******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB7A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:40603582-40604082 1.0000 100 chr1:211258802-211259302 1.0000 100 chrX:47218293-47218793 1.0000 100 chr19:10416652-10417152 1.0000 100 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1.0000 100 chr19:40750107-40750607 1.0000 100 chr10:93702410-93702910 1.0000 100 chr5:137754384-137754884 1.0000 100 chr15:72783616-72784116 1.0000 100 chr2:113583650-113584150 1.0000 100 chr17:78558263-78558763 1.0000 100 chr19:37655844-37656344 1.0000 100 chr1:234723898-234724398 1.0000 100 chr10:3314384-3314884 1.0000 100 chr10:100912912-10091341 1.0000 100 chr1:229342566-229343066 1.0000 100 chr6:131628059-131628559 1.0000 100 chr19:37218011-37218511 1.0000 100 chr1:155080826-155081326 1.0000 100 chr15:65792166-65792666 1.0000 100 chr22:41091632-41092132 1.0000 100 chr17:4967457-4967957 1.0000 100 chr17:4703926-4704426 1.0000 100 chr1:183471824-183472324 1.0000 100 chr5:138752884-138753384 1.0000 100 chr19:42220136-42220636 1.0000 100 chr19:41859740-41860240 1.0000 100 chr1:3900434-3900934 1.0000 100 chr19:35717304-35717804 1.0000 100 chr16:30957601-30958101 1.0000 100 chr19:53979825-53980325 1.0000 100 chr15:65868948-65869448 1.0000 100 chr19:40190863-40191363 1.0000 100 chr1:205750271-205750771 1.0000 100 chr19:38402988-38403488 1.0000 100 chr1:155000757-155001257 1.0000 100 chrX:53225048-53225548 1.0000 100 chr7:30594504-30595004 1.0000 100 chr5:96934815-96935315 1.0000 100 chr19:984319-984819 1.0000 100 chr1:10793923-10794423 1.0000 100 chr5:1950700-1951200 1.0000 100 chr1:224113876-224114376 1.0000 100 chr5:132963519-132964019 1.0000 100 chr8:630759-631259 1.0000 100 chr19:40602209-40602709 1.0000 100 chr1:155244585-155245085 1.0000 100 chr19:49850656-49851156 1.0000 100 chr19:44212436-44212936 1.0000 100 chr14:103105046-10310554 1.0000 100 chr13:113296742-11329724 1.0000 100 chrX:1392304-1392804 1.0000 100 chr3:9731329-9731829 1.0000 100 chr1:16644478-16644978 1.0000 100 chr16:30698085-30698585 1.0000 100 chr17:74514061-74514561 1.0000 100 chr1:26620545-26621045 1.0000 100 chr17:45148407-45148907 1.0000 100 chr19:39412542-39413042 1.0000 100 chr12:49060556-49061056 1.0000 100 chr6:113971028-113971528 1.0000 100 chr19:35947345-35947845 1.0000 100 chr7:102572210-102572710 1.0000 100 chr19:33796972-33797472 1.0000 100 chr19:35114569-35115069 1.0000 100 chr4:77075913-77076413 1.0000 100 chr19:39390713-39391213 1.0000 100 chr1:167936290-167936790 1.0000 100 chr8:1823319-1823819 1.0000 100 chr17:75515638-75516138 1.0000 100 chr15:72375757-72376257 1.0000 100 chr14:103520913-10352141 1.0000 100 chr16:2961757-2962257 1.0000 100 chr12:124914549-12491504 1.0000 100 chr17:82586098-82586598 1.0000 100 chr19:36604711-36605211 1.0000 100 chr21:39313493-39313993 1.0000 100 chr19:1383518-1384018 1.0000 100 chr14:22982571-22983071 1.0000 100 chr19:44071951-44072451 1.0000 100 chr19:35628796-35629296 1.0000 100 chr15:89334694-89335194 1.0000 100 chr1:125179946-125180446 1.0000 100 chr1:109484053-109484553 1.0000 100 chr19:39125750-39126250 1.0000 100 chr1:236097026-236097526 1.0000 100 chr12:12266890-12267390 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB7A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB7A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB7A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.176 C 0.324 G 0.324 T 0.176 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB7A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.176 C 0.324 G 0.324 T 0.176 ******************************************************************************** ******************************************************************************** MOTIF KGTGTGTGTGTGTGTGTGTGTG MEME-1 width = 22 sites = 77 llr = 1239 E-value = 4.8e-207 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGTGTGTGTGTGTGTGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:111:1:211121::2:1: pos.-specific C 1:11111::11:1:111::111 probability G 3a182819:9182918:a:818 matrix T 6:7:7:718:71616:9:8171 bits 2.5 2.3 2.0 1.8 * * * Relative 1.5 * * * * Entropy 1.3 * * *** (23.2 bits) 1.0 *** * **** * *** * 0.8 ********************** 0.5 ********************** 0.3 ********************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGTGTGTGTGTGTGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:33796972-33797472 + 77 2.07e-14 TGCCGCGCGg tgtgtgtgtgtgtgtgtgtgtg tg chr19:35947345-35947845 + 54 2.07e-14 GCACTGTTCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr1:10793923-10794423 + 55 2.07e-14 tgtgtatgcg tgtgtgtgtgtgtgtgtgtgtg CGCGCGCGCG chr19:53979825-53980325 + 34 2.07e-14 GGCGCGCACg tgtgtgtgtgtgtgtgtgtgtg tgtgtgcgcg chr10:101442022-10144252 + 75 2.07e-14 tctgtgtgta tgtgtgtgtgtgtgtgtgtgtg tAAA chr16:23408821-23409321 + 45 2.07e-14 TGTGCATGCg tgtgtgtgtgtgtgtgtgtgtg tgcgtgcatg chr10:79445948-79446448 + 48 2.07e-14 GCGCCCTCCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtATG chr16:981142-981642 + 7 2.07e-14 agagag tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr19:38226288-38226788 - 17 2.07e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TAGAAGTGAC chr11:73377017-73377517 + 54 2.07e-14 gtggtgtcag tgtgtgtgtgtgtgtgtgtgtg tctgCGCCTA chr1:156661323-156661823 + 34 2.07e-14 GCCCAGTCCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr7:100478079-100478579 + 73 2.07e-14 agagagagag tgtgtgtgtgtgtgtgtgtgtg tgtgtg chr12:57112002-57112502 - 22 2.07e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TGGTGTTGTG chr12:990680-991180 + 58 4.15e-14 AGGGGTCgtg tgtgtgtgtgtgtgagtgtgtg tgtgtgtgCA chr20:52972218-52972718 + 8 5.27e-14 gagggtg tgtgtgtgtgtttgtgtgtgtg tgcatatgtg chr5:93582512-93583012 + 63 1.23e-13 AGCGTAAgtg tgtgtgtgtgtatgtgtgtgtg tgtgtgACCA chr1:150235782-150236282 - 71 1.23e-13 ACTGCGGG TGTGTGTGTGTATGTGTGTGTG TATGTGTGTG chr1:184386510-184387010 - 78 8.48e-13 G TGTGTGTGTGTGTGTGTGTGGG CAGGTGTGTG chr12:56152411-56152911 + 76 1.26e-12 TGGGGGTGCG TGAgtgtgtgtgtgtgtgtgtg tgt chr10:62817092-62817592 - 2 4.63e-12 GTGGAGCGAG TGTGAGTGTGTGTGTATGTGTG T chr17:73310462-73310962 - 78 6.21e-12 G TGTGTGTGTGTGTGTGTGACTG GGGGAGGGGT chr3:194134813-194135313 - 27 1.67e-11 TGTGTGTGCG TGCGTGTGTGAGTGAGTGTGTG TGCGCGCGCC chr12:1605009-1605509 + 23 1.92e-11 tgggggaggg tgtgtgtgtgtgagagtgagtg tatgtgagag chr19:36916415-36916915 + 29 8.00e-11 ttagtgtggg tgtgtggttgtgtgtgtgagtg tgACGGCACG chr17:81398838-81399338 + 78 8.00e-11 GAGGGGAGAG Ggtgtgcgtgtgagtgtgtgtg t chr19:36604711-36605211 - 60 1.20e-10 GGAGGGAGAC TGTGTGATTGTGTTTGTGTGTG CCGTTCTGTG chr16:57628748-57629248 + 9 2.05e-10 tgtgagag tgtgtgagtgtgagtgtgtgag agtgagtgag chr6:16759810-16760310 - 3 2.67e-10 CGGAGCGCGG CGTGAGTGTGAGTGAGTGTGTG AG chr19:38224238-38224738 - 74 7.36e-10 GCGAA GGTGTGTGAGTAGGAGTGTGTG GGAGGCTGTG chr20:63532007-63532507 + 50 1.93e-09 tgtgtgtctg tgtctatgtgtatgtctgtgtg tgtcatgtga chr14:103105046-10310554 + 10 2.73e-09 AGCAGAGTT GGGGGGTGTGTGTGCGTGTGTG ATGGAGCTGA chr20:36092945-36093445 + 43 3.07e-09 TGGGTGAGGG TGCGTGTGTCTGCGTGTGTCTG TCGGTGAATG chr19:6532169-6532669 + 17 3.84e-09 tttgtgttcg tgtgggtgtgtgttcgtgtggg tgtttgtgtt chr6:31652032-31652532 - 78 4.32e-09 G TGTGTGTGTGTTTGGCTGTGGG TTAGTTGTGC chr21:45591146-45591646 - 27 1.04e-08 TATGTGGAGT GGTGTGTATCTATGTGTGTGTC TATGTGGAGT chr19:7197754-7198254 + 49 1.15e-08 gtgtgtccat ggtgggcgagcgtgtgtgtgtg tccatgatgg chr19:37595014-37595514 + 1 1.58e-08 . cgtgtgtgtgtgggtctgtgcg cgcgcgtgtc chr1:109100038-109100538 + 47 2.15e-08 TGTGAGTGGA CGCGTGAGTGTGTGAGTGTGCG CGCTTGGAGC chr22:45979272-45979772 - 25 2.39e-08 TGTGTTTTGT GTCGTGTGTGCGTGTGTGTGTC GTGTGTGTGT chr9:135967606-135968106 + 36 3.23e-08 gggcgtgttg tgtgcatgtgtgcatatgtgtg cactgtgtat chr12:132597484-13259798 + 74 3.57e-08 tgtgtatctc tgtctctgtctttgtgtgtctc tgtct chr6:158852897-158853397 - 40 4.35e-08 TGTGGCATAT GGTGTGTGAGTGTGTATGTTGT ACTGTGTGTG chr2:172098601-172099101 + 4 4.80e-08 GAG TGTGACTGTGAGAGTGTGTATC AGTATGGGTG chr1:234723898-234724398 + 2 9.41e-08 a tgtgtgtgtgagagagagagag agagagaaat chr1:185156973-185157473 + 53 9.41e-08 ACAGTTGGTG GGGCGGGGTGTGTGTGTGTGTT GGGAGGCGGG chr19:36772365-36772865 - 48 1.13e-07 GGGTCTCCGT GGTCTGTGACTGTGGCTGTGTG GTGCTGACTC chr1:228782557-228783057 + 78 1.13e-07 gtatgtgttg tgtgcatgtgggtgcatgtgtg t chr10:100286279-10028677 - 48 1.36e-07 CTCCGTCTCG GGTGGGCGAGGTTGAGTGTGTG GTGGCTCACC chr1:40691616-40692116 + 51 1.36e-07 CCTGAGCAGA GGTGTGTGAGTGTGCGGGAGTT TCTGTGCGAG chr10:101830536-10183103 - 31 1.50e-07 GCCCCAGGCC CGCGCGCGTGTGTGTGTGTATG GGGAGGCGTG chr22:49975477-49975977 + 2 2.80e-07 g tgtgtgtgtcatgtgttgtgtg gtgtgtgctg chr1:156500068-156500568 - 9 4.32e-07 CCTAGGGGAC TGTTTGTGTCAGGGAGTCTGTC GTGGGGGA chr7:140696617-140697117 + 15 8.43e-07 TGGAGATGGT GGAGTCCGTCAGTGAGTGTGGG GCTGGGGATG chr19:47231259-47231759 - 21 9.92e-07 TGGATCTGTG GGTCCCAGTCAGTGTGTGTGTC CGACTGTCCC chr22:20496077-20496577 - 63 1.17e-06 GGGGAGACAG GGAGGGAGTGAATGAGTGAGGG AGGAAGGGAA chr2:241881307-241881807 + 79 1.48e-06 GGTAGGGGCG TGGCCCAGCgtgtgtgtgtgtg chr19:36215066-36215566 + 71 1.48e-06 GGGCCTCTGA GGCGGGTTTGAGCGAGTGTGAC CGAGTTTG chr19:42279585-42280085 + 55 2.18e-06 aggaagagct tgtgaaggtgcaggagtgagTC TTGGTAACTG chr19:40090508-40091008 - 23 2.18e-06 CGGATCCCCA GGCGTGTGTGTGCGCGGGTATC AGAGGAGGGG chr19:42283254-42283754 + 56 2.18e-06 GCCCGTGGGG TGTGTAGGAGATAATGGGTGTG GCACGAAagt chr15:74546157-74546657 + 23 2.35e-06 CTTGGCAGCT GGCCAGCGTCTGCGTGTGTGCG GTCGTTCCTA chr5:177311901-177312401 - 38 3.42e-06 CCAATGAGCC GGCGTGGGTGGATGAGTGAGGC GGGCAAGAAG chr17:79810338-79810838 - 29 3.96e-06 GGGGGTGCGT GGGGTGGGAGTGGGAGCGTGCG CGGAGCGGGA chr5:36241792-36242292 + 76 4.58e-06 TAGTGGGTtt tgtttgtttgtttattcgtttC ACT chr6:85643017-85643517 - 13 7.53e-06 AGCGAGCGAG GGAGGGAGTGAGGGAGCGTGCG AGCCAGAAGG chr21:37073407-37073907 + 28 8.07e-06 GGCCCTGGGA TGCCGGTGCGAGGGTGTGAGTA GTCCCTTTGT chr1:31937347-31937847 - 68 9.26e-06 ATGGGTGTGT GGGGAGCGTGTGGGCATGAGGG GTGGTGGTAG chr9:18976696-18977196 - 13 9.91e-06 TTCACATTTG TTTTGGTTTGTGGTTTTGTGGG GTCGTTCCTG chr16:88443066-88443566 - 59 9.91e-06 GATTCCCGCC TGTCTGTCCCCTTTAGTGTGTG GAGGTGCCGG chr17:74514061-74514561 + 57 1.30e-05 ggtgatgtca tgtgggggtggtcatgtgatag gtgatgtcat chr5:57174042-57174542 + 23 1.48e-05 GGGGAGTGCC CGTGTCCGTGTTGGGGTTTGAG GGGTCGGGAG chr17:78254349-78254849 + 56 1.48e-05 GCTCCCTCGC GGCGGGCGTGCGCGAGCGTCTG CGAACGGGCC chr1:244969768-244970268 + 73 1.58e-05 GAGGGGGCGA GGGGTGTGTGCGCGCGCGTGCT GTCCCC chr1:11980216-11980716 + 22 1.58e-05 GGCGCTCGCT GGTGACGTAGTGAGTGTGATGG CCGCCGCGAG chr16:2777355-2777855 - 