# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:03 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP37.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:04 PDT 2018)
#        host: wotan
#        when: Thu May 10 18:06:56 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.205 C 0.293 G 0.299 T 0.204


MOTIF GAAATGCY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAATGCY   RGCATTTC         57          1   5.3e-017   1.7e-012
#         GAAATGCT   AGCATTTC         37          0   4.1e-012   1.3e-007
#         GAAATGCC   GGCATTTC         20          1   9.1e-006   2.9e-001

letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.7e-012
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.362069 0.000000 0.637931


MOTIF SMGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      SMGGAA     TTCCKS        204        108   1.6e-010   5.0e-006
#           CAGGAA     TTCCTG         56         22   4.5e-005   1.4e+000
#           CCGGAA     TTCCGG         61         28   1.9e-004   5.9e+000
#           GCGGAA     TTCCGC         60         29   4.3e-004   1.4e+001
#           GAGGAA     TTCCTC         69         38   1.1e-003   3.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 266 E= 5.0e-006
0.000000 0.488722 0.511278 0.000000
0.492481 0.507519 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 42.12 seconds