# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:10 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZEB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:12 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:19:12 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.219 C 0.277 G 0.288 T 0.216


MOTIF VCAGGTR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     VCAGGTR    YACCTGB        335         99   2.3e-047   7.2e-043
#          GCAGGTG    CACCTGC        145         39   3.0e-018   9.3e-014
#          ACAGGTG    CACCTGT        104         19   4.0e-017   1.2e-012
#          CCAGGTG    CACCTGG         97         20   8.4e-015   2.6e-010
#          ACAGGTA    TACCTGT         55          9   7.1e-010   2.2e-005
#          CCAGGTA    TACCTGG         49          7   1.7e-009   5.4e-005
#          GCAGGTA    TACCTGC         64         22   1.5e-006   4.6e-002

letter-probability matrix: alength= 4 w= 7 nsites= 934 E= 7.2e-043
0.292291 0.255889 0.451820 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.265525 0.000000 0.734475 0.000000


MOTIF CAGGTR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CAGGTR     YACCTG         95         29   1.5e-010   4.3e-006
#           CAGGTG     CACCTG         76         22   5.2e-009   1.5e-004
#           CAGGTA     TACCTG         23          8   4.9e-003   1.4e+002

letter-probability matrix: alength= 4 w= 6 nsites= 161 E= 4.3e-006
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.192547 0.000000 0.807453 0.000000


MOTIF CCGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CCGGAA     TTCCGG         51         12   1.9e-007   5.6e-003
#           CCGGAA     TTCCGG         51         12   1.9e-007   5.6e-003

letter-probability matrix: alength= 4 w= 6 nsites= 58 E= 5.6e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGAAW DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AGGAAW     WTTCCT         73         26   4.6e-007   1.3e-002
#           AGGAAT     ATTCCT         32          7   2.7e-005   7.8e-001
#           AGGAAA     TTTCCT         42         19   1.8e-003   5.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 88 E= 1.3e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.500000 0.000000 0.000000 0.500000


# Stopping reason: E-value threshold exceeded
#    Running time: 57.28 seconds