73 2.47e-05 AGCCCG GGTCAGGGAGCGGGGGTGACTG TCCCCAGCAC chr17:74514503-74515003 + 55 2.80e-05 tgatgggtga tgtgatggtgatcatgtgacag gtgatgtcat chr16:11915743-11916243 + 1 4.82e-05 . CGTGTGTGTGAGCGGATCTCCT CCCACCCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGTGTGTGTGTGTGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:33796972-33797472 2.1e-14 76_[+1]_2 chr19:35947345-35947845 2.1e-14 53_[+1]_25 chr1:10793923-10794423 2.1e-14 54_[+1]_24 chr19:53979825-53980325 2.1e-14 33_[+1]_45 chr10:101442022-10144252 2.1e-14 74_[+1]_4 chr16:23408821-23409321 2.1e-14 44_[+1]_34 chr10:79445948-79446448 2.1e-14 47_[+1]_31 chr16:981142-981642 2.1e-14 6_[+1]_72 chr19:38226288-38226788 2.1e-14 16_[-1]_62 chr11:73377017-73377517 2.1e-14 53_[+1]_25 chr1:156661323-156661823 2.1e-14 33_[+1]_45 chr7:100478079-100478579 2.1e-14 72_[+1]_6 chr12:57112002-57112502 2.1e-14 21_[-1]_57 chr12:990680-991180 4.1e-14 57_[+1]_21 chr20:52972218-52972718 5.3e-14 7_[+1]_71 chr5:93582512-93583012 1.2e-13 62_[+1]_16 chr1:150235782-150236282 1.2e-13 70_[-1]_8 chr1:184386510-184387010 8.5e-13 77_[-1]_1 chr12:56152411-56152911 1.3e-12 75_[+1]_3 chr10:62817092-62817592 4.6e-12 1_[-1]_77 chr17:73310462-73310962 6.2e-12 77_[-1]_1 chr3:194134813-194135313 1.7e-11 26_[-1]_52 chr12:1605009-1605509 1.9e-11 22_[+1]_56 chr19:36916415-36916915 8e-11 28_[+1]_50 chr17:81398838-81399338 8e-11 77_[+1]_1 chr19:36604711-36605211 1.2e-10 59_[-1]_19 chr16:57628748-57629248 2.1e-10 8_[+1]_70 chr6:16759810-16760310 2.7e-10 2_[-1]_76 chr19:38224238-38224738 7.4e-10 73_[-1]_5 chr20:63532007-63532507 1.9e-09 49_[+1]_29 chr14:103105046-10310554 2.7e-09 9_[+1]_69 chr20:36092945-36093445 3.1e-09 42_[+1]_36 chr19:6532169-6532669 3.8e-09 16_[+1]_62 chr6:31652032-31652532 4.3e-09 77_[-1]_1 chr21:45591146-45591646 1e-08 26_[-1]_52 chr19:7197754-7198254 1.2e-08 48_[+1]_30 chr19:37595014-37595514 1.6e-08 [+1]_78 chr1:109100038-109100538 2.2e-08 46_[+1]_32 chr22:45979272-45979772 2.4e-08 24_[-1]_54 chr9:135967606-135968106 3.2e-08 35_[+1]_43 chr12:132597484-13259798 3.6e-08 73_[+1]_5 chr6:158852897-158853397 4.4e-08 39_[-1]_39 chr2:172098601-172099101 4.8e-08 3_[+1]_75 chr1:234723898-234724398 9.4e-08 1_[+1]_77 chr1:185156973-185157473 9.4e-08 52_[+1]_26 chr19:36772365-36772865 1.1e-07 47_[-1]_31 chr1:228782557-228783057 1.1e-07 77_[+1]_1 chr10:100286279-10028677 1.4e-07 47_[-1]_31 chr1:40691616-40692116 1.4e-07 50_[+1]_28 chr10:101830536-10183103 1.5e-07 30_[-1]_48 chr22:49975477-49975977 2.8e-07 1_[+1]_77 chr1:156500068-156500568 4.3e-07 8_[-1]_70 chr7:140696617-140697117 8.4e-07 14_[+1]_64 chr19:47231259-47231759 9.9e-07 20_[-1]_58 chr22:20496077-20496577 1.2e-06 62_[-1]_16 chr2:241881307-241881807 1.5e-06 78_[+1] chr19:36215066-36215566 1.5e-06 70_[+1]_8 chr19:42279585-42280085 2.2e-06 54_[+1]_24 chr19:40090508-40091008 2.2e-06 22_[-1]_56 chr19:42283254-42283754 2.2e-06 55_[+1]_23 chr15:74546157-74546657 2.4e-06 22_[+1]_56 chr5:177311901-177312401 3.4e-06 37_[-1]_41 chr17:79810338-79810838 4e-06 28_[-1]_50 chr5:36241792-36242292 4.6e-06 75_[+1]_3 chr6:85643017-85643517 7.5e-06 12_[-1]_66 chr21:37073407-37073907 8.1e-06 27_[+1]_51 chr1:31937347-31937847 9.3e-06 67_[-1]_11 chr9:18976696-18977196 9.9e-06 12_[-1]_66 chr16:88443066-88443566 9.9e-06 58_[-1]_20 chr17:74514061-74514561 1.3e-05 56_[+1]_22 chr5:57174042-57174542 1.5e-05 22_[+1]_56 chr17:78254349-78254849 1.5e-05 55_[+1]_23 chr1:244969768-244970268 1.6e-05 72_[+1]_6 chr1:11980216-11980716 1.6e-05 21_[+1]_57 chr16:2777355-2777855 2.5e-05 72_[-1]_6 chr17:74514503-74515003 2.8e-05 54_[+1]_24 chr16:11915743-11916243 4.8e-05 [+1]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGTGTGTGTGTGTGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGTGTGTGTGTGTGTGTGTGTG width=22 seqs=77 chr19:33796972-33797472 ( 77) TGTGTGTGTGTGTGTGTGTGTG 1 chr19:35947345-35947845 ( 54) TGTGTGTGTGTGTGTGTGTGTG 1 chr1:10793923-10794423 ( 55) TGTGTGTGTGTGTGTGTGTGTG 1 chr19:53979825-53980325 ( 34) TGTGTGTGTGTGTGTGTGTGTG 1 chr10:101442022-10144252 ( 75) TGTGTGTGTGTGTGTGTGTGTG 1 chr16:23408821-23409321 ( 45) TGTGTGTGTGTGTGTGTGTGTG 1 chr10:79445948-79446448 ( 48) TGTGTGTGTGTGTGTGTGTGTG 1 chr16:981142-981642 ( 7) TGTGTGTGTGTGTGTGTGTGTG 1 chr19:38226288-38226788 ( 17) TGTGTGTGTGTGTGTGTGTGTG 1 chr11:73377017-73377517 ( 54) TGTGTGTGTGTGTGTGTGTGTG 1 chr1:156661323-156661823 ( 34) TGTGTGTGTGTGTGTGTGTGTG 1 chr7:100478079-100478579 ( 73) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57112002-57112502 ( 22) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:990680-991180 ( 58) TGTGTGTGTGTGTGAGTGTGTG 1 chr20:52972218-52972718 ( 8) TGTGTGTGTGTTTGTGTGTGTG 1 chr5:93582512-93583012 ( 63) TGTGTGTGTGTATGTGTGTGTG 1 chr1:150235782-150236282 ( 71) TGTGTGTGTGTATGTGTGTGTG 1 chr1:184386510-184387010 ( 78) TGTGTGTGTGTGTGTGTGTGGG 1 chr12:56152411-56152911 ( 76) TGAGTGTGTGTGTGTGTGTGTG 1 chr10:62817092-62817592 ( 2) TGTGAGTGTGTGTGTATGTGTG 1 chr17:73310462-73310962 ( 78) TGTGTGTGTGTGTGTGTGACTG 1 chr3:194134813-194135313 ( 27) TGCGTGTGTGAGTGAGTGTGTG 1 chr12:1605009-1605509 ( 23) TGTGTGTGTGTGAGAGTGAGTG 1 chr19:36916415-36916915 ( 29) TGTGTGGTTGTGTGTGTGAGTG 1 chr17:81398838-81399338 ( 78) GGTGTGCGTGTGAGTGTGTGTG 1 chr19:36604711-36605211 ( 60) TGTGTGATTGTGTTTGTGTGTG 1 chr16:57628748-57629248 ( 9) TGTGTGAGTGTGAGTGTGTGAG 1 chr6:16759810-16760310 ( 3) CGTGAGTGTGAGTGAGTGTGTG 1 chr19:38224238-38224738 ( 74) GGTGTGTGAGTAGGAGTGTGTG 1 chr20:63532007-63532507 ( 50) TGTCTATGTGTATGTCTGTGTG 1 chr14:103105046-10310554 ( 10) GGGGGGTGTGTGTGCGTGTGTG 1 chr20:36092945-36093445 ( 43) TGCGTGTGTCTGCGTGTGTCTG 1 chr19:6532169-6532669 ( 17) TGTGGGTGTGTGTTCGTGTGGG 1 chr6:31652032-31652532 ( 78) TGTGTGTGTGTTTGGCTGTGGG 1 chr21:45591146-45591646 ( 27) GGTGTGTATCTATGTGTGTGTC 1 chr19:7197754-7198254 ( 49) GGTGGGCGAGCGTGTGTGTGTG 1 chr19:37595014-37595514 ( 1) CGTGTGTGTGTGGGTCTGTGCG 1 chr1:109100038-109100538 ( 47) CGCGTGAGTGTGTGAGTGTGCG 1 chr22:45979272-45979772 ( 25) GTCGTGTGTGCGTGTGTGTGTC 1 chr9:135967606-135968106 ( 36) TGTGCATGTGTGCATATGTGTG 1 chr12:132597484-13259798 ( 74) TGTCTCTGTCTTTGTGTGTCTC 1 chr6:158852897-158853397 ( 40) GGTGTGTGAGTGTGTATGTTGT 1 chr2:172098601-172099101 ( 4) TGTGACTGTGAGAGTGTGTATC 1 chr1:234723898-234724398 ( 2) TGTGTGTGTGAGAGAGAGAGAG 1 chr1:185156973-185157473 ( 53) GGGCGGGGTGTGTGTGTGTGTT 1 chr19:36772365-36772865 ( 48) GGTCTGTGACTGTGGCTGTGTG 1 chr1:228782557-228783057 ( 78) TGTGCATGTGGGTGCATGTGTG 1 chr10:100286279-10028677 ( 48) GGTGGGCGAGGTTGAGTGTGTG 1 chr1:40691616-40692116 ( 51) GGTGTGTGAGTGTGCGGGAGTT 1 chr10:101830536-10183103 ( 31) CGCGCGCGTGTGTGTGTGTATG 1 chr22:49975477-49975977 ( 2) TGTGTGTGTCATGTGTTGTGTG 1 chr1:156500068-156500568 ( 9) TGTTTGTGTCAGGGAGTCTGTC 1 chr7:140696617-140697117 ( 15) GGAGTCCGTCAGTGAGTGTGGG 1 chr19:47231259-47231759 ( 21) GGTCCCAGTCAGTGTGTGTGTC 1 chr22:20496077-20496577 ( 63) GGAGGGAGTGAATGAGTGAGGG 1 chr2:241881307-241881807 ( 79) TGGCCCAGCGTGTGTGTGTGTG 1 chr19:36215066-36215566 ( 71) GGCGGGTTTGAGCGAGTGTGAC 1 chr19:42279585-42280085 ( 55) TGTGAAGGTGCAGGAGTGAGTC 1 chr19:40090508-40091008 ( 23) GGCGTGTGTGTGCGCGGGTATC 1 chr19:42283254-42283754 ( 56) TGTGTAGGAGATAATGGGTGTG 1 chr15:74546157-74546657 ( 23) GGCCAGCGTCTGCGTGTGTGCG 1 chr5:177311901-177312401 ( 38) GGCGTGGGTGGATGAGTGAGGC 1 chr17:79810338-79810838 ( 29) GGGGTGGGAGTGGGAGCGTGCG 1 chr5:36241792-36242292 ( 76) TGTTTGTTTGTTTATTCGTTTC 1 chr6:85643017-85643517 ( 13) GGAGGGAGTGAGGGAGCGTGCG 1 chr21:37073407-37073907 ( 28) TGCCGGTGCGAGGGTGTGAGTA 1 chr1:31937347-31937847 ( 68) GGGGAGCGTGTGGGCATGAGGG 1 chr9:18976696-18977196 ( 13) TTTTGGTTTGTGGTTTTGTGGG 1 chr16:88443066-88443566 ( 59) TGTCTGTCCCCTTTAGTGTGTG 1 chr17:74514061-74514561 ( 57) TGTGGGGGTGGTCATGTGATAG 1 chr5:57174042-57174542 ( 23) CGTGTCCGTGTTGGGGTTTGAG 1 chr17:78254349-78254849 ( 56) GGCGGGCGTGCGCGAGCGTCTG 1 chr1:244969768-244970268 ( 73) GGGGTGTGTGCGCGCGCGTGCT 1 chr1:11980216-11980716 ( 22) GGTGACGTAGTGAGTGTGATGG 1 chr16:2777355-2777855 ( 73) GGTCAGGGAGCGGGGGTGACTG 1 chr17:74514503-74515003 ( 55) TGTGATGGTGATCATGTGACAG 1 chr16:11915743-11916243 ( 1) CGTGTGTGTGAGCGGATCTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGTGTGTGTGTGTGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 8.64881 E= 4.8e-207 -1291 -205 0 176 -1291 -1291 159 -276 -176 -118 -205 204 -1291 -132 136 -218 -59 -232 -105 191 -144 -183 136 -376 -96 -147 -132 191 -376 -464 147 -118 -44 -305 -1291 224 -1291 -132 143 -1291 14 -183 -264 191 -76 -1291 122 -30 -96 -132 -105 182 -144 -1291 143 -144 41 -183 -205 176 -118 -264 136 -218 -376 -232 -305 232 -1291 -364 157 -376 4 -1291 -1291 221 -218 -183 134 -176 -118 -183 -132 199 -376 -118 127 -144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGTGTGTGTGTGTGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 77 E= 4.8e-207 0.000000 0.077922 0.324675 0.597403 0.000000 0.000000 0.974026 0.025974 0.051948 0.142857 0.077922 0.727273 0.000000 0.129870 0.831169 0.038961 0.116883 0.064935 0.155844 0.662338 0.064935 0.090909 0.831169 0.012987 0.090909 0.116883 0.129870 0.662338 0.012987 0.012987 0.896104 0.077922 0.129870 0.038961 0.000000 0.831169 0.000000 0.129870 0.870130 0.000000 0.194805 0.090909 0.051948 0.662338 0.103896 0.000000 0.753247 0.142857 0.090909 0.129870 0.155844 0.623377 0.064935 0.000000 0.870130 0.064935 0.233766 0.090909 0.077922 0.597403 0.077922 0.051948 0.831169 0.038961 0.012987 0.064935 0.038961 0.883117 0.000000 0.025974 0.961039 0.012987 0.181818 0.000000 0.000000 0.818182 0.038961 0.090909 0.818182 0.051948 0.077922 0.090909 0.129870 0.701299 0.012987 0.142857 0.779221 0.064935 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGTGTGTGTGTGTGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- [TG]GTGTGTGTGTGTG[TA]GTGTGTG -------------------------------------------------------------------------------- Time 859.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGTGTGTGTGT MEME-2 width = 16 sites = 41 llr = 561 E-value = 1.1e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::1:221:::::::1 pos.