# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFHX2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFHX2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFHX2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFHX2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:08 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZFHX2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:09 PST 2017) # host: wotan # when: Mon Dec 18 16:16:25 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.201 C 0.289 G 0.307 T 0.203 MOTIF CDCCCACD DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CDCCCACD HGTGGGHG 414 154 1.2e-052 2.9e-048 # CACCCACA TGTGGGTG 202 83 2.8e-016 7.0e-012 # CACCCACT AGTGGGTG 77 25 3.6e-008 9.1e-004 # CGCCCACA TGTGGGCG 44 8 1.2e-007 2.9e-003 # CACCCACG CGTGGGTG 53 13 1.8e-007 4.5e-003 # CGCCCACG CGTGGGCG 33 5 1.5e-006 3.9e-002 # CTCCCACT AGTGGGAG 34 7 9.3e-006 2.3e-001 # CTCCCACA TGTGGGAG 55 20 1.9e-005 4.8e-001 # CTCCCACG CGTGGGAG 24 4 7.6e-005 1.9e+000 # CGCCCACT AGTGGGCG 23 5 4.0e-004 1.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 750 E= 2.9e-048 0.000000 1.000000 0.000000 0.000000 0.661333 0.000000 0.142667 0.196000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.601333 0.000000 0.169333 0.229333 MOTIF CCKCCTMC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCKCCTMC GKAGGMGG 95 26 1.1e-011 2.7e-007 # CCTCCTCC GGAGGAGG 56 16 5.9e-007 1.4e-002 # CCGCCTCC GGAGGCGG 35 7 5.4e-006 1.3e-001 # CCTCCTAC GTAGGAGG 14 3 6.1e-003 1.5e+002 # CCGCCTAC GTAGGCGG 7 0 7.7e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 2.7e-007 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.335570 0.664430 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.161074 0.838926 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATCYACCC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ATCYACCC GGGTRGAT 56 8 1.0e-010 2.5e-006 # ATCCACCC GGGTGGAT 45 7 1.9e-008 4.5e-004 # ATCTACCC GGGTAGAT 17 1 6.5e-005 1.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 2.5e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.797872 0.000000 0.202128 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACCTAY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CACCTAY RTAGGTG 86 26 1.1e-009 2.5e-005 # CACCTAC GTAGGTG 76 22 5.2e-009 1.3e-004 # CACCTAT ATAGGTG 20 4 7.0e-004 1.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 123 E= 2.5e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.829268 0.000000 0.170732 MOTIF GCCCACR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GCCCACR YGTGGGC 71 22 5.9e-008 1.4e-003 # GCCCACG CGTGGGC 30 3 5.2e-007 1.2e-002 # GCCCACA TGTGGGC 44 19 8.4e-004 2.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 94 E= 1.4e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.627660 0.000000 0.372340 0.000000 MOTIF AYAAA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AYAAA TTTRT 105 43 2.9e-008 6.9e-004 # ATAAA TTTAT 37 9 1.5e-005 3.4e-001 # ACAAA TTTGT 73 35 8.3e-005 2.0e+000 letter-probability matrix: alength= 4 w= 5 nsites= 124 E= 6.9e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.685484 0.000000 0.314516 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTGWAT DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGTGWAT ATWCACT 34 5 8.5e-007 2.0e-002 # AGTGAAT ATTCACT 15 0 2.8e-005 6.4e-001 # AGTGTAT ATACACT 19 5 3.0e-003 7.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 2.0e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.488372 0.000000 0.000000 0.511628 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF TCCATYCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TCCATYCA TGRATGGA 41 9 1.8e-006 4.1e-002 # TCCATCCA TGGATGGA 32 7 2.7e-005 6.2e-001 # TCCATTCA TGAATGGA 17 2 3.3e-004 7.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 4.1e-002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.727273 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 99.36 seconds