******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:105244097-105244597 1.0000 100 chr7:92590089-92590589 1.0000 100 chr19:39480715-39481215 1.0000 100 chr6:28399608-28400108 1.0000 100 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chr19:38374686-38375186 1.0000 100 chr2:199955403-199955903 1.0000 100 chr12:123601738-12360223 1.0000 100 chr12:12266913-12267413 1.0000 100 chr18:32280333-32280833 1.0000 100 chr1:16644649-16645149 1.0000 100 chr20:63491062-63491562 1.0000 100 chr1:40257906-40258406 1.0000 100 chr21:25607246-25607746 1.0000 100 chr10:5663608-5664108 1.0000 100 chr11:62841301-62841801 1.0000 100 chr15:72375781-72376281 1.0000 100 chr3:12347249-12347749 1.0000 100 chr5:40835066-40835566 1.0000 100 chr15:75368272-75368772 1.0000 100 chr19:58326890-58327390 1.0000 100 chr10:93702405-93702905 1.0000 100 chr20:58650942-58651442 1.0000 100 chr6:131628017-131628517 1.0000 100 chr15:68559603-68560103 1.0000 100 chr19:41310198-41310698 1.0000 100 chr3:185498751-185499251 1.0000 100 chr1:206612142-206612642 1.0000 100 chr10:47553219-47553719 1.0000 100 chr1:1375002-1375502 1.0000 100 chr9:133417875-133418375 1.0000 100 chr1:163321634-163322134 1.0000 100 chr10:22229175-22229675 1.0000 100 chr12:68565375-68565875 1.0000 100 chr19:44259665-44260165 1.0000 100 chr17:77233768-77234268 1.0000 100 chr19:1383522-1384022 1.0000 100 chr7:142454775-142455275 1.0000 100 chr1:244970713-244971213 1.0000 100 chrX:24210175-24210675 1.0000 100 chr17:78558290-78558790 1.0000 100 chr1:6404484-6404984 1.0000 100 chr1:148522537-148523037 1.0000 100 chr1:40257706-40258206 1.0000 100 chr12:54201208-54201708 1.0000 100 chr1:236097028-236097528 1.0000 100 chr7:127707499-127707999 1.0000 100 chr19:34134473-34134973 1.0000 100 chr17:39980671-39981171 1.0000 100 chrUn_KI270466v1:230-730 1.0000 100 chr10:93209036-93209536 1.0000 100 chr17:30906037-30906537 1.0000 100 chr9:33447109-33447609 1.0000 100 chr3:15933388-15933888 1.0000 100 chr19:33320585-33321085 1.0000 100 chr1:63523057-63523557 1.0000 100 chr19:36837972-36838472 1.0000 100 chr21:26834370-26834870 1.0000 100 chr13:62642919-62643419 1.0000 100 chr15:101945846-10194634 1.0000 100 chrX:72276879-72277379 1.0000 100 chr15:65610912-65611412 1.0000 100 chr12:131487549-13148804 1.0000 100 chr7:139367700-139368200 1.0000 100 chr2:37320978-37321478 1.0000 100 chr17:49628460-49628960 1.0000 100 chr5:69415567-69416067 1.0000 100 chr6:73803389-73803889 1.0000 100 chr3:150603320-150603820 1.0000 100 chr19:35881952-35882452 1.0000 100 chr7:133298029-133298529 1.0000 100 chr7:128944788-128945288 1.0000 100 chr17:61927496-61927996 1.0000 100 chr10:102503478-10250397 1.0000 100 chr10:86867098-86867598 1.0000 100 chr12:57111954-57112454 1.0000 100 chr13:110965217-11096571 1.0000 100 chr12:106145843-10614634 1.0000 100 chr9:1004975-1005475 1.0000 100 chr8:31131476-31131976 1.0000 100 chrX:73943995-73944495 1.0000 100 chr13:51802069-51802569 1.0000 100 chrUn_KI270467v1:1949-24 1.0000 100 chr10:13375272-13375772 1.0000 100 chr13:71500064-71500564 1.0000 100 chr12:62813137-62813637 1.0000 100 chr9:653937-654437 1.0000 100 chrUn_KI270467v1:3090-35 1.0000 100 chr18:41955643-41956143 1.0000 100 chr18:25451182-25451682 1.0000 100 chr10:126259832-12626033 1.0000 100 chr1:230090040-230090540 1.0000 100 chrUn_KI270467v1:2887-33 1.0000 100 chr20:58231625-58232125 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.204 C 0.296 G 0.296 T 0.204 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.206 C 0.294 G 0.294 T 0.206 ******************************************************************************** ******************************************************************************** MOTIF AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 width = 42 sites = 52 llr = 1831 E-value = 3.8e-503 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 781a69196819681868:969196a1878197918681878 pos.-specific C 2:3:3:3:3:3:3:323:3:413:4:313:3:3:3:31412: probability G :1:::::1:::::::::2::::::::::::::::1::1:11: matrix T 116:1:6:1161:15:1:71::6:::61:16::1611:51:1 bits 2.3 2.1 * * 1.8 * * * * * * * 1.6 * * * * * * * * * * * * * Relative 1.4 * * * * * * * * * * * * * * * * * * Entropy 1.1 * * * * * * * * ***** *** * * *** * * * (50.8 bits) 0.9 ******** * *** ******* ******* *** *** *** 0.7 ************** ******************* *** *** 0.5 ****************************************** 0.2 ****************************************** 0.0 ------------------------------------------ Multilevel AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA consensus C C C C C C C C C C C C C C C C C C C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------ chr15:101945846-10194634 - 34 1.52e-29 TCAAAAGTAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAATAAAT chr1:6404484-6404984 + 25 1.52e-29 ctccgtctca aataaataaataaataaataaataaataaataaataaataaa taaataaaAG chr5:160008634-160009134 + 19 1.52e-29 ctgtctcaaa aataaataaataaataaataaataaataaataaataaataaa taaataaata chr18:48873499-48873999 - 40 1.52e-29 TCCGTCTCAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TCACAGAGAA chr19:40567075-40567575 + 25 1.52e-29 ctgtctcaaa aataaataaataaataaataaataaataaataaataaataaa taaaGTCTTA chr14:102639256-10263975 - 46 1.52e-29 TCAATAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAAATTAA chr19:37918651-37919151 + 22 1.52e-29 tcggtctcaa aataaataaataaataaataaataaataaataaataaataaa taaaCAAACT chr5:34182250-34182750 + 26 1.52e-29 gaccATCACa aataaataaataaataaataaataaataaataaataaataaa taaaaaatCT chr6:30162709-30163209 + 24 1.52e-29 CTACAGTAAa aataaataaataaataaataaataaataaataaataaataaa taaaATAGTC chr1:27181865-27182365 - 34 1.52e-29 ACTCCATCTC AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TCAATCCTTT chr9:33474197-33474697 - 34 1.52e-29 CTACTCCAAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAAATAAC chr19:32398356-32398856 + 25 1.52e-29 atcctgtctc aataaataaataaataaataaataaataaataaataaataaa taaaAGAAGT chr17:19255201-19255701 - 40 1.52e-29 AACACAAGAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAGTAAAT chr3:193970363-193970863 + 30 1.52e-29 gtataataaa aataaataaataaataaataaataaataaataaataaataaa taaaAGTGAG chr10:114649185-11464968 + 17 1.52e-29 actctgtcAa aataaataaataaataaataaataaataaataaataaataaa taaataaata chr19:35385893-35386393 - 37 1.52e-29 TGTCTCAAAA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAATTAGG chr19:40103557-40104057 + 22 1.52e-29 tctgtctcaa aataaataaataaataaataaataaataaataaataaataaa taaaaagaaa chr10:35197187-35197687 - 34 1.52e-29 TCATAAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAGTAAAA chr5:138866043-138866543 - 36 1.52e-29 AAAATAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAATGAGTT chr19:43709349-43709849 - 32 1.52e-29 TAAATAACGA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA CAAAAGAATA chr6:73461333-73461833 + 3 1.52e-29 aa aataaataaataaataaataaataaataaataaataaataaa taaataaata chr19:35881952-35882452 + 18 2.98e-27 aaataaaaat aaaaaataaataaataaataaataaataaataaataaataaa Atccaagtga chr2:128227805-128228305 + 22 5.67e-27 tcagtctcaa aataaataaataaataaataaataaataaataaataaataat ataaataaat chr10:86796260-86796760 - 32 1.28e-25 CTCAAAATAC TAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TGTGCCTAAA chr11:67122383-67122883 - 57 3.75e-24 TA AATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATA AATAAAAAAT chr1:235862575-235863075 + 23 8.64e-17 tccatctcaa aacaaaCAAacacacacacacacacacacacacacacacaca cacacacacC chr5:32367212-32367712 + 35 3.03e-16 aaaataataa ataaataaataaataaagtaaataaataaataaataaataaa taactcactg chr2:27719960-27720460 - 19 3.33e-16 CCCTTCCCTG CACACACAAACACACACATACACACACACACACACACACACA CCTACAGACC chr10:72580220-72580720 - 31 9.22e-16 TCTGTCTCAA AATAAATAAATAAATAAATTAATTAATTAAATAAATAAATAA ATCAGCAAAA chr6:134052047-134052547 + 1 9.22e-16 . CATacacacacacacacacacacacacacacacacacacaca cacacacGGG chr2:169364417-169364917 - 2 2.69e-15 AGGGCACACA CACACACACACACACACACACACACACACACACACACACACA C chr6:111568239-111568739 - 11 3.21e-15 CACGTGCACG TACACACACACACACACACACACACACACACACACACACACA CACACACACA chr1:21345623-21346123 - 56 4.19e-13 GCG CACACACACACACACACACACACACACACACACACAAGCAGC TGCAGCGCCC chr1:201435696-201436196 - 16 1.07e-12 TCTCTCTCTC TTCACACACACACACACACACACACACACACACACACAGGCA CGCGCACACA chr12:57111954-57112454 + 58 2.00e-12 GCCCATTGCA ATcacaacaccacacacacacacacacacacacacacacaca c chr19:47743224-47743724 - 3 3.45e-12 GAGAGCACTT CGTGCCCGAATACACACACACACACACACACACACACACACA CA chr1:150235783-150236283 + 58 5.50e-12 cacgcacgcg cgcacacacatacacacacacatacacacacacacCCGCAGT T chrUn_KI270467v1:3090-35 - 8 3.08e-11 AAGTAGCCAA AATATATATTGTATACTGTACATAAAATATAAAATACCCCAA ATATATA chr7:127707499-127707999 - 59 6.02e-11 . CACACACACACACACACACACACACACACACACTCCTACTGG CTTGCCTTGA chr15:70097553-70098053 + 26 7.63e-11 acacacaccc aacacacacacacgcgcgcacgcacacacacacacacCAAAA AAAAAAGTGC chrUn_KI270466v1:230-730 - 48 8.59e-11 AAGTACCCAA AGTATATATTATATACTGTACATAAAATATAAAATACCCCAA ATATATATTA chrUn_KI270467v1:2887-33 - 44 1.82e-10 AAATACTCAA AATATATATTACATACTGTACATAAAATATCAAAGTACCCAA ATTATGTATT chr4:54089821-54090321 + 41 2.71e-10 aagatatctc attatatacatgcaaatgttccaaaaccataaaaaatccaaa atcttcagac chr1:28884716-28885216 + 5 5.84e-10 CCCC CCTACACATACACATACACAAATGCACAGAAACAGGAGATAC AGGATCACAA chr7:133492158-133492658 - 52 1.29e-09 ACTAAAC ACAACCAAAAGAGAACCATAAAAGCATACATAATGAAATGCT ATCTTTACCC chr7:142454775-142455275 + 10 1.43e-09 AAAGGAGCT TATAAATATTTAAAGCAGCACCCAAATGTGTTCTAATAGAAA TGCTGGGGCC chr11:62841301-62841801 + 15 2.27e-09 ACACTAGCGA TAAAAACACCTAATCCAACTCAAACAACAAGAACATAACTAT TTAGCTTGTA chr17:76671154-76671654 - 25 2.51e-09 CTGGCGCCAA GACACACACACACACACACACACACACCCTTGCTTTTCACAT TCCCTATTGT chr19:37594973-37595473 - 28 2.64e-09 CACTCGGACA CGCGCGCGCACAGACCCACACACACACGCACACACACACACA TGGCCGCAAA chr8:21491732-21492232 - 2 3.38e-09 GCCACGGACA TACACACGGACACCCACGCACCGACACACTGACATACACGCA T chrUn_KI270467v1:1949-24 - 23 6.36e-09 AAGTACACCA AATATATATTATATGCTGTACATAATATATTAAAGTTGCCCA AATATATATT chr19:36572879-36573379 + 18 8.06e-09 CTCCGTCTCT CACACACACACACCACAATGACGTCGTAAACAATAGCACTAA CCACCATCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:101945846-10194634 1.5e-29 33_[-1]_25 chr1:6404484-6404984 1.5e-29 24_[+1]_34 chr5:160008634-160009134 1.5e-29 18_[+1]_40 chr18:48873499-48873999 1.5e-29 39_[-1]_19 chr19:40567075-40567575 1.5e-29 24_[+1]_34 chr14:102639256-10263975 1.5e-29 45_[-1]_13 chr19:37918651-37919151 1.5e-29 21_[+1]_37 chr5:34182250-34182750 1.5e-29 25_[+1]_33 chr6:30162709-30163209 1.5e-29 23_[+1]_35 chr1:27181865-27182365 1.5e-29 33_[-1]_25 chr9:33474197-33474697 1.5e-29 33_[-1]_25 chr19:32398356-32398856 1.5e-29 24_[+1]_34 chr17:19255201-19255701 1.5e-29 39_[-1]_19 chr3:193970363-193970863 1.5e-29 29_[+1]_29 chr10:114649185-11464968 1.5e-29 16_[+1]_42 chr19:35385893-35386393 1.5e-29 36_[-1]_22 chr19:40103557-40104057 1.5e-29 21_[+1]_37 chr10:35197187-35197687 1.5e-29 33_[-1]_25 chr5:138866043-138866543 1.5e-29 35_[-1]_23 chr19:43709349-43709849 1.5e-29 31_[-1]_27 chr6:73461333-73461833 1.5e-29 2_[+1]_56 chr19:35881952-35882452 3e-27 17_[+1]_41 chr2:128227805-128228305 5.7e-27 21_[+1]_37 chr10:86796260-86796760 1.3e-25 31_[-1]_27 chr11:67122383-67122883 3.7e-24 56_[-1]_2 chr1:235862575-235863075 8.6e-17 22_[+1]_36 chr5:32367212-32367712 3e-16 34_[+1]_24 chr2:27719960-27720460 3.3e-16 18_[-1]_40 chr10:72580220-72580720 9.2e-16 30_[-1]_28 chr6:134052047-134052547 9.2e-16 [+1]_58 chr2:169364417-169364917 2.7e-15 1_[-1]_57 chr6:111568239-111568739 3.2e-15 10_[-1]_48 chr1:21345623-21346123 4.2e-13 55_[-1]_3 chr1:201435696-201436196 1.1e-12 15_[-1]_43 chr12:57111954-57112454 2e-12 57_[+1]_1 chr19:47743224-47743724 3.4e-12 2_[-1]_56 chr1:150235783-150236283 5.5e-12 57_[+1]_1 chrUn_KI270467v1:3090-35 3.1e-11 7_[-1]_51 chr7:127707499-127707999 6e-11 58_[-1] chr15:70097553-70098053 7.6e-11 25_[+1]_33 chrUn_KI270466v1:230-730 8.6e-11 47_[-1]_11 chrUn_KI270467v1:2887-33 1.8e-10 43_[-1]_15 chr4:54089821-54090321 2.7e-10 40_[+1]_18 chr1:28884716-28885216 5.8e-10 4_[+1]_54 chr7:133492158-133492658 1.3e-09 51_[-1]_7 chr7:142454775-142455275 1.4e-09 9_[+1]_49 chr11:62841301-62841801 2.3e-09 14_[+1]_44 chr17:76671154-76671654 2.5e-09 24_[-1]_34 chr19:37594973-37595473 2.6e-09 27_[-1]_31 chr8:21491732-21492232 3.4e-09 1_[-1]_57 chrUn_KI270467v1:1949-24 6.4e-09 22_[-1]_36 chr19:36572879-36573379 8.1e-09 17_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA width=42 seqs=52 chr15:101945846-10194634 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr1:6404484-6404984 ( 25) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:160008634-160009134 ( 19) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr18:48873499-48873999 ( 40) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:40567075-40567575 ( 25) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr14:102639256-10263975 ( 46) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:37918651-37919151 ( 22) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:34182250-34182750 ( 26) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr6:30162709-30163209 ( 24) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr1:27181865-27182365 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr9:33474197-33474697 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:32398356-32398856 ( 25) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr17:19255201-19255701 ( 40) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr3:193970363-193970863 ( 30) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr10:114649185-11464968 ( 17) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:35385893-35386393 ( 37) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:40103557-40104057 ( 22) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr10:35197187-35197687 ( 34) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:138866043-138866543 ( 36) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:43709349-43709849 ( 32) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr6:73461333-73461833 ( 3) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:35881952-35882452 ( 18) AAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr2:128227805-128228305 ( 22) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAT 1 chr10:86796260-86796760 ( 32) TAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr11:67122383-67122883 ( 57) AATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATA 1 chr1:235862575-235863075 ( 23) AACAAACAAACACACACACACACACACACACACACACACACA 1 chr5:32367212-32367712 ( 35) ATAAATAAATAAATAAAGTAAATAAATAAATAAATAAATAAA 1 chr2:27719960-27720460 ( 19) CACACACAAACACACACATACACACACACACACACACACACA 1 chr10:72580220-72580720 ( 31) AATAAATAAATAAATAAATTAATTAATTAAATAAATAAATAA 1 chr6:134052047-134052547 ( 