-specific C 2:1::::11:11::1: probability G 728:a181718:9:9: matrix T :7:9:7:82918:a:8 bits 2.5 * 2.3 * 2.0 * 1.8 * * * * Relative 1.5 ** * * * * Entropy 1.3 *** * * * * * (19.7 bits) 1.0 * *** * * ***** 0.8 ******* ******* 0.5 **************** 0.3 **************** 0.0 ---------------- Multilevel GTGTGTGTGTGTGTGT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr19:35947345-35947845 + 77 1.12e-10 gtgtgtgtgt gtgtgtgtgtgtgtgt gtcgaagt chr16:23408821-23409321 + 76 1.12e-10 gtgcgtgcat gtgtgtgtgtgtgtgt gtgtatgtg chr16:981142-981642 + 30 1.12e-10 gtgtgtgtgt gtgtgtgtgtgtgtgt gtgtCGGGGG chr1:184386510-184387010 - 59 1.12e-10 GTGTGGGCAG GTGTGTGTGTGTGTGT ACGTGTGTGC chr12:57112002-57112502 - 45 1.12e-10 GAGCAAGACT GTGTGTGTGTGTGTGT GTGTGTGTGT chr20:52972218-52972718 + 44 5.18e-10 tatgtggggg gtgtgagtgtgtgtgt gcgaggaagc chr2:172098601-172099101 + 76 5.78e-09 AGTGTGCTCA GTGTGTGATTGTGTGT TTGCGCGCG chr22:45979272-45979772 - 9 1.05e-08 TGTGTGTGTC GTGTGTGTGTGTGTGG TGTGTGTT chr14:103105046-10310554 + 80 1.17e-08 AGAGCTGAGG CTGTGTGTGTGCGTGT TTGGC chr12:1605009-1605509 + 79 1.17e-08 gtgtttgtgc ctgtgtgagtgtgtgt ACTGCA chr19:7197754-7198254 + 4 1.73e-08 ggt gggagtgtgtgtgtgt ccccatggtg chr19:6532169-6532669 + 58 2.41e-08 ttgttcgttc gtgtgggtgtttgtgt tcatgtgggt chr6:158852897-158853397 - 23 2.41e-08 GTATGTTGTA CTGTGTGTGTGTGTAT ATGGTGTGGT chr20:63532007-63532507 + 27 3.00e-08 gatctgtttt gtgtgtctctgtgtgt gtgtctgtgt chr21:45591146-45591646 - 65 4.85e-08 ATGCGGAGTG GTATGTATCTGTGTGT GTGTCTTATG chr19:38226288-38226788 - 40 4.85e-08 CTAAGACTAG AGGAGTGTGTGTGTGT GTGTGTGTGT chr16:57628748-57629248 + 42 6.60e-08 gtgagtgaga atgtgagtgtgagtgt gagagtgtga chr1:228782557-228783057 + 49 7.53e-08 atgctgtgtg gggtgtgtgtttgtga tgtgtatgtg chr1:10793923-10794423 + 24 1.16e-07 gtgtgtgtgc gcgtgtgtgtgcgtgt ttgtatgtgt chr19:38224238-38224738 - 41 1.16e-07 GTGAGTATCC GCGTGAATGTGTGTGT AAACTGCCAT chr9:135967606-135968106 + 18 2.10e-07 GCGCGCGCGC Ctgtgtgtgggcgtgt tgtgtgcatg chr1:150235782-150236282 - 40 2.54e-07 GTGTGCGCGC GTGCGTGCGTGTGTGT GCGCGCGCTA chr12:57726093-57726593 + 84 2.82e-07 GGGGAGAGGG AGGTGAGTTTGTGTCT T chr7:100081494-100081994 - 2 3.39e-07 TCTGTCCCCG GTGTGTGGGTCTGTGA C chr10:62817092-62817592 - 69 4.08e-07 AGTGTAAGGT GTGTGAGCGGGTGTGT GAAGAGGGCA chr22:49975477-49975977 + 33 6.41e-07 ggtgtgtgct gtgtgtggtgttgtgt gtggtgtgtg chr10:101442022-10144252 + 58 7.04e-07 ctctctctct ctctgtctctgtgtgt atgtgtgtgt chr3:194134813-194135313 - 52 7.04e-07 CGGCCGGGCC GGGAGGATGTGTGTGT GCGTGCGTGT chr20:36092945-36093445 + 78 7.04e-07 GTGAATGTAT CTGTGAGAGGGTGTGT CCGAATG chr19:36604711-36605211 - 25 9.15e-07 GGCTGCGTCC GTGTGTGGTGGTGTGA GTGGGCGCGC chr12:132597484-13259798 + 2 9.15e-07 t ctgtgtatctctgtct ctctgtctct chr19:42283254-42283754 + 84 1.18e-06 TGTGGCACGA Aagtgtgtctgtatgt c chr5:139403787-139404287 - 26 2.86e-06 CGAAGGCGGG GTCAGGATCTGTGTGT CTCGCTTTAG chr1:109100038-109100538 + 30 3.10e-06 GGCGCGTGCA GGGTGAGTGTGAGTGG ACGCGTGAGT chr5:1950700-1951200 + 85 3.88e-06 TGCGTGTGTC ATCTGTGCGTGTGTCA chr17:45148407-45148907 + 20 4.19e-06 GCCAAAGGGG AGATGAGTTTGTCTGT CCTCTGCTGA chr17:4703926-4704426 - 19 4.19e-06 GCGGCCGTCG CGGTGTGTTTGCGTCA TCGCGCCACG chr10:75294692-75295192 + 48 4.49e-06 TTACGCTGTT GTGTATATTTCTCTGT CAGCACCGCG chr10:102504285-10250478 + 84 4.49e-06 ATAGAGTGAG GACTGGGGGTGTGTGT A chr10:79445948-79446448 + 71 6.92e-06 gtgtgtgtgt gtgtgtATGTCCTTCT CTTTCTCTCA chr1:156500068-156500568 - 58 1.45e-05 TCGCGAAGCG GGCCGTGTTTTCGTGT GGCGTTGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35947345-35947845 1.1e-10 76_[+2]_8 chr16:23408821-23409321 1.1e-10 75_[+2]_9 chr16:981142-981642 1.1e-10 29_[+2]_55 chr1:184386510-184387010 1.1e-10 58_[-2]_26 chr12:57112002-57112502 1.1e-10 44_[-2]_40 chr20:52972218-52972718 5.2e-10 43_[+2]_41 chr2:172098601-172099101 5.8e-09 75_[+2]_9 chr22:45979272-45979772 1e-08 8_[-2]_76 chr14:103105046-10310554 1.2e-08 79_[+2]_5 chr12:1605009-1605509 1.2e-08 78_[+2]_6 chr19:7197754-7198254 1.7e-08 3_[+2]_81 chr19:6532169-6532669 2.4e-08 57_[+2]_27 chr6:158852897-158853397 2.4e-08 22_[-2]_62 chr20:63532007-63532507 3e-08 26_[+2]_58 chr21:45591146-45591646 4.8e-08 64_[-2]_20 chr19:38226288-38226788 4.8e-08 39_[-2]_45 chr16:57628748-57629248 6.6e-08 41_[+2]_43 chr1:228782557-228783057 7.5e-08 48_[+2]_36 chr1:10793923-10794423 1.2e-07 23_[+2]_61 chr19:38224238-38224738 1.2e-07 40_[-2]_44 chr9:135967606-135968106 2.1e-07 17_[+2]_67 chr1:150235782-150236282 2.5e-07 39_[-2]_45 chr12:57726093-57726593 2.8e-07 83_[+2]_1 chr7:100081494-100081994 3.4e-07 1_[-2]_83 chr10:62817092-62817592 4.1e-07 68_[-2]_16 chr22:49975477-49975977 6.4e-07 32_[+2]_52 chr10:101442022-10144252 7e-07 57_[+2]_27 chr3:194134813-194135313 7e-07 51_[-2]_33 chr20:36092945-36093445 7e-07 77_[+2]_7 chr19:36604711-36605211 9.1e-07 24_[-2]_60 chr12:132597484-13259798 9.1e-07 1_[+2]_83 chr19:42283254-42283754 1.2e-06 83_[+2]_1 chr5:139403787-139404287 2.9e-06 25_[-2]_59 chr1:109100038-109100538 3.1e-06 29_[+2]_55 chr5:1950700-1951200 3.9e-06 84_[+2] chr17:45148407-45148907 4.2e-06 19_[+2]_65 chr17:4703926-4704426 4.2e-06 18_[-2]_66 chr10:75294692-75295192 4.5e-06 47_[+2]_37 chr10:102504285-10250478 4.5e-06 83_[+2]_1 chr10:79445948-79446448 6.9e-06 70_[+2]_14 chr1:156500068-156500568 1.5e-05 57_[-2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGTGTGTGTGT width=16 seqs=41 chr19:35947345-35947845 ( 77) GTGTGTGTGTGTGTGT 1 chr16:23408821-23409321 ( 76) GTGTGTGTGTGTGTGT 1 chr16:981142-981642 ( 30) GTGTGTGTGTGTGTGT 1 chr1:184386510-184387010 ( 59) GTGTGTGTGTGTGTGT 1 chr12:57112002-57112502 ( 45) GTGTGTGTGTGTGTGT 1 chr20:52972218-52972718 ( 44) GTGTGAGTGTGTGTGT 1 chr2:172098601-172099101 ( 76) GTGTGTGATTGTGTGT 1 chr22:45979272-45979772 ( 9) GTGTGTGTGTGTGTGG 1 chr14:103105046-10310554 ( 80) CTGTGTGTGTGCGTGT 1 chr12:1605009-1605509 ( 79) CTGTGTGAGTGTGTGT 1 chr19:7197754-7198254 ( 4) GGGAGTGTGTGTGTGT 1 chr19:6532169-6532669 ( 58) GTGTGGGTGTTTGTGT 1 chr6:158852897-158853397 ( 23) CTGTGTGTGTGTGTAT 1 chr20:63532007-63532507 ( 27) GTGTGTCTCTGTGTGT 1 chr21:45591146-45591646 ( 65) GTATGTATCTGTGTGT 1 chr19:38226288-38226788 ( 40) AGGAGTGTGTGTGTGT 1 chr16:57628748-57629248 ( 42) ATGTGAGTGTGAGTGT 1 chr1:228782557-228783057 ( 49) GGGTGTGTGTTTGTGA 1 chr1:10793923-10794423 ( 24) GCGTGTGTGTGCGTGT 1 chr19:38224238-38224738 ( 41) GCGTGAATGTGTGTGT 1 chr9:135967606-135968106 ( 18) CTGTGTGTGGGCGTGT 1 chr1:150235782-150236282 ( 40) GTGCGTGCGTGTGTGT 1 chr12:57726093-57726593 ( 84) AGGTGAGTTTGTGTCT 1 chr7:100081494-100081994 ( 2) GTGTGTGGGTCTGTGA 1 chr10:62817092-62817592 ( 69) GTGTGAGCGGGTGTGT 1 chr22:49975477-49975977 ( 33) GTGTGTGGTGTTGTGT 1 chr10:101442022-10144252 ( 58) CTCTGTCTCTGTGTGT 1 chr3:194134813-194135313 ( 52) GGGAGGATGTGTGTGT 1 chr20:36092945-36093445 ( 78) CTGTGAGAGGGTGTGT 1 chr19:36604711-36605211 ( 25) GTGTGTGGTGGTGTGA 1 chr12:132597484-13259798 ( 2) CTGTGTATCTCTGTCT 1 chr19:42283254-42283754 ( 84) AAGTGTGTCTGTATGT 1 chr5:139403787-139404287 ( 26) GTCAGGATCTGTGTGT 1 chr1:109100038-109100538 ( 30) GGGTGAGTGTGAGTGG 1 chr5:1950700-1951200 ( 85) ATCTGTGCGTGTGTCA 1 chr17:45148407-45148907 ( 20) AGATGAGTTTGTCTGT 1 chr17:4703926-4704426 ( 19) CGGTGTGTTTGCGTCA 1 chr10:75294692-75295192 ( 48) GTGTATATTTCTCTGT 1 chr10:102504285-10250478 ( 84) GACTGGGGGTGTGTGT 1 chr10:79445948-79446448 ( 71) GTGTGTATGTCCTTCT 1 chr1:156500068-156500568 ( 58) GGCCGTGTTTTCGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.7699 E= 1.1e-050 -27 -73 102 -1200 -185 -273 -56 195 -185 -141 136 -1200 -85 -273 -1200 228 -285 -1200 159 -1200 15 -1200 -173 200 -5 -273 127 -1200 -127 -214 -173 210 -1200 -114 102 15 -1200 -1200 -141 232 -1200 -173 131 -85 -185 -114 -1200 219 -285 -273 148 -285 -1200 -1200 -1200 250 -285 -141 140 -1200 -53 -1200 -273 223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 41 E= 1.1e-050 0.146341 0.195122 0.658537 0.000000 0.048780 0.048780 0.219512 0.682927 0.048780 0.121951 0.829268 0.000000 0.097561 0.048780 0.000000 0.853659 0.024390 0.000000 0.975610 0.000000 0.195122 0.000000 0.097561 0.707317 0.170732 0.048780 0.780488 0.000000 0.073171 0.073171 0.097561 0.756098 0.000000 0.146341 0.658537 0.195122 0.000000 0.000000 0.121951 0.878049 0.000000 0.097561 0.804878 0.097561 0.048780 0.146341 0.000000 0.804878 0.024390 0.048780 0.902439 0.024390 0.000000 0.000000 0.000000 1.000000 0.024390 0.121951 0.853659 0.000000 0.121951 0.000000 0.048780 0.829268 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGT MEME-2 regular expression -------------------------------------------------------------------------------- G[TG]GTGTGTGTGTGTGT -------------------------------------------------------------------------------- Time 1635.17 secs. ******************************************************************************** ******************************************************************************** MOTIF YYCTCCCYCYYCYYCYMYYYCY MEME-3 width = 22 sites = 144 llr = 1424 E-value = 1.2e-085 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYCTCCCYCYYCYYCYMYYYCY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:21::12:21::1:31:1:: pos.-specific C 7462676453465375435496 probability G ::111:12111:11::2::::: matrix T 3535233426434624165514 bits 2.5 2.3 2.0 1.8 Relative 1.5 Entropy 1.3 (14.3 bits) 1.0 * * * ** 0.8 ** ** * *** ***** 0.5 **** ** ******* ***** 0.3 **************** ***** 0.0 ---------------------- Multilevel CTCTCCCTCTTCCTCCCTCTCC consensus TCTA TTCTCCTTCTTACTC T sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCTCCCYCYYCYYCYMYYYCY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:389112-389612 + 74 2.72e-11 TGTGTCTGGC CTTTCCTTCTTCTTCTCTTCCC CGGCA chr5:77644615-77645115 + 34 1.51e-10 CTCCTTCCTC CTTTCTCTTTTTCTCCCTTTCC GTCCTCCACT chr1:155244585-155245085 - 66 2.06e-10 GCGCCGGCTC CTCTCTCTCTCTCTCTCTCTCT CGCTCGCTCT chr1:234723898-234724398 - 28 2.06e-10 CTCCCTTCCT CCCTCCCTCTCCCTCCATTTCT CTCTCTCTCT chr7:100478079-100478579 - 45 2.06e-10 CACACTCTCT CTCTCTCTCTCTCTCTCTCTCT CCCCCTCTTT chr10:69629821-69630321 + 2 1.47e-09 t ccctcctccttcttctccttct tttccacgtg chr19:17337038-17337538 + 57 6.26e-09 CTGTGCCAAA CTCTGTCCTTTCTTCCATTCCT TATTCCTATT chr6:41779980-41780480 - 19 1.21e-08 CCTTCAGACC CTCTCCCCTTCCCTTCGTTTCT CGCCCAACCC chr17:49495900-49496400 - 40 1.50e-08 GCTCTGTCTC CTTTCCTTCTGCTTCCATCTCT CTGCCGCCCT chr22:30246134-30246634 - 71 1.50e-08 TCCTCTTC TTCCCCCTCTCCTTCTCCTCCT CCTCCTCCTC chr22:20496077-20496577 + 18 1.84e-08 ccctccttca ctctctcattccttcccttcct atcttaccca chr19:3056270-3056770 - 36 2.25e-08 GTGTGGGCGT CTCTCCCTCCTCTTTCCCTCCC ACCTGCCTCT chr2:216372168-216372668 - 55 2.75e-08 CCTCCAGCTT CTTTTCCTCTCATCCCCTTTCC CTCCTCCATC chr2:219543645-219544145 - 7 3.35e-08 CCCCTTTAAC CTCCCCCTTCTCCTCCCTCTCC GGTAGC chr1:236395242-236395742 - 12 4.06e-08 TCCGCCTTCC CCTCCCTTCTTCTTCTCCTCCT TCGCTTCTTC chr1:66924916-66925416 + 57 4.06e-08 GTCCTCAGTC CCCTTTCTCTCCTTCCCCTCCC CCACGGCAGT chr5:37371061-37371561 - 38 8.49e-08 CCCTGTTCCC TCCCCTTTATCCTTCCCTTCCT TTCCCTCCCT chr12:54359150-54359650 - 8 8.49e-08 CGTTCGCACG CTCTCTCTCTTTCGCTGTCTCT TACAGGC chr19:42279585-42280085 - 28 8.49e-08 TCACAAGCTC TTCCTCCTCTCCTCCTCTTCCC CAAGCCATCT chr19:42220136-42220636 - 35 1.01e-07 GCGCGGCGCC CTCACCCGTTTCTCTTATCTCC TGCAGCCCCT chr10:102504285-10250478 - 62 1.43e-07 ACCCCCAGTC CTCACTCTATTCTCCTAATCCC GGTTAACCCC chr14:103520913-10352141 + 28 2.00e-07 CGCGGCCGGC Ccctccctcctcctcctcctcc tcctcGCCGC chr17:47649690-47650190 + 67 2.35e-07 agcctccctt ccttctttctccctccGCCTCC CGAGCACCAG chr6:111483779-111484279 + 74 2.76e-07 TACCGTGTTT TTCTCCCGCCCCCTTCCTTCCC TCTCG chr1:227318141-227318641 + 43 2.76e-07 tcccttccag ccctcccccgccttccctctcc tctcGCGCTC chr14:22982571-22983071 - 43 3.78e-07 CCTACCCCCA CACTCTTTCCTATTCCAATTCT TCAGTGTTGT chr1:183471824-183472324 - 44 3.78e-07 ACACTCAAAG TCTTCCCCCTTCTTATCACTCC TGCCGATTTC chr10:101694527-10169502 + 11 4.41e-07 CCTGACCCTC CATTCCTCCTTCTTCCCATACT CTCTTCCTTG chr19:35031013-35031513 - 7 4.41e-07 CCGTCTTCAT CTCTCCCTGTCCCTCCGTCTTT CCCGTC chr1:234608188-234608688 + 7 4.41e-07 CCTCTG CTCTCCGTCCCCTTTTCTCCCC TAGACCCCCT chr12:132597484-13259798 + 37 5.13e-07 tgtgtctctt ctgtctctgtctctccatctct gtctctgtgt chr20:48921228-48921728 + 49 5.95e-07 CCTTGCGCTT CTCTCCTCTCATCTCCATCACC ACCTCTCCCC chr1:226062668-226063168 - 71 7.96e-07 CAGGGAAA CTCGCTCCTCACCTCCATTTCT GGGCCAAAAA chr19:35748510-35749010 - 32 9.17e-07 CGTCAGGGTC CTCACCTGATTTCTCCACTTTC ACCTTCACAG chr1:30824110-30824610 - 75 9.17e-07 TACC TCTGTCCTTCTCCTCTCTCTCT GCGTGCCGTA chr19:13151269-13151769 - 34 9.17e-07 TGAGGCCCCC TTCATCCCATCTCTCCTCTTCC CAATTATTTC chr17:68511929-68512429 - 2 1.06e-06 GCTCACCTGC CCCTCCTTACCTGTCCCTCTCT G chr19:39414239-39414739 - 10 1.06e-06 GCGCAACTCC TTCCCCCTAATCTTCCACTTCC CAGTTGAGA chr19:11482291-11482791 + 59 1.06e-06 ACTCGCTCAT CCTTGCCGATTCTTCTGTCCCC GGCTGGGGTA chr17:82586098-82586598 - 11 1.39e-06 CTCCCTGTGG TCTCCCCTCTCCTCCTTTCCCC CCCGGCCCAC chr10:25934670-25935170 - 32 1.59e-06 CTCTTCGAGG TCCTCCCCTTACGTTTCCTTCC CAAGTTCACC chr19:58572946-58573446 + 50 1.59e-06 tccccgtttc tacaccctctcctcccttcccc tAGCGGTGGT chr7:139231141-139231641 - 37 1.81e-06 TCCTCTTGCT CTCTGTCGCTTTTCTTCCCTCC ACCACCCTCA chr20:37095872-37096372 - 51 2.35e-06 GAATCTGAGG TACATCTTCTTATCACATTTCC GGGGAGGGAC chr16:3264026-3264526 - 26 2.35e-06 ACAGTTCCTT TTTATTCTCTACCGCTACTTCC TCTTTATCTT chr13:113296742-11329724 + 17 2.67e-06 tctcccgcca ctactcttcctcttccttttcc GCGAACCCAG chr15:70097468-70097968 + 35 2.67e-06 GACCGGGGAG CTCTACGGCTTCCTTCCTTCCC CTCGGCCCGG chr15:99565573-99566073 - 50 2.67e-06 CCTTCCTCGC TTCTCCCCATCAGTTTCTTTTC AGGACTGAAT chr10:93702410-93702910 - 65 3.03e-06 TCCGGGCCGT TTCTCCCGCTGCCCTTGTTTCC CGGAGCTGTT chr19:2475388-2475888 - 5 3.03e-06 GTGATTTCGC TTCTCCCGGCCTCTCTGTTCCC GTCT chr17:59619511-59620011 + 11 3.03e-06 AAAAAAGTAG TCCCTCCGGTTCCTCTGTTTCC CCCCATGTGG chr15:72117548-72118048 - 14 3.03e-06 CCTCGGTGGC CTCGGCCTCTTCTGCCATCTCC GGTCCTACCC chr1:53220235-53220735 + 41 3.43e-06 TCAGCGCGCA CCCACTCGCTTCATCTCCTCCT GGCGCGAGCT chr5:93582512-93583012 + 18 3.87e-06 GCTAGGCGTT CTCCCCCTCGTCATCCCTTCCC CCTCTGGGGT chr5:150449640-150450140 - 50 3.87e-06 CAACCAGCCC TCTACCTCTTTTCGCTCTCCCT TAAGTAATAA chr6:113971028-113971528 - 77 4.37e-06 TG TCTTCTTCCTCATTTTAACACT GTGTATGGCG chr1:31937347-31937847 + 44 4.37e-06 TCCTCCCCCA TTTACTCACTCATTCTACCACC ACCCCTCATG chr19:49677012-49677512 - 11 4.37e-06 GCCGCCAAGA CCCCCCCTTTCTCCTCACTCCC CCGGGACCGC chr6:109382349-109382849 - 32 4.37e-06 TCCTTCGGCT TCCTCCCGACTCCCCTGCTTCC CCCCGTAGGA chr19:38336509-38337009 - 79 4.92e-06 . CCTTGCTCCTTATTCCGCCCCC TCCCTGTATT chr16:30065205-30065705 + 16 4.92e-06 TTCCGACTTT TCCATCCGCGTCCTCCACTTCC CCGTTCCGCC chr10:79067375-79067875 - 78 4.92e-06 A CACGCCCTCCTCTCCCACTTCC TCTTCCATAC chr10:101442022-10144252 + 36 5.53e-06 CTAATTGAAT TAGAAtctctctctctctctct ctctgtctct chr19:44113293-44113793 - 34 6.21e-06 GACGAGGTTT CTTTTCCCCTAATTCGATCACC AGTTCGTTAA chr19:10653973-10654473 + 25 6.21e-06 AGCCCCCCCC TTATCTCTTTTCGCCCCTCCCT CCCATTTGGG chr19:38736500-38737000 + 29 6.96e-06 CCTCGCCGAC CCCTCCCCAACTCTTCCTTCCC CATCTGCGCT chr6:26571601-26572101 - 10 9.71e-06 CACCTTACCC TTTGGCCTTTACTCCTATCTTT CCATGAATA chr16:30400043-30400543 - 31 9.71e-06 ACGCCCCCCA CACGCCCCCTCTTCCTCCTCCT TGCTGCCTTG chr1:996194-996694 - 52 9.71e-06 CAGCGGGGGG TCCTTTCTGTCCTCCCCACCCT GCATCCTGTG chr1:125179946-125180446 + 31 1.08e-05 TCTCTTCGAT TCCATTCGATAATTCCGTTTTT TTCCGTTTGG chr19:45092776-45093276 + 25 1.08e-05 CGTGGCCCTT CCTGCCCTTTGTTTCTCTCTTC ATGTCACCCG chr8:144020132-144020632 + 56 1.34e-05 TCAGGACCCT CTTCCCTGATAACCCTCTCCCC TCAGTGCCCT chr16:67246003-67246503 + 66 1.34e-05 GGCACCCACC CCGACTCTCTCTCCTCTTCTCC AGCACTGGAG chr17:77233837-77234337 - 33 1.48e-05 CTCATTTTTG CTGACCTCATCCCTCTATTTGT CAGAATGAAC chr19:36170520-36171020 + 28 1.48e-05 cagaacaata cttatttattatctcagtttct gcgagtgtag chr11:112961080-11296158 + 35 1.64e-05 CAGTGAGGTT CTCACCCCCGCCCCCCGCTCCT CGCTCCCATC chr12:8697295-8697795 - 23 1.64e-05 CCGTTGTACG CCCTCCCCGCCCTCACATTCCC TGCTTAGGCC chr14:23010160-23010660 + 25 1.64e-05 CGTCCTGTCA CCCTTTCCCATCTTTTTTTCTC AGTGAAACAA chr10:3314384-3314884 - 7 1.82e-05 TCTGTGAAGT CACTGTCCCCTTCCCTCACTCT GTGAAG chr1:20732249-20732749 + 65 1.82e-05 CGTTGCTCGC CTGTCATCCCTCTCCTCTTACT CGAGGACAAG chr3:181328959-181329459 + 58 1.82e-05 CTCAATTTCA CTTTATTGCCTCTTTGATTCCC AAAAGGATTA chr8:11201402-11201902 + 53 2.01e-05 CAGGGCTCCC CTTCCCCTCTTCCGTTGACCCC GAAACCCATC chr1:154558607-154559107 + 31 2.01e-05 TCCACGTGAT CTCTCCGTCTTTCCCGCCCCCC TGTTCTCGCC chr1:156114073-156114573 + 37 2.01e-05 GGGCACCAGC CTCAGCCCTCCCCCCACTTTCC TGGCTCCCAG chr14:23567416-23567916 + 50 2.01e-05 TCCGCGAGCT TCCTCCCCCGATTTCCATCTCA GGCAGCGGCA chr19:18291916-18292416 - 54 2.22e-05 TCCCCCCGGA TCCTTTCTCCCCCCCTCCCATT AGGGGAGGGG chr19:41859740-41860240 + 72 2.45e-05 ACAGGAGCTC TCTATCCTCTCTCTATTACACT CCGGGAG chr21:25607299-25607799 + 5 2.45e-05 CAAG TCCTTCTCCGCCCTCCTCCCCC GGAAACCGAA chr19:35154632-35155132 + 50 2.70e-05 GGGTAGGGGT TTGACCCCTTCCGCTCCTCTCC GCCCCCCATC chr19:39406212-39406712 + 39 2.70e-05 GTCTGTACCC CTCTGCGTCTCTCCCCGCCCCC ATCCGTCTGT chr12:56724907-56725407 + 66 2.70e-05 AAGCCTCCAA CTCTCCTTAACTCTCAGTCCCC GGGGCGGCTT chr19:40191762-40192262 - 72 2.97e-05 CCTTGGC CACCGCCCCCTCCTCCTCCTCC ATGGGGGAGG chr12:6689167-6689667 + 44 3.26e-05 ACCCCAGTTC CTCCACGCCCCCCTCCCTCCCC CCAACAGGCT chr7:100429303-100429803 - 30 3.26e-05 TATGTCCGGC CCTACTGATCTCCTTTGTCTCT GCCGCGCGAT chr7:100081494-100081994 - 19 3.26e-05 GAGGGGGAAC TTCCGTTCTTTGTTCTGTCCCC GGTGTGTGGG chr1:26620545-26621045 + 79 3.58e-05 GTAGTTAGGT CTGAGCGCCCACTTCCATTCCT chr12:68808031-68808531 - 12 3.58e-05 GCCCCTCGGG CTCGGCTTCTTGCTCCATCTTT CCGACACACA chr6:85643017-85643517 + 75 3.58e-05 ccagtccctg ccgagtcggctcctctctttct ctct chr12:57726093-57726593 - 20 3.58e-05 TCAACACGCC CCCTCTCCATTGTTTCCACACT CGGATTGCTC chr19:18058445-18058945 - 63 3.92e-05 CACCCTGAAT CCTCCCTCTTTCTGCCCACACT GCCCCACCTC chr17:39401732-39402232 + 76 3.92e-05 CCCTCTTCTG CCCCGTGTCCCCCTCTCCTCCC TCC chr12:1661943-1662443 + 60 4.29e-05 GGCCTCGCGG CCCCACCGCTGTCTTCCTCTCC CCTCCCGGAC chr12:57752249-57752749 - 8 4.29e-05 CCTCCGCCCC CTTACACTCTTCGCCCTCCTCC CAGTCGA chr13:111153234-11115373 - 4 4.69e-05 CGCCGCCTCC TCCTGTCCAGTCTTCGGTCTCT ACC chr10:101782951-10178345 + 58 4.69e-05 CCTCCGCATT CCCGCCTCACATCCCTACCTCT TACCGCCCCA chr19:37218011-37218511 - 6 5.12e-05 ACCCAGGCCG CTCACCGCGCACTTCCCCTACC CTTGA chr3:15860034-15860534 - 64 5.12e-05 GTGACCACCT CTCATCCCACTCCTTGGCTCCC CACCCTCCCC chr17:81398838-81399338 - 6 5.12e-05 AGGCCTGGGG TCCACACTAGCTCTCCCCCTCT CCCCA chr16:30698655-30699155 + 39 5.59e-05 GTGGCACGAA CCCTCCCTTCTCTCAGCCTTTC GCGGTCGGGT chr17:75456468-75456968 - 40 5.59e-05 GCTGGTCTTC CTCGCCCGCGTCCTCTCCCCTC CCAACCCCCT chr19:41310205-41310705 + 69 5.59e-05 CCCCCTCAGC TTTACCGGTCCTCTTCACTACT TTGCCCAGAT chr19:48363328-48363828 + 58 5.59e-05 AAAGCGCCCT CTCCACCTCCACGTCCCACCCT CCAGAAGCCG chr17:38558983-38559483 - 33 5.59e-05 TCCAGTTCCT TCCTGCCCTGCATCCCTTTCCC TGAGTCAGCG chr1:11980216-11980716 - 60 5.59e-05 CCCCGGCTTG CTCGCCCTCTCACCTTCACCTT CCCGGCCTCG chr16:30787047-30787547 - 49 6.09e-05 CCAGCCTCCT CCCTGCTCCCACCGCTGTCCCC TTTTTTCCCC chr1:229342566-229343066 - 39 6.64e-05 CCCCGCCGCT CCCCTCCCTCGCTCCTCCTCCC GCTCAGCCCC chr5:176388737-176389237 - 74 6.64e-05 CTCTA CTTCCTTCCCTCCGACATCACT GTCCTCTCCT chr5:36241792-36242292 - 31 6.64e-05 GGGGCCTCCA TTTCTTCCCCGCCCACCTTTCT CCCGCGTGGG chr17:64506506-64507006 - 22 6.64e-05 TTCCGGTGAG CTATTTCGTTTTGTATCCCTCC GCCGACGTCA chr1:224113876-224114376 - 70 7.22e-05 CCGCCGCCT CCTTCCTCTGCCATCCGCTCCT CCGCCGCTGC chr5:173057053-173057553 - 78 7.22e-05 G CCCTGTCTCCTCCCCTCTCAGT GACCCACCAC chr22:46762688-46763188 - 39 7.22e-05 GTCCAAGTTG CCCTCTCCAGACCCCCGACTCC ACCCGCAGCC chr19:17075852-17076352 - 28 7.22e-05 TCACCCCCCC CACGCCCTCGAACTCCCTCACC AGCTCCATCC chr12:30695471-30695971 + 40 7.84e-05 TAGTTTTCTT TTGACCCTCTCAGCCTCCTCTT CCGCGACCCC chr15:72230359-72230859 - 38 7.84e-05 TGCGTTCTGG TTCCCCTCCCGCGTCCATTCTC CATTCATGCG chr19:49850656-49851156 + 71 8.51e-05 CAGCTTGGTG TCGCCTTCGTTCTTCTGCCACC CCATTCGG chr17:29390099-29390599 - 39 9.23e-05 GCTGCCCAGC TTCCCCCCCTTTACCCGACACC ACTCCCCTCC chr12:48999327-48999827 + 1 9.23e-05 . CCTTCCCACTGCTGTTGTCCCC CAAGCCTGAT chr19:17309587-17310087 + 3 9.23e-05 CA CTCACCTGTGACCTTCGACCCC CGGACCCTAC chr17:81253428-81253928 + 31 9.99e-05 acatcaccat catcaccatcatctccatccct accaccaaca chr17:42388538-42389038 - 48 9.99e-05 TTCAGCAGGA CATTCCGGTCATCTTCCCTCCC TCCCCCCGGG chr22:29388135-29388635 + 39 9.99e-05 ggacccctga cccctcgccccACTTCTTCTCC TGGCTCGCCC chrX:47561184-47561684 - 35 1.08e-04 CTTGCCCGCC TATTCCTGTTACCCACCCCACC CCCGCTGTCG chr19:3035763-3036263 + 50 1.08e-04 ggagcagagg ttgcatctttctccctatttca cagataggta chr10:100286279-10028677 + 12 1.08e-04 GACAAGTGCA CTCCTCTCACCAGCCCGTTCCT GCCAGGTGAG chr15:84715938-84716438 + 38 1.17e-04 CAGGACCCCG CAGTGCTTGCACTTCCGCTTCC GGGGCGGGAG chr17:7844009-7844509 - 51 1.17e-04 AAAATCAGAC CCCTTTTAGTCCCCCAACTTCC GAGAAGTCGC chr4:77075913-77076413 - 75 1.26e-04 AACG TCCTCCCTCCTTCCATCCTAGT GCCAACGACT chr22:41091632-41092132 - 50 1.36e-04 TCTCTCCGAC CCGACTCCCCTCCGCACTCTCT GGCTCCCGCA chr19:39033050-39033550 - 61 1.47e-04 TGCTACCACG CCCAGCTAATTTTTGTATTTTT AGTAGAGACG chr5:139765278-139765778 + 20 1.83e-04 CACTACAATC TCGTTCTGCCCAGTATATTCCC ACCATGCAGC chr20:44475793-44476293 - 55 1.97e-04 CTCTGGTCCC CACTTCCGGTTATCCTTCCCTC TCAGGGGTCC chr10:93209002-93209502 + 52 2.59e-04 CTGTTTATGA TCTCACTGCTTATGATCTCACT GCTTATGATC chr9:18976696-18977196 + 75 2.77e-04 ctcacggCTG TTATCATCATCATCTTATCCTT TTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCTCCCYCYYCYYCYMYYYCY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:389112-389612 2.7e-11 73_[+3]_5 