******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:105244097-105244597 1.0000 100 chr7:92590089-92590589 1.0000 100 chr19:39480715-39481215 1.0000 100 chr6:28399608-28400108 1.0000 100 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chr19:38374686-38375186 1.0000 100 chr2:199955403-199955903 1.0000 100 chr12:123601738-12360223 1.0000 100 chr12:12266913-12267413 1.0000 100 chr18:32280333-32280833 1.0000 100 chr1:16644649-16645149 1.0000 100 chr20:63491062-63491562 1.0000 100 chr1:40257906-40258406 1.0000 100 chr21:25607246-25607746 1.0000 100 chr10:5663608-5664108 1.0000 100 chr11:62841301-62841801 1.0000 100 chr15:72375781-72376281 1.0000 100 chr3:12347249-12347749 1.0000 100 chr5:40835066-40835566 1.0000 100 chr15:75368272-75368772 1.0000 100 chr19:58326890-58327390 1.0000 100 chr10:93702405-93702905 1.0000 100 chr20:58650942-58651442 1.0000 100 chr6:131628017-131628517 1.0000 100 chr15:68559603-68560103 1.0000 100 chr19:41310198-41310698 1.0000 100 chr3:185498751-185499251 1.0000 100 chr1:206612142-206612642 1.0000 100 chr10:47553219-47553719 1.0000 100 chr1:1375002-1375502 1.0000 100 chr9:133417875-133418375 1.0000 100 chr1:163321634-163322134 1.0000 100 chr10:22229175-22229675 1.0000 100 chr12:68565375-68565875 1.0000 100 chr19:44259665-44260165 1.0000 100 chr17:77233768-77234268 1.0000 100 chr19:1383522-1384022 1.0000 100 chr7:142454775-142455275 1.0000 100 chr1:244970713-244971213 1.0000 100 chrX:24210175-24210675 1.0000 100 chr17:78558290-78558790 1.0000 100 chr1:6404484-6404984 1.0000 100 chr1:148522537-148523037 1.0000 100 chr1:40257706-40258206 1.0000 100 chr12:54201208-54201708 1.0000 100 chr1:236097028-236097528 1.0000 100 chr7:127707499-127707999 1.0000 100 chr19:34134473-34134973 1.0000 100 chr17:39980671-39981171 1.0000 100 chrUn_KI270466v1:230-730 1.0000 100 chr10:93209036-93209536 1.0000 100 chr17:30906037-30906537 1.0000 100 chr9:33447109-33447609 1.0000 100 chr3:15933388-15933888 1.0000 100 chr19:33320585-33321085 1.0000 100 chr1:63523057-63523557 1.0000 100 chr19:36837972-36838472 1.0000 100 chr21:26834370-26834870 1.0000 100 chr13:62642919-62643419 1.0000 100 chr15:101945846-10194634 1.0000 100 chrX:72276879-72277379 1.0000 100 chr15:65610912-65611412 1.0000 100 chr12:131487549-13148804 1.0000 100 chr7:139367700-139368200 1.0000 100 chr2:37320978-37321478 1.0000 100 chr17:49628460-49628960 1.0000 100 chr5:69415567-69416067 1.0000 100 chr6:73803389-73803889 1.0000 100 chr3:150603320-150603820 1.0000 100 chr19:35881952-35882452 1.0000 100 chr7:133298029-133298529 1.0000 100 chr7:128944788-128945288 1.0000 100 chr17:61927496-61927996 1.0000 100 chr10:102503478-10250397 1.0000 100 chr10:86867098-86867598 1.0000 100 chr12:57111954-57112454 1.0000 100 chr13:110965217-11096571 1.0000 100 chr12:106145843-10614634 1.0000 100 chr9:1004975-1005475 1.0000 100 chr8:31131476-31131976 1.0000 100 chrX:73943995-73944495 1.0000 100 chr13:51802069-51802569 1.0000 100 chrUn_KI270467v1:1949-24 1.0000 100 chr10:13375272-13375772 1.0000 100 chr13:71500064-71500564 1.0000 100 chr12:62813137-62813637 1.0000 100 chr9:653937-654437 1.0000 100 chrUn_KI270467v1:3090-35 1.0000 100 chr18:41955643-41956143 1.0000 100 chr18:25451182-25451682 1.0000 100 chr10:126259832-12626033 1.0000 100 chr1:230090040-230090540 1.0000 100 chrUn_KI270467v1:2887-33 1.0000 100 chr20:58231625-58232125 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.204 C 0.296 G 0.296 T 0.204 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.206 C 0.294 G 0.294 T 0.206 ******************************************************************************** ******************************************************************************** MOTIF AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 width = 42 sites = 52 llr = 1831 E-value = 3.8e-503 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 781a69196819681868:969196a1878197918681878 pos.-specific C 2:3:3:3:3:3:3:323:3:413:4:313:3:3:3:31412: probability G :1:::::1:::::::::2::::::::::::::::1::1:11: matrix T 116:1:6:1161:15:1:71::6:::61:16::1611:51:1 bits 2.3 2.1 * * 1.8 * * * * * * * 1.6 * * * * * * * * * * * * * Relative 1.4 * * * * * * * * * * * * * * * * * * Entropy 1.1 * * * * * * * * ***** *** * * *** * * * (50.8 bits) 0.9 ******** * *** ******* ******* *** *** *** 0.7 ************** ******************* *** *** 0.5 ****************************************** 0.2 ****************************************** 0.0 ------------------------------------------ Multilevel AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA consensus C C C C C C C C C C C C C C C C C C C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------ chr15:101945846-10194634 - 34 1.52e-29 TCAAAAGTAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAATAAAT chr1:6404484-6404984 + 25 1.52e-29 ctccgtctca aataaataaataaataaataaataaataaataaataaataaa taaataaaAG chr5:160008634-160009134 + 19 1.52e-29 ctgtctcaaa aataaataaataaataaataaataaataaataaataaataaa taaataaata chr18:48873499-48873999 - 40 1.52e-29 TCCGTCTCAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TCACAGAGAA chr19:40567075-40567575 + 25 1.52e-29 ctgtctcaaa aataaataaataaataaataaataaataaataaataaataaa taaaGTCTTA chr14:102639256-10263975 - 46 1.52e-29 TCAATAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAAATTAA chr19:37918651-37919151 + 22 1.52e-29 tcggtctcaa aataaataaataaataaataaataaataaataaataaataaa taaaCAAACT chr5:34182250-34182750 + 26 1.52e-29 gaccATCACa aataaataaataaataaataaataaataaataaataaataaa taaaaaatCT chr6:30162709-30163209 + 24 1.52e-29 CTACAGTAAa aataaataaataaataaataaataaataaataaataaataaa taaaATAGTC