1) CATACACACACACACACACACACACACACACACACACACACA 1 chr2:169364417-169364917 ( 2) CACACACACACACACACACACACACACACACACACACACACA 1 chr6:111568239-111568739 ( 11) TACACACACACACACACACACACACACACACACACACACACA 1 chr1:21345623-21346123 ( 56) CACACACACACACACACACACACACACACACACACAAGCAGC 1 chr1:201435696-201436196 ( 16) TTCACACACACACACACACACACACACACACACACACAGGCA 1 chr12:57111954-57112454 ( 58) ATCACAACACCACACACACACACACACACACACACACACACA 1 chr19:47743224-47743724 ( 3) CGTGCCCGAATACACACACACACACACACACACACACACACA 1 chr1:150235783-150236283 ( 58) CGCACACACATACACACACACATACACACACACACCCGCAGT 1 chrUn_KI270467v1:3090-35 ( 8) AATATATATTGTATACTGTACATAAAATATAAAATACCCCAA 1 chr7:127707499-127707999 ( 59) CACACACACACACACACACACACACACACACACTCCTACTGG 1 chr15:70097553-70098053 ( 26) AACACACACACACGCGCGCACGCACACACACACACACCAAAA 1 chrUn_KI270466v1:230-730 ( 48) AGTATATATTATATACTGTACATAAAATATAAAATACCCCAA 1 chrUn_KI270467v1:2887-33 ( 44) AATATATATTACATACTGTACATAAAATATCAAAGTACCCAA 1 chr4:54089821-54090321 ( 41) ATTATATACATGCAAATGTTCCAAAACCATAAAAAATCCAAA 1 chr1:28884716-28885216 ( 5) CCTACACATACACATACACAAATGCACAGAAACAGGAGATAC 1 chr7:133492158-133492658 ( 52) ACAACCAAAAGAGAACCATAAAAGCATACATAATGAAATGCT 1 chr7:142454775-142455275 ( 10) TATAAATATTTAAAGCAGCACCCAAATGTGTTCTAATAGAAA 1 chr11:62841301-62841801 ( 15) TAAAAACACCTAATCCAACTCAAACAACAAGAACATAACTAT 1 chr17:76671154-76671654 ( 25) GACACACACACACACACACACACACACCCTTGCTTTTCACAT 1 chr19:37594973-37595473 ( 28) CGCGCGCGCACAGACCCACACACACACGCACACACACACACA 1 chr8:21491732-21492232 ( 2) TACACACGGACACCCACGCACCGACACACTGACATACACGCA 1 chrUn_KI270467v1:1949-24 ( 23) AATATATATTATATGCTGTACATAATATATTAAAGTTGCCCA 1 chr19:36572879-36573379 ( 18) CACACACACACACCACAATGACGTCGTAAACAATAGCACTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 42 n= 35400 bayes= 8.28923 E= 3.8e-503 171 -61 -393 -84 197 -293 -193 -142 -110 -13 -1234 162 222 -1234 -293 -1234 148 15 -1234 -110 216 -293 -393 -342 -184 15 -1234 158 216 -393 -235 -1234 158 -23 -393 -84 204 -293 -1234 -84 -142 -3 -293 153 213 -393 -393 -184 162 15 -293 -1234 200 -293 -393 -84 -62 7 -293 133 197 -76 -393 -1234 148 15 -1234 -110 200 -1234 -76 -1234 -1234 15 -1234 171 216 -1234 -393 -184 148 53 -1234 -1234 213 -193 -393 -1234 -184 -13 -293 162 216 -1234 -293 -242 162 31 -1234 -1234 222 -1234 -393 -342 -110 15 -1234 148 197 -235 -293 -110 166 7 -393 -342 204 -1234 -393 -62 -110 -3 -293 148 219 -1234 -393 -242 171 15 -1234 -1234 210 -393 -1234 -110 -110 -23 -193 148 200 -293 -293 -110 158 -3 -1234 -110 197 -135 -193 -1234 -110 31 -293 128 186 -161 -235 -110 175 -35 -235 -342 204 -293 -393 -110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 42 nsites= 52 E= 3.8e-503 0.673077 0.192308 0.019231 0.115385 0.807692 0.038462 0.076923 0.076923 0.096154 0.269231 0.000000 0.634615 0.961538 0.000000 0.038462 0.000000 0.576923 0.326923 0.000000 0.096154 0.923077 0.038462 0.019231 0.019231 0.057692 0.326923 0.000000 0.615385 0.923077 0.019231 0.057692 0.000000 0.615385 0.250000 0.019231 0.115385 0.846154 0.038462 0.000000 0.115385 0.076923 0.288462 0.038462 0.596154 0.903846 0.019231 0.019231 0.057692 0.634615 0.326923 0.038462 0.000000 0.826923 0.038462 0.019231 0.115385 0.134615 0.307692 0.038462 0.519231 0.807692 0.173077 0.019231 0.000000 0.576923 0.326923 0.000000 0.096154 0.826923 0.000000 0.173077 0.000000 0.000000 0.326923 0.000000 0.673077 0.923077 0.000000 0.019231 0.057692 0.576923 0.423077 0.000000 0.000000 0.903846 0.076923 0.019231 0.000000 0.057692 0.269231 0.038462 0.634615 0.923077 0.000000 0.038462 0.038462 0.634615 0.365385 0.000000 0.000000 0.961538 0.000000 0.019231 0.019231 0.096154 0.326923 0.000000 0.576923 0.807692 0.057692 0.038462 0.096154 0.653846 0.307692 0.019231 0.019231 0.846154 0.000000 0.019231 0.134615 0.096154 0.288462 0.038462 0.576923 0.942308 0.000000 0.019231 0.038462 0.673077 0.326923 0.000000 0.000000 0.884615 0.019231 0.000000 0.096154 0.096154 0.250000 0.076923 0.576923 0.826923 0.038462 0.038462 0.096154 0.615385 0.288462 0.000000 0.096154 0.807692 0.115385 0.076923 0.000000 0.096154 0.365385 0.038462 0.500000 0.750000 0.096154 0.057692 0.096154 0.692308 0.230769 0.057692 0.019231 0.846154 0.038462 0.019231 0.096154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAYAAATAMAYAMATAMATAMAYAAAYAAATAAAYAAA MEME-1 regular expression -------------------------------------------------------------------------------- AA[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A[TC]A[AC]A -------------------------------------------------------------------------------- Time 820.04 secs. ******************************************************************************** ******************************************************************************** MOTIF HDGGKBCCMAGCATTTCTAATR MEME-2 width = 22 sites = 54 llr = 839 E-value = 1.9e-113 ******************************************************************************** -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4321111147::a:::::7614 pos.-specific C 311::2873::a::::a12:22 probability G 1467341113a:::::::1113 matrix T 222163111::::aaa:91351 bits 2.3 ** * 2.1 **** 1.8 ***** 1.6 ******** Relative 1.4 ********* Entropy 1.1 ********* (22.4 bits) 0.9 ********* * 0.7 ** ** *********** 0.5 *** ** ************ 0.2 * *** **************** 0.0 ---------------------- Multilevel AGGGTGCCAAGCATTTCTAATA consensus CAA GT CG TCG sequence TT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:149357888-149358388 - 56 1.16e-12 CGAAACATTT TTGGTCCCAAGCATTTCTAATA AGGGATACTC chr10:86867098-86867598 + 32 1.66e-12 caaaacactt ctggtcccaagcatttctaata aggagtagtc chr9:653937-654437 + 67 1.30e-11 tagcccgttg tggggcccaagcatttctaata agtcctcagg chrX:96834090-96834590 + 30 2.83e-11 tgaagcagtt ctggtcccaagcatttctaaca gggataccca chr2:37320978-37321478 + 32 4.05e-10 TAATATCATC TAGTTGGCAAGCATTTCTAATA TGTTTATTTA chr9:1004975-1005475 - 49 4.75e-10 GGATTGGTTT CAGTGACCAAGCATTTCTAATG AGAACACACT chr17:27288121-27288621 - 47 5.58e-10 TGAAACACTT CTGGTCCCAAGCATTTCCAATG AGAGATATTC chr20:58231625-58232125 + 77 6.52e-10 CTTCAAGATG AGGGTTACCAGCATTTCTAAAA TA chrX:116298901-116299401 + 34 9.96e-10 TCCCATTGTT TGGGTTCCAAGCATTTCTTTTC ATCTTTTGTT chr15:30023747-30024247 - 43 1.15e-09 TTAATGTTCC AAAGTGCCAAGCATTTCTCTAA AGTGTATAAA chr1:230090040-230090540 - 7 1.32e-09 TCAACCACAG AAAGTTCCCAGCATTTCCAATC AGTTGG chr10:13375272-13375772 + 45 1.76e-09 TGAGTTAATG ACTGTTCCCAGCATTTCTCTTA ATACTCCAGG chr7:133298029-133298529 + 38 2.95e-09 AAGAGCTGTG TAAGTGCTGAGCATTTCTAATG GATTTGGGGC chr13:71500064-71500564 - 36 3.36e-09 GCACCCTGTG ATGGTGCCTAGCATTTCTCTTC ATTTTTGCTT chr10:119100383-11910088 + 63 3.82e-09 ggacttcggc agtgttcccagcatttctagaa ctgatcaaac chr18:39774906-39775406 - 31 4.90e-09 GCATGTTCTT AGGGGTCTAAGCATTTCTATGA GTTTTCATAT chr19:33320585-33321085 - 31 6.21e-09 TTTCCTGGTT TAGGCCCCCAGCATTTCTAATC TGCATTACTA chr12:111606579-11160707 - 21 7.87e-09 TCTGGCTCTG CAGAGCCCAAGCATTTCCAATG AAAAATAAAG chr17:49628460-49628960 + 57 8.86e-09 ccaaaacact ctggtcccaagcatttccgata agtggatatt chr7:42154091-42154591 + 70 8.86e-09 AGGGGCTTTG TGTGTTCCAGGCATTTTTAATG TGTCTCCAG chr18:25451182-25451682 - 65 9.95e-09 TTTGGTGTTT TGGGTTTCTAGCATTTCTATTT GATTCTTTCT chr12:68565375-68565875 - 24 1.24e-08 TCATTCTTTC CTGTTGCCCAGCATTTCTAGCA AAGTTGAAAC chr12:111591343-11159184 - 27 1.24e-08 GCCTCAATCT ATGGGGCCAAGCATTTCTCCTG TCTTAGCCTC chr7:139367700-139368200 - 30 2.14e-08 GCTCACAGCC ACTTTCCCTAGCATTTCTATCA GGCCTCTCTT chr7:341954-342454 + 47 2.14e-08 ATAGCCTCTA TAACTGCCCAGCATTTCTATTG ACTCAAGATA chr5:7875100-7875600 + 27 2.37e-08 CTTCAAGAGC TTGGAGCCCGGCATTTCTATGA CACTGGACAT chr4:19786565-19787065 + 38 2.91e-08 TGATATAGTG ATGAGACCCAGCATTTCTTTTT GATTTTGAGT chr10:46022844-46023344 + 59 3.22e-08 ATTTCTAATT CGAAAACAAGGCATTTCTAATA CGAAAGCAAC chr14:52296327-52296827 - 40 3.56e-08 GGATTTTTGG AGGGTTCCCACCATTTCTTACA TGATAAGGGT chr18:32280333-32280833 + 51 4.34e-08 TGGGATCCAC AGGGTGCCAAGCATTTCTGGAG CTCTTTTTGG chr3:12347249-12347749 + 31 5.26e-08 AGGAGTGTCC CATTGGCCCAGCATTTCTCTCA TGTTGTCTCT chr10:126259832-12626033 + 52 5.78e-08 ACCTGCCTAC AAGGGCCCCAGCATTTCTTcca tacacattac chr20:63491062-63491562 + 52 5.78e-08 GCGGCACATG AGCGTCCCTGGCATTTCTCATG GATCTACTTA chr6:5306315-5306815 - 54 5.78e-08 TACTGTTATA TCAAGGACAAGCATTTCTAATC CAAAATTCCA chr6:135604262-135604762 + 32 6.35e-08 actccctctt tgggttcccggcatttccaagc tactgggcat chr7:127707499-127707999 - 20 8.37e-08 TGAAATTTTC AAGAGCTTCAGCATTTCTAATT GTTCAAATTC chr10:77763385-77763885 + 48 8.37e-08 CTGAAACATC CCCAAGCCTAGCATTTCTAATA TAGGGCTGGA chr19:1587794-1588294 - 34 9.16e-08 TGAGCTAAGC ATGGGACCAAGCATTTCTGTGC AGTGCCTGCA chr18:46939296-46939796 + 10 9.16e-08 agtattcat cgtgtgccaggcatttccaagc actGGAATCA chrX:24210175-24210675 + 58 1.30e-07 GAATGCGATG AGTGTGGGAAGCATTTCTCTCA TGCAGGGGCT chr21:26834370-26834870 + 29 1.42e-07 TATAGTTAAT GAGGGTCAGGGCATTTCTCATG TATATCCTCC chr4:75290189-75290689 - 53 1.68e-07 GGTGGCCTGG GGAGAATCAGGCATTTCTAACA TGTAATGGCT chr10:15860751-15861251 - 37 2.14e-07 CTGCGTTGCA GCTGGTGGAAGCATTTCTAATG CACATTATGC chr10:102503478-10250397 + 76 2.32e-07 AGCACCTCAG AGGGTGCTCAGCATCTCTAAAC TTG chr10:5663608-5664108 - 31 3.43e-07 CACTAGGGTA GCAGTCCAGGGCATTTCTAAAG GGTAGAGAGT chr10:70576658-70577158 - 74 3.70e-07 AGACT CTGAAACAGGGCATTTCTAAAG GACAAACTGA chr20:44733180-44733680 - 35 3.98e-07 TTCTGTAGGT CTGGGATGGGGCATTTCTAACA AGTCTCCAGG chr12:62813137-62813637 - 34 4.29e-07 CCCGAATGAA AACTAGGAAAGCATTTCTAACG TGTCTCTTAC chr13:51802069-51802569 - 53 4.29e-07 CTTCTGAGTC AGTAGGCAGGGCATTTCCAACA GGTTTCCAGA chr6:73803389-73803889 - 6 4.97e-07 AGCTGTGTCA CAATCACCCGGCATTTCTAACT GATTT chr6:20437619-20438119 - 9 5.34e-07 TCTGCCAGAC CCTGGGCAGGGCATTTCTCTTG GACTCTGC chr4:101201293-101201793 - 24 5.34e-07 AGGGAAAATT AAAGTGCCCAGCATTTTGTATG CGTTTACTTA chr7:128944788-128945288 - 7 9.27e-07 AGGTGAGGTG AGGGTTACCAACATTTCTTTCT ACCTTT chr15:99568500-99569000 + 70 1.36e-06 TGATGGGCCT GGATTTGGGGGCATTTCTAATT TCACATATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:149357888-149358388 1.2e-12 55_[-2]_23 chr10:86867098-86867598 1.7e-12 31_[+2]_47 chr9:653937-654437 1.3e-11 66_[+2]_12 chrX:96834090-96834590 2.8e-11 29_[+2]_49 chr2:37320978-37321478 4e-10 31_[+2]_47 chr9:1004975-1005475 4.8e-10 48_[-2]_30 chr17:27288121-27288621 5.6e-10 46_[-2]_32 chr20:58231625-58232125 6.5e-10 76_[+2]_2 chrX:116298901-116299401 1e-09 33_[+2]_45 chr15:30023747-30024247 1.1e-09 42_[-2]_36 chr1:230090040-230090540 1.3e-09 6_[-2]_72 chr10:13375272-13375772 1.8e-09 44_[+2]_34 chr7:133298029-133298529 2.9e-09 37_[+2]_41 chr13:71500064-71500564 3.4e-09 35_[-2]_43 chr10:119100383-11910088 3.8e-09 62_[+2]_16 chr18:39774906-39775406 4.9e-09 30_[-2]_48 chr19:33320585-33321085 6.2e-09 30_[-2]_48 chr12:111606579-11160707 7.9e-09 20_[-2]_58 chr17:49628460-49628960 8.9e-09 56_[+2]_22 chr7:42154091-42154591 8.9e-09 69_[+2]_9 chr18:25451182-25451682 9.9e-09 64_[-2]_14 chr12:68565375-68565875 1.2e-08 23_[-2]_55 chr12:111591343-11159184 1.2e-08 26_[-2]_52 chr7:139367700-139368200 2.1e-08 29_[-2]_49 chr7:341954-342454 2.1e-08 46_[+2]_32 chr5:7875100-7875600 2.4e-08 26_[+2]_52 chr4:19786565-19787065 2.9e-08 37_[+2]_41 chr10:46022844-46023344 3.2e-08 58_[+2]_20 chr14:52296327-52296827 3.6e-08 39_[-2]_39 chr18:32280333-32280833 4.3e-08 50_[+2]_28 chr3:12347249-12347749 5.3e-08 30_[+2]_48 chr10:126259832-12626033 5.8e-08 51_[+2]_27 chr20:63491062-63491562 5.8e-08 51_[+2]_27 chr6:5306315-5306815 5.8e-08 53_[-2]_25 chr6:135604262-135604762 6.3e-08 31_[+2]_47 chr7:127707499-127707999 8.4e-08 19_[-2]_59 chr10:77763385-77763885 8.4e-08 47_[+2]_31 chr19:1587794-1588294 9.2e-08 33_[-2]_45 chr18:46939296-46939796 9.2e-08 9_[+2]_69 chrX:24210175-24210675 1.3e-07 57_[+2]_21 chr21:26834370-26834870 1.4e-07 28_[+2]_50 chr4:75290189-75290689 1.7e-07 52_[-2]_26 chr10:15860751-15861251 2.1e-07 36_[-2]_42 chr10:102503478-10250397 2.3e-07 75_[+2]_3 chr10:5663608-5664108 3.4e-07 30_[-2]_48 chr10:70576658-70577158 3.7e-07 73_[-2]_5 chr20:44733180-44733680 4e-07 34_[-2]_44 chr12:62813137-62813637 4.3e-07 33_[-2]_45 chr13:51802069-51802569 4.3e-07 52_[-2]_26 chr6:73803389-73803889 5e-07 5_[-2]_73 chr6:20437619-20438119 5.3e-07 8_[-2]_70 chr4:101201293-101201793 5.3e-07 23_[-2]_55 chr7:128944788-128945288 9.3e-07 6_[-2]_72 chr15:99568500-99569000 1.4e-06 69_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HDGGKBCCMAGCATTTCTAATR width=22 seqs=54 chr6:149357888-149358388 ( 56) TTGGTCCCAAGCATTTCTAATA 1 chr10:86867098-86867598 ( 32) CTGGTCCCAAGCATTTCTAATA 1 chr9:653937-654437 ( 67) TGGGGCCCAAGCATTTCTAATA 1 chrX:96834090-96834590 ( 30) CTGGTCCCAAGCATTTCTAACA 1 chr2:37320978-37321478 ( 32) TAGTTGGCAAGCATTTCTAATA 1 chr9:1004975-1005475 ( 49) CAGTGACCAAGCATTTCTAATG 1 chr17:27288121-27288621 ( 47) CTGGTCCCAAGCATTTCCAATG 1 chr20:58231625-58232125 ( 77) AGGGTTACCAGCATTTCTAAAA 1 chrX:116298901-116299401 ( 34) TGGGTTCCAAGCATTTCTTTTC 1 chr15:30023747-30024247 ( 43) AAAGTGCCAAGCATTTCTCTAA 1 chr1:230090040-230090540 ( 7) AAAGTTCCCAGCATTTCCAATC 1 chr10:13375272-13375772 ( 45) ACTGTTCCCAGCATTTCTCTTA 1 chr7:133298029-133298529 ( 38) TAAGTGCTGAGCATTTCTAATG 1 chr13:71500064-71500564 ( 36) ATGGTGCCTAGCATTTCTCTTC 1 chr10:119100383-11910088 ( 63) AGTGTTCCCAGCATTTCTAGAA 1 chr18:39774906-39775406 ( 31) AGGGGTCTAAGCATTTCTATGA 1 chr19:33320585-33321085 ( 31) TAGGCCCCCAGCATTTCTAATC 1 chr12:111606579-11160707 ( 21) CAGAGCCCAAGCATTTCCAATG 1 chr17:49628460-49628960 ( 57) CTGGTCCCAAGCATTTCCGATA 1 chr7:42154091-42154591 ( 70) TGTGTTCCAGGCATTTTTAATG 1 chr18:25451182-25451682 ( 65) TGGGTTTCTAGCATTTCTATTT 1 chr12:68565375-68565875 ( 24) CTGTTGCCCAGCATTTCTAGCA 1 chr12:111591343-11159184 ( 27) ATGGGGCCAAGCATTTCTCCTG 1 chr7:139367700-139368200 ( 30) ACTTTCCCTAGCATTTCTATCA 1 chr7:341954-342454 ( 47) TAACTGCCCAGCATTTCTATTG 1 chr5:7875100-7875600 ( 27) TTGGAGCCCGGCATTTCTATGA 1 chr4:19786565-19787065 ( 38) ATGAGACCCAGCATTTCTTTTT 1 chr10:46022844-46023344 ( 59) CGAAAACAAGGCATTTCTAATA 1 chr14:52296327-52296827 ( 40) AGGGTTCCCACCATTTCTTACA 1 chr18:32280333-32280833 ( 51) AGGGTGCCAAGCATTTCTGGAG 1 chr3:12347249-12347749 ( 31) CATTGGCCCAGCATTTCTCTCA 1 chr10:126259832-12626033 ( 52) AAGGGCCCCAGCATTTCTTCCA 1 chr20:63491062-63491562 ( 52) AGCGTCCCTGGCATTTCTCATG 1 chr6:5306315-5306815 ( 54) TCAAGGACAAGCATTTCTAATC 1 chr6:135604262-135604762 ( 32) TGGGTTCCCGGCATTTCCAAGC 1 chr7:127707499-127707999 ( 20) AAGAGCTTCAGCATTTCTAATT 1 chr10:77763385-77763885 ( 48) CCCAAGCCTAGCATTTCTAATA 1 chr19:1587794-1588294 ( 34) ATGGGACCAAGCATTTCTGTGC 1 chr18:46939296-46939796 ( 10) CGTGTGCCAGGCATTTCCAAGC 1 chrX:24210175-24210675 ( 58) AGTGTGGGAAGCATTTCTCTCA 1 chr21:26834370-26834870 ( 29) GAGGGTCAGGGCATTTCTCATG 1 chr4:75290189-75290689 ( 53) GGAGAATCAGGCATTTCTAACA 1 chr10:15860751-15861251 ( 37) GCTGGTGGAAGCATTTCTAATG 1 chr10:102503478-10250397 ( 76) AGGGTGCTCAGCATCTCTAAAC 1 chr10:5663608-5664108 ( 31) GCAGTCCAGGGCATTTCTAAAG 1 chr10:70576658-70577158 ( 74) CTGAAACAGGGCATTTCTAAAG 1 chr20:44733180-44733680 ( 35) CTGGGATGGGGCATTTCTAACA 1 chr12:62813137-62813637 ( 34) AACTAGGAAAGCATTTCTAACG 1 chr13:51802069-51802569 ( 53) AGTAGGCAGGGCATTTCCAACA 1 chr6:73803389-73803889 ( 6) CAATCACCCGGCATTTCTAACT 1 chr6:20437619-20438119 ( 9) CCTGGGCAGGGCATTTCTCTTG 1 chr4:101201293-101201793 ( 24) AAAGTGCCCAGCATTTTGTATG 1 chr7:128944788-128945288 ( 7) AGGGTTACCAACATTTCTTTCT 1 chr15:99568500-99569000 ( 70) GGATTTGGGGGCATTTCTAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.3456 E= 1.9e-113 98 -8 -167 11 43 -118 26 22 -2 -240 92 -16 -48 -398 122 -48 -89 -299 1 143 -48 -29 26 33 -189 140 -167 -148 -67 130 -199 -148 105 18 -99 -115 181 -1240 -8 -1240 -347 -398 171 -1240 -1240 177 -1240 -1240 228 -1240 -1240 -1240 -1240 -1240 -1240 228 -1240 -398 -1240 225 -1240 -1240 -1240 228 -1240 171 -1240 -248 -1240 -118 -398 205 169 -82 -240 -89 161 -299 -240 43 -67 -29 -167 138 105 -82 1 -89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 54 E= 1.9e-113 0.407407 0.277778 0.092593 0.222222 0.277778 0.129630 0.351852 0.240741 0.203704 0.055556 0.555556 0.185185 0.148148 0.018519 0.685185 0.148148 0.111111 0.037037 0.296296 0.555556 0.148148 0.240741 0.351852 0.259259 0.055556 0.777778 0.092593 0.074074 0.129630 0.722222 0.074074 0.074074 0.425926 0.333333 0.148148 0.092593 0.722222 0.000000 0.277778 0.000000 0.018519 0.018519 0.962963 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.018519 0.000000 0.981481 0.000000 0.000000 0.000000 1.000000 0.000000 0.962963 0.000000 0.037037 0.000000 0.129630 0.018519 0.851852 0.666667 0.166667 0.055556 0.111111 0.629630 0.037037 0.055556 0.277778 0.129630 0.240741 0.092593 0.537037 0.425926 0.166667 0.296296 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HDGGKBCCMAGCATTTCTAATR MEME-2 regular expression -------------------------------------------------------------------------------- [ACT][GAT][GA]G[TG][GTC]CC[AC][AG]GCATTTCTA[AT][TC][AG] -------------------------------------------------------------------------------- Time 1551.