chr5:77644615-77645115 1.5e-10 33_[+3]_45 chr1:155244585-155245085 2.1e-10 65_[-3]_13 chr1:234723898-234724398 2.1e-10 27_[-3]_51 chr7:100478079-100478579 2.1e-10 44_[-3]_34 chr10:69629821-69630321 1.5e-09 1_[+3]_77 chr19:17337038-17337538 6.3e-09 56_[+3]_22 chr6:41779980-41780480 1.2e-08 18_[-3]_60 chr17:49495900-49496400 1.5e-08 39_[-3]_39 chr22:30246134-30246634 1.5e-08 70_[-3]_8 chr22:20496077-20496577 1.8e-08 17_[+3]_61 chr19:3056270-3056770 2.3e-08 35_[-3]_43 chr2:216372168-216372668 2.8e-08 54_[-3]_24 chr2:219543645-219544145 3.3e-08 6_[-3]_72 chr1:236395242-236395742 4.1e-08 11_[-3]_67 chr1:66924916-66925416 4.1e-08 56_[+3]_22 chr5:37371061-37371561 8.5e-08 37_[-3]_41 chr12:54359150-54359650 8.5e-08 7_[-3]_71 chr19:42279585-42280085 8.5e-08 27_[-3]_51 chr19:42220136-42220636 1e-07 34_[-3]_44 chr10:102504285-10250478 1.4e-07 61_[-3]_17 chr14:103520913-10352141 2e-07 27_[+3]_51 chr17:47649690-47650190 2.4e-07 66_[+3]_12 chr6:111483779-111484279 2.8e-07 73_[+3]_5 chr1:227318141-227318641 2.8e-07 42_[+3]_36 chr14:22982571-22983071 3.8e-07 42_[-3]_36 chr1:183471824-183472324 3.8e-07 43_[-3]_35 chr10:101694527-10169502 4.4e-07 10_[+3]_68 chr19:35031013-35031513 4.4e-07 6_[-3]_72 chr1:234608188-234608688 4.4e-07 6_[+3]_72 chr12:132597484-13259798 5.1e-07 36_[+3]_42 chr20:48921228-48921728 5.9e-07 48_[+3]_30 chr1:226062668-226063168 8e-07 70_[-3]_8 chr19:35748510-35749010 9.2e-07 31_[-3]_47 chr1:30824110-30824610 9.2e-07 74_[-3]_4 chr19:13151269-13151769 9.2e-07 33_[-3]_45 chr17:68511929-68512429 1.1e-06 1_[-3]_77 chr19:39414239-39414739 1.1e-06 9_[-3]_69 chr19:11482291-11482791 1.1e-06 58_[+3]_20 chr17:82586098-82586598 1.4e-06 10_[-3]_68 chr10:25934670-25935170 1.6e-06 31_[-3]_47 chr19:58572946-58573446 1.6e-06 49_[+3]_29 chr7:139231141-139231641 1.8e-06 36_[-3]_42 chr20:37095872-37096372 2.4e-06 50_[-3]_28 chr16:3264026-3264526 2.4e-06 25_[-3]_53 chr13:113296742-11329724 2.7e-06 16_[+3]_62 chr15:70097468-70097968 2.7e-06 34_[+3]_44 chr15:99565573-99566073 2.7e-06 49_[-3]_29 chr10:93702410-93702910 3e-06 64_[-3]_14 chr19:2475388-2475888 3e-06 4_[-3]_74 chr17:59619511-59620011 3e-06 10_[+3]_68 chr15:72117548-72118048 3e-06 13_[-3]_65 chr1:53220235-53220735 3.4e-06 40_[+3]_38 chr5:93582512-93583012 3.9e-06 17_[+3]_61 chr5:150449640-150450140 3.9e-06 49_[-3]_29 chr6:113971028-113971528 4.4e-06 76_[-3]_2 chr1:31937347-31937847 4.4e-06 43_[+3]_35 chr19:49677012-49677512 4.4e-06 10_[-3]_68 chr6:109382349-109382849 4.4e-06 31_[-3]_47 chr19:38336509-38337009 4.9e-06 78_[-3] chr16:30065205-30065705 4.9e-06 15_[+3]_63 chr10:79067375-79067875 4.9e-06 77_[-3]_1 chr10:101442022-10144252 5.5e-06 35_[+3]_43 chr19:44113293-44113793 6.2e-06 33_[-3]_45 chr19:10653973-10654473 6.2e-06 24_[+3]_54 chr19:38736500-38737000 7e-06 28_[+3]_50 chr6:26571601-26572101 9.7e-06 9_[-3]_69 chr16:30400043-30400543 9.7e-06 30_[-3]_48 chr1:996194-996694 9.7e-06 51_[-3]_27 chr1:125179946-125180446 1.1e-05 30_[+3]_48 chr19:45092776-45093276 1.1e-05 24_[+3]_54 chr8:144020132-144020632 1.3e-05 55_[+3]_23 chr16:67246003-67246503 1.3e-05 65_[+3]_13 chr17:77233837-77234337 1.5e-05 32_[-3]_46 chr19:36170520-36171020 1.5e-05 27_[+3]_51 chr11:112961080-11296158 1.6e-05 34_[+3]_44 chr12:8697295-8697795 1.6e-05 22_[-3]_56 chr14:23010160-23010660 1.6e-05 24_[+3]_54 chr10:3314384-3314884 1.8e-05 6_[-3]_72 chr1:20732249-20732749 1.8e-05 64_[+3]_14 chr3:181328959-181329459 1.8e-05 57_[+3]_21 chr8:11201402-11201902 2e-05 52_[+3]_26 chr1:154558607-154559107 2e-05 30_[+3]_48 chr1:156114073-156114573 2e-05 36_[+3]_42 chr14:23567416-23567916 2e-05 49_[+3]_29 chr19:18291916-18292416 2.2e-05 53_[-3]_25 chr19:41859740-41860240 2.4e-05 71_[+3]_7 chr21:25607299-25607799 2.4e-05 4_[+3]_74 chr19:35154632-35155132 2.7e-05 49_[+3]_29 chr19:39406212-39406712 2.7e-05 38_[+3]_40 chr12:56724907-56725407 2.7e-05 65_[+3]_13 chr19:40191762-40192262 3e-05 71_[-3]_7 chr12:6689167-6689667 3.3e-05 43_[+3]_35 chr7:100429303-100429803 3.3e-05 29_[-3]_49 chr7:100081494-100081994 3.3e-05 18_[-3]_60 chr1:26620545-26621045 3.6e-05 78_[+3] chr12:68808031-68808531 3.6e-05 11_[-3]_67 chr6:85643017-85643517 3.6e-05 74_[+3]_4 chr12:57726093-57726593 3.6e-05 19_[-3]_59 chr19:18058445-18058945 3.9e-05 62_[-3]_16 chr17:39401732-39402232 3.9e-05 75_[+3]_3 chr12:1661943-1662443 4.3e-05 59_[+3]_19 chr12:57752249-57752749 4.3e-05 7_[-3]_71 chr13:111153234-11115373 4.7e-05 3_[-3]_75 chr10:101782951-10178345 4.7e-05 57_[+3]_21 chr19:37218011-37218511 5.1e-05 5_[-3]_73 chr3:15860034-15860534 5.1e-05 63_[-3]_15 chr17:81398838-81399338 5.1e-05 5_[-3]_73 chr16:30698655-30699155 5.6e-05 38_[+3]_40 chr17:75456468-75456968 5.6e-05 39_[-3]_39 chr19:41310205-41310705 5.6e-05 68_[+3]_10 chr19:48363328-48363828 5.6e-05 57_[+3]_21 chr17:38558983-38559483 5.6e-05 32_[-3]_46 chr1:11980216-11980716 5.6e-05 59_[-3]_19 chr16:30787047-30787547 6.1e-05 48_[-3]_30 chr1:229342566-229343066 6.6e-05 38_[-3]_40 chr5:176388737-176389237 6.6e-05 73_[-3]_5 chr5:36241792-36242292 6.6e-05 30_[-3]_48 chr17:64506506-64507006 6.6e-05 21_[-3]_57 chr1:224113876-224114376 7.2e-05 69_[-3]_9 chr5:173057053-173057553 7.2e-05 77_[-3]_1 chr22:46762688-46763188 7.2e-05 38_[-3]_40 chr19:17075852-17076352 7.2e-05 27_[-3]_51 chr12:30695471-30695971 7.8e-05 39_[+3]_39 chr15:72230359-72230859 7.8e-05 37_[-3]_41 chr19:49850656-49851156 8.5e-05 70_[+3]_8 chr17:29390099-29390599 9.2e-05 38_[-3]_40 chr12:48999327-48999827 9.2e-05 [+3]_78 chr19:17309587-17310087 9.2e-05 2_[+3]_76 chr17:81253428-81253928 0.0001 30_[+3]_48 chr17:42388538-42389038 0.0001 47_[-3]_31 chr22:29388135-29388635 0.0001 38_[+3]_40 chrX:47561184-47561684 0.00011 34_[-3]_44 chr19:3035763-3036263 0.00011 49_[+3]_29 chr10:100286279-10028677 0.00011 11_[+3]_67 chr15:84715938-84716438 0.00012 37_[+3]_41 chr17:7844009-7844509 0.00012 50_[-3]_28 chr4:77075913-77076413 0.00013 74_[-3]_4 chr22:41091632-41092132 0.00014 49_[-3]_29 chr19:39033050-39033550 0.00015 60_[-3]_18 chr5:139765278-139765778 0.00018 19_[+3]_59 chr20:44475793-44476293 0.0002 54_[-3]_24 chr10:93209002-93209502 0.00026 51_[+3]_27 chr9:18976696-18977196 0.00028 74_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCTCCCYCYYCYYCYMYYYCY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYCTCCCYCYYCYYCYMYYYCY width=22 seqs=144 chr12:389112-389612 ( 74) CTTTCCTTCTTCTTCTCTTCCC 1 chr5:77644615-77645115 ( 34) CTTTCTCTTTTTCTCCCTTTCC 1 chr1:155244585-155245085 ( 66) CTCTCTCTCTCTCTCTCTCTCT 1 chr1:234723898-234724398 ( 28) CCCTCCCTCTCCCTCCATTTCT 1 chr7:100478079-100478579 ( 45) CTCTCTCTCTCTCTCTCTCTCT 1 chr10:69629821-69630321 ( 2) CCCTCCTCCTTCTTCTCCTTCT 1 chr19:17337038-17337538 ( 57) CTCTGTCCTTTCTTCCATTCCT 1 chr6:41779980-41780480 ( 19) CTCTCCCCTTCCCTTCGTTTCT 1 chr17:49495900-49496400 ( 40) CTTTCCTTCTGCTTCCATCTCT 1 chr22:30246134-30246634 ( 71) TTCCCCCTCTCCTTCTCCTCCT 1 chr22:20496077-20496577 ( 18) CTCTCTCATTCCTTCCCTTCCT 1 chr19:3056270-3056770 ( 36) CTCTCCCTCCTCTTTCCCTCCC 1 chr2:216372168-216372668 ( 55) CTTTTCCTCTCATCCCCTTTCC 1 chr2:219543645-219544145 ( 7) CTCCCCCTTCTCCTCCCTCTCC 1 chr1:236395242-236395742 ( 12) CCTCCCTTCTTCTTCTCCTCCT 1 chr1:66924916-66925416 ( 57) CCCTTTCTCTCCTTCCCCTCCC 1 chr5:37371061-37371561 ( 38) TCCCCTTTATCCTTCCCTTCCT 1 chr12:54359150-54359650 ( 8) CTCTCTCTCTTTCGCTGTCTCT 1 chr19:42279585-42280085 ( 28) TTCCTCCTCTCCTCCTCTTCCC 1 chr19:42220136-42220636 ( 35) CTCACCCGTTTCTCTTATCTCC 1 chr10:102504285-10250478 ( 62) CTCACTCTATTCTCCTAATCCC 1 chr14:103520913-10352141 ( 28) CCCTCCCTCCTCCTCCTCCTCC 1 chr17:47649690-47650190 ( 67) CCTTCTTTCTCCCTCCGCCTCC 1 chr6:111483779-111484279 ( 74) TTCTCCCGCCCCCTTCCTTCCC 1 chr1:227318141-227318641 ( 43) CCCTCCCCCGCCTTCCCTCTCC 1 chr14:22982571-22983071 ( 43) CACTCTTTCCTATTCCAATTCT 1 chr1:183471824-183472324 ( 44) TCTTCCCCCTTCTTATCACTCC 1 chr10:101694527-10169502 ( 11) CATTCCTCCTTCTTCCCATACT 1 chr19:35031013-35031513 ( 7) CTCTCCCTGTCCCTCCGTCTTT 1 chr1:234608188-234608688 ( 7) CTCTCCGTCCCCTTTTCTCCCC 1 chr12:132597484-13259798 ( 37) CTGTCTCTGTCTCTCCATCTCT 1 chr20:48921228-48921728 ( 49) CTCTCCTCTCATCTCCATCACC 1 chr1:226062668-226063168 ( 71) CTCGCTCCTCACCTCCATTTCT 1 chr19:35748510-35749010 ( 32) CTCACCTGATTTCTCCACTTTC 1 chr1:30824110-30824610 ( 75) TCTGTCCTTCTCCTCTCTCTCT 1 chr19:13151269-13151769 ( 34) TTCATCCCATCTCTCCTCTTCC 1 chr17:68511929-68512429 ( 2) CCCTCCTTACCTGTCCCTCTCT 1 chr19:39414239-39414739 ( 10) TTCCCCCTAATCTTCCACTTCC 1 chr19:11482291-11482791 ( 59) CCTTGCCGATTCTTCTGTCCCC 1 chr17:82586098-82586598 ( 11) TCTCCCCTCTCCTCCTTTCCCC 1 chr10:25934670-25935170 ( 32) TCCTCCCCTTACGTTTCCTTCC 1 chr19:58572946-58573446 ( 50) TACACCCTCTCCTCCCTTCCCC 1 chr7:139231141-139231641 ( 37) CTCTGTCGCTTTTCTTCCCTCC 1 chr20:37095872-37096372 ( 51) TACATCTTCTTATCACATTTCC 1 chr16:3264026-3264526 ( 26) TTTATTCTCTACCGCTACTTCC 1 chr13:113296742-11329724 ( 17) CTACTCTTCCTCTTCCTTTTCC 1 chr15:70097468-70097968 ( 35) CTCTACGGCTTCCTTCCTTCCC 1 chr15:99565573-99566073 ( 50) TTCTCCCCATCAGTTTCTTTTC 1 chr10:93702410-93702910 ( 65) TTCTCCCGCTGCCCTTGTTTCC 1 chr19:2475388-2475888 ( 5) TTCTCCCGGCCTCTCTGTTCCC 1 chr17:59619511-59620011 ( 11) TCCCTCCGGTTCCTCTGTTTCC 1 chr15:72117548-72118048 ( 14) CTCGGCCTCTTCTGCCATCTCC 1 chr1:53220235-53220735 ( 41) CCCACTCGCTTCATCTCCTCCT 1 chr5:93582512-93583012 ( 18) CTCCCCCTCGTCATCCCTTCCC 1 chr5:150449640-150450140 ( 50) TCTACCTCTTTTCGCTCTCCCT 1 chr6:113971028-113971528 ( 77) TCTTCTTCCTCATTTTAACACT 1 chr1:31937347-31937847 ( 44) TTTACTCACTCATTCTACCACC 1 chr19:49677012-49677512 ( 11) CCCCCCCTTTCTCCTCACTCCC 1 chr6:109382349-109382849 ( 32) TCCTCCCGACTCCCCTGCTTCC 1 chr19:38336509-38337009 ( 79) CCTTGCTCCTTATTCCGCCCCC 1 chr16:30065205-30065705 ( 16) TCCATCCGCGTCCTCCACTTCC 1 chr10:79067375-79067875 ( 78) CACGCCCTCCTCTCCCACTTCC 1 chr10:101442022-10144252 ( 36) TAGAATCTCTCTCTCTCTCTCT 1 chr19:44113293-44113793 ( 34) CTTTTCCCCTAATTCGATCACC 1 chr19:10653973-10654473 ( 25) TTATCTCTTTTCGCCCCTCCCT 1 chr19:38736500-38737000 ( 29) CCCTCCCCAACTCTTCCTTCCC 1 chr6:26571601-26572101 ( 10) TTTGGCCTTTACTCCTATCTTT 1 chr16:30400043-30400543 ( 31) CACGCCCCCTCTTCCTCCTCCT 1 chr1:996194-996694 ( 52) TCCTTTCTGTCCTCCCCACCCT 1 chr1:125179946-125180446 ( 31) TCCATTCGATAATTCCGTTTTT 1 chr19:45092776-45093276 ( 25) CCTGCCCTTTGTTTCTCTCTTC 1 chr8:144020132-144020632 ( 56) CTTCCCTGATAACCCTCTCCCC 1 chr16:67246003-67246503 ( 66) CCGACTCTCTCTCCTCTTCTCC 1 chr17:77233837-77234337 ( 33) CTGACCTCATCCCTCTATTTGT 1 chr19:36170520-36171020 ( 28) CTTATTTATTATCTCAGTTTCT 1 chr11:112961080-11296158 ( 35) CTCACCCCCGCCCCCCGCTCCT 1 chr12:8697295-8697795 ( 