chr1:27181865-27182365 - 34 1.52e-29 ACTCCATCTC AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TCAATCCTTT chr9:33474197-33474697 - 34 1.52e-29 CTACTCCAAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAAATAAC chr19:32398356-32398856 + 25 1.52e-29 atcctgtctc aataaataaataaataaataaataaataaataaataaataaa taaaAGAAGT chr17:19255201-19255701 - 40 1.52e-29 AACACAAGAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAGTAAAT chr3:193970363-193970863 + 30 1.52e-29 gtataataaa aataaataaataaataaataaataaataaataaataaataaa taaaAGTGAG chr10:114649185-11464968 + 17 1.52e-29 actctgtcAa aataaataaataaataaataaataaataaataaataaataaa taaataaata chr19:35385893-35386393 - 37 1.52e-29 TGTCTCAAAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAATTAGG chr19:40103557-40104057 + 22 1.52e-29 tctgtctcaa aataaataaataaataaataaataaataaataaataaataaa taaaaagaaa chr10:35197187-35197687 - 34 1.52e-29 TCATAAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAGTAAAA chr5:138866043-138866543 - 36 1.52e-29 AAAATAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAATGAGTT chr19:43709349-43709849 - 32 1.52e-29 TAAATAACGA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA CAAAAGAATA chr6:73461333-73461833 + 3 1.52e-29 aa aataaataaataaataaataaataaataaataaataaataaa taaataaata chr19:35881952-35882452 + 18 2.98e-27 aaataaaaat aaaaaataaataaataaataaataaataaataaataaataaa Atccaagtga chr2:128227805-128228305 + 22 5.67e-27 tcagtctcaa aataaataaataaataaataaataaataaataaataaataat ataaataaat chr10:86796260-86796760 - 32 1.28e-25 CTCAAAATAC TAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TGTGCCTAAA chr11:67122383-67122883 - 57 3.75e-24 TA AATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATA AATAAAAAAT chr1:235862575-235863075 + 23 8.64e-17 tccatctcaa aacaaaCAAacacacacacacacacacacacacacacacaca cacacacacC chr5:32367212-32367712 + 35 3.03e-16 aaaataataa ataaataaataaataaagtaaataaataaataaataaataaa taactcactg chr2:27719960-27720460 - 19 3.33e-16 CCCTTCCCTG CACACACAAACACACACATACACACACACACACACACACACA CCTACAGACC chr10:72580220-72580720 - 31 9.22e-16 TCTGTCTCAA AATAAATAAATAAATAAATTAATTAATTAAATAAATAAATAA ATCAGCAAAA chr6:134052047-134052547 + 1 9.22e-16 . CATacacacacacacacacacacacacacacacacacacaca cacacacGGG chr2:169364417-169364917 - 2 2.69e-15 AGGGCACACA CACACACACACACACACACACACACACACACACACACACACA C chr6:111568239-111568739 - 11 3.21e-15 CACGTGCACG TACACACACACACACACACACACACACACACACACACACACA CACACACACA chr1:21345623-21346123 - 56 4.19e-13 GCG CACACACACACACACACACACACACACACACACACAAGCAGC TGCAGCGCCC chr1:201435696-201436196 - 16 1.07e-12 TCTCTCTCTC TTCACACACACACACACACACACACACACACACACACAGGCA CGCGCACACA chr12:57111954-57112454 + 58 2.00e-12 GCCCATTGCA ATcacaacaccacacacacacacacacacacacacacacaca c chr19:47743224-47743724 - 3 3.45e-12 GAGAGCACTT CGTGCCCGAATACACACACACACACACACACACACACACACA CA chr1:150235783-150236283 + 58 5.50e-12 cacgcacgcg cgcacacacatacacacacacatacacacacacacCCGCAGT T chrUn_KI270467v1:3090-35 - 8 3.08e-11 AAGTAGCCAA AATATATATTGTATACTGTACATAAAATATAAAATACCCCAA ATATATA chr7:127707499-127707999 - 59 6.02e-11 . CACACACACACACACACACACACACACACACACTCCTACTGG CTTGCCTTGA chr15:70097553-70098053 + 26 7.63e-11 acacacaccc aacacacacacacgcgcgcacgcacacacacacacacCAAAA AAAAAAGTGC chrUn_KI270466v1:230-730 - 48 8.59e-11 AAGTACCCAA AGTATATATTATATACTGTACATAAAATATAAAATACCCCAA ATATATATTA chrUn_KI270467v1:2887-33 - 44 1.82e-10 AAATACTCAA AATATATATTACATACTGTACATAAAATATCAAAGTACCCAA ATTATGTATT chr4:54089821-54090321 + 41 2.71e-10 aagatatctc attatatacatgcaaatgttccaaaaccataaaaaatccaaa atcttcagac chr1:28884716-28885216 + 5 5.84e-10 CCCC CCTACACATACACATACACAAATGCACAGAAACAGGAGATAC AGGATCACAA chr7:133492158-133492658 - 52 1.29e-09 ACTAAAC ACAACCAAAAGAGAACCATAAAAGCATACATAATGAAATGCT ATCTTTACCC chr7:142454775-142455275 + 10 1.43e-09 AAAGGAGCT TATAAATATTTAAAGCAGCACCCAAATGTGTTCTAATAGAAA TGCTGGGGCC chr11:62841301-62841801 + 15 2.27e-09 ACACTAGCGA TAAAAACACCTAATCCAACTCAAACAACAAGAACATAACTAT TTAGCTTGTA chr17:76671154-76671654 - 25 2.51e-09 CTGGCGCCAA GACACACACACACACACACACACACACCCTTGCTTTTCACAT TCCCTATTGT chr19:37594973-37595473 - 28 2.64e-09 CACTCGGACA CGCGCGCGCACAGACCCACACACACACGCACACACACACACA TGGCCGCAAA chr8:21491732-21492232 - 2 3.38e-09 GCCACGGACA TACACACGGACACCCACGCACCGACACACTGACATACACGCA T chrUn_KI270467v1:1949-24 - 23 6.36e-09 AAGTACACCA AATATATATTATATGCTGTACATAATATATTAAAGTTGCCCA AATATATATT chr19:36572879-36573379 + 18 8.06e-09 CTCCGTCTCT CACACACACACACCACAATGACGTCGTAAACAATAGCACTAA CCACCATCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:101945846-10194634 1.5e-29 33_[-1]_25 chr1:6404484-6404984 1.5e-29 24_[+1]_34 chr5:160008634-160009134 1.5e-29 18_[+1]_40 chr18:48873499-48873999 1.5e-29 39_[-1]_19 chr19:40567075-40567575 1.5e-29 24_[+1]_34 chr14:102639256-10263975 1.5e-29 45_[-1]_13 chr19:37918651-37919151 1.5e-29 21_[+1]_37 chr5:34182250-34182750 1.5e-29 25_[+1]_33 chr6:30162709-30163209 1.5e-29 23_[+1]_35 chr1:27181865-27182365 1.5e-29 33_[-1]_25 chr9:33474197-33474697 1.5e-29 33_[-1]_25 chr19:32398356-32398856 1.5e-29 24_[+1]_34 chr17:19255201-19255701 1.5e-29 39_[-1]_19 chr3:193970363-193970863 1.5e-29 29_[+1]_29 chr10:114649185-11464968 1.5e-29 16_[+1]_42 chr19:35385893-35386393 1.5e-29 36_[-1]_22 chr19:40103557-40104057 1.5e-29 21_[+1]_37 chr10:35197187-35197687 1.5e-29 33_[-1]_25 chr5:138866043-138866543 1.5e-29 35_[-1]_23 chr19:43709349-43709849 1.5e-29 31_[-1]_27 chr6:73461333-73461833 1.5e-29 2_[+1]_56 chr19:35881952-35882452 3e-27 17_[+1]_41 chr2:128227805-128228305 5.7e-27 21_[+1]_37 chr10:86796260-86796760 1.3e-25 31_[-1]_27 chr11:67122383-67122883 3.7e-24 56_[-1]_2 chr1:235862575-235863075 8.6e-17 22_[+1]_36 chr5:32367212-32367712 