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATAAATWAWWWRAW MEME-3 width = 16 sites = 40 llr = 480 E-value = 5.2e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A a76:a79257446675 pos.-specific C :2:::1::1111::22 probability G ::32::121:12:31: matrix T :218:2:6434341:3 bits 2.3 * * 2.1 * * 1.8 * * * 1.6 * * * Relative 1.4 * ** * * Entropy 1.1 * ** * * * (17.3 bits) 0.9 ******** * * * 0.7 ********** *** 0.5 *********** **** 0.2 **************** 0.0 ---------------- Multilevel AAATAAATAATAAAAA consensus TGG T ATTATTGCT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr6:73461333-73461833 + 50 8.41e-11 ataaataaat aaataaataaataaaa ataaaaaata chr15:101945846-10194634 - 16 3.24e-10 TAAATAAATA AAATAAATTATTTAAA AATCGGCAGA chr6:79078218-79078718 - 36 3.24e-10 CTCCGACTGG AAATAAATAAATAAAT CGCACGCCCT chr2:128227805-128228305 + 66 3.24e-10 taaataatat aaataaataaataaat aaaGTTTAGT chr19:35881952-35882452 + 2 6.85e-09 a aaataaaaataaaaat aaaaaataaa chrUn_KI270467v1:3090-35 - 77 3.79e-08 AGTACCCA AAATATATATTGTAAA CTGTACATAA chr8:124200495-124200995 - 10 8.69e-08 AAAAGAATGG AAATATATTTAATTAA CATTACTGA chr17:7484261-7484761 - 67 2.64e-07 AGCTCCCAAA AAGGAAAAAAAAAGAA GGGAAAAGGA chrUn_KI270467v1:1949-24 - 6 2.91e-07 AGTTGCCCAA ATATATATTATATACT GTACA chr14:99821635-99822135 - 9 2.91e-07 TTAGCCACAG AAGTACATTATAAAAC CGACATAT chr19:40103557-40104057 + 67 3.28e-07 aaataaataa aaagaaagaaactaaa aatttcaact chr10:35197187-35197687 - 6 3.28e-07 AAGTAAAATG AAATAAAATTTATTAC TCATT chr14:102639256-10263975 - 19 3.69e-07 AAAAATTAAA AAATAAATTAATTAGC CAGACATGCT chr6:150418256-150418756 - 9 5.64e-07 GATCTGGAAG ACATAAATTACTAACA CGTAGAAA chr12:131487549-13148804 + 43 6.27e-07 GACATTCTCG ATAGAAAATAAAAACA CTTCAGCAGA chr1:81126952-81127452 + 70 7.70e-07 AAGGATTAGA AAGTAAATGAAGTGAA CAACCACGAA chr17:19255201-19255701 - 22 7.70e-07 TAAATAAATA AAGTAAATGAAGAAAC TCAAGCAATA chr18:25451182-25451682 + 43 8.52e-07 aagcagggag atggaaatattaagaa agaatcaaat chrUn_KI270466v1:230-730 - 32 8.52e-07 AATACCCCAA ATATATATTATATGCT GTACATAAAA chr5:160008634-160009134 + 62 8.52e-07 ataaataaat aaataaataGTGAAAC GAACACCACA chr18:39774906-39775406 + 15 1.15e-06 GTCCTTTTTC AAAGAAATATGAAAAC TCATAGAAAT chr9:33474197-33474697 - 15 1.68e-06 AAATAAATAA AAATAACTAAATTACT TGAAATTGTA chr3:193970363-193970863 + 13 1.68e-06 gtaccctaga acttaaagtataataa aaataaataa chrX:116298901-116299401 - 7 2.21e-06 ACAATGGGAG AAGTAGATAATGAGAA GTGGAA chr10:86796260-86796760 + 6 2.63e-06 ATCAG AATTATATCACATAAA TTTAGGCACa chr11:86241905-86242405 + 16 2.88e-06 GCATAGAATT ACATAAATTTAGAGCT GCCTGGGTCC chr17:28823503-28824003 - 46 2.88e-06 CTGAGCTGAA ATAGATAGAATTTGAA GTCATGGTAT chr7:133492158-133492658 + 1 2.88e-06 . AAATATAAAAAGAGGA GTAGTTTTTA chr17:26603646-26604146 + 51 3.72e-06 aatcatcttc acataaaaactataca gatgcattct chr10:86867098-86867598 + 4 4.04e-06 caa atttaaaaatccaaaa tccaaaacac chr1:41870102-41870602 + 70 4.37e-06 tcaacgttgc aattaaataatcacac acacaatact chr8:21491732-21492232 - 75 5.16e-06 TACCCGAAGA AAATAAAACACATGCA GCTATGAAAG chrUn_KI270467v1:2887-33 + 21 5.57e-06 ctgataattt acgtacagtatataat acataatttg chr3:15933388-15933888 + 24 6.05e-06 CCTGTGCACT AATGATAATTTAAGAT GATGGTGTCC chr15:66883319-66883819 + 79 7.05e-06 TGGCAAAACC ACGGAAAGTATTTGAA ACACGC chr6:5306315-5306815 - 4 7.05e-06 GCCCTCTGAA ATGTAAATACTCATAA ATT chr19:43709349-43709849 - 75 7.62e-06 TAAAACTACA AAATAAGTAAATAACG AAATAAATAA chr10:114649185-11464968 + 64 1.47e-05 ataaataaat aaataaaggtgttgat atcaaaggtt chr17:49628460-49628960 + 1 1.68e-05 . aagtacgtaacaaaac tattccaaaa chr17:27288121-27288621 + 14 1.93e-05 TGGAGGATGC ATATACAGTTACATAT Acaggttgaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:73461333-73461833 8.4e-11 49_[+3]_35 chr15:101945846-10194634 3.2e-10 15_[-3]_69 chr6:79078218-79078718 3.2e-10 35_[-3]_49 chr2:128227805-128228305 3.2e-10 65_[+3]_19 chr19:35881952-35882452 6.8e-09 1_[+3]_83 chrUn_KI270467v1:3090-35 3.8e-08 76_[-3]_8 chr8:124200495-124200995 8.7e-08 9_[-3]_75 chr17:7484261-7484761 2.6e-07 66_[-3]_18 chrUn_KI270467v1:1949-24 2.9e-07 5_[-3]_79 chr14:99821635-99822135 2.9e-07 8_[-3]_76 chr19:40103557-40104057 3.3e-07 66_[+3]_18 chr10:35197187-35197687 3.3e-07 5_[-3]_79 chr14:102639256-10263975 3.7e-07 18_[-3]_66 chr6:150418256-150418756 5.6e-07 8_[-3]_76 chr12:131487549-13148804 6.3e-07 42_[+3]_42 chr1:81126952-81127452 7.7e-07 69_[+3]_15 chr17:19255201-19255701 7.7e-07 21_[-3]_63 chr18:25451182-25451682 8.5e-07 42_[+3]_42 chrUn_KI270466v1:230-730 8.5e-07 31_[-3]_53 chr5:160008634-160009134 8.5e-07 61_[+3]_23 chr18:39774906-39775406 1.1e-06 14_[+3]_70 chr9:33474197-33474697 1.7e-06 14_[-3]_70 chr3:193970363-193970863 1.7e-06 12_[+3]_72 chrX:116298901-116299401 2.2e-06 6_[-3]_78 chr10:86796260-86796760 2.6e-06 5_[+3]_79 chr11:86241905-86242405 2.9e-06 15_[+3]_69 chr17:28823503-28824003 2.9e-06 45_[-3]_39 chr7:133492158-133492658 2.9e-06 [+3]_84 chr17:26603646-26604146 3.7e-06 50_[+3]_34 chr10:86867098-86867598 4e-06 3_[+3]_81 chr1:41870102-41870602 4.4e-06 69_[+3]_15 chr8:21491732-21492232 5.2e-06 74_[-3]_10 chrUn_KI270467v1:2887-33 5.6e-06 20_[+3]_64 chr3:15933388-15933888 6e-06 23_[+3]_61 chr15:66883319-66883819 7.1e-06 78_[+3]_6 chr6:5306315-5306815 7.1e-06 3_[-3]_81 chr19:43709349-43709849 7.6e-06 74_[-3]_10 chr10:114649185-11464968 1.5e-05 63_[+3]_21 chr17:49628460-49628960 1.7e-05 [+3]_84 chr17:27288121-27288621 1.9e-05 13_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATAAATWAWWWRAW width=16 seqs=40 chr6:73461333-73461833 ( 50) AAATAAATAAATAAAA 1 chr15:101945846-10194634 ( 16) AAATAAATTATTTAAA 1 chr6:79078218-79078718 ( 36) AAATAAATAAATAAAT 1 chr2:128227805-128228305 ( 66) AAATAAATAAATAAAT 1 chr19:35881952-35882452 ( 2) AAATAAAAATAAAAAT 1 chrUn_KI270467v1:3090-35 ( 77) AAATATATATTGTAAA 1 chr8:124200495-124200995 ( 10) AAATATATTTAATTAA 1 chr17:7484261-7484761 ( 67) AAGGAAAAAAAAAGAA 1 chrUn_KI270467v1:1949-24 ( 6) ATATATATTATATACT 1 chr14:99821635-99822135 ( 9) AAGTACATTATAAAAC 1 chr19:40103557-40104057 ( 67) AAAGAAAGAAACTAAA 1 chr10:35197187-35197687 ( 6) AAATAAAATTTATTAC 1 chr14:102639256-10263975 ( 19) AAATAAATTAATTAGC 1 chr6:150418256-150418756 ( 9) ACATAAATTACTAACA 1 chr12:131487549-13148804 ( 43) ATAGAAAATAAAAACA 1 chr1:81126952-81127452 ( 70) AAGTAAATGAAGTGAA 1 chr17:19255201-19255701 ( 22) AAGTAAATGAAGAAAC 1 chr18:25451182-25451682 ( 43) ATGGAAATATTAAGAA 1 chrUn_KI270466v1:230-730 ( 32) ATATATATTATATGCT 1 chr5:160008634-160009134 ( 62) AAATAAATAGTGAAAC 1 chr18:39774906-39775406 ( 15) AAAGAAATATGAAAAC 1 chr9:33474197-33474697 ( 15) AAATAACTAAATTACT 1 chr3:193970363-193970863 ( 13) ACTTAAAGTATAATAA 1 chrX:116298901-116299401 ( 7) AAGTAGATAATGAGAA 1 chr10:86796260-86796760 ( 6) AATTATATCACATAAA 1 chr11:86241905-86242405 ( 16) ACATAAATTTAGAGCT 1 chr17:28823503-28824003 ( 46) ATAGATAGAATTTGAA 1 chr7:133492158-133492658 ( 1) AAATATAAAAAGAGGA 1 chr17:26603646-26604146 ( 51) ACATAAAAACTATACA 1 chr10:86867098-86867598 ( 4) ATTTAAAAATCCAAAA 1 chr1:41870102-41870602 ( 70) AATTAAATAATCACAC 1 chr8:21491732-21492232 ( 75) AAATAAAACACATGCA 1 chrUn_KI270467v1:2887-33 ( 21) ACGTACAGTATATAAT 1 chr3:15933388-15933888 ( 24) AATGATAATTTAAGAT 1 chr15:66883319-66883819 ( 79) ACGGAAAGTATTTGAA 1 chr6:5306315-5306815 ( 4) ATGTAAATACTCATAA 1 chr19:43709349-43709849 ( 75) AAATAAGTAAATAACG 1 chr10:114649185-11464968 ( 64) AAATAAAGGTGTTGAT 1 chr17:49628460-49628960 ( 1) AAGTACGTAACAAAAC 1 chr17:27288121-27288621 ( 14) ATATACAGTTACATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.1525 E= 5.2e-019 228 -1197 -1197 -1197 166 -97 -1197 -4 160 -1197 -23 -72 -1197 -1197 -55 196 228 -1197 -1197 -1197 171 -155 -355 -4 217 -355 -255 -1197 13 -1197 -75 154 128 -255 -197 86 166 -255 -355 42 96 -123 -255 104 104 -123 -75 42 148 -1197 -1197 104 142 -355 3 -72 181 -38 -255 -1197 128 -55 -355 42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 40 E= 5.2e-019 1.000000 0.000000 0.000000 0.000000 0.650000 0.150000 0.000000 0.200000 0.625000 0.000000 0.250000 0.125000 0.000000 0.000000 0.200000 0.800000 1.000000 0.000000 0.000000 0.000000 0.675000 0.100000 0.025000 0.200000 0.925000 0.025000 0.050000 0.000000 0.225000 0.000000 0.175000 0.600000 0.500000 0.050000 0.075000 0.375000 0.650000 0.050000 0.025000 0.275000 0.400000 0.125000 0.050000 0.425000 0.425000 0.125000 0.175000 0.275000 0.575000 0.000000 0.000000 0.425000 0.550000 0.025000 0.300000 0.125000 0.725000 0.225000 0.050000 0.000000 0.500000 0.200000 0.025000 0.275000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATWAWWWRAW MEME-3 regular expression -------------------------------------------------------------------------------- A[AT][AG][TG]A[AT]A[TA][AT][AT][TA][AT][AT][AG][AC][ATC] -------------------------------------------------------------------------------- Time 2273.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGACVGAGTCTCRC MEME-4 width = 16 sites = 16 llr = 245 E-value = 5.9e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGACVGAGTCTCRC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::9:9:4:a:2:::4: pos.-specific C 3:1::82::118:8:8 probability G :a19::4a:9:::163 matrix T 8::1121:::73a2:: bits 2.3 * * 2.1 * * * 1.8 * * ** * 1.6 ** * ** * Relative 1.4 ***** *** * Entropy 1.1 ****** *** ** (22.1 bits) 0.9 ****** ********* 0.7 ****** ********* 0.5 ****** ********* 0.2 **************** 0.0 ---------------- Multilevel TGAGACAGAGTCTCGC consensus C G T AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGACVGAGTCTCRC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr10:72580220-72580720 + 74 4.39e-10 ttatttattt tgagacagagtctcac attgtcaccc chr1:6404484-6404984 - 9 8.08e-10 TTTATTTATT TGAGACGGAGTCTCGC TCTGTCGC chr10:35197187-35197687 + 83 8.08e-10 atttatttTA tgagacggagtctcgc tc chr18:48873499-48873999 + 83 2.44e-09 ttatttattt tgagacggagtttcgc tc chr19:37918651-37919151 - 5 2.44e-09 TTATTTATTT TGAGACCGAGTCTCGC TCTG chr19:35385893-35386393 + 82 2.44e-09 atttattttt tgagacagagtcttgc tct chr5:160008634-160009134 - 1 3.37e-09 TATTTATTTT TGAGACAGAGTCTCAG chr5:32367212-32367712 - 9 1.57e-08 TTATTATTTT TGAGATGGAGTTTCAC TCTTGTCG chr19:40103557-40104057 - 5 7.19e-08 TTATTTATTT TGAGACAGAGCTTTGC TCTT chr1:235862575-235863075 - 6 7.65e-08 TTGTTTGTTT TGAGATGGAGACTTGC TGTGT chr2:128227805-128228305 - 5 1.07e-07 TTATTTATTT TGAGACTGAGTCTGGC CCTG chr12:27710695-27711195 - 61 2.99e-07 CCAGAGAAGA CGAGACAGACACTCAC GCAGGCTAGG chr1:169893868-169894368 + 9 3.14e-07 CGCCGCGA CGATACCGAGTTTCAC TCACTGCCCC chr19:48390561-48391061 - 30 4.94e-07 AGGCCTAGTC TGGGACGGAGCCTCGG GCTGGAGTAG chr1:226122457-226122957 - 45 6.83e-07 GCCTCCGTCA CGCGACAGAGACTCAG AAAGCGCCCA chr1:148264843-148265343 - 73 8.66e-07 TCCAGCGATC CGAGTTCGAGTCTCGG TGGAACCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGACVGAGTCTCRC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:72580220-72580720 4.4e-10 73_[+4]_11 chr1:6404484-6404984 8.1e-10 8_[-4]_76 chr10:35197187-35197687 8.1e-10 82_[+4]_2 chr18:48873499-48873999 2.4e-09 82_[+4]_2 chr19:37918651-37919151 2.4e-09 4_[-4]_80 chr19:35385893-35386393 2.4e-09 81_[+4]_3 chr5:160008634-160009134 3.4e-09 [-4]_84 chr5:32367212-32367712 1.6e-08 8_[-4]_76 chr19:40103557-40104057 7.2e-08 4_[-4]_80 chr1:235862575-235863075 7.6e-08 5_[-4]_79 chr2:128227805-128228305 1.1e-07 4_[-4]_80 chr12:27710695-27711195 3e-07 60_[-4]_24 chr1:169893868-169894368 3.1e-07 8_[+4]_76 chr19:48390561-48391061 4.9e-07 29_[-4]_55 chr1:226122457-226122957 6.8e-07 44_[-4]_40 chr1:148264843-148265343 8.7e-07 72_[-4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGACVGAGTCTCRC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGACVGAGTCTCRC width=16 seqs=16 chr10:72580220-72580720 ( 74) TGAGACAGAGTCTCAC 1 chr1:6404484-6404984 ( 9) TGAGACGGAGTCTCGC 1 chr10:35197187-35197687 ( 83) TGAGACGGAGTCTCGC 1 chr18:48873499-48873999 ( 83) TGAGACGGAGTTTCGC 1 chr19:37918651-37919151 ( 5) TGAGACCGAGTCTCGC 1 chr19:35385893-35386393 ( 82) TGAGACAGAGTCTTGC 1 chr5:160008634-160009134 ( 1) TGAGACAGAGTCTCAG 1 chr5:32367212-32367712 ( 9) TGAGATGGAGTTTCAC 1 chr19:40103557-40104057 ( 5) TGAGACAGAGCTTTGC 1 chr1:235862575-235863075 ( 6) TGAGATGGAGACTTGC 1 chr2:128227805-128228305 ( 5) TGAGACTGAGTCTGGC 1 chr12:27710695-27711195 ( 61) CGAGACAGACACTCAC 1 chr1:169893868-169894368 ( 9) CGATACCGAGTTTCAC 1 chr19:48390561-48391061 ( 30) TGGGACGGAGCCTCGG 1 chr1:226122457-226122957 ( 45) CGCGACAGAGACTCAG 1 chr1:148264843-148265343 ( 73) CGAGTTCGAGTCTCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGACVGAGTCTCRC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.3749 E= 5.9e-010 -1064 -23 -1064 186 -1064 -1064 177 -1064 208 -223 -223 -1064 -1064 -1064 167 -172 218 -1064 -1064 -172 -1064 147 -1064 -14 86 -65 35 -172 -1064 -1064 177 -1064 228 -1064 -1064 -1064 -1064 -223 167 -1064 -14 -123 -1064 174 -1064 135 -1064 28 -1064 -1064 -1064 228 -1064 135 -223 -14 86 -1064 109 -1064 -1064 135 -23 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGACVGAGTCTCRC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 16 E= 5.9e-010 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.875000 0.062500 0.062500 0.000000 0.000000 0.000000 0.937500 0.062500 0.937500 0.000000 0.000000 0.062500 0.000000 0.812500 0.000000 0.187500 0.375000 0.187500 0.375000 0.062500 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.062500 0.937500 0.000000 0.187500 0.125000 0.000000 0.687500 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.062500 0.187500 0.375000 0.000000 0.625000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGACVGAGTCTCRC MEME-4 regular expression -------------------------------------------------------------------------------- [TC]GAGAC[AG]GAGT[CT]TC[GA][CG] -------------------------------------------------------------------------------- Time 2955.