# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:04 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:05 PDT 2018) # host: wotan # when: Thu May 10 17:39:37 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.246 C 0.254 G 0.254 T 0.246 MOTIF RCTCCTA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RCTCCTA TAGGAGY 471 12 1.6e-191 4.6e-187 # ACTCCTA TAGGAGT 426 7 1.1e-168 3.1e-164 # GCTCCTA TAGGAGC 49 5 8.5e-011 2.4e-006 letter-probability matrix: alength= 4 w= 7 nsites= 489 E= 4.6e-187 0.895706 0.000000 0.104294 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAADRCCC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CAADRCCC GGGYHTTG 331 23 3.4e-096 9.6e-092 # CAAAACCC GGGTTTTG 165 5 3.2e-048 8.9e-044 # CAAAGCCC GGGCTTTG 84 6 3.6e-020 1.0e-015 # CAAGACCC GGGTCTTG 45 2 3.7e-012 1.0e-007 # CAATGCCC GGGCATTG 14 1 4.6e-004 1.3e+001 # CAAGGCCC GGGCCTTG 23 7 2.3e-003 6.6e+001 # CAATACCC GGGTATTG 13 2 3.5e-003 9.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 344 E= 9.6e-092 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.723837 0.000000 0.197674 0.078488 0.648256 0.000000 0.351744 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CATCCTK DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CATCCTK MAGGATG 182 18 1.9e-041 5.2e-037 # CATCCTT AAGGATG 150 9 1.5e-038 4.2e-034 # CATCCTG CAGGATG 35 9 4.0e-005 1.1e+000 letter-probability matrix: alength= 4 w= 7 nsites= 186 E= 5.2e-037 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.188172 0.811828 MOTIF CCAKGMAG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CCAKGMAG CTKCMTGG 64 7 1.5e-013 4.2e-009 # CCAGGCAG CTGCCTGG 22 1 2.4e-006 6.5e-002 # CCAGGAAG CTTCCTGG 29 5 1.5e-005 4.1e-001 # CCATGCAG CTGCATGG 8 0 3.8e-003 1.0e+002 # CCATGAAG CTTCATGG 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 4.2e-009 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.742857 0.257143 0.000000 0.000000 1.000000 0.000000 0.557143 0.442857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAGBCTTC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAGBCTTC GAAGVCTT 46 6 2.6e-009 7.1e-005 # AAGCCTTC GAAGGCTT 28 3 1.8e-006 4.9e-002 # AAGGCTTC GAAGCCTT 24 3 2.1e-005 5.6e-001 # AAGTCTTC GAAGACTT 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 7.1e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.468085 0.319149 0.212766 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGCCCY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATGCCCY RGGGCAT 61 14 7.2e-009 2.0e-004 # ATGCCCC GGGGCAT 29 5 1.5e-005 4.1e-001 # ATGCCCT AGGGCAT 33 9 1.1e-004 2.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 62 E= 2.0e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.467742 0.000000 0.532258 MOTIF CTWGGCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTWGGCA TGCCWAG 49 11 2.0e-007 5.4e-003 # CTTGGCA TGCCAAG 26 5 8.0e-005 2.2e+000 # CTAGGCA TGCCTAG 24 6 6.3e-004 1.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 5.4e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.480000 0.000000 0.000000 0.520000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AHCTGGCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AHCTGGCA TGCCAGDT 26 2 1.2e-006 3.2e-002 # ACCTGGCA TGCCAGGT 12 2 6.2e-003 1.7e+002 # AACTGGCA TGCCAGTT 7 0 7.7e-003 2.1e+002 # ATCTGGCA TGCCAGAT 7 0 7.7e-003 2.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.2e-002 1.000000 0.000000 0.000000 0.000000 0.269231 0.461538 0.000000 0.269231 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGTCMC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ATGTCMC GKGACAT 39 8 1.8e-006 4.9e-002 # ATGTCCC GGGACAT 21 4 4.0e-004 1.1e+001 # ATGTCAC GTGACAT 18 4 2.0e-003 5.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 39 E= 4.9e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.538462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 130.85 seconds