3e-16 34_[+1]_24 chr2:27719960-27720460 3.3e-16 18_[-1]_40 chr10:72580220-72580720 9.2e-16 30_[-1]_28 chr6:134052047-134052547 9.2e-16 [+1]_58 chr2:169364417-169364917 2.7e-15 1_[-1]_57 chr6:111568239-111568739 3.2e-15 10_[-1]_48 chr1:21345623-21346123 4.2e-13 55_[-1]_3 chr1:201435696-201436196 1.1e-12 15_[-1]_43 chr12:57111954-57112454 2e-12 57_[+1]_1 chr19:47743224-47743724 3.4e-12 2_[-1]_56 chr1:150235783-150236283 5.5e-12 57_[+1]_1 chrUn_KI270467v1:3090-35 3.1e-11 7_[-1]_51 chr7:127707499-127707999 6e-11 58_[-1] chr15:70097553-70098053 7.6e-11 25_[+1]_33 chrUn_KI270466v1:230-730 8.6e-11 47_[-1]_11 chrUn_KI270467v1:2887-33 1.8e-10 43_[-1]_15 chr4:54089821-54090321 2.7e-10 40_[+1]_18 chr1:28884716-28885216 5.8e-10 4_[+1]_54 chr7:133492158-133492658 1.3e-09 51_[-1]_7 chr7:142454775-142455275 1.4e-09 9_[+1]_49 chr11:62841301-62841801 2.3e-09 14_[+1]_44 chr17:76671154-76671654 2.5e-09 24_[-1]_34 chr19:37594973-37595473 2.6e-09 27_[-1]_31 chr8:21491732-21492232 3.4e-09 1_[-1]_57 chrUn_KI270467v1:1949-24 6.4e-09 22_[-1]_36 chr19:36572879-36573379 8.1e-09 17_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA width=42 seqs=52 chr15:101945846-10194634 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr1:6404484-6404984 ( 25) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:160008634-160009134 ( 19) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr18:48873499-48873999 ( 40) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:40567075-40567575 ( 25) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr14:102639256-10263975 ( 46) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:37918651-37919151 ( 22) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:34182250-34182750 ( 26) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr6:30162709-30163209 ( 24) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr1:27181865-27182365 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr9:33474197-33474697 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:32398356-32398856 ( 25) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr17:19255201-19255701 ( 40) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr3:193970363-193970863 ( 30) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr10:114649185-11464968 ( 17) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:35385893-35386393 ( 37) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:40103557-40104057 ( 22) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr10:35197187-35197687 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:138866043-138866543 ( 36) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:43709349-43709849 ( 32) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr6:73461333-73461833 ( 3) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:35881952-35882452 ( 18) AAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr2:128227805-128228305 ( 22) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAT 1 chr10:86796260-86796760 ( 32) TAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr11:67122383-67122883 ( 57) AATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATA 1 chr1:235862575-235863075 ( 23) AACAAACAAACACACACACACACACACACACACACACACACA 1 chr5:32367212-32367712 ( 35) ATAAATAAATAAATAAAGTAAATAAATAAATAAATAAATAAA 1 chr2:27719960-27720460 ( 19) CACACACAAACACACACATACACACACACACACACACACACA 1 chr10:72580220-72580720 ( 31) AATAAATAAATAAATAAATTAATTAATTAAATAAATAAATAA 1 chr6:134052047-134052547 ( 1) CATACACACACACACACACACACACACACACACACACACACA 1 chr2:169364417-169364917 ( 2) CACACACACACACACACACACACACACACACACACACACACA 1 chr6:111568239-111568739 ( 11) TACACACACACACACACACACACACACACACACACACACACA 1 chr1:21345623-21346123 ( 56) CACACACACACACACACACACACACACACACACACAAGCAGC 1 chr1:201435696-201436196 ( 16) TTCACACACACACACACACACACACACACACACACACAGGCA 1 chr12:57111954-57112454 ( 58) ATCACAACACCACACACACACACACACACACACACACACACA 1 chr19:47743224-47743724 ( 3) CGTGCCCGAATACACACACACACACACACACACACACACACA 1 chr1:150235783-150236283 ( 58) CGCACACACATACACACACACATACACACACACACCCGCAGT 1 chrUn_KI270467v1:3090-35 ( 8) AATATATATTGTATACTGTACATAAAATATAAAATACCCCAA 1 chr7:127707499-127707999 ( 59) CACACACACACACACACACACACACACACACACTCCTACTGG 1 chr15:70097553-70098053 ( 26) AACACACACACACGCGCGCACGCACACACACACACACCAAAA 1 chrUn_KI270466v1:230-730 ( 48) AGTATATATTATATACTGTACATAAAATATAAAATACCCCAA 1 chrUn_KI270467v1:2887-33 ( 44) AATATATATTACATACTGTACATAAAATATCAAAGTACCCAA 1 chr4:54089821-54090321 ( 41) ATTATATACATGCAAATGTTCCAAAACCATAAAAAATCCAAA 1 chr1:28884716-28885216 ( 5) CCTACACATACACATACACAAATGCACAGAAACAGGAGATAC 1 chr7:133492158-133492658 ( 52) ACAACCAAAAGAGAACCATAAAAGCATACATAATGAAATGCT 1 chr7:142454775-142455275 ( 10) TATAAATATTTAAAGCAGCACCCAAATGTGTTCTAATAGAAA 1 chr11:62841301-62841801 ( 15) TAAAAACACCTAATCCAACTCAAACAACAAGAACATAACTAT 1 chr17:76671154-76671654 ( 25) GACACACACACACACACACACACACACCCTTGCTTTTCACAT 1 chr19:37594973-37595473 ( 28) CGCGCGCGCACAGACCCACACACACACGCACACACACACACA 1 chr8:21491732-21492232 ( 2) TACACACGGACACCCACGCACCGACACACTGACATACACGCA 1 chrUn_KI270467v1:1949-24 ( 23) AATATATATTATATGCTGTACATAATATATTAAAGTTGCCCA 1 chr19:36572879-36573379 ( 18) CACACACACACACCACAATGACGTCGTAAACAATAGCACTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 42 n= 35400 bayes= 8.28923 E= 3.8e-503 171 -61 -393 -84 197 -293 -193 -142 -110 -13 -1234 162 222 -1234 -293 -1234 148 15 -1234 -110 216 -293 -393 -342 -184 15 -1234 158 216 -393 -235 -1234 158 -23 -393 -84 204 -293 -1234 -84 -142 -3 -293 153 213 -393 -393 -184 162 15 -293 -1234 200 -293 -393 -84 -62 7 -293 133 197 -76 -393 -1234 148 15 -1234 -110 200 -1234 -76 -1234 -1234 15 -1234 