23) CCCTCCCCGCCCTCACATTCCC 1 chr14:23010160-23010660 ( 25) CCCTTTCCCATCTTTTTTTCTC 1 chr10:3314384-3314884 ( 7) CACTGTCCCCTTCCCTCACTCT 1 chr1:20732249-20732749 ( 65) CTGTCATCCCTCTCCTCTTACT 1 chr3:181328959-181329459 ( 58) CTTTATTGCCTCTTTGATTCCC 1 chr8:11201402-11201902 ( 53) CTTCCCCTCTTCCGTTGACCCC 1 chr1:154558607-154559107 ( 31) CTCTCCGTCTTTCCCGCCCCCC 1 chr1:156114073-156114573 ( 37) CTCAGCCCTCCCCCCACTTTCC 1 chr14:23567416-23567916 ( 50) TCCTCCCCCGATTTCCATCTCA 1 chr19:18291916-18292416 ( 54) TCCTTTCTCCCCCCCTCCCATT 1 chr19:41859740-41860240 ( 72) TCTATCCTCTCTCTATTACACT 1 chr21:25607299-25607799 ( 5) TCCTTCTCCGCCCTCCTCCCCC 1 chr19:35154632-35155132 ( 50) TTGACCCCTTCCGCTCCTCTCC 1 chr19:39406212-39406712 ( 39) CTCTGCGTCTCTCCCCGCCCCC 1 chr12:56724907-56725407 ( 66) CTCTCCTTAACTCTCAGTCCCC 1 chr19:40191762-40192262 ( 72) CACCGCCCCCTCCTCCTCCTCC 1 chr12:6689167-6689667 ( 44) CTCCACGCCCCCCTCCCTCCCC 1 chr7:100429303-100429803 ( 30) CCTACTGATCTCCTTTGTCTCT 1 chr7:100081494-100081994 ( 19) TTCCGTTCTTTGTTCTGTCCCC 1 chr1:26620545-26621045 ( 79) CTGAGCGCCCACTTCCATTCCT 1 chr12:68808031-68808531 ( 12) CTCGGCTTCTTGCTCCATCTTT 1 chr6:85643017-85643517 ( 75) CCGAGTCGGCTCCTCTCTTTCT 1 chr12:57726093-57726593 ( 20) CCCTCTCCATTGTTTCCACACT 1 chr19:18058445-18058945 ( 63) CCTCCCTCTTTCTGCCCACACT 1 chr17:39401732-39402232 ( 76) CCCCGTGTCCCCCTCTCCTCCC 1 chr12:1661943-1662443 ( 60) CCCCACCGCTGTCTTCCTCTCC 1 chr12:57752249-57752749 ( 8) CTTACACTCTTCGCCCTCCTCC 1 chr13:111153234-11115373 ( 4) TCCTGTCCAGTCTTCGGTCTCT 1 chr10:101782951-10178345 ( 58) CCCGCCTCACATCCCTACCTCT 1 chr19:37218011-37218511 ( 6) CTCACCGCGCACTTCCCCTACC 1 chr3:15860034-15860534 ( 64) CTCATCCCACTCCTTGGCTCCC 1 chr17:81398838-81399338 ( 6) TCCACACTAGCTCTCCCCCTCT 1 chr16:30698655-30699155 ( 39) CCCTCCCTTCTCTCAGCCTTTC 1 chr17:75456468-75456968 ( 40) CTCGCCCGCGTCCTCTCCCCTC 1 chr19:41310205-41310705 ( 69) TTTACCGGTCCTCTTCACTACT 1 chr19:48363328-48363828 ( 58) CTCCACCTCCACGTCCCACCCT 1 chr17:38558983-38559483 ( 33) TCCTGCCCTGCATCCCTTTCCC 1 chr1:11980216-11980716 ( 60) CTCGCCCTCTCACCTTCACCTT 1 chr16:30787047-30787547 ( 49) CCCTGCTCCCACCGCTGTCCCC 1 chr1:229342566-229343066 ( 39) CCCCTCCCTCGCTCCTCCTCCC 1 chr5:176388737-176389237 ( 74) CTTCCTTCCCTCCGACATCACT 1 chr5:36241792-36242292 ( 31) TTTCTTCCCCGCCCACCTTTCT 1 chr17:64506506-64507006 ( 22) CTATTTCGTTTTGTATCCCTCC 1 chr1:224113876-224114376 ( 70) CCTTCCTCTGCCATCCGCTCCT 1 chr5:173057053-173057553 ( 78) CCCTGTCTCCTCCCCTCTCAGT 1 chr22:46762688-46763188 ( 39) CCCTCTCCAGACCCCCGACTCC 1 chr19:17075852-17076352 ( 28) CACGCCCTCGAACTCCCTCACC 1 chr12:30695471-30695971 ( 40) TTGACCCTCTCAGCCTCCTCTT 1 chr15:72230359-72230859 ( 38) TTCCCCTCCCGCGTCCATTCTC 1 chr19:49850656-49851156 ( 71) TCGCCTTCGTTCTTCTGCCACC 1 chr17:29390099-29390599 ( 39) TTCCCCCCCTTTACCCGACACC 1 chr12:48999327-48999827 ( 1) CCTTCCCACTGCTGTTGTCCCC 1 chr19:17309587-17310087 ( 3) CTCACCTGTGACCTTCGACCCC 1 chr17:81253428-81253928 ( 31) CATCACCATCATCTCCATCCCT 1 chr17:42388538-42389038 ( 48) CATTCCGGTCATCTTCCCTCCC 1 chr22:29388135-29388635 ( 39) CCCCTCGCCCCACTTCTTCTCC 1 chrX:47561184-47561684 ( 35) TATTCCTGTTACCCACCCCACC 1 chr19:3035763-3036263 ( 50) TTGCATCTTTCTCCCTATTTCA 1 chr10:100286279-10028677 ( 12) CTCCTCTCACCAGCCCGTTCCT 1 chr15:84715938-84716438 ( 38) CAGTGCTTGCACTTCCGCTTCC 1 chr17:7844009-7844509 ( 51) CCCTTTTAGTCCCCCAACTTCC 1 chr4:77075913-77076413 ( 75) TCCTCCCTCCTTCCATCCTAGT 1 chr22:41091632-41092132 ( 50) CCGACTCCCCTCCGCACTCTCT 1 chr19:39033050-39033550 ( 61) CCCAGCTAATTTTTGTATTTTT 1 chr5:139765278-139765778 ( 20) TCGTTCTGCCCAGTATATTCCC 1 chr20:44475793-44476293 ( 55) CACTTCCGGTTATCCTTCCCTC 1 chr10:93209002-93209502 ( 52) TCTCACTGCTTATGATCTCACT 1 chr9:18976696-18977196 ( 75) TTATCATCATCATCTTATCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCTCCCYCYYCYYCYMYYYCY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.394 E= 1.2e-085 -1381 104 -1381 92 -76 32 -1381 148 -267 95 -174 50 33 -59 -196 144 -150 90 -115 9 -267 106 -1381 76 -1381 97 -196 69 -167 13 -84 122 -14 72 -196 33 -267 -2 -174 166 -21 21 -254 124 -34 87 -396 50 -267 59 -196 119 -1381 -5 -208 179 -108 113 -554 19 -234 65 -296 124 54 46 -68 -86 -67 1 -1381 167 -1381 69 -1381 144 -34 32 -1381 138 -1381 141 -396 -58 -366 83 -1381 122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCTCCCYCYYCYYCYMYYYCY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 144 E= 1.2e-085 0.000000 0.666667 0.000000 0.333333 0.104167 0.402778 0.000000 0.493056 0.027778 0.625000 0.097222 0.250000 0.222222 0.215278 0.083333 0.479167 0.062500 0.604167 0.145833 0.187500 0.027778 0.673611 0.000000 0.298611 0.000000 0.631944 0.083333 0.284722 0.055556 0.354167 0.180556 0.409722 0.159722 0.534722 0.083333 0.222222 0.027778 0.319444 0.097222 0.555556 0.152778 0.375000 0.055556 0.416667 0.138889 0.590278 0.020833 0.250000 0.027778 0.486111 0.083333 0.402778 0.000000 0.312500 0.076389 0.611111 0.083333 0.708333 0.006944 0.201389 0.034722 0.506944 0.041667 0.416667 0.256944 0.444444 0.201389 0.097222 0.111111 0.326389 0.000000 0.562500 0.000000 0.520833 0.000000 0.479167 0.138889 0.402778 0.000000 0.458333 0.000000 0.861111 0.020833 0.118056 0.013889 0.576389 0.000000 0.409722 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCTCCCYCYYCYYCYMYYYCY MEME-3 regular expression -------------------------------------------------------------------------------- [CT][TC][CT][TAC]C[CT][CT][TC][CT][TC][TC][CT][CT][TC][CT][CT][CAG][TC][CT][TC]C[CT] -------------------------------------------------------------------------------- Time 2396.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGGARWTGTAGTTC MEME-4 width = 16 sites = 9 llr = 156 E-value = 5.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGGARWTGTAGTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a461::a:::2 pos.-specific C 8:::::1:1:1::128 probability G 1:aa9:4::a::a:2: matrix T 1a::1::48:9::96: bits 2.5 * * * 2.3 * * * 2.0 * * ** * 1.8 * * ** * Relative 1.5 *** * ******* Entropy 1.3 ***** ******* (25.1 bits) 1.0 ***** ******* * 0.8 ****** ********* 0.5 **************** 0.3 **************** 0.0 ---------------- Multilevel CTGGGAAATGTAGTTC consensus GT CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGARWTGTAGTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr8:28890140-28890640 - 6 4.11e-10 CCGGGCGTCC CTGGGAGTTGTAGTTC CTGCC chr17:78254349-78254849 + 28 4.11e-10 CCGTGGCACG CTGGGAGTTGTAGTTC GCGCTCCCTC chr16:70439068-70439568 - 65 2.35e-09 GCGCTGTCTT CTGGGAGATGTAGTCC TGGATGCGGG chr1:185156973-185157473 - 20 3.07e-09 TGTATGCCTG CTGGGAAACGTAGTTC TGCGCCCGCA chr21:33491530-33492030 + 39 3.36e-09 GATTGGGATT GTGGGAGATGTAGTTC GCTAGAAGGG chr19:35717304-35717804 - 13 3.79e-09 CCCCGAGGCC CTGGGAAATGCAGTTC GCGGCTGCAG chr19:45886589-45887089 - 58 1.04e-08 GCAGTGCATT TTGGGAATTGTAGTGA AGCGGGTGGG chr1:42335157-42335657 + 10 3.95e-08 ATCCCTCCG CTGGGACAAGTAGTGC CCTGAGACTC chr19:35947345-35947845 - 2 7.50e-08 ATGGGAGCAA CTGGTAATTGTAGCCA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGARWTGTAGTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:28890140-28890640 4.1e-10 5_[-4]_79 chr17:78254349-78254849 4.1e-10 27_[+4]_57 chr16:70439068-70439568 2.3e-09 64_[-4]_20 chr1:185156973-185157473 3.1e-09 19_[-4]_65 chr21:33491530-33492030 3.4e-09 38_[+4]_46 chr19:35717304-35717804 3.8e-09 12_[-4]_72 chr19:45886589-45887089 1e-08 57_[-4]_27 chr1:42335157-42335657 3.9e-08 9_[+4]_75 chr19:35947345-35947845 7.5e-08 1_[-4]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGARWTGTAGTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGGARWTGTAGTTC width=16 seqs=9 chr8:28890140-28890640 ( 6) CTGGGAGTTGTAGTTC 1 chr17:78254349-78254849 ( 28) CTGGGAGTTGTAGTTC 1 chr16:70439068-70439568 ( 65) CTGGGAGATGTAGTCC 1 chr1:185156973-185157473 ( 20) CTGGGAAACGTAGTTC 1 chr21:33491530-33492030 ( 39) GTGGGAGATGTAGTTC 1 chr19:35717304-35717804 ( 13) CTGGGAAATGCAGTTC 1 chr19:45886589-45887089 ( 58) TTGGGAATTGTAGTGA 1 chr1:42335157-42335657 ( 10) CTGGGACAAGTAGTGC 1 chr19:35947345-35947845 ( 2) CTGGTAATTGTAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGARWTGTAGTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 13.3161 E= 5.9e-002 -982 126 -154 -67 -982 -982 -982 250 -982 -982 163 -982 -982 -982 163 -982 -982 -982 146 -67 250 -982 -982 -982 133 -154 46 -982 165 -982 -982 133 -67 -154 -982 214 -982 -982 163 -982 -982 -154 -982 233 250 -982 -982 -982 -982 -982 163 -982 -982 -154 -982 233 -982 -54 -54 165 33 126 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGARWTGTAGTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 9 E= 5.9e-002 0.000000 0.777778 0.111111 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 1.000000 0.000000 0.000000 0.000000 0.444444 0.111111 0.444444 0.000000 0.555556 0.000000 0.000000 0.444444 0.111111 0.111111 0.000000 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.222222 0.222222 0.555556 0.222222 0.777778 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGARWTGTAGTTC MEME-4 regular expression -------------------------------------------------------------------------------- CTGGGA[AG][AT]TGTAGT[TCG][CA] -------------------------------------------------------------------------------- Time 2983.28 secs. ******************************************************************************** ******************************************************************************** MOTIF TGWGKGKKGTGKGTGT MEME-5 width = 16 sites = 21 llr = 270 E-value = 2.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGWGKGKKGTGKGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::4:1::::23::::: pos.