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 width = 50 sites = 3 llr = 191 E-value = 1.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::37::3::::::::::::::::::::::::::::::::::aa:a::a: pos.-specific C :::::a::a:::a:7:a:::a7a7:::3:a::7:::::::a::::::::: probability G aaa73::7:a:::a:a:::::::::aa:a:::::a:aa:a:a::::a::a matrix T ::::::a:::aa::3::aaa:3:3a::7::aa3a:a::a:::::a::a:: bits 2.3 * ** *** * ** * * * **** ** 2.1 * ** *** * ** * * * **** ** 1.8 *** ** ****** ****** * *** **** ***************** 1.6 *** ** ****** ****** * *** **** ***************** Relative 1.4 *** ** ****** ****** * *** **** ***************** Entropy 1.1 *** *** ****** ****** * ******** ***************** (91.9 bits) 0.9 ************************************************** 0.7 ************************************************** 0.5 ************************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel GGGGACTGCGTTCGCGCTTTCCCCTGGTGCTTCTGTGGTGCGAATAGTAG consensus AG A T T T C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chr1:144412467-144412967 + 48 2.13e-30 tgtgatagta ggggactgcgttcgcgctttcccctggTGCTTCTGTGGTGCGAATAGTAG GTG chr1:145281053-145281553 + 2 8.07e-29 a gggaactacgttcgcgctttctcttggTGCTTCTGTGGTGCGAATAGTAG GTGAGCCGTA chr1:148522537-148523037 + 3 2.46e-28 tg gggggctgcgttcgtgctttcccctggCGCTTTTGTGGTGCGAATAGTAG ATGAGCCGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:144412467-144412967 2.1e-30 47_[+5]_3 chr1:145281053-145281553 8.1e-29 1_[+5]_49 chr1:148522537-148523037 2.5e-28 2_[+5]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG width=50 seqs=3 chr1:144412467-144412967 ( 48) GGGGACTGCGTTCGCGCTTTCCCCTGGTGCTTCTGTGGTGCGAATAGTAG 1 chr1:145281053-145281553 ( 2) GGGAACTACGTTCGCGCTTTCTCTTGGTGCTTCTGTGGTGCGAATAGTAG 1 chr1:148522537-148523037 ( 3) GGGGGCTGCGTTCGTGCTTTCCCCTGGCGCTTTTGTGGTGCGAATAGTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30600 bayes= 12.9751 E= 1.4e-006 -823 -823 176 -823 -823 -823 176 -823 -823 -823 176 -823 69 -823 118 -823 169 -823 18 -823 -823 176 -823 -823 -823 -823 -823 227 69 -823 118 -823 -823 176 -823 -823 -823 -823 176 -823 -823 -823 -823 227 -823 -823 -823 227 -823 176 -823 -823 -823 -823 176 -823 -823 118 -823 69 -823 -823 176 -823 -823 176 -823 -823 -823 -823 -823 227 -823 -823 -823 227 -823 -823 -823 227 -823 176 -823 -823 -823 118 -823 69 -823 176 -823 -823 -823 118 -823 69 -823 -823 -823 227 -823 -823 176 -823 -823 -823 176 -823 -823 18 -823 169 -823 -823 176 -823 -823 176 -823 -823 -823 -823 -823 227 -823 -823 -823 227 -823 118 -823 69 -823 -823 -823 227 -823 -823 176 -823 -823 -823 -823 227 -823 -823 176 -823 -823 -823 176 -823 -823 -823 -823 227 -823 -823 176 -823 -823 176 -823 -823 -823 -823 176 -823 227 -823 -823 -823 227 -823 -823 -823 -823 -823 -823 227 227 -823 -823 -823 -823 -823 176 -823 -823 -823 -823 227 227 -823 -823 -823 -823 -823 176 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 3 E= 1.4e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRRCTRCGTTCGYGCTTTCYCYTGGYGCTTYTGTGGTGCGAATAGTAG MEME-5 regular expression -------------------------------------------------------------------------------- GGG[GA][AG]CT[GA]CGTTCG[CT]GCTTTC[CT]C[CT]TGG[TC]GCTT[CT]TGTGGTGCGAATAGTAG -------------------------------------------------------------------------------- Time 3640.46 secs. ******************************************************************************** ******************************************************************************** MOTIF SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 width = 31 sites = 155 llr = 1374 E-value = 2.3e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 Description -------------------------------------------------------------------------------- Simplified A 1122:32111213213131122121142131 pos.-specific C 3342462333243:21433:4:261231341 probability G 6735616546643865426856618737528 matrix T ::1:1::11:1:2::1:2:1:11111::11: bits 2.3 2.1 1.8 1.6 Relative 1.4 Entropy 1.1 * (12.8 bits) 0.9 * * 0.7 ** ** * * * * * 0.5 ** *** * * *** **** **** * 0.2 ** ********* **** *********** * 0.0 ------------------------------- Multilevel GGCGGCGGGGGCAGGGCAGGGGGCGGAGGCG consensus CCGACAACCC GC CAGCC CA A G CA sequence C G T C G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:244970713-244971213 + 47 1.17e-08 CCAGGCTGTG GGCCCCGGGGGGTGGCCTGGGTGAGGAGGAG TTCTGGCCGC chr19:40605303-40605803 + 11 1.42e-08 acgctgaggc ggtggcgcgggcggaagcggcggcgcgggcg gaggcggCAG chr1:45521526-45522026 + 11 2.94e-08 CCACCCGAGC GCGGGCGGGCCCCGGACAGGAGGAGGAAGAG GCAACAGGCA chr13:40770980-40771480 - 28 5.89e-08 GCGCAAAGGG GGAGGAAGGCGCCAGGCCGGAAGCGGAAGAG AGGGCGGGGA chr17:80414977-80415477 + 26 8.24e-08 CCATGGCCCT GGAGGCGGCGGGAGGGCCGCCGGAGGAAACG CTGTCACTGT chr12:56158249-56158749 + 17 1.85e-07 GAGACGGGTG GGGGGCGAGGAGAAGGCAGGGGTAGGAGGCA AAGGGAATCT chr1:116909732-116910232 + 54 2.93e-07 GGCCCGGCCG GCTggaggagggagggaaggaggcgggaggg agcgagcgga chr5:38556773-38557273 - 7 3.41e-07 TGTTTGCAGC GGCAGCAGCGGCCGCATTCGGGGAGGCGCGG TCCTCC chr12:123601738-12360223 - 11 3.96e-07 GAAAGGCGTC CGCGGGACGGTGGAGGCAGGCGGCGGGGCAG GCCTGGGGAG chr22:46013715-46014215 - 35 4.59e-07 CAGGAAGGCA GAGGGAACGGGCAGGCCCGGAGGAGCAGGCG GGAATGTGGA chr19:5690219-5690719 - 53 4.59e-07 GCCATGGCTG CGGACAGCGACGGGGAGAAGGGGCGGAGGTG AGTACCGGCT chr6:139374281-139374781 + 65 4.59e-07 GCCGAGGTCT CGCAGCGGCCGCTGGGGCAGATTCGGAGCCG TTCCC chr19:10416378-10416878 + 30 4.59e-07 CCGGGGAAGC CCCCGCGGGAGGAAGGGTGGGGGCTGGGGCG ACCCGGGCCC chr6:158644299-158644799 + 20 6.15e-07 CGGGCAGAAT GGGGCCGGGCGGAGCGCCGGCGACCGGGAAG CTCAGGCCGT chr5:138032732-138033232 + 68 6.15e-07 ACGCAGACGC GGAACAGGGGGAGAGAGTGGCGACAGAGGCG GC chr18:31042314-31042814 - 33 7.10e-07 GCCAGATCTC GCCGGATAGGGCTGGGGTGGGGACGGGGGTG GATCCGCCCT chr13:111153224-11115372 + 15 8.18e-07 GGCTAGGGTA GAGACCGAAGACTGGACAGGAGGAGGCGGCG GTGGCCGCGC chr19:40420941-40421441 - 50 9.41e-07 CATGGAGAGA GGCGCAGGGGGCTGGACGGTGACCCGAGGGG CCAGCGGGGC chr1:26695348-26695848 - 45 1.08e-06 CCTTCACAAA GGAGGAGGGGAGAGAACAAGCCGCGGCGGCG GCAGGCCCTC chr4:118888609-118889109 + 55 1.24e-06 GCACAAATTC GCAGCAggcggctggggcggcggctggggca gcggctgcag chr7:118184048-118184548 + 27 1.24e-06 GCTGGCCGCC GCGGGCGTGAGCCGGGGTCGCGGAGAGGCCG CGGTCGGGGA chr1:26169662-26170162 - 66 1.24e-06 CCAA GGGGCCAGGAGCAGGGCAGGGAGCACACGTG TGAGCACTTC chr9:37800488-37800988 + 35 1.42e-06 TTTCCCGGTC CCCGGCGGACGGTGGCCGAGGGGCGGCGCGG GTTTCCAGCC chr20:58650942-58651442 + 45 1.86e-06 AGCGTCGCAG GGGGGCACTCGCGAGGGACGGACAGGAAGAG GGCCAGGGGG chr1:226939471-226939971 + 16 1.86e-06 TAGCCTGAAG GGCCCCGGCCGAAGGGCCGGAAGTGGAAGTG CGCGGCCTTG chr10:14878176-14878676 + 59 1.86e-06 GACTAACCAT GGCCCACGGGGCTGCGGTAGCTGCGGAACCG TACCCGACAG chr19:10252045-10252545 + 57 2.12e-06 TCGGCCTACC GGCAGCCAGGTGAGGCCAGGGGCTGGAGGCG TGGTCGAAGG chr19:34134473-34134973 - 30 2.42e-06 GCAGCCGGAG GGGCGCGCAGGAGGGTCCGGGGCAGGGGCCG GGAAGACTGG chr5:73216009-73216509 + 68 2.42e-06 CCTGGAGCGC GGGAGCCAGGACGGCGCAGGCAGCTGGGGAG GC chr5:14664164-14664664 - 59 2.42e-06 CGACCGGACG AGCGGCGGGGAGCGTCCTGGGTGAGGAGGAG GAAGTCTGGT chr22:17368354-17368854 - 63 2.42e-06 AGATCGG GAAGCCGGGGACTGTGCTCGGAGGGGAGGAG ACCCCCACGC chr7:106009421-106009921 + 9 2.42e-06 TCCCGCAG GGAGGAGGGCGGCGTGGAGGAGGCGGGCGCC CCCTGCTGCC chr1:236064843-236065343 + 64 2.42e-06 CCGCAAACCC GGTCCCGCGGCCAGGACAGAGGAAGGCGGGG ATGTAA chr2:159712442-159712942 + 70 2.75e-06 TAGTTCGGGA CCAGGCCGCGAGTGGGGGAGGGGAGGAAACG chr10:84139432-84139932 + 34 2.75e-06 GGGACCGCTG GGTGCGGGGGGAAGGGCTGGAAGCAGCGGTG CTGCTGGCTG chr1:53220314-53220814 - 14 2.75e-06 TGAGGGGAGG CCGCCCGCCGCGGGGACACGGAGGGGAGGTG GCGAGGGTCT chr13:113208505-11320900 - 14 3.13e-06 AACCAACCTG CGCACCCGCGGCGGGGCCGGGGGCGCCAGGA CCCAGACGGA chr19:58519581-58520081 + 49 3.13e-06 TTACCCCGGC GGAACGGAGGCCTGCGGTCGCGGCGGCGCAG GGGAAACCCT chr4:105708399-105708899 - 51 3.13e-06 CGTTTCCGAA GGGACCACCGGGAACAGACGGATCGGCAGGG CGGGGCGGAA chr6:125956702-125957202 + 60 3.13e-06 gctctaggcc gcgaggggcgggtgcaatggcggaggAACAG GTGAACCGCA chr1:228486611-228487111 - 52 3.13e-06 GCGGTAGCTC GCCCGCGTGGGCTGGGGACGGGGCGGGAAAT GGCCTGCGTG chr3:179323446-179323946 - 54 3.13e-06 CGGAGGTCAC GAAGCCGCCGGGCAGGGCCGCAGCGCCAGCG AGGACCCAGG chr10:7788129-7788629 + 11 3.13e-06 AGGAGGAGAT GGGCGCGGGGGCAGATGTGGGGTCGCAGGGC CTAGCTGGGC chr12:53501157-53501657 + 24 3.13e-06 CTGCAGTCAC GGTGGCGCCCGCGGGGACGGAGGAGGGAATG AGTGAAGAGG chr15:65517340-65517840 + 59 4.03e-06 CCTCGGCGGC GGCGCCGGTGACAACCCAGGCGGCGAACGCG GCACTAAGAA chr11:62880963-62881463 + 1 4.03e-06 . GGCGGAAGACGAGGCGGAGGCGGCAGCCGCG GCTAAGTTCA chr3:150603320-150603820 - 1 5.16e-06 CGTAGCCAAT GGCGCCGAGCAGAGGCGCGGCGGGGTGGCCG chr1:225653528-225654028 - 44 5.16e-06 CAACTCCGCA GGAATCGCTGGGCGCAGCCGCGGCGAGGGCG GGCAGTTGGG chr19:35154706-35155206 - 50 5.16e-06 TGGGGAGACT GAGGCAGGCGGGCGGGAGCGAGGCAGAGCGG CCCACTGTAG chr18:12991355-12991855 - 45 5.16e-06 TCAGCTCAGA GGCTGCGCCAGGCGCAGAGGCGCGGGAAGCG CGGCAGTCCC chr2:199955403-199955903 + 36 5.83e-06 CCTCGGCCTG GGCTGCGTGCTGGAGAGCGGGGACGGGGCCG ACTCACCAGA chr1:235327692-235328192 - 4 5.83e-06 GGTACCAGTC GCCGCCGCGGGAGGAGGAGGAGCCGGAGCCT CTG chr18:11688935-11689435 + 67 6.58e-06 CTGTATTTAC GGTAGCGAGGGCTGGACCGGCGGCGGCATTT ACG chr5:139293711-139294211 - 6 6.58e-06 ACATACGCAA CGCGGAGGGAGGCAGAGCGGGAGCGAGCAAG AAAGG chr1:173714793-173715293 + 25 7.41e-06 gaggaggcag agaggagtggagggcggagtagacggaggag gCTGCTGCAG chr5:57173996-57174496 + 32 7.41e-06 CCGTCCTCTA GGCTCCACGCCCGAGCCCGGGGGAGGAGGGG AGTGCCCGTG chr12:93677295-93677795 - 23 7.41e-06 AGCGGGGCGG GGAAGCCCCCGCAGGGCCCAGGTCGCAGACG CTACAATGCA chr1:231422394-231422894 + 28 8.34e-06 GAGGGCGCCA GCCGCAAGCGGGTAGCGGAGCGAAGGCGGCG TAATCATGGC chr1:226308718-226309218 + 29 9.38e-06 ACAAAGGCGG CGACGCGGCGGCAACACCGGAGTGGGAGGAC TAGGGGACCA chr10:122980293-12298079 - 38 9.38e-06 TTTCCTGCCG CGGGGAGGCCACAGAGGACGCAGAGGCCTCG TTTCCGCGGC chr12:12611636-12612136 - 22 9.38e-06 CGCTCTGGAG AGCCGCCGAGACCGGAGGGTGGGCGGGAGCG CTGCACACGG chr1:93078930-93079430 - 59 1.18e-05 AAAGCCGCGG GGGGGCAGGGACTGCGCGGCGAGCGCGGAGG AACACCGCGC chr19:35643322-35643822 + 13 1.18e-05 GATACCTACT GGGGCAGTGGCCTGGGCGGGGAGCCGCGCAC GGACTGTACC chr15:70892216-70892716 - 46 1.18e-05 TGGCTCCTGG GGAGCAGCGCAGGGAGGAGGAGGAGGAAGAT ATCAAAGAGC chr3:53347430-53347930 - 32 1.32e-05 CGCCGGAACC CGGCGCCCGGAGCGTGCGCGCGGCGGACCAG AATGGCTGAC chr1:241423928-241424428 + 30 1.32e-05 gccgggctga ggcacctgccggcggggtagcagggcagtcg agcacggagg chr6:85678987-85679487 + 4 1.32e-05 GCC CCCAGCGGAGGCCGCCGGAGGAGCGGGCGAG CCCTGGCCGC chr12:56041873-56042373 - 53 1.48e-05 CTTGGAGGCA CGGACCGGAGAGAGGAGACGGTGCCTGGCAG GGCCCTCCTA chr21:43728535-43729035 + 42 1.48e-05 AGCTTGTGTC GCGGGCGGCAGGGGGAAGGGAGTCGGAGAGC TCCTGCGGTC chr19:39532429-39532929 - 56 1.85e-05 TGGCGTCAGC GACGTACTGCGGGGGGCAGTCGGCGGCGGGG TTCGGGTGCA chr12:109477284-10947778 + 37 1.85e-05 CGCTATTTCA GCTGCCAGAGGGGAGGCAAGGTGTGGGGAAG TTTTCCTTCC chr19:33080927-33081427 + 30 1.85e-05 GCCTGCCAAG GCCGCCGTAGCGAGGGGGCGGGGCCCGGAAG AGCAGGATGG chr1:109484050-109484550 - 15 1.85e-05 GGCAGAGGTT GGCAGGGTGGGCTGCGAGCGGTGAGCAGGCG CTAGGACCCG chr22:19432263-19432763 + 37 1.85e-05 CTCAGCAGGG GGCACCGCGGGCCGGACTGTGGAGGGGCGCA CGCCCGGAAG chr17:41688834-41689334 + 51 2.07e-05 CTATGGGAAA GGTCGCGGGCCCGGGTGGGGCAGCGGGGCCT TCCGGGCCCG chr19:36604937-36605437 + 65 2.07e-05 GCCGCAATAG GGCGGCCGTGGGTGCAAACGGAGGGGAGCGC CGGCA chr2:223957155-223957655 - 6 2.07e-05 GAACCCGGAA CGCGGAACGCGAAGAGAAGGCTGGGGCGGAG ACAGC chr6:35468269-35468769 - 50 2.30e-05 AGAAATGCCC CGCGGCGCAGGTGGCGCAAGGGTCCGCGGCG CGGCCTACAG chr1:150010424-150010924 - 51 2.30e-05 ACCAGCCGCC GGAGCCGGAGTGGCGACCGGGTGCGGAGTGG GCAAAAAGCC chr14:55051609-55052109 + 59 2.30e-05 TTGCGGAGCC CGCGGGCGCGGCCAAGCGGGAAGCGGGCGCG GTGACCGAGG chr1:40257906-40258406 + 12 2.56e-05 TGTGACACTG CCAGCAGCGCGCAGAGGGAGGGATGGGGGCG GGTATCGGCG chr1:212665203-212665703 - 36 2.56e-05 TCCTCCGCGG GGCAGCCTCGGGGAGGGTGGCTGCAGGGCCC GGAGTCGCCT chr1:42335255-42335755 + 25 2.56e-05 AGTGGCGTCT GGGAGCAAAGGCGGCGGAGGCAACCCCGCAG TTGAGGACAG chr1:109100119-109100619 - 19 2.85e-05 ATAAGATCAA AGTGTAAGCGGGAGGAGGGGCGCAGGGGTGG GCGCACGCAC chr6:24774900-24775400 + 27 2.85e-05 GTGGGCAAGA GGCGGCAGGAAGTGGGTACGCAGGGGCGCAA GGCGCACAGC chr9:128771792-128772292 + 7 2.85e-05 GCTAAC GCGGGCGGCGGCGGCAGAAGGTTCCGGGGAC CGGCGGGCGG chr1:121519147-121519647 - 55 2.85e-05 GCCGAGCTTG GGCGCGCGGCGGCGAGAAGGCACTGGAGGAG GAGAAGCAGC chrX:72276879-72277379 + 48 3.17e-05 CGAAACCTCG GGCAGCCCCGGCCGGGGGAGGATGGAGGCGG ATACGTCCTA chr10:72354688-72355188 + 23 3.17e-05 GGAACCAGAA CGCGGAACCAGGGAGGGGGAGGCCGGGCGAG CGAAGGGCTG chr19:39435524-39436024 - 42 3.17e-05 GCCAGGGTCT GGGAGAGGTCGGTGGGCAGGAATCTAGGGGG TAACATGGGA chr17:7252304-7252804 + 19 3.17e-05 CAGAGGGCGC CAGAGCAGGGACCGGACGCGAGTTGGAGATG TTGGACTCGC chr17:45161101-45161601 - 62 3.17e-05 CCTGAAGT GGCGGCGCCGGGAGACGGCGGGAAGTGGGAC CGGGGGCCAG chr17:18780992-18781492 - 31 3.17e-05 GCCACGTCAG CGCAGCAGCGTACGGGTCCGGGTCGGAACTG AGGCGACCCG chr11:119095019-11909551 + 32 3.17e-05 GGTACACTGG CGCGCCGGCGCCAACGCGCTCGGCGTAGTGG CCCTTCCGCA chr1:235128496-235128996 + 42 3.52e-05 GCTGAGCGTG GACGGTGGCGGCAGGGACCGCGAAGGAGCGG TGGGCCACGA chr1:16644649-16645149 - 5 3.90e-05 AGGGCTGGGA GCATCCCCGGGGCAGGCGGAGGTCGGAGGTG GTGA chr15:72783653-72784153 - 66 4.32e-05 AAGG GGGTGCAGCGCCCGGACTGGCACAACCGCCG TTGTCCCACC chr18:46173613-46174113 + 70 4.32e-05 GGCGCCTTCA CGCCCCGCGGTCTGCAGCGGGAGGAGCGCGG chr6:89352181-89352681 + 14 4.78e-05 CCTGTACTTC CCGGGCAGGCGGCGGTCTCGCGTAGAGCGCG AAACCAGGAG chr1:224113984-224114484 - 46 4.78e-05 CGCCTGGGAC CCCGGCTGCGGGTGCTGTGGCGCGGGCGGTG GAGGCTGTCG chr19:40055813-40056313 - 42 4.78e-05 CGAGAGCGAG GCGCTCAGAGGAGGAACCCGGGGCGCAGACG GAATCTGCCA chr6:100880991-100881491 - 8 4.78e-05 CCCCGGCAAG CGCGGCTTGGAGGGCGGACGGGGCGCGGCGA TACAGCT chr15:49620772-49621272 - 65 4.78e-05 