171 216 -1234 -393 -184 148 53 -1234 -1234 213 -193 -393 -1234 -184 -13 -293 162 216 -1234 -293 -242 162 31 -1234 -1234 222 -1234 -393 -342 -110 15 -1234 148 197 -235 -293 -110 166 7 -393 -342 204 -1234 -393 -62 -110 -3 -293 148 219 -1234 -393 -242 171 15 -1234 -1234 210 -393 -1234 -110 -110 -23 -193 148 200 -293 -293 -110 158 -3 -1234 -110 197 -135 -193 -1234 -110 31 -293 128 186 -161 -235 -110 175 -35 -235 -342 204 -293 -393 -110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 42 nsites= 52 E= 3.8e-503 0.673077 0.192308 0.019231 0.115385 0.807692 0.038462 0.076923 0.076923 0.096154 0.269231 0.000000 0.634615 0.961538 0.000000 0.038462 0.000000 0.576923 0.326923 0.000000 0.096154 0.923077 0.038462 0.019231 0.019231 0.057692 0.326923 0.000000 0.615385 0.923077 0.019231 0.057692 0.000000 0.615385 0.250000 0.019231 0.115385 0.846154 0.038462 0.000000 0.115385 0.076923 0.288462 0.038462 0.596154 0.903846 0.019231 0.019231 0.057692 0.634615 0.326923 0.038462 0.000000 0.826923 0.038462 0.019231 0.115385 0.134615 0.307692 0.038462 0.519231 0.807692 0.173077 0.019231 0.000000 0.576923 0.326923 0.000000 0.096154 0.826923 0.000000 0.173077 0.000000 0.000000 0.326923 0.000000 0.673077 0.923077 0.000000 0.019231 0.057692 0.576923 0.423077 0.000000 0.000000 0.903846 0.076923 0.019231 0.000000 0.057692 0.269231 0.038462 0.634615 0.923077 0.000000 0.038462 0.038462 0.634615 0.365385 0.000000 0.000000 0.961538 0.000000 0.019231 0.019231 0.096154 0.326923 0.000000 0.576923 0.807692 0.057692 0.038462 0.096154 0.653846 0.307692 0.019231 0.019231 0.846154 0.000000 0.019231 0.134615 0.096154 0.288462 0.038462 0.576923 0.942308 0.000000 0.019231 0.038462 0.673077 0.326923 0.000000 0.000000 0.884615 0.019231 0.000000 0.096154 0.096154 0.250000 0.076923 0.576923 0.826923 0.038462 0.038462 0.096154 0.615385 0.288462 0.000000 0.096154 0.807692 0.115385 0.076923 0.000000 0.096154 0.365385 0.038462 0.500000 0.750000 0.096154 0.057692 0.096154 0.692308 0.230769 0.057692 0.019231 0.846154 0.038462 0.019231 0.096154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 regular expression -------------------------------------------------------------------------------- AA[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A -------------------------------------------------------------------------------- Time 629.12 secs. ******************************************************************************** ******************************************************************************** MOTIF HDGGKBCCMAGCATTTCTAATR MEME-2 width = 22 sites = 54 llr = 839 E-value = 1.9e-113 ******************************************************************************** -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4321111147::a:::::7614 pos.-specific C 311::2873::a::::a12:22 probability G 1467341113a:::::::1113 matrix T 222163111::::aaa:91351 bits 2.3 ** * 2.1 **** 1.8 ***** 1.6 ******** Relative 1.4 ********* Entropy 1.1 ********* (22.4 bits) 0.9 ********* * 0.7 ** ** *********** 0.5 *** ** ************ 0.2 * *** **************** 0.0 ---------------------- Multilevel AGGGTGCCAAGCATTTCTAATA consensus CAA GT CG TCG sequence TT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:149357888-149358388 - 56 1.16e-12 CGAAACATTT TTGGTCCCAAGCATTTCTAATA AGGGATACTC chr10:86867098-86867598 + 32 1.66e-12 caaaacactt ctggtcccaagcatttctaata aggagtagtc chr9:653937-654437 + 67 1.30e-11 tagcccgttg tggggcccaagcatttctaata agtcctcagg chrX:96834090-96834590 + 30 2.83e-11 tgaagcagtt ctggtcccaagcatttctaaca gggataccca chr2:37320978-37321478 + 32 4.05e-10 TAATATCATC TAGTTGGCAAGCATTTCTAATA TGTTTATTTA chr9:1004975-1005475 - 49 4.75e-10 GGATTGGTTT CAGTGACCAAGCATTTCTAATG AGAACACACT chr17:27288121-27288621 - 47 5.58e-10 TGAAACACTT CTGGTCCCAAGCATTTCCAATG AGAGATATTC chr20:58231625-58232125 + 77 6.52e-10 CTTCAAGATG AGGGTTACCAGCATTTCTAAAA TA chrX:116298901-116299401 + 34 9.96e-10 TCCCATTGTT TGGGTTCCAAGCATTTCTTTTC ATCTTTTGTT chr15:30023747-30024247 - 43 1.15e-09 TTAATGTTCC AAAGTGCCAAGCATTTCTCTAA AGTGTATAAA chr1:230090040-230090540 - 7 1.32e-09 TCAACCACAG AAAGTTCCCAGCATTTCCAATC AGTTGG chr10:13375272-13375772 + 45 1.76e-09 TGAGTTAATG ACTGTTCCCAGCATTTCTCTTA ATACTCCAGG chr7:133298029-133298529 + 38 2.95e-09 AAGAGCTGTG TAAGTGCTGAGCATTTCTAATG GATTTGGGGC chr13:71500064-71500564 - 36 3.36e-09 GCACCCTGTG ATGGTGCCTAGCATTTCTCTTC ATTTTTGCTT chr10:119100383-11910088 + 63 3.82e-09 ggacttcggc agtgttcccagcatttctagaa ctgatcaaac chr18:39774906-39775406 - 31 4.90e-09 GCATGTTCTT AGGGGTCTAAGCATTTCTATGA GTTTTCATAT chr19:33320585-33321085 - 31 6.21e-09 TTTCCTGGTT TAGGCCCCCAGCATTTCTAATC TGCATTACTA chr12:111606579-11160707 - 21 7.87e-09 TCTGGCTCTG CAGAGCCCAAGCATTTCCAATG AAAAATAAAG chr17:49628460-49628960 + 57 8.86e-09 ccaaaacact ctggtcccaagcatttccgata agtggatatt chr7:42154091-42154591 + 70 8.86e-09 AGGGGCTTTG TGTGTTCCAGGCATTTTTAATG TGTCTCCAG chr18:25451182-25451682 - 65 9.95e-09 TTTGGTGTTT TGGGTTTCTAGCATTTCTATTT GATTCTTTCT chr12:68565375-68565875 - 24 1.24e-08 TCATTCTTTC CTGTTGCCCAGCATTTCTAGCA AAGTTGAAAC chr12:111591343-11159184 - 27 1.24e-08 GCCTCAATCT ATGGGGCCAAGCATTTCTCCTG TCTTAGCCTC chr7:139367700-139368200 - 30 2.14e-08 GCTCACAGCC ACTTTCCCTAGCATTTCTATCA GGCCTCTCTT chr7:341954-342454 + 47 2.14e-08 ATAGCCTCTA TAACTGCCCAGCATTTCTATTG ACTCAAGATA chr5:7875100-7875600 + 27 2.37e-08 CTTCAAGAGC TTGGAGCCCGGCATTTCTATGA CACTGGACAT chr4:19786565-19787065 + 38 2.91e-08 TGATATAGTG ATGAGACCCAGCATTTCTTTTT GATTTTGAGT chr10:46022844-46023344 + 59 3.22e-08 ATTTCTAATT CGAAAACAAGGCATTTCTAATA CGAAAGCAAC chr14:52296327-52296827 - 40 3.56e-08 GGATTTTTGG AGGGTTCCCACCATTTCTTACA TGATAAGGGT