# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:04 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:05 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:55:36 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.222 C 0.276 G 0.276 T 0.226


MOTIF CAGGTRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CAGGTRA    TYACCTG         90          8   2.6e-020   8.7e-016
#          CAGGTGA    TCACCTG         71          8   8.4e-015   2.8e-010
#          CAGGTAA    TTACCTG         29          0   1.3e-009   4.3e-005

letter-probability matrix: alength= 4 w= 7 nsites= 181 E= 8.7e-016
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.182320 0.000000 0.817680 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGAGTCAB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGAGTCAB   VTGACTCA         64          3   6.7e-017   2.2e-012
#         TGAGTCAT   ATGACTCA         28          1   4.1e-008   1.3e-003
#         TGAGTCAG   CTGACTCA         25          2   2.3e-006   7.4e-002
#         TGAGTCAC   GTGACTCA         16          0   1.4e-005   4.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 2.2e-012
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.253333 0.346667 0.400000


MOTIF CAGGTGK DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CAGGTGK    MCACCTG        100         36   2.7e-009   8.8e-005
#          CAGGTGT    ACACCTG         71         20   1.1e-008   3.6e-004
#          CAGGTGG    CCACCTG         38         17   2.7e-003   8.6e+001

letter-probability matrix: alength= 4 w= 7 nsites= 250 E= 8.8e-005
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.284000 0.716000


MOTIF GGAARC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGAARC     GYTTCC         90         38   6.9e-007   2.2e-002
#           GGAAGC     GCTTCC         54         22   9.9e-005   3.2e+000
#           GGAAAC     GTTTCC         42         16   3.2e-004   1.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 110 E= 2.2e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.481818 0.000000 0.518182 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACCKGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACCKGC     GCMGGT         81         33   1.4e-006   4.4e-002
#           ACCGGC     GCCGGT         33         10   2.4e-004   7.7e+000
#           ACCTGC     GCAGGT         51         23   5.3e-004   1.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 125 E= 4.4e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.296000 0.704000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 87.92 seconds