GAGCC CGAGCCACGCGCCGGGCCGTGATCGCGCACG GACCAGACGG chr19:40634413-40634913 - 59 5.28e-05 TCGGCCACTA GGGGGCGCAGCCGGCTTGGGCTGCGCCGGCG CGCGGTGGCC chr19:34734121-34734621 + 60 5.28e-05 GCTGAGGACT CCGGCCAGTATGAGTCCCGGGGGCGGCGGCG gggctcaggc chr1:227734916-227735416 - 67 5.28e-05 GTC CCCGGCGTCGGCCAGGCTCCGGGCCGGGTAG CCTTCGTCTC chr10:17201440-17201940 - 39 5.28e-05 AGGCTGAGGG AGCGGCGCGATGGAGGGAGGAGGAGCGACGG ACCGGCAGGC chr19:33521479-33521979 + 27 5.28e-05 GCCCCTCTCC ACGCCAGCGGGAAAGAGCGAGGGAGGCGCAG CACTCACCCG chr7:97872035-97872535 + 43 5.84e-05 CCCTTCCTTC CGGAGCAGCCCCAGGGCACGCGAGGAGGATG CTGGCGCGGG chr19:32405176-32405676 - 5 6.44e-05 GTTCGCCTCG AGCCGCACGGCCCGGAGCAGCGGCTCCGCGG TGGT chr6:16129001-16129501 - 20 6.44e-05 TGTCACTGGT GGGACCCAGCCCCGGACTCGGAGAGGGCTGG CCCTCGAAGG chr7:100889221-100889721 + 12 6.44e-05 CCCGAGAGCA GCGCCAGGCGGACAGGGCCGCGGCTCGGCGG GGACAGGCCC chr19:40190731-40191231 - 20 7.10e-05 GCAGGGGGCG GCCCCCAAACAGCGGGCTGCGGGCGTCGGCG GGTGGTTGGA chr1:213015180-213015680 - 18 7.10e-05 GTAAACCCGC CGCGCAGCTGGCGGGACGCTGGGCCAACGAG GTCTGGGGTC chr1:27321870-27322370 + 69 7.10e-05 TCCGGGAAGT GACGCCATGGGGACGAGCGGCACCAGAGCCG G chr10:123008428-12300892 - 19 7.10e-05 AGCAGGCTGC CGGCTCGGACGGCGGCGACGCGGCAGGACAG GGCGGATAAG chr17:74203532-74204032 + 58 7.10e-05 GGGGACCCCA GGTCCGCGTGGAGGGTGTCGGGGAGGAGAAG GGGAGTGCGA chr3:183099152-183099652 + 48 7.82e-05 GTTCCTCTCC GCCGCCACCAGCAGCACCGACACCGCAGAGG CCGCCGCCAT chr1:182391384-182391884 + 28 7.82e-05 GGCTGGGCGG CGCGCCTCGCGGGGTAGCAGGGGCGGCGCGC CTCGCTTGCG chr19:34404377-34404877 + 12 7.82e-05 GAAGGGTGCG GAGGGAGTGGGCGAGGTCCTGGGGGGAGTCG GGGTCTGAGC chr21:25607246-25607746 - 49 8.60e-05 TTCGGTTTCC GGGGGAGGAGGGCGGAGAAGGACTTGCGCGC GACGGTTCTC chr9:135967493-135967993 + 61 8.60e-05 CTGCCTGGAG GGGCGAGGTGGTGGGGGTGAGTGTGCAGGCg tgtgtgtgt chr12:69359627-69360127 + 57 9.46e-05 CTGGGCCCGC GCGACAGGAGCGCGGTCTCTGAGGGGAGCGG CGACCCCGCC chr15:68559603-68560103 + 33 1.04e-04 CAGCAGGTCT CCCGCAAACGCGCGCGCACGGAGAGCACAAG GCGTGTGGCT chr18:46104255-46104755 - 46 1.04e-04 GAAAAGTAGA CGTGGCGCGCACAGGAGACCCGCTGTCGGCG CGGGGGTGTC chr12:30963538-30964038 - 55 1.04e-04 CCCCCGACCT GCAGGAGACCACCGGGTTAGAGCAGGGGGTG GCGGGGGCCT chr1:223846059-223846559 - 4 1.14e-04 TCGCACGACT CGGAGCCGCCGAGGAGGTGACGGCGGCAGCC CTG chr15:69452660-69453160 - 61 1.14e-04 GACAGAGGC CATGGCGCGGGCGAGTGTAGGGCTGGCGCTG CCGGACGCGG chr4:4541871-4542371 - 25 1.14e-04 TTTTTCCTCC CGCCGCGGTAGCAGGGCGCAGGCCGGAACCT TTCTTCTCGC chr14:104815962-10481646 + 43 1.25e-04 CCCTCCCAAA AGCGCGGCCGCGAGGACGGGCGCTGCCAGCG ATTTCCTCGC chr10:47553219-47553719 - 30 1.37e-04 GTTGTGAACA GGTTTGGTGCCGCGGGCTGGGGTAGGCGGCG GTTGGGTCCG chr13:48037713-48038213 + 1 1.37e-04 . CGCGGACGCGAGGAAACCGGGGCGTGCGCAG AGGGACGAAC chr17:39980671-39981171 - 62 1.64e-04 TGGCACCC GGGGTCACGGCCTAGTCCGGGGACCGAGGCC GGGGCCTCGC chr17:51153343-51153843 - 61 1.79e-04 TGAACTCCG GCTGCAGCCGCCAGCACCCGAAACGCGCCCG GGACCCACGT chr6:11093611-11094111 + 22 1.79e-04 GGGCCTGGGG CGGAGAAGCCGCTACAGCCGCGGCCGGGCGA CGCTGACATC chr19:37655893-37656393 - 3 1.95e-04 CCAGGCACTC GGTCCAGGTACGCGGGGGCGCGGCGGCCGTC AC chr17:40140224-40140724 + 1 1.95e-04 . cacacaGCGGGATGGCCGAGCGCCGCACGCG TAGCACGCCG chr19:15418549-15419049 + 5 1.95e-04 GAGG GCAGCGACCCTGAGGCGACGGGCCAGCGGCG CCATTTTGTG chr3:185498751-185499251 + 67 2.13e-04 CACTCCGGGA CGCAGCGGCGGGCGGACTGAGCCCGCGGAGC ACG chr6:116100831-116101331 - 70 2.32e-04 . CGCCGCAGGCCCCGGGCAGCGTCCGCCGTTG CCCAAACCTG chr10:5977561-5978061 - 26 2.32e-04 TCCCAGAGCA CGACGAGCGCGGAGGACCGGGAGGCTCCCGG GCTTGCGTGG chr19:36837972-36838472 - 10 2.53e-04 GGGGGCGAGC GATCGCGATGGGAGCAGTGGATGCGAGAGTG AAATTGATG chr1:1375002-1375502 - 46 2.53e-04 TCGGGGGCCG CGAGGACGCCAGCGGGCGCTGTGCGTAGGAA CCGCCGGGTG chr1:24848037-24848537 - 63 2.53e-04 CGGGGGA GGCGCGGAGGTGTCGGTTCGCAGCGGCGCCG GGGAGCGTCC chr19:39390632-39391132 + 35 2.75e-04 GGCGCCATAG CGACGAGGCGACGGCAGCCCGGACGGGGTCC TAGCGGGACC chr15:66497525-66498025 - 55 2.75e-04 CGCTCGGTTT CCGGGAGTCGGCGGCGATGGCGTCATCACCG AGTGCCGGGC chr6:96521631-96522131 - 9 2.99e-04 CCGCCATCAC GGCCTGACTCGCAGTAGACGCGGAGGAACTG CAGACACG chr10:102399397-10239989 - 38 2.99e-04 CCGCCAGCAG CGCGCGCGCGTCCGCGGTGACGCCGTAGTCG AGTAGGGCTC chr8:89984200-89984700 + 19 3.25e-04 CGCTTCCGCA GCGTCCCCGGGCAGGAACGGACGCGACGCAG GAATCACCCG chr18:11980504-11981004 + 26 3.52e-04 TGAAGGGACG CCCGGCACCACGTGCGCGGGGATCCGCGGAC GGGACGCTCC chr19:50804217-50804717 - 60 4.48e-04 CTGAAGGGTT CGAGGCTGCGACGGGAGCGGCCATGTAGTCG CGTGGAAAGG chr19:39480715-39481215 - 9 5.24e-04 CACCTGATCT GGGGCCCGGCGGGGCGGCGTCGCCAACCTCG TGCACAGT chr6:30907738-30908238 + 20 5.66e-04 CCAGCCGGTT ACACGCGCCGTTAGCAGCGTGGGCGGAGTTG GTTCTGCCTT chr10:73246873-73247373 + 26 6.59e-04 CCTCGTCGGA CCTCGCCGTCGGAGGCCTCGCGTCGCACGCC CAGCACCCGG chr1:232630368-232630868 + 14 7.10e-04 AACTTGGGAC AGACGCGGCGGCCGGGCGGTCGGATCCGTGA GCCTCGGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:244970713-244971213 1.2e-08 46_[+6]_23 chr19:40605303-40605803 1.4e-08 10_[+6]_59 chr1:45521526-45522026 2.9e-08 10_[+6]_59 chr13:40770980-40771480 5.9e-08 27_[-6]_42 chr17:80414977-80415477 8.2e-08 25_[+6]_44 chr12:56158249-56158749 1.8e-07 16_[+6]_53 chr1:116909732-116910232 2.9e-07 53_[+6]_16 chr5:38556773-38557273 3.4e-07 6_[-6]_63 chr12:123601738-12360223 4e-07 10_[-6]_59 chr22:46013715-46014215 4.6e-07 34_[-6]_35 chr19:5690219-5690719 4.6e-07 52_[-6]_17 chr6:139374281-139374781 4.6e-07 64_[+6]_5 chr19:10416378-10416878 4.6e-07 29_[+6]_40 chr6:158644299-158644799 6.1e-07 19_[+6]_50 chr5:138032732-138033232 6.1e-07 67_[+6]_2 chr18:31042314-31042814 7.1e-07 32_[-6]_37 chr13:111153224-11115372 8.2e-07 14_[+6]_55 chr19:40420941-40421441 9.4e-07 49_[-6]_20 chr1:26695348-26695848 1.1e-06 44_[-6]_25 chr4:118888609-118889109 1.2e-06 54_[+6]_15 chr7:118184048-118184548 1.2e-06 26_[+6]_43 chr1:26169662-26170162 1.2e-06 65_[-6]_4 chr9:37800488-37800988 1.4e-06 34_[+6]_35 chr20:58650942-58651442 1.9e-06 44_[+6]_25 chr1:226939471-226939971 1.9e-06 15_[+6]_54 chr10:14878176-14878676 1.9e-06 58_[+6]_11 chr19:10252045-10252545 2.1e-06 56_[+6]_13 chr19:34134473-34134973 2.4e-06 29_[-6]_40 chr5:73216009-73216509 2.4e-06 67_[+6]_2 chr5:14664164-14664664 2.4e-06 58_[-6]_11 chr22:17368354-17368854 2.4e-06 62_[-6]_7 chr7:106009421-106009921 2.4e-06 8_[+6]_61 chr1:236064843-236065343 2.4e-06 63_[+6]_6 chr2:159712442-159712942 2.8e-06 69_[+6] chr10:84139432-84139932 2.8e-06 33_[+6]_36 chr1:53220314-53220814 2.8e-06 13_[-6]_56 chr13:113208505-11320900 3.1e-06 13_[-6]_56 chr19:58519581-58520081 3.1e-06 48_[+6]_21 chr4:105708399-105708899 3.1e-06 50_[-6]_19 chr6:125956702-125957202 3.1e-06 59_[+6]_10 chr1:228486611-228487111 3.1e-06 51_[-6]_18 chr3:179323446-179323946 3.1e-06 53_[-6]_16 chr10:7788129-7788629 3.1e-06 10_[+6]_59 chr12:53501157-53501657 3.1e-06 23_[+6]_46 chr15:65517340-65517840 4e-06 58_[+6]_11 chr11:62880963-62881463 4e-06 [+6]_69 chr3:150603320-150603820 5.2e-06 [-6]_69 chr1:225653528-225654028 5.2e-06 43_[-6]_26 chr19:35154706-35155206 5.2e-06 49_[-6]_20 chr18:12991355-12991855 5.2e-06 44_[-6]_25 chr2:199955403-199955903 5.8e-06 35_[+6]_34 chr1:235327692-235328192 5.8e-06 3_[-6]_66 chr18:11688935-11689435 6.6e-06 66_[+6]_3 chr5:139293711-139294211 6.6e-06 5_[-6]_64 chr1:173714793-173715293 7.4e-06 24_[+6]_45 chr5:57173996-57174496 7.4e-06 31_[+6]_38 chr12:93677295-93677795 7.4e-06 22_[-6]_47 chr1:231422394-231422894 8.3e-06 27_[+6]_42 chr1:226308718-226309218 9.4e-06 28_[+6]_41 chr10:122980293-12298079 9.4e-06 37_[-6]_32 chr12:12611636-12612136 9.4e-06 21_[-6]_48 chr1:93078930-93079430 1.2e-05 58_[-6]_11 chr19:35643322-35643822 1.2e-05 12_[+6]_57 chr15:70892216-70892716 1.2e-05 45_[-6]_24 chr3:53347430-53347930 1.3e-05 31_[-6]_38 chr1:241423928-241424428 1.3e-05 29_[+6]_40 chr6:85678987-85679487 1.3e-05 3_[+6]_66 chr12:56041873-56042373 1.5e-05 52_[-6]_17 chr21:43728535-43729035 1.5e-05 41_[+6]_28 chr19:39532429-39532929 1.9e-05 55_[-6]_14 chr12:109477284-10947778 1.9e-05 36_[+6]_33 chr19:33080927-33081427 1.9e-05 29_[+6]_40 chr1:109484050-109484550 1.9e-05 14_[-6]_55 chr22:19432263-19432763 1.9e-05 36_[+6]_33 chr17:41688834-41689334 2.1e-05 50_[+6]_19 chr19:36604937-36605437 2.1e-05 64_[+6]_5 chr2:223957155-223957655 2.1e-05 5_[-6]_64 chr6:35468269-35468769 2.3e-05 49_[-6]_20 chr1:150010424-150010924 2.3e-05 50_[-6]_19 chr14:55051609-55052109 2.3e-05 58_[+6]_11 chr1:40257906-40258406 2.6e-05 11_[+6]_58 chr1:212665203-212665703 2.6e-05 35_[-6]_34 chr1:42335255-42335755 2.6e-05 24_[+6]_45 chr1:109100119-109100619 2.9e-05 18_[-6]_51 chr6:24774900-24775400 2.9e-05 26_[+6]_43 chr9:128771792-128772292 2.9e-05 6_[+6]_63 chr1:121519147-121519647 2.9e-05 54_[-6]_15 chrX:72276879-72277379 3.2e-05 47_[+6]_22 chr10:72354688-72355188 3.2e-05 22_[+6]_47 chr19:39435524-39436024 3.2e-05 41_[-6]_28 chr17:7252304-7252804 3.2e-05 18_[+6]_51 chr17:45161101-45161601 3.2e-05 61_[-6]_8 chr17:18780992-18781492 3.2e-05 30_[-6]_39 chr11:119095019-11909551 3.2e-05 31_[+6]_38 chr1:235128496-235128996 3.5e-05 41_[+6]_28 chr1:16644649-16645149 3.9e-05 4_[-6]_65 chr15:72783653-72784153 4.3e-05 65_[-6]_4 chr18:46173613-46174113 4.3e-05 69_[+6] chr6:89352181-89352681 4.8e-05 13_[+6]_56 chr1:224113984-224114484 4.8e-05 45_[-6]_24 chr19:40055813-40056313 4.8e-05 41_[-6]_28 chr6:100880991-100881491 4.8e-05 7_[-6]_62 chr15:49620772-49621272 4.8e-05 64_[-6]_5 chr19:40634413-40634913 5.3e-05 58_[-6]_11 chr19:34734121-34734621 5.3e-05 59_[+6]_10 chr1:227734916-227735416 5.3e-05 66_[-6]_3 chr10:17201440-17201940 5.3e-05 38_[-6]_31 chr19:33521479-33521979 5.3e-05 26_[+6]_43 chr7:97872035-97872535 5.8e-05 42_[+6]_27 chr19:32405176-32405676 6.4e-05 4_[-6]_65 chr6:16129001-16129501 6.4e-05 19_[-6]_50 chr7:100889221-100889721 6.4e-05 11_[+6]_58 chr19:40190731-40191231 7.1e-05 19_[-6]_50 chr1:213015180-213015680 7.1e-05 17_[-6]_52 chr1:27321870-27322370 7.1e-05 68_[+6]_1 chr10:123008428-12300892 7.1e-05 18_[-6]_51 chr17:74203532-74204032 7.1e-05 57_[+6]_12 chr3:183099152-183099652 7.8e-05 47_[+6]_22 chr1:182391384-182391884 7.8e-05 27_[+6]_42 chr19:34404377-34404877 7.8e-05 11_[+6]_58 chr21:25607246-25607746 8.6e-05 48_[-6]_21 chr9:135967493-135967993 8.6e-05 60_[+6]_9 chr12:69359627-69360127 9.5e-05 56_[+6]_13 chr15:68559603-68560103 0.0001 32_[+6]_37 chr18:46104255-46104755 0.0001 45_[-6]_24 chr12:30963538-30964038 0.0001 54_[-6]_15 chr1:223846059-223846559 0.00011 3_[-6]_66 chr15:69452660-69453160 0.00011 60_[-6]_9 chr4:4541871-4542371 0.00011 24_[-6]_45 chr14:104815962-10481646 0.00012 42_[+6]_27 chr10:47553219-47553719 0.00014 29_[-6]_40 chr13:48037713-48038213 0.00014 [+6]_69 chr17:39980671-39981171 0.00016 61_[-6]_8 chr17:51153343-51153843 0.00018 60_[-6]_9 chr6:11093611-11094111 0.00018 21_[+6]_48 chr19:37655893-37656393 0.0002 2_[-6]_67 chr17:40140224-40140724 0.0002 [+6]_69 chr19:15418549-15419049 0.0002 4_[+6]_65 chr3:185498751-185499251 0.00021 66_[+6]_3 chr6:116100831-116101331 0.00023 69_[-6] chr10:5977561-5978061 0.00023 25_[-6]_44 chr19:36837972-36838472 0.00025 9_[-6]_60 chr1:1375002-1375502 0.00025 45_[-6]_24 chr1:24848037-24848537 0.00025 62_[-6]_7 chr19:39390632-39391132 0.00027 34_[+6]_35 chr15:66497525-66498025 0.00027 54_[-6]_15 chr6:96521631-96522131 0.0003 8_[-6]_61 chr10:102399397-10239989 0.0003 37_[-6]_32 chr8:89984200-89984700 0.00032 18_[+6]_51 chr18:11980504-11981004 0.00035 25_[+6]_44 chr19:50804217-50804717 0.00045 59_[-6]_10 chr19:39480715-39481215 0.00052 8_[-6]_61 chr6:30907738-30908238 0.00057 19_[+6]_50 chr10:73246873-73247373 0.00066 25_[+6]_44 chr1:232630368-232630868 0.00071 13_[+6]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG width=31 seqs=155 chr1:244970713-244971213 ( 47) GGCCCCGGGGGGTGGCCTGGGTGAGGAGGAG 1 chr19:40605303-40605803 ( 11) GGTGGCGCGGGCGGAAGCGGCGGCGCGGGCG 1 chr1:45521526-45522026 ( 11) GCGGGCGGGCCCCGGACAGGAGGAGGAAGAG 1 chr13:40770980-40771480 ( 28) GGAGGAAGGCGCCAGGCCGGAAGCGGAAGAG 1 chr17:80414977-80415477 ( 26) GGAGGCGGCGGGAGGGCCGCCGGAGGAAACG 1 chr12:56158249-56158749 ( 17) GGGGGCGAGGAGAAGGCAGGGGTAGGAGGCA 1 chr1:116909732-116910232 ( 54) GCTGGAGGAGGGAGGGAAGGAGGCGGGAGGG 1 chr5:38556773-38557273 ( 7) GGCAGCAGCGGCCGCATTCGGGGAGGCGCGG 1 chr12:123601738-12360223 ( 11) CGCGGGACGGTGGAGGCAGGCGGCGGGGCAG 1 chr22:46013715-46014215 ( 35) GAGGGAACGGGCAGGCCCGGAGGAGCAGGCG 1 chr19:5690219-5690719 ( 53) CGGACAGCGACGGGGAGAAGGGGCGGAGGTG 1 chr6:139374281-139374781 ( 65) CGCAGCGGCCGCTGGGGCAGATTCGGAGCCG 1 chr19:10416378-10416878 ( 30) CCCCGCGGGAGGAAGGGTGGGGGCTGGGGCG 1 chr6:158644299-158644799 ( 20) GGGGCCGGGCGGAGCGCCGGCGACCGGGAAG 1 chr5:138032732-138033232 ( 68) GGAACAGGGGGAGAGAGTGGCGACAGAGGCG 1 chr18:31042314-31042814 ( 33) GCCGGATAGGGCTGGGGTGGGGACGGGGGTG 1 chr13:111153224-11115372 ( 15) GAGACCGAAGACTGGACAGGAGGAGGCGGCG 1 chr19:40420941-40421441 ( 50) GGCGCAGGGGGCTGGACGGTGACCCGAGGGG 1 chr1:26695348-26695848 ( 45) GGAGGAGGGGAGAGAACAAGCCGCGGCGGCG 1 chr4:118888609-118889109 ( 55) GCAGCAGGCGGCTGGGGCGGCGGCTGGGGCA 1 chr7:118184048-118184548 ( 27) GCGGGCGTGAGCCGGGGTCGCGGAGAGGCCG 1 chr1:26169662-26170162 ( 66) GGGGCCAGGAGCAGGGCAGGGAGCACACGTG 1 chr9:37800488-37800988 ( 35) CCCGGCGGACGGTGGCCGAGGGGCGGCGCGG 1 chr20:58650942-58651442 ( 45) GGGGGCACTCGCGAGGGACGGACAGGAAGAG 1 chr1:226939471-226939971 ( 16) GGCCCCGGCCGAAGGGCCGGAAGTGGAAGTG 1 chr10:14878176-14878676 ( 59) GGCCCACGGGGCTGCGGTAGCTGCGGAACCG 1 chr19:10252045-10252545 ( 57) GGCAGCCAGGTGAGGCCAGGGGCTGGAGGCG 1 chr19:34134473-34134973 ( 30) GGGCGCGCAGGAGGGTCCGGGGCAGGGGCCG 1 chr5:73216009-73216509 ( 68) GGGAGCCAGGACGGCGCAGGCAGCTGGGGAG 1 chr5:14664164-14664664 ( 59) AGCGGCGGGGAGCGTCCTGGGTGAGGAGGAG 1 chr22:17368354-17368854 ( 63) GAAGCCGGGGACTGTGCTCGGAGGGGAGGAG 1 chr7:106009421-106009921 ( 9) GGAGGAGGGCGGCGTGGAGGAGGCGGGCGCC 1 chr1:236064843-236065343 ( 64) GGTCCCGCGGCCAGGACAGAGGAAGGCGGGG 1 chr2:159712442-159712942 ( 70) CCAGGCCGCGAGTGGGGGAGGGGAGGAAACG 1 chr10:84139432-84139932 ( 34) GGTGCGGGGGGAAGGGCTGGAAGCAGCGGTG 1 chr1:53220314-53220814 ( 14) CCGCCCGCCGCGGGGACACGGAGGGGAGGTG 1 chr13:113208505-11320900 ( 14) CGCACCCGCGGCGGGGCCGGGGGCGCCAGGA 1 chr19:58519581-58520081 ( 49) GGAACGGAGGCCTGCGGTCGCGGCGGCGCAG 1 chr4:105708399-105708899 ( 51) GGGACCACCGGGAACAGACGGATCGGCAGGG 1 chr6:125956702-125957202 ( 60) GCGAGGGGCGGGTGCAATGGCGGAGGAACAG 1 chr1:228486611-228487111 ( 52) GCCCGCGTGGGCTGGGGACGGGGCGGGAAAT 1 chr3:179323446-179323946 ( 54) GAAGCCGCCGGGCAGGGCCGCAGCGCCAGCG 1 chr10:7788129-7788629 ( 11) GGGCGCGGGGGCAGATGTGGGGTCGCAGGGC 1 chr12:53501157-53501657 ( 24) GGTGGCGCCCGCGGGGACGGAGGAGGGAATG 1 chr15:65517340-65517840 ( 59) GGCGCCGGTGACAACCCAGGCGGCGAACGCG 1 chr11:62880963-62881463 ( 1) GGCGGAAGACGAGGCGGAGGCGGCAGCCGCG 1 chr3:150603320-150603820 ( 1) GGCGCCGAGCAGAGGCGCGGCGGGGTGGCCG 1 chr1:225653528-225654028 ( 44) GGAATCGCTGGGCGCAGCCGCGGCGAGGGCG 1 chr19:35154706-35155206 ( 50) GAGGCAGGCGGGCGGGAGCGAGGCAGAGCGG 1 chr18:12991355-12991855 ( 45) GGCTGCGCCAGGCGCAGAGGCGCGGGAAGCG 1 chr2:199955403-199955903 ( 36) GGCTGCGTGCTGGAGAGCGGGGACGGGGCCG 1 chr1:235327692-235328192 ( 4) GCCGCCGCGGGAGGAGGAGGAGCCGGAGCCT 1 chr18:11688935-11689435 ( 67) GGTAGCGAGGGCTGGACCGGCGGCGGCATTT 1 chr5:139293711-139294211 ( 6) CGCGGAGGGAGGCAGAGCGGGAGCGAGCAAG 1 chr1:173714793-173715293 ( 25) AGAGGAGTGGAGGGCGGAGTAGACGGAGGAG 1 chr5:57173996-57174496 ( 32) GGCTCCACGCCCGAGCCCGGGGGAGGAGGGG 1 chr12:93677295-93677795 ( 23) GGAAGCCCCCGCAGGGCCCAGGTCGCAGACG 1 chr1:231422394-231422894 ( 28) GCCGCAAGCGGGTAGCGGAGCGAAGGCGGCG 1 chr1:226308718-226309218 ( 29) CGACGCGGCGGCAACACCGGAGTGGGAGGAC 1 chr10:122980293-12298079 ( 38) CGGGGAGGCCACAGAGGACGCAGAGGCCTCG 1 chr12:12611636-12612136 ( 22) AGCCGCCGAGACCGGAGGGTGGGCGGGAGCG 1 chr1:93078930-93079430 ( 59) GGGGGCAGGGACTGCGCGGCGAGCGCGGAGG 1 chr19:35643322-35643822 ( 13) GGGGCAGTGGCCTGGGCGGGGAGCCGCGCAC 1 chr15:70892216-70892716 ( 46) GGAGCAGCGCAGGGAGGAGGAGGAGGAAGAT 1 chr3:53347430-53347930 ( 32) CGGCGCCCGGAGCGTGCGCGCGGCGGACCAG 1 chr1:241423928-241424428 ( 30) GGCACCTGCCGGCGGGGTAGCAGGGCAGTCG 1 chr6:85678987-85679487 ( 4) CCCAGCGGAGGCCGCCGGAGGAGCGGGCGAG 1 chr12:56041873-56042373 ( 53) CGGACCGGAGAGAGGAGACGGTGCCTGGCAG 1 chr21:43728535-43729035 ( 42) GCGGGCGGCAGGGGGAAGGGAGTCGGAGAGC 1 chr19:39532429-39532929 ( 56) GACGTACTGCGGGGGGCAGTCGGCGGCGGGG 1 chr12:109477284-10947778 ( 37) GCTGCCAGAGGGGAGGCAAGGTGTGGGGAAG 1 chr19:33080927-33081427 ( 30) GCCGCCGTAGCGAGGGGGCGGGGCCCGGAAG 1 chr1:109484050-109484550 ( 15) GGCAGGGTGGGCTGCGAGCGGTGAGCAGGCG 1 chr22:19432263-19432763 ( 37) GGCACCGCGGGCCGGACTGTGGAGGGGCGCA 1 chr17:41688834-41689334 ( 51) GGTCGCGGGCCCGGGTGGGGCAGCGGGGCCT 1 chr19:36604937-36605437 ( 65) GGCGGCCGTGGGTGCAAACGGAGGGGAGCGC 1 chr2:223957155-223957655 ( 6) CGCGGAACGCGAAGAGAAGGCTGGGGCGGAG 1 chr6:35468269-35468769 ( 50) CGCGGCGCAGGTGGCGCAAGGGTCCGCGGCG 1 chr1:150010424-150010924 ( 51) GGAGCCGGAGTGGCGACCGGGTGCGGAGTGG 1 chr14:55051609-55052109 ( 59) CGCGGGCGCGGCCAAGCGGGAAGCGGGCGCG 1 chr1:40257906-40258406 ( 12) CCAGCAGCGCGCAGAGGGAGGGATGGGGGCG 1 chr1:212665203-212665703 ( 36) GGCAGCCTCGGGGAGGGTGGCTGCAGGGCCC 1 chr1:42335255-42335755 ( 25) GGGAGCAAAGGCGGCGGAGGCAACCCCGCAG 1 chr1:109100119-109100619 ( 19) AGTGTAAGCGGGAGGAGGGGCGCAGGGGTGG 1 chr6:24774900-24775400 ( 27) GGCGGCAGGAAGTGGGTACGCAGGGGCGCAA 1 chr9:128771792-128772292 ( 7) GCGGGCGGCGGCGGCAGAAGGTTCCGGGGAC 1 chr1:121519147-121519647 ( 55) GGCGCGCGGCGGCGAGAAGGCACTGGAGGAG 1 chrX:72276879-72277379 ( 48) GGCAGCCCCGGCCGGGGGAGGATGGAGGCGG 1 chr10:72354688-72355188 ( 23) CGCGGAACCAGGGAGGGGGAGGCCGGGCGAG 1 chr19:39435524-39436024 ( 42) GGGAGAGGTCGGTGGGCAGGAATCTAGGGGG 1 chr17:7252304-7252804 ( 19) CAGAGCAGGGACCGGACGCGAGTTGGAGATG 1 chr17:45161101-45161601 ( 62) GGCGGCGCCGGGAGACGGCGGGAAGTGGGAC 1 chr17:18780992-18781492 ( 31) CGCAGCAGCGTACGGGTCCGGGTCGGAACTG 1 chr11:119095019-11909551 ( 32) CGCGCCGGCGCCAACGCGCTCGGCGTAGTGG 1 chr1:235128496-235128996 ( 42) GACGGTGGCGGCAGGGACCGCGAAGGAGCGG 1 chr1:16644649-16645149 ( 5) GCATCCCCGGGGCAGGCGGAGGTCGGAGGTG 1 chr15:72783653-72784153 ( 66) GGGTGCAGCGCCCGGACTGGCACAACCGCCG 1 chr18:46173613-46174113 ( 70) CGCCCCGCGGTCTGCAGCGGGAGGAGCGCGG 1 chr6:89352181-89352681 ( 14) CCGGGCAGGCGGCGGTCTCGCGTAGAGCGCG 1 chr1:224113984-224114484 ( 46) CCCGGCTGCGGGTGCTGTGGCGCGGGCGGTG 1 chr19:40055813-40056313 ( 42) GCGCTCAGAGGAGGAACCCGGGGCGCAGACG 1 chr6:100880991-100881491 ( 8) CGCGGCTTGGAGGGCGGACGGGGCGCGGCGA 1 chr15:49620772-49621272 ( 65) CGAGCCACGCGCCGGGCCGTGATCGCGCACG 1 chr19:40634413-40634913 ( 59) GGGGGCGCAGCCGGCTTGGGCTGCGCCGGCG 1 chr19:34734121-34734621 ( 60) CCGGCCAGTATGAGTCCCGGGGGCGGCGGCG 1 chr1:227734916-227735416 ( 67) CCCGGCGTCGGCCAGGCTCCGGGCCGGGTAG 1 chr10:17201440-17201940 ( 39) AGCGGCGCGATGGAGGGAGGAGGAGCGACGG 1 chr19:33521479-33521979 ( 27) ACGCCAGCGGGAAAGAGCGAGGGAGGCGCAG 1 chr7:97872035-97872535 ( 43) CGGAGCAGCCCCAGGGCACGCGAGGAGGATG 1 chr19:32405176-32405676 ( 5) AGCCGCACGGCCCGGAGCAGCGGCTCCGCGG 1 chr6:16129001-16129501 ( 20) GGGACCCAGCCCCGGACTCGGAGAGGGCTGG 1 chr7:100889221-100889721 ( 12) GCGCCAGGCGGACAGGGCCGCGGCTCGGCGG 1 chr19:40190731-40191231 ( 20) GCCCCCAAACAGCGGGCTGCGGGCGTCGGCG 1 chr1:213015180-213015680 ( 18) CGCGCAGCTGGCGGGACGCTGGGCCAACGAG 1 chr1:27321870-27322370 ( 69) GACGCCATGGGGACGAGCGGCACCAGAGCCG 1 chr10:123008428-12300892 ( 19) CGGCTCGGACGGCGGCGACGCGGCAGGACAG 1 chr17:74203532-74204032 ( 58) GGTCCGCGTGGAGGGTGTCGGGGAGGAGAAG 1 chr3:183099152-183099652 ( 48) GCCGCCACCAGCAGCACCGACACCGCAGAGG 1 chr1:182391384-182391884 ( 28) CGCGCCTCGCGGGGTAGCAGGGGCGGCGCGC 1 chr19:34404377-34404877 ( 12) GAGGGAGTGGGCGAGGTCCTGGGGGGAGTCG 1 chr21:25607246-25607746 ( 49) GGGGGAGGAGGGCGGAGAAGGACTTGCGCGC 1 chr9:135967493-135967993 ( 61) GGGCGAGGTGGTGGGGGTGAGTGTGCAGGCG 1 chr12:69359627-69360127 ( 57) GCGACAGGAGCGCGGTCTCTGAGGGGAGCGG 1 chr15:68559603-68560103 ( 33) CCCGCAAACGCGCGCGCACGGAGAGCACAAG 1 chr18:46104255-46104755 ( 46) CGTGGCGCGCACAGGAGACCCGCTGTCGGCG 1 chr12:30963538-30964038 ( 55) GCAGGAGACCACCGGGTTAGAGCAGGGGGTG 1 chr1:223846059-223846559 ( 4) CGGAGCCGCCGAGGAGGTGACGGCGGCAGCC 1 chr15:69452660-69453160 ( 61) CATGGCGCGGGCGAGTGTAGGGCTGGCGCTG 1 chr4:4541871-4542371 ( 25) CGCCGCGGTAGCAGGGCGCAGGCCGGAACCT 1 chr14:104815962-10481646 ( 43) AGCGCGGCCGCGAGGACGGGCGCTGCCAGCG 1 chr10:47553219-47553719 ( 30) GGTTTGGTGCCGCGGGCTGGGGTAGGCGGCG 1 chr13:48037713-48038213 ( 1) CGCGGACGCGAGGAAACCGGGGCGTGCGCAG 1 chr17:39980671-39981171 ( 62) GGGGTCACGGCCTAGTCCGGGGACCGAGGCC 1 chr17:51153343-51153843 ( 61) GCTGCAGCCGCCAGCACCCGAAACGCGCCCG 1 chr6:11093611-11094111 ( 22) CGGAGAAGCCGCTACAGCCGCGGCCGGGCGA 1 chr19:37655893-37656393 ( 3) GGTCCAGGTACGCGGGGGCGCGGCGGCCGTC 1 chr17:40140224-40140724 ( 1) CACACAGCGGGATGGCCGAGCGCCGCACGCG 1 chr19:15418549-15419049 ( 5) GCAGCGACCCTGAGGCGACGGGCCAGCGGCG 1 chr3:185498751-185499251 ( 67) CGCAGCGGCGGGCGGACTGAGCCCGCGGAGC 1 chr6:116100831-116101331 ( 70) CGCCGCAGGCCCCGGGCAGCGTCCGCCGTTG 1 chr10:5977561-5978061 ( 26) CGACGAGCGCGGAGGACCGGGAGGCTCCCGG 1 chr19:36837972-36838472 ( 10) GATCGCGATGGGAGCAGTGGATGCGAGAGTG 1 chr1:1375002-1375502 ( 46) CGAGGACGCCAGCGGGCGCTGTGCGTAGGAA 1 chr1:24848037-24848537 ( 63) GGCGCGGAGGTGTCGGTTCGCAGCGGCGCCG 1 chr19:39390632-39391132 ( 35) CGACGAGGCGACGGCAGCCCGGACGGGGTCC 1 chr15:66497525-66498025 ( 55) CCGGGAGTCGGCGGCGATGGCGTCATCACCG 1 chr6:96521631-96522131 ( 9) GGCCTGACTCGCAGTAGACGCGGAGGAACTG 1 chr10:102399397-10239989 ( 38) CGCGCGCGCGTCCGCGGTGACGCCGTAGTCG 1 chr8:89984200-89984700 ( 19) GCGTCCCCGGGCAGGAACGGACGCGACGCAG 1 chr18:11980504-11981004 ( 26) CCCGGCACCACGTGCGCGGGGATCCGCGGAC 1 chr19:50804217-50804717 ( 60) CGAGGCTGCGACGGGAGCGGCCATGTAGTCG 1 chr19:39480715-39481215 ( 9) GGGGCCCGGCGGGGCGGCGTCGCCAACCTCG 1 chr6:30907738-30908238 ( 20) ACACGCGCCGTTAGCAGCGTGGGCGGAGTTG 1 chr10:73246873-73247373 ( 26) CCTCGCCGTCGGAGGCCTCGCGTCGCACGCC 1 chr1:232630368-232630868 ( 14) AGACGCGGCGGCCGGGCGGTCGGATCCGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 8.99421 E= 2.3e-019 -168 16 105 -1392 -130 -22 118 -1392 -24 51 1 -91 0 -51 88 -219 -1392 37 95 -200 43 109 -170 -500 17 -92 97 -241 -109 5 78 -109 -75 22 60 -119 -109 -12 111 -1392 -30 -92 103 -141 -119 60 60 -341 43 -12 -12 -19 -14 -392 143 -1392 -119 -34 111 -219 67 -151 78 -168 -141 58 58 -219 46 -5 -51 13 -68 8 93 -1392 -154 -270 143 -119 -41 32 70 -1392 25 -351 109 -100 -91 -81 101 -68 9 100 -134 -141 -130 -170 139 -183 -141 -60 116 -154 91 1 11 -1392 -24 -105 122 -1392 -75 1 70 -100 29 45 -42 -68 -183 -134 142 -241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 155 E= 2.3e-019 0.064516 0.329032 0.606452 0.000000 0.083871 0.251613 0.664516 0.000000 0.174194 0.419355 0.296774 0.109677 0.206452 0.206452 0.541935 0.045161 0.000000 0.380645 0.567742 0.051613 0.277419 0.625806 0.090323 0.006452 0.232258 0.154839 0.574194 0.038710 0.096774 0.303226 0.503226 0.096774 0.122581 0.341935 0.445161 0.090323 0.096774 0.270968 0.632258 0.000000 0.167742 0.154839 0.600000 0.077419 0.090323 0.445161 0.445161 0.019355 0.277419 0.270968 0.270968 0.180645 0.187097 0.019355 0.793548 0.000000 0.090323 0.232258 0.632258 0.045161 0.329032 0.103226 0.503226 0.064516 0.077419 0.438710 0.438710 0.045161 0.283871 0.283871 0.206452 0.225806 0.129032 0.309677 0.561290 0.000000 0.070968 0.045161 0.793548 0.090323 0.154839 0.367742 0.477419 0.000000 0.245161 0.025806 0.625806 0.103226 0.109677 0.167742 0.593548 0.129032 0.219355 0.587097 0.116129 0.077419 0.083871 0.090323 0.767742 0.058065 0.077419 0.193548 0.658065 0.070968 0.387097 0.296774 0.316129 0.000000 0.174194 0.141935 0.683871 0.000000 0.122581 0.296774 0.477419 0.103226 0.251613 0.400000 0.219355 0.129032 0.058065 0.116129 0.787097 0.038710 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGSGSCGSSGGSNGGRSNSGSGGCGGVGSVG MEME-6 regular expression -------------------------------------------------------------------------------- [GC][GC][CG][GAC][GC][CA][GA][GC][GC][GC]G[CG][ACG]G[GC][GA][CG][ACTG][GC]G[GC][GA]G[CA]GG[AGC]G[GC][CAG]G -------------------------------------------------------------------------------- Time 4343.04 secs. ******************************************************************************** ******************************************************************************** MOTIF GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 width = 43 sites = 14 llr = 313 E-value = 1.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 Description -------------------------------------------------------------------------------- Simplified A 125347424593242481:7114a:433448456126143422 pos.-specific C ::134:11:1113:121:1:3:4:1:1:::1113:1:::621: probability G 67442344321:3352:181612:556146141137:9:1:54 matrix T 21:1::1432:624111811:9::41:61::12:6:4:6:424 bits 2.3 * 2.1 * 1.8 * 1.6 * * Relative 1.4 * * ** * * * * Entropy 1.1 * ** ** * * * * *** (32.3 bits) 0.9 * * ** **** * * * ** * *** 0.7 *** * * ** **** * * * **** ****** * 0.5 *** ** **** * ************************* * 0.2 ************ ****************************** 0.0 ------------------------------------------- Multilevel GGAGCAGGAAATCAGAATGAGTCAGGGTAGAAAATGAGTCTGT consensus TAGAAGATGG AGTAC C A TAAAGA GTCGAT AAAAG sequence CG ATT AG G G CTA T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr13:110965217-11096571 - 55 9.23e-20 GGT GGAGCAGGTAATCGGAATGAGTCAGGGTGGAAAATGAGTCAGG GTGGAGTAAG chr13:62642919-62643419 - 3 1.45e-18 GAGTCAGGGT GGAGCAGGTAATAACAATGAGTCAGAGTGGAGAATGAGTCAGG GT chr5:43336176-43336676 + 58 5.51e-18 tgagacagga tggagaatgaatcagaatgagtcagggtggagaatgagtcagg chr8:6648816-6649316 + 49 3.01e-12 agtaaggaca gaacaggtgactaaggatgactaaggatagaacaggtgactaa gggtgacta chr3:182212283-182212783 - 2 1.10e-11 CAGTAGTTCC AGCCAACTTAATTTGACTGTATAATAGTTAAAAATATGTGTGT G chr6:150418256-150418756 - 39 2.77e-11 CTGTAGTCAC TGAACAATTGATTTAGATGACTAAGTCTAACACATCTGTATTT ACACGATCTG chr2:165953811-165954311 + 31 9.26e-11 TGGGTGGGCG GGCCGAGGAAATGGAATTCAGGAATAAAGGAAACGGAGTATGA AGAAGGGGAA chr9:34328661-34329161 + 49 2.60e-10 GCTGAAGAAA AGGCAGAGATATGGGGATGAAAGATAGGAAAGTAGGTGAACTT TAGGAAGAG chr1:183471821-183472321 + 30 8.96e-10 GTGCAAAAAG GAAGAGGGAAATCGGCAGGAGTGATAAGAAGGGGGAAGACTTT GAGTGTAACT chr17:7484261-7484761 - 3 1.10e-09 AAGGTTTTTG GGGGAGGAAGAAGAAAAAGGGTAACGAATAAATAAGTAACCGG GT chr19:40920944-40921444 + 19 1.26e-09 TTATCCTCCT GGGTCAAAGTAACTTCTGGGCTCAGGGTAAACACTGAGTCACT GTGTGTAAAG chr19:40090473-40090973 - 9 1.44e-09 TATCAGAGGA GGGGGATTGTGAGATCATGAGTGACGGAGGGGACTGTGAGTGT GTGCGTGA chr6:73803389-73803889 - 36 1.54e-09 ATTGACCGCA GTAACACAACACTTGTATTAGTCATGGAAGATTAAGAAAAAAG CTGTGTCACA chr12:51406789-51407289 + 26 3.30e-09 ggataattga taaacaacagaaatctatttctcagtctggaggctaagtccaa gatgagggtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:110965217-11096571 9.2e-20 54_[-7]_3 chr13:62642919-62643419 1.4e-18 2_[-7]_55 chr5:43336176-43336676 5.5e-18 57_[+7] chr8:6648816-6649316 3e-12 48_[+7]_9 chr3:182212283-182212783 1.1e-11 1_[-7]_56 chr6:150418256-150418756 2.8e-11 38_[-7]_19 chr2:165953811-165954311 9.3e-11 30_[+7]_27 chr9:34328661-34329161 2.6e-10 48_[+7]_9 chr1:183471821-183472321 9e-10 29_[+7]_28 chr17:7484261-7484761 1.1e-09 2_[-7]_55 chr19:40920944-40921444 1.3e-09 18_[+7]_39 chr19:40090473-40090973 1.4e-09 8_[-7]_49 chr6:73803389-73803889 1.5e-09 35_[-7]_22 chr12:51406789-51407289 3.3e-09 25_[+7]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD width=43 seqs=14 chr13:110965217-11096571 ( 55) GGAGCAGGTAATCGGAATGAGTCAGGGTGGAAAATGAGTCAGG 1 chr13:62642919-62643419 ( 3) GGAGCAGGTAATAACAATGAGTCAGAGTGGAGAATGAGTCAGG 1 chr5:43336176-43336676 ( 58) TGGAGAATGAATCAGAATGAGTCAGGGTGGAGAATGAGTCAGG 1 chr8:6648816-6649316 ( 49) GAACAGGTGACTAAGGATGACTAAGGATAGAACAGGTGACTAA 1 chr3:182212283-182212783 ( 2) AGCCAACTTAATTTGACTGTATAATAGTTAAAAATATGTGTGT 1 chr6:150418256-150418756 ( 39) TGAACAATTGATTTAGATGACTAAGTCTAACACATCTGTATTT 1 chr2:165953811-165954311 ( 31) GGCCGAGGAAATGGAATTCAGGAATAAAGGAAACGGAGTATGA 1 chr9:34328661-34329161 ( 49) AGGCAGAGATATGGGGATGAAAGATAGGAAAGTAGGTGAACTT 1 chr1:183471821-183472321 ( 30) GAAGAGGGAAATCGGCAGGAGTGATAAGAAGGGGGAAGACTTT 1 chr17:7484261-7484761 ( 3) GGGGAGGAAGAAGAAAAAGGGTAACGAATAAATAAGTAACCGG 1 chr19:40920944-40921444 ( 19) GGGTCAAAGTAACTTCTGGGCTCAGGGTAAACACTGAGTCACT 1 chr19:40090473-40090973 ( 9) GGGGGATTGTGAGATCATGAGTGACGGAGGGGACTGTGAGTGT 1 chr6:73803389-73803889 ( 36) GTAACACAACACTTGTATTAGTCATGGAAGATTAAGAAAAAAG 1 chr12:51406789-51407289 ( 26) TAAACAACAGAAATCTATTTCTCAGTCTGGAGGCTAAGTCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 11.8848 E= 1.2e-006 -53 -1045 113 6 6 -1045 128 -153 128 -104 28 -1045 47 -4 28 -153 79 54 -45 -1045 179 -1045 -4 -1045 79 -104 54 -153 6 -204 28 79 105 -1045 -4 47 128 -204 -45 6 205 -204 -204 -1045 47 -204 -1045 164 6 -4 -4 6 79 -1045 -4 79 6 -104 77 -53 105 -45 -45 -53 193 -204 -1045 -53 -153 -1045 -104 193 -1045 -204 142 -53 179 -1045 -104 -53 -53 -4 96 -1045 -153 -1045 -204 205 79 54 -45 -1045 228 -1045 -1045 -1045 -1045 -104 77 79 79 -1045 77 -53 47 -104 96 -1045 47 -1045 -104 147 105 -1045 54 -53 105 -1045 96 -1045 193 -204 -104 -1045 105 -204 54 -153 128 -104 -104 6 164 -4 -204 -1045 -53 -1045 -4 147 6 -204 128 -1045 147 -1045 -1045 105 -53 -1045 154 -1045 105 -1045 -1045 147 47 96 -104 -1045 79 -45 -1045 105 6 -204 77 6 6 -1045 28 105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 14 E= 1.2e-006 0.142857 0.000000 0.642857 0.214286 0.214286 0.000000 0.714286 0.071429 0.500000 0.142857 0.357143 0.000000 0.285714 0.285714 0.357143 0.071429 0.357143 0.428571 0.214286 0.000000 0.714286 0.000000 0.285714 0.000000 0.357143 0.142857 0.428571 0.071429 0.214286 0.071429 0.357143 0.357143 0.428571 0.000000 0.285714 0.285714 0.500000 0.071429 0.214286 0.214286 0.857143 0.071429 0.071429 0.000000 0.285714 0.071429 0.000000 0.642857 0.214286 0.285714 0.285714 0.214286 0.357143 0.000000 0.285714 0.357143 0.214286 0.142857 0.500000 0.142857 0.428571 0.214286 0.214286 0.142857 0.785714 0.071429 0.000000 0.142857 0.071429 0.000000 0.142857 0.785714 0.000000 0.071429 0.785714 0.142857 0.714286 0.000000 0.142857 0.142857 0.142857 0.285714 0.571429 0.000000 0.071429 0.000000 0.071429 0.857143 0.357143 0.428571 0.214286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.500000 0.357143 0.357143 0.000000 0.500000 0.142857 0.285714 0.142857 0.571429 0.000000 0.285714 0.000000 0.142857 0.571429 0.428571 0.000000 0.428571 0.142857 0.428571 0.000000 0.571429 0.000000 0.785714 0.071429 0.142857 0.000000 0.428571 0.071429 0.428571 0.071429 0.500000 0.142857 0.142857 0.214286 0.642857 0.285714 0.071429 0.000000 0.142857 0.000000 0.285714 0.571429 0.214286 0.071429 0.714286 0.000000 0.571429 0.000000 0.000000 0.428571 0.142857 0.000000 0.857143 0.000000 0.428571 0.000000 0.000000 0.571429 0.285714 0.571429 0.142857 0.000000 0.357143 0.214286 0.000000 0.428571 0.214286 0.071429 0.500000 0.214286 0.214286 0.000000 0.357143 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRVVARDDAATNDGVATGASTVAKRRWRRARAAKGWGWMHGD MEME-7 regular expression -------------------------------------------------------------------------------- [GT][GA][AG][GAC][CAG][AG][GA][GTA][AGT][AGT]A[TA][CGAT][ATG][GA][ACG]ATGA[GC]T[CAG]A[GT][GA][GA][TA][AG][GA]A[AG][AT][AC][TG][GA][AT]G[TA][CA][TAC][GAT][TGA] -------------------------------------------------------------------------------- Time 4977.