chr18:32280333-32280833 + 51 4.34e-08 TGGGATCCAC AGGGTGCCAAGCATTTCTGGAG CTCTTTTTGG chr3:12347249-12347749 + 31 5.26e-08 AGGAGTGTCC CATTGGCCCAGCATTTCTCTCA TGTTGTCTCT chr10:126259832-12626033 + 52 5.78e-08 ACCTGCCTAC AAGGGCCCCAGCATTTCTTcca tacacattac chr20:63491062-63491562 + 52 5.78e-08 GCGGCACATG AGCGTCCCTGGCATTTCTCATG GATCTACTTA chr6:5306315-5306815 - 54 5.78e-08 TACTGTTATA TCAAGGACAAGCATTTCTAATC CAAAATTCCA chr6:135604262-135604762 + 32 6.35e-08 actccctctt tgggttcccggcatttccaagc tactgggcat chr7:127707499-127707999 - 20 8.37e-08 TGAAATTTTC AAGAGCTTCAGCATTTCTAATT GTTCAAATTC chr10:77763385-77763885 + 48 8.37e-08 CTGAAACATC CCCAAGCCTAGCATTTCTAATA TAGGGCTGGA chr19:1587794-1588294 - 34 9.16e-08 TGAGCTAAGC ATGGGACCAAGCATTTCTGTGC AGTGCCTGCA chr18:46939296-46939796 + 10 9.16e-08 agtattcat cgtgtgccaggcatttccaagc actGGAATCA chrX:24210175-24210675 + 58 1.30e-07 GAATGCGATG AGTGTGGGAAGCATTTCTCTCA TGCAGGGGCT chr21:26834370-26834870 + 29 1.42e-07 TATAGTTAAT GAGGGTCAGGGCATTTCTCATG TATATCCTCC chr4:75290189-75290689 - 53 1.68e-07 GGTGGCCTGG GGAGAATCAGGCATTTCTAACA TGTAATGGCT chr10:15860751-15861251 - 37 2.14e-07 CTGCGTTGCA GCTGGTGGAAGCATTTCTAATG CACATTATGC chr10:102503478-10250397 + 76 2.32e-07 AGCACCTCAG AGGGTGCTCAGCATCTCTAAAC TTG chr10:5663608-5664108 - 31 3.43e-07 CACTAGGGTA GCAGTCCAGGGCATTTCTAAAG GGTAGAGAGT chr10:70576658-70577158 - 74 3.70e-07 AGACT CTGAAACAGGGCATTTCTAAAG GACAAACTGA chr20:44733180-44733680 - 35 3.98e-07 TTCTGTAGGT CTGGGATGGGGCATTTCTAACA AGTCTCCAGG chr12:62813137-62813637 - 34 4.29e-07 CCCGAATGAA AACTAGGAAAGCATTTCTAACG TGTCTCTTAC chr13:51802069-51802569 - 53 4.29e-07 CTTCTGAGTC AGTAGGCAGGGCATTTCCAACA GGTTTCCAGA chr6:73803389-73803889 - 6 4.97e-07 AGCTGTGTCA CAATCACCCGGCATTTCTAACT GATTT chr6:20437619-20438119 - 9 5.34e-07 TCTGCCAGAC CCTGGGCAGGGCATTTCTCTTG GACTCTGC chr4:101201293-101201793 - 24 5.34e-07 AGGGAAAATT AAAGTGCCCAGCATTTTGTATG CGTTTACTTA chr7:128944788-128945288 - 7 9.27e-07 AGGTGAGGTG AGGGTTACCAACATTTCTTTCT ACCTTT chr15:99568500-99569000 + 70 1.36e-06 TGATGGGCCT GGATTTGGGGGCATTTCTAATT TCACATATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:149357888-149358388 1.2e-12 55_[-2]_23 chr10:86867098-86867598 1.7e-12 31_[+2]_47 chr9:653937-654437 1.3e-11 66_[+2]_12 chrX:96834090-96834590 2.8e-11 29_[+2]_49 chr2:37320978-37321478 4e-10 31_[+2]_47 chr9:1004975-1005475 4.8e-10 48_[-2]_30 chr17:27288121-27288621 5.6e-10 46_[-2]_32 chr20:58231625-58232125 6.5e-10 76_[+2]_2 chrX:116298901-116299401 1e-09 33_[+2]_45 chr15:30023747-30024247 1.1e-09 42_[-2]_36 chr1:230090040-230090540 1.3e-09 6_[-2]_72 chr10:13375272-13375772 1.8e-09 44_[+2]_34 chr7:133298029-133298529 2.9e-09 37_[+2]_41 chr13:71500064-71500564 3.4e-09 35_[-2]_43 chr10:119100383-11910088 3.8e-09 62_[+2]_16 chr18:39774906-39775406 4.9e-09 30_[-2]_48 chr19:33320585-33321085 6.2e-09 30_[-2]_48 chr12:111606579-11160707 7.9e-09 20_[-2]_58 chr17:49628460-49628960 8.9e-09 56_[+2]_22 chr7:42154091-42154591 8.9e-09 69_[+2]_9 chr18:25451182-25451682 9.9e-09 64_[-2]_14 chr12:68565375-68565875 1.2e-08 23_[-2]_55 chr12:111591343-11159184 1.2e-08 26_[-2]_52 chr7:139367700-139368200 2.1e-08 29_[-2]_49 chr7:341954-342454 2.1e-08 46_[+2]_32 chr5:7875100-7875600 2.4e-08 26_[+2]_52 chr4:19786565-19787065 2.9e-08 37_[+2]_41 chr10:46022844-46023344 3.2e-08 58_[+2]_20 chr14:52296327-52296827 3.6e-08 39_[-2]_39 chr18:32280333-32280833 4.3e-08 50_[+2]_28 chr3:12347249-12347749 5.3e-08 30_[+2]_48 chr10:126259832-12626033 5.8e-08 51_[+2]_27 chr20:63491062-63491562 5.8e-08 51_[+2]_27 chr6:5306315-5306815 5.8e-08 53_[-2]_25 chr6:135604262-135604762 6.3e-08 31_[+2]_47 chr7:127707499-127707999 8.4e-08 19_[-2]_59 chr10:77763385-77763885 8.4e-08 47_[+2]_31 chr19:1587794-1588294 9.2e-08 33_[-2]_45 chr18:46939296-46939796 9.2e-08 9_[+2]_69 chrX:24210175-24210675 1.3e-07 57_[+2]_21 chr21:26834370-26834870 1.4e-07 28_[+2]_50 chr4:75290189-75290689 1.7e-07 52_[-2]_26 chr10:15860751-15861251 2.1e-07 36_[-2]_42 chr10:102503478-10250397 2.3e-07 75_[+2]_3 chr10:5663608-5664108 3.4e-07 30_[-2]_48 chr10:70576658-70577158 3.7e-07 73_[-2]_5 chr20:44733180-44733680 4e-07 34_[-2]_44 chr12:62813137-62813637 4.3e-07 33_[-2]_45 chr13:51802069-51802569 4.3e-07 52_[-2]_26 chr6:73803389-73803889 5e-07 5_[-2]_73 chr6:20437619-20438119 5.3e-07 8_[-2]_70 chr4:101201293-101201793 5.3e-07 23_[-2]_55 chr7:128944788-128945288 9.3e-07 6_[-2]_72 chr15:99568500-99569000 1.4e-06 69_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HDGGKBCCMAGCATTTCTAATR width=22 seqs=54 chr6:149357888-149358388 ( 56) TTGGTCCCAAGCATTTCTAATA 1 chr10:86867098-86867598 ( 32) CTGGTCCCAAGCATTTCTAATA 1 chr9:653937-654437 ( 67) TGGGGCCCAAGCATTTCTAATA 1 chrX:96834090-96834590 ( 30) CTGGTCCCAAGCATTTCTAACA 1 chr2:37320978-37321478 ( 32) TAGTTGGCAAGCATTTCTAATA 1 chr9:1004975-1005475 ( 49) CAGTGACCAAGCATTTCTAATG 1 chr17:27288121-27288621 ( 47) CTGGTCCCAAGCATTTCCAATG 1 chr20:58231625-58232125 ( 77) AGGGTTACCAGCATTTCTAAAA 1 chrX:116298901-116299401 ( 34) TGGGTTCCAAGCATTTCTTTTC 1 chr15:30023747-30024247 ( 43) AAAGTGCCAAGCATTTCTCTAA 1 chr1:230090040-230090540 ( 7) AAAGTTCCCAGCATTTCCAATC 1 chr10:13375272-13375772 ( 45) ACTGTTCCCAGCATTTCTCTTA 1 chr7:133298029-133298529 ( 38) TAAGTGCTGAGCATTTCTAATG 1 chr13:71500064-71500564 ( 36) ATGGTGCCTAGCATTTCTCTTC 1 chr10:119100383-11910088 ( 63) AGTGTTCCCAGCATTTCTAGAA 1 chr18:39774906-39775406 ( 31) AGGGGTCTAAGCATTTCTATGA 1 chr19:33320585-33321085 ( 31) TAGGCCCCCAGCATTTCTAATC 1 chr12:111606579-11160707 ( 21) CAGAGCCCAAGCATTTCCAATG 1 chr17:49628460-49628960 ( 57) CTGGTCCCAAGCATTTCCGATA 1 chr7:42154091-42154591 ( 70) TGTGTTCCAGGCATTTTTAATG 1 chr18:25451182-25451682 ( 