-specific C :::::2:1:::::1:1 probability G 1a:74735a:739:92 matrix T 8:535173:8:719:7 bits 2.5 2.3 2.0 * 1.8 * * Relative 1.5 * ** * Entropy 1.3 ** * ** ***** (18.5 bits) 1.0 **** * ******** 0.8 ***** * ******** 0.5 **************** 0.3 **************** 0.0 ---------------- Multilevel TGTGTGTGGTGTGTGT consensus ATG GT AAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGKGKKGTGKGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr22:49975477-49975977 + 85 2.33e-10 gtgtgtgctg tgtgtgtggtgtgtgt chr20:63532007-63532507 + 82 3.01e-09 tgtcatgtga tgtgtcttgtgtgtgt gtc chr22:45979272-45979772 - 54 5.80e-09 GAGTGTGTTG TGTGTGGTGTATGTGT GTTTTGTGTC chr21:45591146-45591646 - 6 1.56e-08 GTGTCTATGT GGAGTGTTGTGTGTGT CTATG chr19:41310205-41310705 - 51 9.31e-08 CCGGTAAAGC TGAGGGGGGTGGGTGT CCCCCTAAAA chr12:1605009-1605509 + 57 1.18e-07 tgtgagagac agagggtggtgtgtgt ttgtgcctgt chr8:630759-631259 - 79 1.67e-07 TGTCAA TGTGGGTGGTGGGTGG TCACGGGAGG chr1:228782557-228783057 + 20 2.06e-07 gtgcggcatg tgtgtgtggtgtgtag agtatgctgt chr19:7197754-7198254 + 75 2.28e-07 tgtgtgtcca tgatgggcgtgtgtgt gtgtctgcgt chr4:189234917-189235417 + 18 3.32e-07 TCTGTGGTGG TGTTTGGTGTAGTTGT AGTAGTGCTC chr1:167936290-167936790 - 35 4.02e-07 CCCTGGGGAC TGAGGCTGGTGTGTGC TGCGGCTGCC chr15:65868948-65869448 - 46 4.02e-07 CGGGACCGCC TGTGAGTGGTGGGTTT GTGGATGGGG chr10:101830536-10183103 - 63 6.47e-07 TACCCCTGCA TGTGTGTGGAGGGCGT GCCCCAGGCC chr6:158852897-158853397 - 1 8.50e-07 GTATATGGTG TGGTGTTTGTATGTGT chr19:49118715-49119215 - 40 1.18e-06 AAAGACGCGC TGTGTTTGGAAGGTGG AGTGAGCGCC chr19:38402988-38403488 + 47 1.38e-06 GGGTGTGCGG TGAGGCTGGTGGGTGC AGGAAGGCCA chr19:36916415-36916915 + 76 1.91e-06 TCTGATGGGG TGATTGTGATATTTGG TTGCGCGGG chr19:36170520-36171020 + 51 2.24e-06 tcagtttctg cgagtgtagaatgtgt ggatggttca chr2:172098601-172099101 + 27 6.89e-06 GTGTGTATCA GTATGGGTGAGTGTGT GCTAGTATAG chr1:109100038-109100538 + 80 8.84e-06 GCTTGGAGCG TGTTAGGCGAGTGCGT GCGCC chr1:10793923-10794423 + 6 1.06e-05 AGGAC GGCGACgtgtgtgtgt gcgcgtgtgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGKGKKGTGKGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:49975477-49975977 2.3e-10 84_[+5] chr20:63532007-63532507 3e-09 81_[+5]_3 chr22:45979272-45979772 5.8e-09 53_[-5]_31 chr21:45591146-45591646 1.6e-08 5_[-5]_79 chr19:41310205-41310705 9.3e-08 50_[-5]_34 chr12:1605009-1605509 1.2e-07 56_[+5]_28 chr8:630759-631259 1.7e-07 78_[-5]_6 chr1:228782557-228783057 2.1e-07 19_[+5]_65 chr19:7197754-7198254 2.3e-07 74_[+5]_10 chr4:189234917-189235417 3.3e-07 17_[+5]_67 chr1:167936290-167936790 4e-07 34_[-5]_50 chr15:65868948-65869448 4e-07 45_[-5]_39 chr10:101830536-10183103 6.5e-07 62_[-5]_22 chr6:158852897-158853397 8.5e-07 [-5]_84 chr19:49118715-49119215 1.2e-06 39_[-5]_45 chr19:38402988-38403488 1.4e-06 46_[+5]_38 chr19:36916415-36916915 1.9e-06 75_[+5]_9 chr19:36170520-36171020 2.2e-06 50_[+5]_34 chr2:172098601-172099101 6.9e-06 26_[+5]_58 chr1:109100038-109100538 8.8e-06 79_[+5]_5 chr1:10793923-10794423 1.1e-05 5_[+5]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGKGKKGTGKGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGWGKGKKGTGKGTGT width=16 seqs=21 chr22:49975477-49975977 ( 85) TGTGTGTGGTGTGTGT 1 chr20:63532007-63532507 ( 82) TGTGTCTTGTGTGTGT 1 chr22:45979272-45979772 ( 54) TGTGTGGTGTATGTGT 1 chr21:45591146-45591646 ( 6) GGAGTGTTGTGTGTGT 1 chr19:41310205-41310705 ( 51) TGAGGGGGGTGGGTGT 1 chr12:1605009-1605509 ( 57) AGAGGGTGGTGTGTGT 1 chr8:630759-631259 ( 79) TGTGGGTGGTGGGTGG 1 chr1:228782557-228783057 ( 20) TGTGTGTGGTGTGTAG 1 chr19:7197754-7198254 ( 75) TGATGGGCGTGTGTGT 1 chr4:189234917-189235417 ( 18) TGTTTGGTGTAGTTGT 1 chr1:167936290-167936790 ( 35) TGAGGCTGGTGTGTGC 1 chr15:65868948-65869448 ( 46) TGTGAGTGGTGGGTTT 1 chr10:101830536-10183103 ( 63) TGTGTGTGGAGGGCGT 1 chr6:158852897-158853397 ( 1) TGGTGTTTGTATGTGT 1 chr19:49118715-49119215 ( 40) TGTGTTTGGAAGGTGG 1 chr19:38402988-38403488 ( 47) TGAGGCTGGTGGGTGC 1 chr19:36916415-36916915 ( 76) TGATTGTGATATTTGG 1 chr19:36170520-36171020 ( 51) CGAGTGTAGAATGTGT 1 chr2:172098601-172099101 ( 27) GTATGGGTGAGTGTGT 1 chr1:109100038-109100538 ( 80) TGTTAGGCGAGTGCGT 1 chr1:10793923-10794423 ( 6) GGCGACGTGTGTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGKGKKGTGKGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.5503 E= 2.1e+000 -189 -276 -118 211 -1104 -1104 156 -189 128 -276 -276 143 -1104 -1104 114 70 -30 -1104 23 143 -1104 -76 114 -89 -1104 -1104 4 192 -189 -176 69 92 -189 -1104 156 -1104 43 -1104 -1104 211 70 -1104 114 -1104 -1104 -1104 4 192 -1104 -1104 148 -89 -1104 -176 -1104 236 -189 -1104 148 -189 -1104 -176 -76 202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGKGKKGTGKGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 21 E= 2.1e+000 0.047619 0.047619 0.142857 0.761905 0.000000 0.000000 0.952381 0.047619 0.428571 0.047619 0.047619 0.476190 0.000000 0.000000 0.714286 0.285714 0.142857 0.000000 0.380952 0.476190 0.000000 0.190476 0.714286 0.095238 0.000000 0.000000 0.333333 0.666667 0.047619 0.095238 0.523810 0.333333 0.047619 0.000000 0.952381 0.000000 0.238095 0.000000 0.000000 0.761905 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.904762 0.095238 0.000000 0.095238 0.000000 0.904762 0.047619 0.000000 0.904762 0.047619 0.000000 0.095238 0.190476 0.714286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGKGKKGTGKGTGT MEME-5 regular expression -------------------------------------------------------------------------------- TG[TA][GT][TG]G[TG][GT]G[TA][GA][TG]GTGT -------------------------------------------------------------------------------- Time 3586.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCCCTCCCC MEME-6 width = 12 sites = 63 llr = 606 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCCCTCCCC MEME-6 Description -------------------------------------------------------------------------------- Simplified A 13:::3:3:::1 pos.-specific C 7:a7a7a:7a87 probability G :7::::::2::: matrix T 2::3:::72:22 bits 2.5 2.3 2.0 1.8 Relative 1.5 * * * * Entropy 1.3 * * ** * (13.9 bits) 1.0 ******* ** 0.8 ******** *** 0.5 ************ 0.3 ************ 0.0 ------------ Multilevel CGCCCCCTCCCC consensus A T A A TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCTCCCC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:4703926-4704426 - 50 7.27e-07 CCCCTCCCCA CGCCCCCTCCCC AGTAGGCGGC chr6:37819209-37819709 - 32 7.27e-07 ATGGCCGCTC CGCCCCCTCCCC GGCGTGCGCC chr12:54359150-54359650 - 66 7.27e-07 GCGCTCCCCC CGCCCCCTCCCC AGTCGCCCGC chr10:102743920-10274442 - 29 7.27e-07 ATGGCCCAGA CGCCCCCTCCCC CTTACCTGCG chr5:134371102-134371602 + 71 2.70e-06 TCCCGCGTCC CGCCCCCTCCTC CCCCAGCACT chr16:30526884-30527384 + 56 2.70e-06 GGCGGTGTCT CGCTCCCTCCCC TCCCGGGCCT chr9:130712978-130713478 - 60 2.70e-06 CTGCCCGAGA CACCCCCTCCCC CGGCCCCGGA chr17:79810338-79810838 + 54 2.70e-06 ccaccccacg caccccctcccC AAACCCGGCG chr12:48999327-48999827 + 86 3.49e-06 AAGCTGACAG TGCCCCCTCCCC CGC chr19:34404377-34404877 - 13 5.08e-06 CCCAGGACCT CGCCCACTCCCT CCGCACCCTT chr13:50081484-50081984 + 53 5.08e-06 GTAGACCCCG CGCCCACTCCCT GCACCCACCA chr1:232950496-232950996 - 86 5.08e-06 GCG CGCCCCCACCCC CTCGACCTCT chr19:40420972-40421472 + 83 6.36e-06 TTCACGGTGA CACTCCCTCCCC TCCGTG chr17:47649690-47650190 + 25 6.36e-06 ctccctccct cgctccctccct gcgcgccgcc chr19:40603582-40604082 - 6 6.36e-06 CCTGCGAGGG CACCCCCTCCCT CTCTC chr19:35869312-35869812 - 49 6.97e-06 CCCCAGCACC AGCCCCCTCCCC CAAGCACCGC chr19:15449226-15449726 - 24 6.97e-06 TCCGGGTAGG AGCCCCCTCCCC ACGCTGCCAA chr19:35031013-35031513 - 40 8.05e-06 CTCTGTCTCT CGCCCCCTTCCT CCCGTCTTCA chr1:26695413-26695913 - 19 8.05e-06 GGAACGGACT CGCTCCCTTCCC TTCACAAAGG chr1:54406491-54406991 - 76 9.69e-06 TGGGGGTCTG CGCCCCCTCCCA TCGGACGCTG chr2:219543645-219544145 + 54 9.69e-06 CCCCCGGAAG TGCCCCCTCCTC AGTGCGGGAG chr13:52011675-52012175 + 62 9.69e-06 CGCTCTGCGC TGCCCCCTCCTC GGACTCTGCG chr19:43640007-43640507 - 19 1.27e-05 ACGACGCCCG CGCCCCCACCCT CGCACAGCCT chr10:1056402-1056902 - 27 1.27e-05 GCTGGGCCAA CGCCCCCACCCT TGGTCACGTA chr19:36215066-36215566 - 14 1.27e-05 GAAGCTCTTA CACCCACTCCCT GCCCTCGCGC chr10:3314384-3314884 - 68 1.36e-05 GTGAAGTCAC TGCCCCCTTCCC TCACTCTGTG chr2:47176354-47176854 + 56 1.53e-05 AGTCCCGGCC AACCCCCTCCCC TCAAACTCTT chr19:11482291-11482791 - 13 1.53e-05 CGCCCCCGCG AGCTCCCTCCCC CCGCGAGGCA chr5:93582512-93583012 - 45 1.99e-05 CACACACTTA CGCTCACACCCC AGAGGGGGAA chr10:102152089-10215258 + 51 1.99e-05 AACACAGGCC CGCCCACTGCCC CTGTTGGGTT chr19:1512559-1513059 + 52 1.99e-05 AGGACCACCC TACCCCCTCCTC AATGGGCCCT chr17:82022358-82022858 + 68 1.99e-05 GGCTGCTCCA CGCCCCCTCCTA CCAGCTGCGA chr6:43771466-43771966 - 44 2.31e-05 AAGGTCCGAG CACCCCCTGCCC ACTGGTCTCT chr15:74695632-74696132 + 39 2.31e-05 AGCCTCCCTT CGCTCCCACCTC CGCGCCGACG chr19:10602436-10602936 + 77 2.31e-05 GCGGATCCCA CGCCCCCTGCTC TAACCGGGTC chr15:66701459-66701959 + 81 2.31e-05 ACATATCCGC CGCCCCCTGCTC CTCAGAGG chr5:611720-612220 - 40 2.31e-05 ATCCACACTC CGCTCCCACCCT GAACCCAGCG chr17:79839554-79840054 + 25 2.50e-05 GGCGACCCCT CGCCCACATCCC GGTGCCCGGG chr1:153677715-153678215 + 9 2.50e-05 TGCTCCAA AACCCACTCCCC AATTTACGCC chr19:29605843-29606343 + 86 2.50e-05 CCAGGAAGCG AGCCCACTCCTC CCC chr11:112961080-11296158 + 57 2.73e-05 CCCCGCTCCT CGCTCCCATCCC AGTTCCATCA chr17:75456468-75456968 - 26 2.73e-05 CTCCCCTCCC AACCCCCTCCTC ACTTCACGTC chr13:113296742-11329724 + 47 3.01e-05 ccGCGAACCC AGCCCACTTCCC GTTTCAGGAC chr1:227318141-227318641 + 20 3.01e-05 GGCTCCCAAc cactcccttcct ctcccttcca chr1:150235782-150236282 + 5 3.01e-05 CAGC TGCCCCCACCTC CTTGTCcaca chr14:105300915-10530141 - 58 3.34e-05 GCCAAGGGCC CGCCCACTGCCT TAGGTCGCGT chr19:49443696-49444196 + 89 3.62e-05 TACCTGAAGT CACTCCCACCCT chr19:35154632-35155132 + 84 3.92e-05 CCCCCATCCA CGCCCACATCTC TCTGC chr10:101782951-10178345 + 25 4.15e-05 AGCAGCCCTC CGCCCACACCCA CGCCTTGAAA chr19:3056270-3056770 + 59 4.15e-05 GAGGGAGAGA CGCCCACACCCA GCATCCCAGC chr1:26169681-26170181 + 53 4.53e-05 CTCACACGTG TGCTCCCTGCCC TGCTCCTGGC chr19:13952305-13952805 - 42 4.87e-05 CCGCCGCCGC CGCTCCCAGCCC CGCTGTTCCG chr20:44966324-44966824 - 8 4.87e-05 CGCCCAGACC CGCTCACTGCTC CATCCTC chr16:3020677-3021177 + 24 4.87e-05 CCATGTGGGG TGCCCCCTTCCA TCCGGTGACT chr15:65868948-65869448 + 33 5.13e-05 CAGAGAACCC CGCCCCCATCCA CAAACCCACC chr6:24774906-24775406 - 27 5.13e-05 CGCCCCTGCG TACCCACTTCCT GCCGCCTCTT chr1:44775081-44775581 + 8 5.41e-05 gcagccg cacccacatctc atcctaaacg chr8:1823319-1823819 + 34 6.20e-05 GTCTGCCCGG CGCACCCTCCCC AAGGGGCGCA chr19:35899503-35900003 - 53 6.20e-05 CACCTCCTCC CGCCCCCGCCCC GCGCAATCCC chr16:66880079-66880579 - 89 6.20e-05 . TACCCCCTGCCT GGGTGCTGAA chr10:117542219-11754271 - 46 6.47e-05 CTTCGCCCCT CGCTCCCAGCTC ACTCGCTCCT chr17:28726427-28726927 + 2 7.30e-05 A CGCCCACGCCCC CTAAGTCCTG chr10:62817092-62817592 + 44 9.46e-05 TTCCGCTACA CACTCCCGCCCC CGCTGCCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCTCCCC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:4703926-4704426 7.3e-07 49_[-6]_39 chr6:37819209-37819709 7.3e-07 31_[-6]_57 chr12:54359150-54359650 7.3e-07 65_[-6]_23 chr10:102743920-10274442 7.3e-07 28_[-6]_60 chr5:134371102-134371602 2.7e-06 70_[+6]_18 chr16:30526884-30527384 2.7e-06 55_[+6]_33 chr9:130712978-130713478 2.7e-06 59_[-6]_29 chr17:79810338-79810838 2.7e-06 53_[+6]_35 chr12:48999327-48999827 3.5e-06 85_[+6]_3 chr19:34404377-34404877 5.1e-06 12_[-6]_76 chr13:50081484-50081984 5.1e-06 52_[+6]_36 chr1:232950496-232950996 5.1e-06 85_[-6]_3 