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 width = 42 sites = 6 llr = 205 E-value = 7.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 Description -------------------------------------------------------------------------------- Simplified A :::23:::3::::::3:::::3:::3:::223::7:3:7:2: pos.-specific C 8a::2a:72::525a:58a:237:73::a55:33:33223:a probability G 2:782::::2:::::252::52::3::2::3:2337:5:7:: matrix T ::3:3:a358a585:5:::a323a:3a8:3:753::332:8: bits 2.3 * * * * * 2.1 * * * * * 1.8 * ** * * ** * * * * 1.6 * ** ** * * ** * *** ** Relative 1.4 * ** ** * * ** * *** * ** Entropy 1.1 ** * ** ** * * *** * *** * * ** (49.2 bits) 0.9 **** *** ****** *** *** *** * ** **** 0.7 **** *************** *** *** * ** **** 0.5 **** **************** ******************** 0.2 ********************* ******************** 0.0 ------------------------------------------ Multilevel CCGGACTCTTTCTCCTCCCTGACTCATTCCCTTCAGAGAGTC consensus T T TA T T AG TCT GC TGACGGCCT C sequence T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------ chr10:42782508-42783008 + 14 7.99e-19 CGTCCCCATG CCGGTCTCTTTTTTCTGCCTTCTTGTTTCCCTCCGGCGAGTC AGCGCGACTG chr10:73730317-73730817 - 9 9.59e-19 CGTCCAGGCG CCGGTCTCTTTTTTCTGCCTTTTTGTTTCCCTCCGGAGAGTC GGCGCGAC chr13:110965217-11096571 + 10 2.33e-18 ctactccat cctgactcattctccaccctgactcattctgattacttactc caccctgact chr13:62642919-62643419 + 48 4.07e-18 cctgctccac cctgactcattcttcaccctgactcattccaattacctactc aaccctgact chr18:46173613-46174113 - 12 1.78e-14 CGCCGGCTCC CCGGGCTTCTTTCCCGCGCTCCCTCCTTCTGTTGAGACCGTC ACCTTCCCGA chr1:21345623-21346123 + 1 6.24e-14 . GCGACCTTTGTCTCCTGCCTGGCTCCTGCACTGGAGTGTGAC CCGGGGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:42782508-42783008 8e-19 13_[+8]_45 chr10:73730317-73730817 9.6e-19 8_[-8]_50 chr13:110965217-11096571 2.3e-18 9_[+8]_49 chr13:62642919-62643419 4.1e-18 47_[+8]_11 chr18:46173613-46174113 1.8e-14 11_[-8]_47 chr1:21345623-21346123 6.2e-14 [+8]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC width=42 seqs=6 chr10:42782508-42783008 ( 14) CCGGTCTCTTTTTTCTGCCTTCTTGTTTCCCTCCGGCGAGTC 1 chr10:73730317-73730817 ( 9) CCGGTCTCTTTTTTCTGCCTTTTTGTTTCCCTCCGGAGAGTC 1 chr13:110965217-11096571 ( 10) CCTGACTCATTCTCCACCCTGACTCATTCTGATTACTTACTC 1 chr13:62642919-62643419 ( 48) CCTGACTCATTCTTCACCCTGACTCATTCCAATTACCTACTC 1 chr18:46173613-46174113 ( 12) CCGGGCTTCTTTCCCGCGCTCCCTCCTTCTGTTGAGACCGTC 1 chr1:21345623-21346123 ( 1) GCGACCTTTGTCTCCTGCCTGGCTCCTGCACTGGAGTGTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 42 n= 35400 bayes= 11.3035 E= 7.1e-003 -923 150 -82 -923 -923 177 -923 -923 -923 -923 118 69 -31 -923 150 -923 69 -82 -82 69 -923 177 -923 -923 -923 -923 -923 228 -923 118 -923 69 69 -82 -923 128 -923 -923 -82 201 -923 -923 -923 228 -923 77 -923 128 -923 -82 -923 201 -923 77 -923 128 -923 177 -923 -923 69 -923 -82 128 -923 77 77 -923 -923 150 -82 -923 -923 177 -923 -923 -923 -923 -923 228 -923 -82 77 69 69 18 -82 -31 -923 118 -923 69 -923 -923 -923 228 -923 118 18 -923 69 18 -923 69 -923 -923 -923 228 -923 -923 -82 201 -923 177 -923 -923 -31 77 -923 69 -31 77 18 -923 69 -923 -923 169 -923 18 -82 128 -923 18 18 69 169 -923 18 -923 -923 18 118 -923 69 18 -923 69 -923 -82 77 69 169 -82 -923 -31 -923 18 118 -923 -31 -923 -923 201 -923 177 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 42 nsites= 6 E= 7.1e-003 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.166667 0.000000 0.833333 0.000000 0.333333 0.166667 0.166667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.333333 0.166667 0.000000 0.500000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.166667 0.000000 0.833333 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.166667 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.500000 0.333333 0.333333 0.333333 0.166667 0.166667 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.333333 0.333333 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 0.166667 0.500000 0.000000 0.333333 0.166667 0.500000 0.333333 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.333333 0.166667 0.500000 0.000000 0.333333 0.333333 0.333333 0.666667 0.000000 0.333333 0.000000 0.000000 0.333333 0.666667 0.000000 0.333333 0.333333 0.000000 0.333333 0.000000 0.166667 0.500000 0.333333 0.666667 0.166667 0.000000 0.166667 0.000000 0.333333 0.666667 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKGNCTYWTTYTYCWSCCTKNYTSHTTCYSWYBRSHKASTC MEME-8 regular expression -------------------------------------------------------------------------------- CC[GT]G[AT]CT[CT][TA]TT[CT]T[CT]C[TA][CG]CCT[GT][AC][CT]T[CG][ACT]TTC[CT][CG][TA][TC][CGT][AG][GC][ACT][GT]A[GC]TC -------------------------------------------------------------------------------- Time 5604.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TASTTTKATATTTTAT MEME-9 width = 16 sites = 7 llr = 128 E-value = 6.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TASTTTKATATTTTAT MEME-9 Description -------------------------------------------------------------------------------- Simplified A 19::3::a:93:::a: pos.-specific C ::6:::1:1::::::: probability G :13:::6:1::3:::1 matrix T 9:1a7a3:7177aa:9 bits 2.3 * * * *** 2.1 * * * *** 1.8 * * * *** 1.6 ** * * * * **** Relative 1.4 ** *** * ******* Entropy 1.1 ** *** * ******* (26.3 bits) 0.9 ** *** ********* 0.7 ** *** ********* 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel TACTTTGATATTTTAT consensus G A T AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTTTKATATTTTAT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chrUn_KI270467v1:3090-35 + 55 2.14e-11 atattttggc tactttgatattttat gtacagttta chrUn_KI270466v1:230-730 + 12 2.14e-11 atattttgtg tactttgatattttat gtacagcata chrUn_KI270467v1:1949-24 + 70 4.73e-10 atatttggtg tactttgagattttat gtacagaata chr6:73461333-73461833 - 66 5.22e-09 CTTTTTTTAT TATTATTATTTTTTAT TTTTATTTAT chr15:67792365-67792865 - 44 1.08e-08 ACTCAGTGGG AAGTTTTATATTTTAG GGTCTGGAGC chr12:120291424-12029192 - 55 1.14e-08 GTCTTATGTT TGGTTTGATAAGTTAT GAGCTGTTCC chr1:144412467-144412967 - 32 2.85e-08 CGCAGTCCCC TACTATCACAAGTTAT GCAGTCGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTTTKATATTTTAT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:3090-35 2.1e-11 54_[+9]_30 chrUn_KI270466v1:230-730 2.1e-11 11_[+9]_73 chrUn_KI270467v1:1949-24 4.7e-10 69_[+9]_15 chr6:73461333-73461833 5.2e-09 65_[-9]_19 chr15:67792365-67792865 1.1e-08 43_[-9]_41 chr12:120291424-12029192 1.1e-08 54_[-9]_30 chr1:144412467-144412967 2.9e-08 31_[-9]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTTTKATATTTTAT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TASTTTKATATTTTAT width=16 seqs=7 chrUn_KI270467v1:3090-35 ( 55) TACTTTGATATTTTAT 1 chrUn_KI270466v1:230-730 ( 12) TACTTTGATATTTTAT 1 chrUn_KI270467v1:1949-24 ( 70) TACTTTGAGATTTTAT 1 chr6:73461333-73461833 ( 66) TATTATTATTTTTTAT 1 chr15:67792365-67792865 ( 44) AAGTTTTATATTTTAG 1 chr12:120291424-12029192 ( 55) TGGTTTGATAAGTTAT 1 chr1:144412467-144412967 ( 32) TACTATCACAAGTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTTTKATATTTTAT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 14.0532 E= 6.8e+000 -53 -945 -945 205 205 -945 -104 -945 -945 96 -4 -53 -945 -945 -945 228 47 -945 -945 179 -945 -945 -945 228 -945 -104 96 47 228 -945 -945 -945 -945 -104 -104 179 205 -945 -945 -53 47 -945 -945 179 -945 -945 -4 179 -945 -945 -945 228 -945 -945 -945 228 228 -945 -945 -945 -945 -945 -104 205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTTTKATATTTTAT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 7 E= 6.8e+000 0.142857 0.000000 0.000000 0.857143 0.857143 0.000000 0.142857 0.000000 0.000000 0.571429 0.285714 0.142857 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.571429 0.285714 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.142857 0.714286 0.857143 0.000000 0.000000 0.142857 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTTTKATATTTTAT MEME-9 regular expression -------------------------------------------------------------------------------- TA[CG]T[TA]T[GT]ATA[TA][TG]TTAT -------------------------------------------------------------------------------- Time 6203.65 secs. ******************************************************************************** ******************************************************************************** MOTIF AWAATCYGAAATCHGAAACACT MEME-10 width = 22 sites = 5 llr = 121 E-value = 1.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWAATCYGAAATCHGAAACACT MEME-10 Description -------------------------------------------------------------------------------- Simplified A a6a822:2a68::22aa8:a:: pos.-specific C :::::84::2::84::::a:6: probability G :::::::8::::::8::2::2: matrix T :4:28:6::22a24::::::2a bits 2.3 * * * * ** * * 2.1 * * * * ** * * 1.8 * * * * ** ** * 1.6 * *** * ** ** ** * Relative 1.4 ***** * ** ***** * Entropy 1.1 ********* *** ****** * (35.0 bits) 0.9 ************* ****** * 0.7 ************* ****** * 0.5 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel AAAATCTGAAATCCGAAACACT consensus T TAACA CT TTA G G sequence T A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWAATCYGAAATCHGAAACACT MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr17:49628460-49628960 + 35 2.29e-13 aaaatctgga aaaatctgaaatccaaaacact ctggtcccaa chr6:149357888-149358388 - 79 2.68e-12 . AAAATCCAAAATCCGAAACATT TTTGGTCCCA chr17:27288121-27288621 - 70 2.68e-12 TGTATGCAA ATATTCTGATATCTGAAACACT TCTGGTCCCA chrX:96834090-96834590 + 7 1.07e-11 tccaaa aaaatctgacatctgaagcagt tctggtccca chr5:136146148-136146648 - 77 6.93e-11 AA ATAAAACGAATTTAGAAACACT GAGAACACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWAATCYGAAATCHGAAACACT MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:49628460-49628960 2.3e-13 34_[+10]_44 chr6:149357888-149358388 2.7e-12 78_[-10] chr17:27288121-27288621 2.7e-12 69_[-10]_9 chrX:96834090-96834590 1.1e-11 6_[+10]_72 chr5:136146148-136146648 6.9e-11 76_[-10]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWAATCYGAAATCHGAAACACT MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWAATCYGAAATCHGAAACACT width=22 seqs=5 chr17:49628460-49628960 ( 35) AAAATCTGAAATCCAAAACACT 1 chr6:149357888-149358388 ( 79) AAAATCCAAAATCCGAAACATT 1 chr17:27288121-27288621 ( 70) ATATTCTGATATCTGAAACACT 1 chrX:96834090-96834590 ( 7) AAAATCTGACATCTGAAGCAGT 1 chr5:136146148-136146648 ( 77) ATAAAACGAATTTAGAAACACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWAATCYGAAATCHGAAACACT MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.4621 E= 1.8e+001 228 -897 -897 -897 154 -897 -897 95 228 -897 -897 -897 195 -897 -897 -4 -4 -897 -897 195 -4 144 -897 -897 -897 44 -897 154 -4 -897 144 -897 228 -897 -897 -897 154 -55 -897 -4 195 -897 -897 -4 -897 -897 -897 228 -897 144 -897 -4 -4 44 -897 95 -4 -897 144 -897 228 -897 -897 -897 228 -897 -897 -897 195 -897 -55 -897 -897 177 -897 -897 228 -897 -897 -897 -897 103 -55 -4 -897 -897 -897 228 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWAATCYGAAATCHGAAACACT MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 5 E= 1.8e+001 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.200000 0.000000 0.000000 0.800000 0.200000 0.800000 0.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.200000 0.000000 0.200000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.200000 0.400000 0.000000 0.400000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.200000 0.200000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWAATCYGAAATCHGAAACACT MEME-10 regular expression -------------------------------------------------------------------------------- A[AT]A[AT][TA][CA][TC][GA]A[ACT][AT]T[CT][CTA][GA]AA[AG]CA[CGT]T -------------------------------------------------------------------------------- Time 6784.