65) TGGGTTTCTAGCATTTCTATTT 1 chr12:68565375-68565875 ( 24) CTGTTGCCCAGCATTTCTAGCA 1 chr12:111591343-11159184 ( 27) ATGGGGCCAAGCATTTCTCCTG 1 chr7:139367700-139368200 ( 30) ACTTTCCCTAGCATTTCTATCA 1 chr7:341954-342454 ( 47) TAACTGCCCAGCATTTCTATTG 1 chr5:7875100-7875600 ( 27) TTGGAGCCCGGCATTTCTATGA 1 chr4:19786565-19787065 ( 38) ATGAGACCCAGCATTTCTTTTT 1 chr10:46022844-46023344 ( 59) CGAAAACAAGGCATTTCTAATA 1 chr14:52296327-52296827 ( 40) AGGGTTCCCACCATTTCTTACA 1 chr18:32280333-32280833 ( 51) AGGGTGCCAAGCATTTCTGGAG 1 chr3:12347249-12347749 ( 31) CATTGGCCCAGCATTTCTCTCA 1 chr10:126259832-12626033 ( 52) AAGGGCCCCAGCATTTCTTCCA 1 chr20:63491062-63491562 ( 52) AGCGTCCCTGGCATTTCTCATG 1 chr6:5306315-5306815 ( 54) TCAAGGACAAGCATTTCTAATC 1 chr6:135604262-135604762 ( 32) TGGGTTCCCGGCATTTCCAAGC 1 chr7:127707499-127707999 ( 20) AAGAGCTTCAGCATTTCTAATT 1 chr10:77763385-77763885 ( 48) CCCAAGCCTAGCATTTCTAATA 1 chr19:1587794-1588294 ( 34) ATGGGACCAAGCATTTCTGTGC 1 chr18:46939296-46939796 ( 10) CGTGTGCCAGGCATTTCCAAGC 1 chrX:24210175-24210675 ( 58) AGTGTGGGAAGCATTTCTCTCA 1 chr21:26834370-26834870 ( 29) GAGGGTCAGGGCATTTCTCATG 1 chr4:75290189-75290689 ( 53) GGAGAATCAGGCATTTCTAACA 1 chr10:15860751-15861251 ( 37) GCTGGTGGAAGCATTTCTAATG 1 chr10:102503478-10250397 ( 76) AGGGTGCTCAGCATCTCTAAAC 1 chr10:5663608-5664108 ( 31) GCAGTCCAGGGCATTTCTAAAG 1 chr10:70576658-70577158 ( 74) CTGAAACAGGGCATTTCTAAAG 1 chr20:44733180-44733680 ( 35) CTGGGATGGGGCATTTCTAACA 1 chr12:62813137-62813637 ( 34) AACTAGGAAAGCATTTCTAACG 1 chr13:51802069-51802569 ( 53) AGTAGGCAGGGCATTTCCAACA 1 chr6:73803389-73803889 ( 6) CAATCACCCGGCATTTCTAACT 1 chr6:20437619-20438119 ( 9) CCTGGGCAGGGCATTTCTCTTG 1 chr4:101201293-101201793 ( 24) AAAGTGCCCAGCATTTTGTATG 1 chr7:128944788-128945288 ( 7) AGGGTTACCAACATTTCTTTCT 1 chr15:99568500-99569000 ( 70) GGATTTGGGGGCATTTCTAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.3456 E= 1.9e-113 98 -8 -167 11 43 -118 26 22 -2 -240 92 -16 -48 -398 122 -48 -89 -299 1 143 -48 -29 26 33 -189 140 -167 -148 -67 130 -199 -148 105 18 -99 -115 181 -1240 -8 -1240 -347 -398 171 -1240 -1240 177 -1240 -1240 228 -1240 -1240 -1240 -1240 -1240 -1240 228 -1240 -398 -1240 225 -1240 -1240 -1240 228 -1240 171 -1240 -248 -1240 -118 -398 205 169 -82 -240 -89 161 -299 -240 43 -67 -29 -167 138 105 -82 1 -89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 54 E= 1.9e-113 0.407407 0.277778 0.092593 0.222222 0.277778 0.129630 0.351852 0.240741 0.203704 0.055556 0.555556 0.185185 0.148148 0.018519 0.685185 0.148148 0.111111 0.037037 0.296296 0.555556 0.148148 0.240741 0.351852 0.259259 0.055556 0.777778 0.092593 0.074074 0.129630 0.722222 0.074074 0.074074 0.425926 0.333333 0.148148 0.092593 0.722222 0.000000 0.277778 0.000000 0.018519 0.018519 0.962963 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.018519 0.000000 0.981481 0.000000 0.000000 0.000000 1.000000 0.000000 0.962963 0.000000 0.037037 0.000000 0.129630 0.018519 0.851852 0.666667 0.166667 0.055556 0.111111 0.629630 0.037037 0.055556 0.277778 0.129630 0.240741 0.092593 0.537037 0.425926 0.166667 0.296296 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 regular expression -------------------------------------------------------------------------------- [ACT][GAT][GA]G[TG][GTC]CC[AC][AG]GCATTTCTA[AT][TC][AG] -------------------------------------------------------------------------------- Time 1191.82 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATAAATWAWWWRAW MEME-3 width = 16 sites = 40 llr = 480 E-value = 5.2e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A a76:a79257446675 pos.-specific C :2:::1::1111::22 probability G ::32::121:12:31: matrix T :218:2:6434341:3 bits 2.3 * * 2.1 * * 1.8 * * * 1.6 * * * Relative 1.4 * ** * * Entropy 1.1 * ** * * * (17.3 bits) 0.9 ******** * * * 0.7 ********** *** 0.5 *********** **** 0.2 **************** 0.0 ---------------- Multilevel AAATAAATAATAAAAA consensus TGG T ATTATTGCT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr6:73461333-73461833 + 50 8.41e-11 ataaataaat aaataaataaataaaa ataaaaaata chr15:101945846-10194634 - 16 3.24e-10 TAAATAAATA AAATAAATTATTTAAA AATCGGCAGA chr6:79078218-79078718 - 36 3.24e-10 CTCCGACTGG AAATAAATAAATAAAT CGCACGCCCT chr2:128227805-128228305 + 66 3.24e-10 taaataatat aaataaataaataaat aaaGTTTAGT chr19:35881952-35882452 + 2 6.85e-09 a aaataaaaataaaaat aaaaaataaa chrUn_KI270467v1:3090-35 - 77 3.79e-08 AGTACCCA AAATATATATTGTAAA CTGTACATAA chr8:124200495-124200995 - 10 8.69e-08 AAAAGAATGG AAATATATTTAATTAA CATTACTGA chr17:7484261-7484761 - 67 2.64e-07 AGCTCCCAAA AAGGAAAAAAAAAGAA GGGAAAAGGA chrUn_KI270467v1:1949-24 - 6 2.91e-07 AGTTGCCCAA ATATATATTATATACT GTACA chr14:99821635-99822135 - 9 2.91e-07 TTAGCCACAG AAGTACATTATAAAAC CGACATAT chr19:40103557-40104057 + 67 3.28e-07 aaataaataa aaagaaagaaactaaa aatttcaact chr10:35197187-35197687 - 6 3.28e-07 AAGTAAAATG AAATAAAATTTATTAC TCATT chr14:102639256-10263975 - 19 3.69e-07 AAAAATTAAA AAATAAATTAATTAGC CAGACATGCT chr6:150418256-150418756 - 9 5.64e-07 GATCTGGAAG ACATAAATTACTAACA CGTAGAAA chr12:131487549-13148804 + 43 6.27e-07 GACATTCTCG ATAGAAAATAAAAACA CTTCAGCAGA chr1:81126952-81127452 + 70 7.70e-07 AAGGATTAGA AAGTAAATGAAGTGAA CAACCACGAA chr17:19255201-19255701 - 22 7.70e-07 TAAATAAATA AAGTAAATGAAGAAAC TCAAGCAATA chr18:25451182-25451682 + 43 8.52e-07 aagcagggag atggaaatattaagaa agaatcaaat chrUn_KI270466v1:230-730 - 32 8.52e-07 AATACCCCAA ATATATATTATATGCT GTACATAAAA chr5:160008634-160009134 + 62 8.52e-07 ataaataaat aaataaataGTGAAAC GAACACCACA chr18:39774906-39775406 + 15 1.15e-06 GTCCTTTTTC AAAGAAATATGAAAAC TCATAGAAAT chr9:33474197-33474697 - 15 1.68e-06 AAATAAATAA