38_[+1(6.80e-06)]_34 chr19:44217392-44217892 8.15e-01 100 chr10:18557696-18558196 2.50e-15 2_[-6(7.78e-05)]_7_[-5(3.80e-07)]_6_\ [-3(3.02e-06)]_6_[-3(7.10e-10)]_19 chr8:25458960-25459460 8.68e-01 100 chr2:177263356-177263856 9.98e-01 100 chr16:22297447-22297947 3.44e-01 29_[+9(3.43e-05)]_40 chr14:106390790-10639129 2.69e-04 [-2(6.55e-05)]_13_[-8(2.08e-05)]_\ [-8(2.35e-05)]_27 chr16:89023064-89023564 1.25e-12 1_[+4(3.19e-09)]_3_[-8(5.53e-05)]_3_\ [+4(1.87e-07)]_10_[+1(1.62e-09)]_1 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[+5(2.87e-09)]_12_[+3(7.10e-10)]_6 chr10:42079437-42079937 4.51e-13 1_[-6(1.02e-06)]_11_[-5(2.87e-09)]_\ 8_[-3(7.10e-10)]_7_[-3(1.03e-05)]_13 chr19:49929086-49929586 7.81e-01 57_[-2(7.85e-05)]_27 chr19:37655826-37656326 6.14e-01 100 chr2:38750960-38751460 3.08e-01 100 chr21:45332367-45332867 2.54e-08 1_[-4(2.16e-08)]_13_[+8(1.15e-07)]_\ 1_[-4(3.86e-07)]_2_[-4(9.90e-06)]_13 chr18:80033421-80033921 5.83e-01 100 chr21:39313584-39314084 5.74e-02 51_[+2(6.71e-06)]_33 chr6:131628067-131628567 9.97e-01 100 chr9:133030737-133031237 9.73e-01 100 chr12:389112-389612 1.42e-02 72_[-2(2.20e-06)]_12 chr19:35947357-35947857 8.83e-18 40_[-1(6.94e-13)]_[-4(3.11e-08)]_16 chr7:155918673-155919173 2.33e-16 4_[-1(1.21e-08)]_8_[-1(2.12e-12)]_1_\ [+8(9.35e-08)]_9 chr1:40257933-40258433 4.31e-01 100 chr20:52972214-52972714 9.22e-18 11_[+8(8.81e-13)]_14_[-4(8.73e-10)]_\ 16_[-4(2.10e-06)]_5 chr5:173327961-173328461 3.08e-02 81_[-2(1.16e-06)]_3 chr15:65610824-65611324 2.82e-02 100 chr16:57628748-57629248 9.12e-12 9_[-1(4.95e-09)]_10_[-4(1.06e-07)]_\ 16_[-4(9.32e-08)]_5 chr1:228457428-228457928 9.98e-01 100 chr17:63600656-63601156 9.55e-01 100 chr9:137241105-137241605 4.20e-01 100 chr1:212791633-212792133 1.00e+00 100 chr6:170398646-170399146 7.48e-03 100 chr1:28648545-28649045 3.25e-06 58_[-1(9.38e-07)]_14 chr15:89893817-89894317 9.93e-01 100 chr12:27710694-27711194 8.74e-02 59_[-4(3.51e-06)]_25 chr10:41882172-41882672 8.04e-11 1_[-3(1.70e-05)]_11_[-5(8.20e-08)]_\ 12_[-3(2.97e-09)]_28 chr17:76736844-76737344 9.91e-01 100 chr20:31075502-31076002 1.72e-14 1_[-3(1.47e-10)]_19_[-3(1.47e-10)]_\ 11_[-5(1.47e-10)]_7_[-6(3.84e-08)]_2 chrUn_KI270587v1:1675-21 7.16e-04 29_[-6(6.26e-06)]_59 chr10:22229112-22229612 7.88e-01 100 chr1:183471823-183472323 1.13e-02 49_[+2(4.95e-05)]_35 chr19:50136261-50136761 4.95e-01 100 chr19:41310205-41310705 6.34e-02 100 chr19:13153062-13153562 9.72e-01 100 chr17:74514007-74514507 5.54e-02 6_[+2(3.01e-05)]_48_[-1(4.05e-05)]_\ 2 chr1:93078889-93079389 9.99e-01 100 chr1:44213165-44213665 9.05e-01 100 chr10:38527290-38527790 9.21e-13 20_[-3(1.25e-09)]_4_[-3(1.47e-10)]_\ 6_[-5(2.27e-09)]_2_[-3(4.40e-05)]_4 chr10:1219869-1220369 1.93e-10 6_[-7(1.86e-09)]_14_[-7(1.14e-09)]_\ 5_[-7(1.20e-05)]_2_[-7(1.14e-09)]_9 chr15:69452747-69453247 6.61e-01 100 chr20:58650941-58651441 9.70e-01 100 chr19:1383515-1384015 9.70e-01 100 chr6:44247010-44247510 1.34e-04 28_[-1(1.16e-06)]_44 chrUn_GL000216v2:364-864 5.32e-14 [+3(1.17e-06)]_7_[+5(1.47e-10)]_18_\ [+5(1.47e-10)]_[+6(3.84e-08)]_15 chr17:45148408-45148908 1.81e-01 100 chr1:25998119-25998619 2.82e-01 65_[-2(1.24e-05)]_19 chr1:155244584-155245084 1.48e-02 5_[+2(3.34e-05)]_52_[+2(8.17e-07)]_\ 11 chr1:236097022-236097522 9.99e-01 100 chrX:73943984-73944484 1.00e+00 100 chrUn_KI270467v1:3122-36 2.68e-16 [+10(1.07e-23)]_8_[-1(6.93e-05)]_21 chr17:26603652-26604152 2.64e-05 81_[-7(4.12e-07)]_3 chrUn_KI270466v1:187-687 5.20e-14 32_[+10(3.60e-20)]_25 chrUn_KI270467v1:2908-34 2.80e-21 5_[+10(1.47e-26)]_8_[-1(1.43e-06)]_\ 16 chrUn_KI270467v1:2038-25 4.46e-19 [+10(2.43e-21)]_6_[-10(4.60e-06)]_8 chr1:125179936-125180436 1.37e-08 28_[+5(5.29e-08)]_35_[+3(5.41e-09)]_\ 5 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************