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:105244097-105244597 1.03e-01 49_[-8(7.04e-05)]_9 chr7:92590089-92590589 9.96e-01 100 chr19:39480715-39481215 9.88e-01 100 chr6:28399608-28400108 6.36e-01 100 chr7:149753545-149754045 6.99e-01 100 chr11:119095019-11909551 8.59e-01 31_[+6(3.17e-05)]_38 chr8:89984200-89984700 7.01e-01 100 chr6:150418256-150418756 2.77e-09 8_[-3(5.64e-07)]_14_[-7(2.77e-11)]_\ 19 chr1:44213144-44213644 1.00e+00 100 chr15:49620772-49621272 4.02e-01 64_[-6(4.78e-05)]_5 chr7:103344498-103344998 3.10e-01 100 chr5:112707694-112708194 5.40e-01 100 chr6:10403543-10404043 2.01e-01 100 chr22:20981905-20982405 5.92e-01 100 chr14:52296327-52296827 7.03e-04 39_[-2(3.56e-08)]_39 chr22:19432263-19432763 6.37e-01 36_[+6(1.85e-05)]_33 chr18:50878493-50878993 3.02e-01 100 chr1:23691667-23692167 9.68e-01 100 chr8:21491732-21492232 1.86e-06 1_[-1(3.38e-09)]_31_[-3(5.16e-06)]_\ 10 chr1:121519147-121519647 5.12e-01 54_[-6(2.85e-05)]_15 chr1:236064843-236065343 1.96e-01 63_[+6(2.42e-06)]_6 chr12:53501157-53501657 3.88e-04 23_[+6(3.13e-06)]_46 chr18:3297288-3297788 8.10e-01 100 chr2:128227805-128228305 2.16e-34 4_[-4(1.07e-07)]_1_[+1(5.67e-27)]_2_\ [+3(3.24e-10)]_19 chr8:6648816-6649316 1.37e-05 [+7(1.24e-08)]_5_[+7(3.01e-12)]_9 chr6:100880991-100881491 4.51e-01 7_[-6(4.78e-05)]_62 chr1:150487000-150487500 6.65e-02 100 chr19:42302215-42302715 3.48e-01 100 chr3:182212283-182212783 3.85e-10 1_[-7(1.10e-11)]_56 chr1:109484050-109484550 1.97e-01 14_[-6(1.85e-05)]_55 chr17:40123453-40123953 1.19e-01 100 chr9:135967493-135967993 6.71e-01 60_[+6(8.60e-05)]_9 chr7:106009421-106009921 1.54e-01 8_[+6(2.42e-06)]_61 chr12:56158249-56158749 6.87e-03 16_[+6(1.85e-07)]_53 chr20:36236198-36236698 1.50e-01 6_[+8(5.36e-05)]_52 chr1:227563430-227563930 8.70e-02 100 chr22:30362544-30363044 4.83e-02 63_[-2(4.32e-05)]_15 chr15:64387563-64388063 7.76e-01 100 chr10:7788129-7788629 5.52e-01 10_[+6(3.13e-06)]_59 chr13:48037713-48038213 4.19e-01 100 chr15:67792365-67792865 4.23e-09 23_[-2(2.69e-05)]_1_[+3(3.41e-05)]_\ 38 chr3:158644330-158644830 9.32e-01 100 chr1:53220314-53220814 1.71e-01 13_[-6(2.75e-06)]_56 chr11:67122383-67122883 4.08e-26 56_[-1(3.75e-24)]_2 chr7:99465825-99466325 5.01e-01 100 chr1:151070421-151070921 6.08e-03 34_[-3(5.13e-05)]_50 chr17:74203532-74204032 1.51e-01 57_[+6(7.10e-05)]_12 chr7:133492158-133492658 1.29e-09 [+3(2.88e-06)]_35_[-1(1.29e-09)]_7 chr1:179293658-179294158 4.32e-01 100 chr1:223707175-223707675 5.85e-02 45_[-3(6.40e-05)]_39 chr6:73461333-73461833 2.12e-36 2_[+1(1.52e-29)]_2_[+1(1.06e-11)]_\ 12 chr7:139359199-139359699 9.00e-01 100 chr18:46939296-46939796 7.18e-05 9_[+2(9.16e-08)]_69 chr15:72155929-72156429 5.50e-02 25_[-7(5.98e-05)]_32 chr1:28884716-28885216 1.57e-06 4_[+1(5.84e-10)]_54 chr10:84139432-84139932 9.21e-02 33_[+6(2.75e-06)]_36 chr20:63628219-63628719 2.26e-01 100 chr5:36690297-36690797 9.17e-01 100 chr20:63657983-63658483 1.26e-01 100 chr1:229626159-229626659 8.75e-01 100 chr5:134371035-134371535 3.72e-01 100 chr3:33798546-33799046 9.10e-01 100 chr12:103965720-10396622 9.42e-01 100 chr17:18780992-18781492 6.39e-01 30_[-6(3.17e-05)]_39 chr5:134411686-134412186 9.87e-01 100 chr1:231420966-231421466 9.97e-01 100 chr14:99821635-99822135 6.55e-04 8_[-3(2.91e-07)]_76 chr19:10416378-10416878 1.93e-01 29_[+6(4.59e-07)]_40 chr9:128322352-128322852 9.46e-01 100 chr21:43728535-43729035 9.95e-02 41_[+6(1.48e-05)]_28 chr5:139293711-139294211 3.38e-01 5_[-6(6.58e-06)]_64 chr10:86796260-86796760 2.89e-28 5_[+3(2.63e-06)]_10_[-1(1.28e-25)]_\ 10_[-3(7.50e-05)]_1 chr3:160565737-160566237 1.15e-01 100 chr8:25458982-25459482 5.57e-01 61_[+6(6.44e-05)]_8 chr19:40055813-40056313 1.25e-01 41_[-6(4.78e-05)]_28 chr17:7484261-7484761 1.14e-09 2_[-7(1.10e-09)]_21_[-3(2.64e-07)]_\ 18 chr1:26169662-26170162 1.56e-01 65_[-6(1.24e-06)]_4 chr21:39182986-39183486 9.54e-01 100 chr6:5306315-5306815 1.04e-08 3_[-3(7.05e-06)]_34_[-2(5.78e-08)]_\ 25 chr19:39397532-39398032 8.88e-01 100 chr6:134052047-134052547 1.11e-06 [+1(9.22e-16)]_58 chr17:44014722-44015222 7.15e-02 54_[-8(8.47e-06)]_4 chr15:65792269-65792769 4.39e-01 100 chr3:179323446-179323946 3.29e-01 53_[-6(3.13e-06)]_16 chr10:14878176-14878676 1.61e-01 58_[+6(1.86e-06)]_11 chr5:10353237-10353737 7.95e-01 100 chr12:82358411-82358911 4.36e-01 100 chr17:80544780-80545280 8.45e-01 100 chr10:102399397-10239989 9.88e-01 100 chr12:76764103-76764603 4.13e-01 100 chr19:47112561-47113061 7.97e-01 100 chr19:43709349-43709849 2.23e-30 31_[-1(1.52e-29)]_1_[-3(7.62e-06)]_\ 10 chr12:12611636-12612136 5.97e-02 21_[-6(9.38e-06)]_48 chr9:18976692-18977192 7.94e-05 6_[+1(2.13e-05)]_52 chr17:45161101-45161601 5.99e-01 61_[-6(3.17e-05)]_8 chr19:40920944-40921444 1.71e-03 18_[+7(1.26e-09)]_39 chr1:160261814-160262314 8.45e-01 100 chr13:41960963-41961463 7.41e-01 100 chr14:28768005-28768505 7.54e-01 100 chr17:3889983-3890483 9.64e-01 100 chr14:104815962-10481646 3.34e-01 100 chr5:59127576-59128076 1.60e-01 52_[+10(4.01e-05)]_26 chr12:69359627-69360127 5.83e-01 56_[+6(9.46e-05)]_13 chr5:36877238-36877738 9.72e-01 100 chr1:211258602-211259102 8.13e-01 100 chr2:27719960-27720460 4.21e-11 18_[-1(3.33e-16)]_40 chr5:138866043-138866543 6.44e-29 31_[-1(1.52e-29)]_[+9(9.98e-05)]_11 chr1:144412467-144412967 8.24e-27 31_[-9(2.85e-08)]_[+5(2.13e-30)]_3 chr1:23959791-23960291 6.98e-01 100 chr1:228486611-228487111 4.70e-02 51_[-6(3.13e-06)]_18 chr4:19786565-19787065 1.27e-06 37_[+2(2.91e-08)]_41 chr8:124200495-124200995 4.05e-06 9_[-3(8.69e-08)]_75 chr15:99568500-99569000 6.30e-05 69_[+2(1.36e-06)]_9 chr14:55051609-55052109 3.51e-01 58_[+6(2.30e-05)]_11 chr19:37506758-37507258 1.93e-01 100 chr6:11093611-11094111 4.89e-01 100 chr6:28542567-28543067 4.38e-01 100 chr5:138032732-138033232 4.47e-02 67_[+6(6.15e-07)]_2 chr6:125956702-125957202 1.76e-02 59_[+6(3.13e-06)]_10 chr21:39313480-39313980 9.97e-01 100 chr5:149345461-149345961 7.48e-01 100 chr19:37317773-37318273 9.26e-01 100 chr18:62522499-62522999 8.75e-01 100 chr5:181223134-181223634 9.02e-01 100 chr1:156740648-156741148 8.11e-01 100 chr10:35197187-35197687 5.29e-37 5_[-3(3.28e-07)]_8_[-1(1.52e-29)]_\ 11_[+4(8.08e-10)]_2 chr1_KI270713v1_random:2 3.92e-01 100 chr15:72473753-72474253 8.42e-01 100 chr8:55773045-55773545 9.63e-01 100 chr1:9943111-9943611 8.31e-01 100 chr12:31749121-31749621 6.12e-02 100 chr19:36849658-36850158 5.79e-01 100 chr19:40103557-40104057 1.29e-36 4_[-4(7.19e-08)]_1_[+1(1.52e-29)]_3_\ [+3(3.28e-07)]_18 chr3:194685828-194686328 8.16e-01 100 chr1:233112892-233113392 3.01e-01 100 chr19:10252045-10252545 2.48e-01 56_[+6(2.12e-06)]_13 chr6:27133027-27133527 3.83e-01 100 chr6:139374281-139374781 1.46e-01 64_[+6(4.59e-07)]_5 chr5:140718595-140719095 8.87e-02 100 chr19:34677035-34677535 8.87e-01 100 chr4:77075907-77076407 1.08e-01 100 chr9:128771792-128772292 8.74e-01 6_[+6(2.85e-05)]_63 chr19:40219625-40220125 2.01e-01 100 chr19:33080927-33081427 5.53e-02 29_[+6(1.85e-05)]_40 chr1:235128496-235128996 3.32e-01 41_[+6(3.52e-05)]_28 chr7:141072474-141072974 5.83e-01 100 chr19:50804217-50804717 6.74e-01 100 chr5:181218174-181218674 7.99e-01 100 chr2:241102188-241102688 9.95e-01 100 chr10:25016579-25017079 7.84e-03 100 chr6:169396012-169396512 4.52e-03 17_[-5(5.57e-05)]_33 chr16:4271360-4271860 7.21e-01 100 chr21:32771748-32772248 3.75e-01 100 chr10:122980293-12298079 9.63e-02 37_[-6(9.38e-06)]_32 chr8:629164-629664 8.41e-01 100 chr12:106357530-10635803 8.38e-01 100 chr19:33521479-33521979 5.40e-02 23_[-8(1.18e-05)]_35 chr2:159712442-159712942 7.58e-02 69_[+6(2.75e-06)] chr15:75903742-75904242 9.88e-01 100 chr12:30963538-30964038 5.55e-01 100 chr12:93677295-93677795 2.62e-02 22_[-6(7.41e-06)]_10_[+2(9.80e-05)]_\ 15 chr19:35717080-35717580 7.39e-01 100 chr10:123008428-12300892 2.96e-01 18_[-6(7.10e-05)]_51 chr1:226122457-226122957 1.72e-02 44_[-4(6.83e-07)]_40 chrX:53422129-53422629 5.16e-01 100 chr5:43514625-43515125 3.72e-01 100 chr18:46104255-46104755 5.62e-01 100 chr19:35213993-35214493 8.68e-01 100 chr6:109094435-109094935 9.83e-01 100 chr5:136146148-136146648 1.52e-08 24_[+9(3.12e-05)]_36_\ [-10(6.93e-11)]_2 chr19:40090473-40090973 4.09e-04 8_[-7(1.44e-09)]_49 chr3:185586233-185586733 2.59e-01 100 chr6:85678987-85679487 7.19e-02 3_[+6(1.32e-05)]_66 chr19:35385893-35386393 3.07e-36 32_[-1(1.52e-29)]_7_[+4(2.44e-09)]_\ 3 chr19:37469105-37469605 9.22e-01 100 chr1:116909732-116910232 2.07e-02 53_[+6(2.93e-07)]_16 chr5:32174221-32174721 2.09e-04 1_[+8(4.79e-06)]_57 chr5:57173996-57174496 8.14e-02 31_[+6(7.41e-06)]_38 chr19:35947287-35947787 4.67e-02 18_[+7(9.64e-05)]_39 chr19:34404377-34404877 7.41e-03 41_[-7(5.98e-05)]_16 chr7:92134513-92135013 9.50e-01 100 chr1:91885916-91886416 9.89e-01 100 chr8:6972157-6972657 5.66e-03 6_[+10(3.44e-05)]_72 chr10:114649185-11464968 4.00e-31 16_[+1(1.52e-29)]_5_[+3(1.47e-05)]_\ 21 chr7:118184048-118184548 4.31e-02 26_[+6(1.24e-06)]_43 chr2:84888368-84888868 1.59e-01 100 chr5:159331464-159331964 7.42e-01 100 chr17:42998356-42998856 9.44e-01 100 chr1:161153929-161154429 7.36e-01 100 chr1:91501059-91501559 2.24e-02 41_[-7(4.12e-05)]_16 chr1:228842089-228842589 4.36e-01 100 chr1:173407800-173408300 5.82e-01 100 chr12:56041873-56042373 7.51e-02 52_[-6(1.48e-05)]_17 chr17:7252304-7252804 8.89e-03 18_[+6(3.17e-05)]_51 chr8:630857-631357 3.67e-01 100 chr1:147928358-147928858 7.88e-01 100 chr2:169364417-169364917 1.32e-10 1_[-1(2.69e-15)]_25_[+2(8.87e-05)]_\ 10 chr4:151099416-151099916 3.31e-01 100 chr3:194672271-194672771 5.77e-01 100 chr2:223957155-223957655 5.86e-02 5_[-6(2.07e-05)]_64 chr18:46173613-46174113 5.06e-10 11_[-8(1.78e-14)]_16_[+6(4.32e-05)] chr4:101201293-101201793 7.99e-04 23_[-2(5.34e-07)]_55 chr22:17368354-17368854 1.86e-01 62_[-6(2.42e-06)]_7 chr17:76671154-76671654 7.57e-05 24_[-1(2.51e-09)]_34 chr1:1511680-1512180 9.53e-01 100 chr18:59516325-59516825 9.91e-02 100 chr17:80414977-80415477 1.51e-03 25_[+6(8.24e-08)]_44 chr1:228647974-228648474 1.72e-01 100 chr12:54280750-54281250 4.97e-01 100 chr15:66883319-66883819 1.45e-02 78_[+3(7.05e-06)]_6 chr17:26603646-26604146 1.41e-03 50_[+3(3.72e-06)]_34 chr1:234373313-234373813 8.90e-01 100 chr4:105708399-105708899 3.24e-01 50_[-6(3.13e-06)]_19 chr19:48390561-48391061 1.16e-02 29_[-4(4.94e-07)]_55 chr2:165953811-165954311 1.11e-06 30_[+7(9.26e-11)]_27 chr1:150235783-150236283 3.54e-04 57_[+1(5.50e-12)]_1 chr19:41859688-41860188 1.55e-01 100 chr5:134004864-134005364 9.89e-01 100 chr18:11857308-11857808 2.39e-03 6_[+7(1.43e-05)]_51 chr5:32367212-32367712 9.50e-24 8_[-4(1.57e-08)]_10_[+1(3.03e-16)]_\ 24 chr13:51584502-51585002 3.89e-01 4_[-4(5.25e-05)]_80 chr13:110870213-11087071 1.10e-01 38_[-2(1.90e-05)]_40 chr19:58519581-58520081 3.44e-01 48_[+6(3.13e-06)]_21 chr17:7836703-7837203 1.23e-02 38_[+8(6.24e-05)]_20 chr6:30907738-30908238 2.97e-01 100 chr12:120446191-12044669 7.54e-02 100 chr5:98929210-98929710 8.51e-01 100 chr6:44313084-44313584 1.04e-01 48_[+7(8.57e-05)]_9 chr10:5977561-5978061 5.34e-01 100 chr15:30023747-30024247 5.09e-09 19_[-3(7.91e-05)]_7_[-2(1.15e-09)]_\ 36 chr19:29715286-29715786 6.09e-01 100 chr3:61118775-61119275 8.92e-02 100 chr1:25998149-25998649 5.42e-02 71_[-2(7.50e-05)]_7 chr10:100286239-10028673 3.61e-01 100 chr1:150010424-150010924 2.45e-01 50_[-6(2.30e-05)]_19 chr13:111153224-11115372 1.58e-01 14_[+6(8.18e-07)]_55 chr1:45521526-45522026 5.00e-03 10_[+6(2.94e-08)]_59 chr15:74889963-74890463 5.34e-01 66_[+4(5.88e-05)]_18 chr1:205211388-205211888 6.77e-01 100 chr1:232678474-232678974 2.66e-02 69_[+10(1.60e-05)]_9 chr11:66002006-66002506 9.76e-01 100 chr19:58305205-58305705 4.04e-01 100 chr1:42335255-42335755 6.32e-01 24_[+6(2.56e-05)]_45 chr5:34007592-34008092 9.61e-01 100 chr5:14664164-14664664 2.44e-02 58_[-6(2.42e-06)]_11 chr19:40605303-40605803 3.95e-02 10_[+6(1.42e-08)]_59 chr19:49085358-49085858 6.50e-01 100 chr3:23917023-23917523 7.36e-01 100 chr3:193970363-193970863 1.43e-32 12_[+3(1.68e-06)]_1_[+1(1.52e-29)]_\ 29 chr19:36572879-36573379 1.90e-04 17_[+1(8.06e-09)]_41 chr6:20437619-20438119 3.38e-02 8_[-2(5.34e-07)]_70 chr17:51153343-51153843 3.07e-01 100 chr7:149125908-149126408 8.79e-01 100 chr1:183471821-183472321 2.01e-04 29_[+7(8.96e-10)]_28 chr22:24555570-24556070 7.83e-01 100 chr19:5690219-5690719 1.45e-02 52_[-6(4.59e-07)]_17 chr12:120291424-12029192 6.13e-08 54_[-9(1.14e-08)]_30 chr18:33578967-33579467 9.57e-03 39_[+8(7.93e-05)]_19 chr17:38825319-38825819 6.84e-01 100 chr19:37467049-37467549 9.84e-01 100 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chr9:133417875-133418375 5.68e-01 100 chr1:163321634-163322134 1.82e-01 6_[-7(4.01e-05)]_51 chr10:22229175-22229675 4.64e-01 100 chr12:68565375-68565875 1.04e-04 23_[-2(1.24e-08)]_55 chr19:44259665-44260165 9.69e-01 100 chr17:77233768-77234268 3.73e-02 47_[+1(4.23e-05)]_11 chr19:1383522-1384022 6.14e-01 41_[-5(5.35e-05)]_9 chr7:142454775-142455275 1.03e-11 10_[-9(7.25e-06)]_16_[-2(1.84e-10)]_\ 36 chr1:244970713-244971213 4.01e-03 46_[+6(1.17e-08)]_23 chrX:24210175-24210675 1.22e-03 57_[+2(1.30e-07)]_21 chr17:78558290-78558790 1.54e-01 41_[-1(2.38e-05)]_17 chr1:6404484-6404984 6.97e-37 8_[-4(8.08e-10)]_[+1(1.52e-29)]_34 chr1:148522537-148523037 4.93e-24 2_[+5(2.46e-28)]_12_[+9(2.44e-05)]_\ 20 chr1:40257706-40258206 8.09e-01 100 chr12:54201208-54201708 5.08e-01 100 chr1:236097028-236097528 3.62e-01 48_[+7(4.91e-06)]_9 chr7:127707499-127707999 1.47e-11 19_[-2(8.37e-08)]_17_[-1(6.02e-11)] chr19:34134473-34134973 2.55e-01 29_[-6(2.42e-06)]_40 chr17:39980671-39981171 6.89e-01 100 chrUn_KI270466v1:230-730 7.92e-16 11_[+9(2.14e-11)]_4_[-3(8.52e-07)]_\ [-1(8.59e-11)]_11 chr10:93209036-93209536 2.63e-02 21_[-10(4.01e-05)]_34_\ [-10(4.01e-05)]_1 chr17:30906037-30906537 9.88e-01 100 chr9:33447109-33447609 1.91e-01 100 chr3:15933388-15933888 7.82e-04 23_[+3(6.05e-06)]_61 chr19:33320585-33321085 2.44e-06 6_[-2(3.36e-05)]_2_[-2(6.21e-09)]_\ 48 chr1:63523057-63523557 9.67e-01 100 chr19:36837972-36838472 1.37e-02 100 chr21:26834370-26834870 2.95e-05 28_[+2(1.42e-07)]_50 chr13:62642919-62643419 5.31e-24 2_[-7(1.45e-18)]_2_[+8(4.07e-18)]_\ 11 chr15:101945846-10194634 1.54e-31 13_[+9(5.18e-05)]_[-1(1.52e-29)]_29 chrX:72276879-72277379 1.27e-01 47_[+6(3.17e-05)]_22 chr15:65610912-65611412 2.09e-01 14_[-3(6.40e-05)]_1_[-3(6.40e-05)]_\ 53 chr12:131487549-13148804 4.98e-07 42_[+3(6.27e-07)]_42 chr7:139367700-139368200 2.22e-05 29_[-2(2.14e-08)]_49 chr2:37320978-37321478 1.10e-09 31_[+2(4.05e-10)]_47 chr17:49628460-49628960 2.47e-14 [+3(1.68e-05)]_18_[+10(2.29e-13)]_\ [+2(8.86e-09)]_22 chr5:69415567-69416067 2.06e-02 14_[+2(1.90e-05)]_10_[-8(7.80e-05)]_\ 12 chr6:73803389-73803889 4.10e-09 5_[-2(4.97e-07)]_8_[-7(1.54e-09)]_\ 22 chr3:150603320-150603820 4.73e-01 [-6(5.16e-06)]_69 chr19:35881952-35882452 6.12e-30 1_[+3(6.85e-09)]_[+1(2.98e-27)]_41 chr7:133298029-133298529 1.66e-06 37_[+2(2.95e-09)]_41 chr7:128944788-128945288 4.54e-05 6_[-2(9.27e-07)]_17_[-9(1.90e-05)]_\ 39 chr17:61927496-61927996 7.14e-01 100 chr10:102503478-10250397 1.52e-02 75_[+2(2.32e-07)]_3 chr10:86867098-86867598 5.62e-16 8_[+10(3.83e-12)]_1_[+2(1.66e-12)]_\ 47 chr12:57111954-57112454 1.27e-05 3_[+1(6.52e-08)]_12_[+1(2.00e-12)]_\ 1 chr13:110965217-11096571 5.42e-25 9_[+8(2.33e-18)]_3_[-7(9.23e-20)]_3 chr12:106145843-10614634 1.00e-01 100 chr9:1004975-1005475 2.09e-06 6_[-1(5.61e-06)]_[-2(4.75e-10)]_30 chr8:31131476-31131976 2.43e-01 100 chrX:73943995-73944495 8.03e-01 100 chr13:51802069-51802569 3.21e-03 52_[-2(4.29e-07)]_26 chrUn_KI270467v1:1949-24 3.39e-12 5_[-3(2.91e-07)]_1_[-1(6.36e-09)]_5_\ [+9(4.73e-10)]_15 chr10:13375272-13375772 2.27e-06 44_[+2(1.76e-09)]_34 chr13:71500064-71500564 3.88e-09 5_[+10(1.51e-05)]_8_[-2(3.36e-09)]_\ 43 chr12:62813137-62813637 2.82e-03 33_[-2(4.29e-07)]_45 chr9:653937-654437 2.12e-05 66_[+2(1.30e-11)]_12 chrUn_KI270467v1:3090-35 3.15e-16 7_[-1(3.08e-11)]_5_[+9(2.14e-11)]_\ 30 chr18:41955643-41956143 2.29e-01 100 chr18:25451182-25451682 5.23e-12 42_[+3(8.52e-07)]_6_[-2(9.95e-09)]_\ 14 chr10:126259832-12626033 3.48e-03 51_[+2(5.78e-08)]_27 chr1:230090040-230090540 9.12e-04 6_[-2(1.32e-09)]_72 chrUn_KI270467v1:2887-33 8.01e-14 1_[-1(4.68e-07)]_5_[+9(2.14e-11)]_\ 17_[+9(2.11e-06)]_3 chr20:58231625-58232125 1.94e-04 76_[+2(6.52e-10)]_2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************