AAATAACTAAATTACT TGAAATTGTA chr3:193970363-193970863 + 13 1.68e-06 gtaccctaga acttaaagtataataa aaataaataa chrX:116298901-116299401 - 7 2.21e-06 ACAATGGGAG AAGTAGATAATGAGAA GTGGAA chr10:86796260-86796760 + 6 2.63e-06 ATCAG AATTATATCACATAAA TTTAGGCACa chr11:86241905-86242405 + 16 2.88e-06 GCATAGAATT ACATAAATTTAGAGCT GCCTGGGTCC chr17:28823503-28824003 - 46 2.88e-06 CTGAGCTGAA ATAGATAGAATTTGAA GTCATGGTAT chr7:133492158-133492658 + 1 2.88e-06 . AAATATAAAAAGAGGA GTAGTTTTTA chr17:26603646-26604146 + 51 3.72e-06 aatcatcttc acataaaaactataca gatgcattct chr10:86867098-86867598 + 4 4.04e-06 caa atttaaaaatccaaaa tccaaaacac chr1:41870102-41870602 + 70 4.37e-06 tcaacgttgc aattaaataatcacac acacaatact chr8:21491732-21492232 - 75 5.16e-06 TACCCGAAGA AAATAAAACACATGCA GCTATGAAAG chrUn_KI270467v1:2887-33 + 21 5.57e-06 ctgataattt acgtacagtatataat acataatttg chr3:15933388-15933888 + 24 6.05e-06 CCTGTGCACT AATGATAATTTAAGAT GATGGTGTCC chr15:66883319-66883819 + 79 7.05e-06 TGGCAAAACC ACGGAAAGTATTTGAA ACACGC chr6:5306315-5306815 - 4 7.05e-06 GCCCTCTGAA ATGTAAATACTCATAA ATT chr19:43709349-43709849 - 75 7.62e-06 TAAAACTACA AAATAAGTAAATAACG AAATAAATAA chr10:114649185-11464968 + 64 1.47e-05 ataaataaat aaataaaggtgttgat atcaaaggtt chr17:49628460-49628960 + 1 1.68e-05 . aagtacgtaacaaaac tattccaaaa chr17:27288121-27288621 + 14 1.93e-05 TGGAGGATGC ATATACAGTTACATAT Acaggttgaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:73461333-73461833 8.4e-11 49_[+3]_35 chr15:101945846-10194634 3.2e-10 15_[-3]_69 chr6:79078218-79078718 3.2e-10 35_[-3]_49 chr2:128227805-128228305 3.2e-10 65_[+3]_19 chr19:35881952-35882452 6.8e-09 1_[+3]_83 chrUn_KI270467v1:3090-35 3.8e-08 76_[-3]_8 chr8:124200495-124200995 8.7e-08 9_[-3]_75 chr17:7484261-7484761 2.6e-07 66_[-3]_18 chrUn_KI270467v1:1949-24 2.9e-07 5_[-3]_79 chr14:99821635-99822135 2.9e-07 8_[-3]_76 chr19:40103557-40104057 3.3e-07 66_[+3]_18 chr10:35197187-35197687 3.3e-07 5_[-3]_79 chr14:102639256-10263975 3.7e-07 18_[-3]_66 chr6:150418256-150418756 5.6e-07 8_[-3]_76 chr12:131487549-13148804 6.3e-07 42_[+3]_42 chr1:81126952-81127452 7.7e-07 69_[+3]_15 chr17:19255201-19255701 7.7e-07 21_[-3]_63 chr18:25451182-25451682 8.5e-07 42_[+3]_42 chrUn_KI270466v1:230-730 8.5e-07 31_[-3]_53 chr5:160008634-160009134 8.5e-07 61_[+3]_23 chr18:39774906-39775406 1.1e-06 14_[+3]_70 chr9:33474197-33474697 1.7e-06 14_[-3]_70 chr3:193970363-193970863 1.7e-06 12_[+3]_72 chrX:116298901-116299401 2.2e-06 6_[-3]_78 chr10:86796260-86796760 2.6e-06 5_[+3]_79 chr11:86241905-86242405 2.9e-06 15_[+3]_69 chr17:28823503-28824003 2.9e-06 45_[-3]_39 chr7:133492158-133492658 2.9e-06 [+3]_84 chr17:26603646-26604146 3.7e-06 50_[+3]_34 chr10:86867098-86867598 4e-06 3_[+3]_81 chr1:41870102-41870602 4.4e-06 69_[+3]_15 chr8:21491732-21492232 5.2e-06 74_[-3]_10 chrUn_KI270467v1:2887-33 5.6e-06 20_[+3]_64 chr3:15933388-15933888 6e-06 23_[+3]_61 chr15:66883319-66883819 7.1e-06 78_[+3]_6 chr6:5306315-5306815 7.1e-06 3_[-3]_81 chr19:43709349-43709849 7.6e-06 74_[-3]_10 chr10:114649185-11464968 1.5e-05 63_[+3]_21 chr17:49628460-49628960 1.7e-05 [+3]_84 chr17:27288121-27288621 1.9e-05 13_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATAAATWAWWWRAW width=16 seqs=40 chr6:73461333-73461833 ( 50) AAATAAATAAATAAAA 1 chr15:101945846-10194634 ( 16) AAATAAATTATTTAAA 1 chr6:79078218-79078718 ( 36) AAATAAATAAATAAAT 1 chr2:128227805-128228305 ( 66) AAATAAATAAATAAAT 1 chr19:35881952-35882452 ( 2) AAATAAAAATAAAAAT 1 chrUn_KI270467v1:3090-35 ( 77) AAATATATATTGTAAA 1 chr8:124200495-124200995 ( 10) AAATATATTTAATTAA 1 chr17:7484261-7484761 ( 67) AAGGAAAAAAAAAGAA 1 chrUn_KI270467v1:1949-24 ( 6) ATATATATTATATACT 1 chr14:99821635-99822135 ( 9) AAGTACATTATAAAAC 1 chr19:40103557-40104057 ( 67) AAAGAAAGAAACTAAA 1 chr10:35197187-35197687 ( 6) AAATAAAATTTATTAC 1 chr14:102639256-10263975 ( 19) AAATAAATTAATTAGC 1 chr6:150418256-150418756 ( 9) ACATAAATTACTAACA 1 chr12:131487549-13148804 ( 43) ATAGAAAATAAAAACA 1 chr1:81126952-81127452 ( 70) AAGTAAATGAAGTGAA 1 chr17:19255201-19255701 ( 22) AAGTAAATGAAGAAAC 1 chr18:25451182-25451682 ( 43) ATGGAAATATTAAGAA 1 chrUn_KI270466v1:230-730 ( 32) ATATATATTATATGCT 1 chr5:160008634-160009134 ( 62) AAATAAATAGTGAAAC 1 chr18:39774906-39775406 ( 15) AAAGAAATATGAAAAC 1 chr9:33474197-33474697 ( 15) AAATAACTAAATTACT 1 chr3:193970363-193970863 ( 13) ACTTAAAGTATAATAA 1 chrX:116298901-116299401 ( 7) AAGTAGATAATGAGAA 1 chr10:86796260-86796760 ( 6) AATTATATCACATAAA 1 chr11:86241905-86242405 ( 16) ACATAAATTTAGAGCT 1 chr17:28823503-28824003 ( 46) ATAGATAGAATTTGAA 1 chr7:133492158-133492658 ( 1) AAATATAAAAAGAGGA 1 chr17:26603646-26604146 ( 51) ACATAAAAACTATACA 1 chr10:86867098-86867598 ( 4) ATTTAAAAATCCAAAA 1 chr1:41870102-41870602 ( 70) AATTAAATAATCACAC 1 chr8:21491732-21492232 ( 75) AAATAAAACACATGCA 1 chrUn_KI270467v1:2887-33 ( 21) ACGTACAGTATATAAT 1 chr3:15933388-15933888 ( 24) AATGATAATTTAAGAT 1 chr15:66883319-66883819 ( 79) ACGGAAAGTATTTGAA 1 chr6:5306315-5306815 ( 4) ATGTAAATACTCATAA 1 chr19:43709349-43709849 ( 75) AAATAAGTAAATAACG 1 chr10:114649185-11464968 ( 64) AAATAAAGGTGTTGAT 1 chr17:49628460-49628960 ( 1) AAGTACGTAACAAAAC 1 chr17:27288121-27288621 ( 14) ATATACAGTTACATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.1525 E= 5.2e-019 228 -1197 -1197 -1197 166 -97 -1197 -4 160 -1197 -23 -72 -1197 -1197 -55 196 228 -1197 -1197 -1197 171 -155 -355 -4 217 -355 -255 -1197 13 -1197 -75 154 128 -255 -197 86 166 -255 -355 42 96 -123 -255 104 104 -123 -75 42 148 -1197 -1197 104 142 -355 3 -72 181 -38 -255 -1197 128 -55 -355 42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 40 E= 5.2e-019 1.000000 0.000000 0.000000 0.000000 0.650000 0.150000 0.000000 0.200000 0.625000 0.000000 0.250000 0.125000 0.000000 0.000000 0.200000 0.800000 1.000000 0.000000 0.000000 0.000000 0.675000 0.100000 0.025000 0.200000 0.925000 0.025000 0.050000 0.000000 0.225000 0.000000 0.175000 0.600000 0.500000 0.050000 0.075000 0.375000 0.650000 0.050000 0.025000 0.275000 0.400000 0.125000 0.050000 0.425000 0.425000 0.125000 0.175000 0.275000 0.575000 0.000000 0.000000 0.425000 0.550000 0.025000 0.300000 0.125000 0.725000 0.225000 0.050000 0.000000 0.500000 0.200000 0.025000 0.275000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 regular expression -------------------------------------------------------------------------------- A[AT][AG][TG]A[AT]A[TA][AT][AT][TA][AT][AT][AG][AC][ATC] -------------------------------------------------------------------------------- Time 1727.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:105244097-105244597 3.88e-01 100 chr7:92590089-92590589 9.96e-01 100 chr19:39480715-39481215 9.99e-01 100 chr6:28399608-28400108 1.98e-01 100 chr7:149753545-149754045 8.93e-01 100 chr11:119095019-11909551 1.00e+00 100 chr8:89984200-89984700 9.99e-01 100 chr6:150418256-150418756 1.25e-04 8_[-3(5.64e-07)]_76 chr1:44213144-44213644 8.74e-01 100 chr15:49620772-49621272 7.88e-01 100 chr7:103344498-103344998 2.26e-01 100 chr5:112707694-112708194 8.99e-01 100 chr6:10403543-10404043 2.04e-01 100 chr22:20981905-20982405 6.96e-01 100 chr14:52296327-52296827 4.96e-06 39_[-2(3.56e-08)]_39 chr22:19432263-19432763 1.00e+00 100 chr18:50878493-50878993 9.96e-01 100 chr1:23691667-23692167 7.12e-01 100 chr8:21491732-21492232 7.73e-08 1_[-1(3.38e-09)]_31_[-3(5.16e-06)]_\ 10 chr1:121519147-121519647 1.00e+00 100 chr1:236064843-236065343 8.46e-01 100 chr12:53501157-53501657 7.72e-01 100 chr18:3297288-3297788 9.13e-01 100 chr2:128227805-128228305 1.64e-29 21_[+1(5.67e-27)]_2_[+3(3.24e-10)]_\ 19 chr8:6648816-6649316 6.45e-01 100 chr6:100880991-100881491 6.85e-01 100 chr1:150487000-150487500 2.11e-01 100 chr19:42302215-42302715 9.99e-01 100 chr3:182212283-182212783 7.21e-03 100 chr1:109484050-109484550 9.44e-01 100 chr17:40123453-40123953 7.82e-02 100 chr9:135967493-135967993 6.84e-01 100 chr7:106009421-106009921 2.35e-01 100 chr12:56158249-56158749 8.32e-01 100 chr20:36236198-36236698 9.19e-01 100 chr1:227563430-227563930 1.25e-01 100 chr22:30362544-30363044 7.14e-02 63_[-2(4.32e-05)]_15 chr15:64387563-64388063 3.54e-01 100 chr10:7788129-7788629 9.97e-01 100 chr13:48037713-48038213 9.98e-01 100 chr15:67792365-67792865 4.56e-05 23_[-2(2.69e-05)]_1_[+3(3.41e-05)]_\ 38 chr3:158644330-158644830 1.00e+00 100 chr1:53220314-53220814 8.84e-01 100 chr11:67122383-67122883 5.00e-27 56_[-1(3.75e-24)]_2 chr7:99465825-99466325 9.42e-01 100 chr1:151070421-151070921 4.27e-04 34_[-3(5.13e-05)]_50 chr17:74203532-74204032 9.98e-01 100 chr7:133492158-133492658 1.54e-09 [+3(2.88e-06)]_35_[-1(1.29e-09)]_7 chr1:179293658-179294158 7.30e-01 100 chr1:223707175-223707675 3.13e-03 45_[-3(6.40e-05)]_39 chr6:73461333-73461833 2.87e-32 2_[+1(1.52e-29)]_2_[+1(1.06e-11)]_\ 12 chr7:139359199-139359699 8.99e-01 100 chr18:46939296-46939796 1.45e-04 9_[+2(9.16e-08)]_69 chr15:72155929-72156429 1.22e-01 100 chr1:28884716-28885216 1.00e-07 4_[+1(5.84e-10)]_54 chr10:84139432-84139932 9.93e-01 100 chr20:63628219-63628719 1.85e-01 100 chr5:36690297-36690797 7.03e-01 100 chr20:63657983-63658483 4.57e-01 100 chr1:229626159-229626659 7.85e-01 100 chr5:134371035-134371535 3.92e-01 100 chr3:33798546-33799046 9.98e-01 100 chr12:103965720-10396622 9.99e-01 100 chr17:18780992-18781492 1.00e+00 100 chr5:134411686-134412186 9.99e-01 100 chr1:231420966-231421466 1.00e+00 100 chr14:99821635-99822135 2.20e-04 8_[-3(2.91e-07)]_76 chr19:10416378-10416878 9.85e-01 100 chr9:128322352-128322852 7.03e-01 100 chr21:43728535-43729035 9.76e-01 100 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chr19:34134473-34134973 1.00e+00 100 chr17:39980671-39981171 9.99e-01 100 chrUn_KI270466v1:230-730 1.96e-11 13_[-3(5.16e-06)]_2_[-3(8.52e-07)]_\ [-1(8.59e-11)]_11 chr10:93209036-93209536 1.26e-01 100 chr17:30906037-30906537 6.57e-01 100 chr9:33447109-33447609 9.64e-01 100 chr3:15933388-15933888 4.32e-04 23_[+3(6.05e-06)]_61 chr19:33320585-33321085 7.03e-06 6_[-2(3.36e-05)]_2_[-2(6.21e-09)]_\ 48 chr1:63523057-63523557 5.64e-01 100 chr19:36837972-36838472 6.34e-02 100 chr21:26834370-26834870 2.76e-06 28_[+2(1.42e-07)]_50 chr13:62642919-62643419 3.73e-01 100 chr15:101945846-10194634 3.17e-32 29_[-1(1.52e-29)]_29 chrX:72276879-72277379 6.67e-01 100 chr15:65610912-65611412 1.46e-01 14_[-3(6.40e-05)]_1_[-3(6.40e-05)]_\ 53 chr12:131487549-13148804 1.15e-05 42_[+3(6.27e-07)]_42 chr7:139367700-139368200 9.62e-05 29_[-2(2.14e-08)]_49 chr2:37320978-37321478 1.42e-08 31_[+2(4.05e-10)]_47 chr17:49628460-49628960 1.39e-08 [+3(1.68e-05)]_40_[+2(8.86e-09)]_22 chr5:69415567-69416067 6.39e-02 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chr12:62813137-62813637 4.34e-04 33_[-2(4.29e-07)]_45 chr9:653937-654437 5.19e-08 66_[+2(1.30e-11)]_12 chrUn_KI270467v1:3090-35 5.59e-12 7_[-1(3.08e-11)]_[-1(6.02e-11)]_9 chr18:41955643-41956143 2.46e-01 100 chr18:25451182-25451682 2.43e-11 42_[+3(8.52e-07)]_6_[-2(9.95e-09)]_\ 14 chr10:126259832-12626033 3.13e-05 51_[+2(5.78e-08)]_27 chr1:230090040-230090540 3.27e-06 6_[-2(1.32e-09)]_72 chrUn_KI270467v1:2887-33 1.48e-09 1_[-1(4.68e-07)]_[-1(1.82e-10)]_15 chr20:58231625-58232125 5.97e-07 76_[+2(6.52e-10)]_2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: wotan ********************************************************************************