chr19:40420972-40421472 6.4e-06 82_[+6]_6 chr17:47649690-47650190 6.4e-06 24_[+6]_64 chr19:40603582-40604082 6.4e-06 5_[-6]_83 chr19:35869312-35869812 7e-06 48_[-6]_40 chr19:15449226-15449726 7e-06 23_[-6]_65 chr19:35031013-35031513 8e-06 39_[-6]_49 chr1:26695413-26695913 8e-06 18_[-6]_70 chr1:54406491-54406991 9.7e-06 75_[-6]_13 chr2:219543645-219544145 9.7e-06 53_[+6]_35 chr13:52011675-52012175 9.7e-06 61_[+6]_27 chr19:43640007-43640507 1.3e-05 18_[-6]_70 chr10:1056402-1056902 1.3e-05 26_[-6]_62 chr19:36215066-36215566 1.3e-05 13_[-6]_75 chr10:3314384-3314884 1.4e-05 67_[-6]_21 chr2:47176354-47176854 1.5e-05 55_[+6]_33 chr19:11482291-11482791 1.5e-05 12_[-6]_76 chr5:93582512-93583012 2e-05 44_[-6]_44 chr10:102152089-10215258 2e-05 50_[+6]_38 chr19:1512559-1513059 2e-05 51_[+6]_37 chr17:82022358-82022858 2e-05 67_[+6]_21 chr6:43771466-43771966 2.3e-05 43_[-6]_45 chr15:74695632-74696132 2.3e-05 38_[+6]_50 chr19:10602436-10602936 2.3e-05 76_[+6]_12 chr15:66701459-66701959 2.3e-05 80_[+6]_8 chr5:611720-612220 2.3e-05 39_[-6]_49 chr17:79839554-79840054 2.5e-05 24_[+6]_64 chr1:153677715-153678215 2.5e-05 8_[+6]_80 chr19:29605843-29606343 2.5e-05 85_[+6]_3 chr11:112961080-11296158 2.7e-05 56_[+6]_32 chr17:75456468-75456968 2.7e-05 25_[-6]_63 chr13:113296742-11329724 3e-05 46_[+6]_42 chr1:227318141-227318641 3e-05 19_[+6]_69 chr1:150235782-150236282 3e-05 4_[+6]_84 chr14:105300915-10530141 3.3e-05 57_[-6]_31 chr19:49443696-49444196 3.6e-05 88_[+6] chr19:35154632-35155132 3.9e-05 83_[+6]_5 chr10:101782951-10178345 4.1e-05 24_[+6]_64 chr19:3056270-3056770 4.1e-05 58_[+6]_30 chr1:26169681-26170181 4.5e-05 52_[+6]_36 chr19:13952305-13952805 4.9e-05 41_[-6]_47 chr20:44966324-44966824 4.9e-05 7_[-6]_81 chr16:3020677-3021177 4.9e-05 23_[+6]_65 chr15:65868948-65869448 5.1e-05 32_[+6]_56 chr6:24774906-24775406 5.1e-05 26_[-6]_62 chr1:44775081-44775581 5.4e-05 7_[+6]_81 chr8:1823319-1823819 6.2e-05 33_[+6]_55 chr19:35899503-35900003 6.2e-05 52_[-6]_36 chr16:66880079-66880579 6.2e-05 88_[-6] chr10:117542219-11754271 6.5e-05 45_[-6]_43 chr17:28726427-28726927 7.3e-05 1_[+6]_87 chr10:62817092-62817592 9.5e-05 43_[+6]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCTCCCC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCCCTCCCC width=12 seqs=63 chr17:4703926-4704426 ( 50) CGCCCCCTCCCC 1 chr6:37819209-37819709 ( 32) CGCCCCCTCCCC 1 chr12:54359150-54359650 ( 66) CGCCCCCTCCCC 1 chr10:102743920-10274442 ( 29) CGCCCCCTCCCC 1 chr5:134371102-134371602 ( 71) CGCCCCCTCCTC 1 chr16:30526884-30527384 ( 56) CGCTCCCTCCCC 1 chr9:130712978-130713478 ( 60) CACCCCCTCCCC 1 chr17:79810338-79810838 ( 54) CACCCCCTCCCC 1 chr12:48999327-48999827 ( 86) TGCCCCCTCCCC 1 chr19:34404377-34404877 ( 13) CGCCCACTCCCT 1 chr13:50081484-50081984 ( 53) CGCCCACTCCCT 1 chr1:232950496-232950996 ( 86) CGCCCCCACCCC 1 chr19:40420972-40421472 ( 83) CACTCCCTCCCC 1 chr17:47649690-47650190 ( 25) CGCTCCCTCCCT 1 chr19:40603582-40604082 ( 6) CACCCCCTCCCT 1 chr19:35869312-35869812 ( 49) AGCCCCCTCCCC 1 chr19:15449226-15449726 ( 24) AGCCCCCTCCCC 1 chr19:35031013-35031513 ( 40) CGCCCCCTTCCT 1 chr1:26695413-26695913 ( 19) CGCTCCCTTCCC 1 chr1:54406491-54406991 ( 76) CGCCCCCTCCCA 1 chr2:219543645-219544145 ( 54) TGCCCCCTCCTC 1 chr13:52011675-52012175 ( 62) TGCCCCCTCCTC 1 chr19:43640007-43640507 ( 19) CGCCCCCACCCT 1 chr10:1056402-1056902 ( 27) CGCCCCCACCCT 1 chr19:36215066-36215566 ( 14) CACCCACTCCCT 1 chr10:3314384-3314884 ( 68) TGCCCCCTTCCC 1 chr2:47176354-47176854 ( 56) AACCCCCTCCCC 1 chr19:11482291-11482791 ( 13) AGCTCCCTCCCC 1 chr5:93582512-93583012 ( 45) CGCTCACACCCC 1 chr10:102152089-10215258 ( 51) CGCCCACTGCCC 1 chr19:1512559-1513059 ( 52) TACCCCCTCCTC 1 chr17:82022358-82022858 ( 68) CGCCCCCTCCTA 1 chr6:43771466-43771966 ( 44) CACCCCCTGCCC 1 chr15:74695632-74696132 ( 39) CGCTCCCACCTC 1 chr19:10602436-10602936 ( 77) CGCCCCCTGCTC 1 chr15:66701459-66701959 ( 81) CGCCCCCTGCTC 1 chr5:611720-612220 ( 40) CGCTCCCACCCT 1 chr17:79839554-79840054 ( 25) CGCCCACATCCC 1 chr1:153677715-153678215 ( 9) AACCCACTCCCC 1 chr19:29605843-29606343 ( 86) AGCCCACTCCTC 1 chr11:112961080-11296158 ( 57) CGCTCCCATCCC 1 chr17:75456468-75456968 ( 26) AACCCCCTCCTC 1 chr13:113296742-11329724 ( 47) AGCCCACTTCCC 1 chr1:227318141-227318641 ( 20) CACTCCCTTCCT 1 chr1:150235782-150236282 ( 5) TGCCCCCACCTC 1 chr14:105300915-10530141 ( 58) CGCCCACTGCCT 1 chr19:49443696-49444196 ( 89) CACTCCCACCCT 1 chr19:35154632-35155132 ( 84) CGCCCACATCTC 1 chr10:101782951-10178345 ( 25) CGCCCACACCCA 1 chr19:3056270-3056770 ( 59) CGCCCACACCCA 1 chr1:26169681-26170181 ( 53) TGCTCCCTGCCC 1 chr19:13952305-13952805 ( 42) CGCTCCCAGCCC 1 chr20:44966324-44966824 ( 8) CGCTCACTGCTC 1 chr16:3020677-3021177 ( 24) TGCCCCCTTCCA 1 chr15:65868948-65869448 ( 33) CGCCCCCATCCA 1 chr6:24774906-24775406 ( 27) TACCCACTTCCT 1 chr1:44775081-44775581 ( 8) CACCCACATCTC 1 chr8:1823319-1823819 ( 34) CGCACCCTCCCC 1 chr19:35899503-35900003 ( 53) CGCCCCCGCCCC 1 chr16:66880079-66880579 ( 89) TACCCCCTGCCT 1 chr10:117542219-11754271 ( 46) CGCTCCCAGCTC 1 chr17:28726427-28726927 ( 2) CGCCCACGCCCC 1 chr10:62817092-62817592 ( 44) CACTCCCGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCTCCCC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.0371 E= 1.2e-003 -47 114 -1262 -15 53 -1262 120 -1262 -1262 163 -1262 -1262 -347 117 -1262 53 -1262 163 -1262 -1262 61 117 -1262 -1262 -1262 163 -1262 -1262 61 -1262 -276 195 -1262 101 -103 11 -1262 163 -1262 -1262 -1262 123 -1262 43 -89 108 -1262 33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCTCCCC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 63 E= 1.2e-003 0.126984 0.714286 0.000000 0.158730 0.253968 0.000000 0.746032 0.000000 0.000000 1.000000 0.000000 0.000000 0.015873 0.730159 0.000000 0.253968 0.000000 1.000000 0.000000 0.000000 0.269841 0.730159 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.269841 0.000000 0.047619 0.682540 0.000000 0.650794 0.158730 0.190476 0.000000 1.000000 0.000000 0.000000 0.000000 0.761905 0.000000 0.238095 0.095238 0.682540 0.000000 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCTCCCC MEME-6 regular expression -------------------------------------------------------------------------------- C[GA]C[CT]C[CA]C[TA]CC[CT][CT] -------------------------------------------------------------------------------- Time 4183.56 secs. ******************************************************************************** ******************************************************************************** MOTIF ARMAMAAAA MEME-7 width = 9 sites = 25 llr = 269 E-value = 1.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARMAMAAAA MEME-7 Description -------------------------------------------------------------------------------- Simplified A a54a68a98 pos.-specific C ::4:3::1: probability G :5::1:::: matrix T ::2::2::2 bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * **** Relative 1.5 * * **** Entropy 1.3 * * **** (15.5 bits) 1.0 ** * **** 0.8 ********* 0.5 ********* 0.3 ********* 0.0 --------- Multilevel AAAAAAAAA consensus GC C T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARMAMAAAA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr2:86440840-86441340 - 21 1.62e-07 CACAGTATGC AAAAAAAAA GTCCCGCGAA chr1:205750271-205750771 + 25 4.60e-07 TAGAAAGACT AGAAAAAAA GATTTATGTA chr1:234723898-234724398 + 79 4.60e-07 ggagagagag agaAAAAAA CCACCCTGCT chr1:231528201-231528701 + 2 4.60e-07 C AGAAAAAAA TTACGTACGT chr19:40750107-40750607 + 61 9.21e-07 GAACCAGAGC AACAAAAAA CGTCTGTGGG chr10:21525630-21526130 + 36 1.22e-06 GGCGCGGTCG AAAACAAAA AGGTTCCTCC chr6:43321906-43322406 + 69 1.22e-06 gagatgaata aaaacaaaa ccacaacact chr1:154973871-154974371 + 2 2.39e-06 A AAAAATAAA AATCAAGTCG chr12:49060556-49061056 - 17 3.79e-06 GCTCCGCTCC AACACAAAA TAGGGCCGCC chr1:153677715-153678215 + 72 3.79e-06 AACAACCCTC AACACAAAA CAGTCATTTT chr12:48716975-48717475 + 92 3.79e-06 ctctactaaa aatacaaaa chr19:38851513-38852013 + 49 4.38e-06 agaccctatc agaaaaaaT GGGGTTTATG chr1:244969768-244970268 + 23 4.84e-06 TGCAGTTAAC AACAAAAAT CGAGCAACGC chr12:30695471-30695971 - 28 8.61e-06 GGGTCAAAAG AAAACTAAA GCTGCAGTCC chr17:77233837-77234337 + 12 1.03e-05 GGATGAGGTC AGCAAAAAT GAGTTCATTC chr8:78515924-78516424 + 52 1.03e-05 TAAAAGCATT AATAGAAAA TCAATCCACA chr1:16545750-16546250 + 86 1.03e-05 CCTGCAGGAT AACAGAAAA CAGTAT chr19:1021373-1021873 - 50 1.03e-05 TGTAGACTAC AGCAAAAAT ATGGAACGCT chr5:150449640-150450140 - 39 1.13e-05 CTCTCCCTTA AGTAATAAA CCGTCTTTCC chr16:25258052-25258552 - 73 1.24e-05 TACTTCCGCC AGAAAAACA CCACGCCGCG chr19:39406212-39406712 - 4 1.24e-05 ACAGGCAGAG AGAAAAACA TCG chr3:194134813-194135313 + 91 1.41e-05 CCGCGGCGGC AATAAAACA T chr19:45092776-45093276 - 91 1.74e-05 A AGCAGAAAA TCGATTTCAG chr4:189234917-189235417 - 68 2.24e-05 ACCACCACAG AGCACAAAT GCAACTACAC chrX:47218293-47218793 + 46 2.51e-05 ATCGGAACTG AGTACTAAA CAGCCTCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARMAMAAAA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:86440840-86441340 1.6e-07 20_[-7]_71 chr1:205750271-205750771 4.6e-07 24_[+7]_67 chr1:234723898-234724398 4.6e-07 78_[+7]_13 chr1:231528201-231528701 4.6e-07 1_[+7]_90 chr19:40750107-40750607 9.2e-07 60_[+7]_31 chr10:21525630-21526130 1.2e-06 35_[+7]_56 chr6:43321906-43322406 1.2e-06 68_[+7]_23 chr1:154973871-154974371 2.4e-06 1_[+7]_90 chr12:49060556-49061056 3.8e-06 16_[-7]_75 chr1:153677715-153678215 3.8e-06 71_[+7]_20 chr12:48716975-48717475 3.8e-06 91_[+7] chr19:38851513-38852013 4.4e-06 48_[+7]_43 chr1:244969768-244970268 4.8e-06 22_[+7]_69 chr12:30695471-30695971 8.6e-06 27_[-7]_64 chr17:77233837-77234337 1e-05 11_[+7]_80 chr8:78515924-78516424 1e-05 51_[+7]_40 chr1:16545750-16546250 1e-05 85_[+7]_6 chr19:1021373-1021873 1e-05 49_[-7]_42 chr5:150449640-150450140 1.1e-05 38_[-7]_53 chr16:25258052-25258552 1.2e-05 72_[-7]_19 chr19:39406212-39406712 1.2e-05 3_[-7]_88 chr3:194134813-194135313 1.4e-05 90_[+7]_1 chr19:45092776-45093276 1.7e-05 90_[-7]_1 chr4:189234917-189235417 2.2e-05 67_[-7]_24 chrX:47218293-47218793 2.5e-05 45_[+7]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARMAMAAAA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARMAMAAAA width=9 seqs=25 chr2:86440840-86441340 ( 21) AAAAAAAAA 1 chr1:205750271-205750771 ( 25) AGAAAAAAA 1 chr1:234723898-234724398 ( 79) AGAAAAAAA 1 chr1:231528201-231528701 ( 2) AGAAAAAAA 1 chr19:40750107-40750607 ( 61) AACAAAAAA 1 chr10:21525630-21526130 ( 36) AAAACAAAA 1 chr6:43321906-43322406 ( 69) AAAACAAAA 1 chr1:154973871-154974371 ( 2) AAAAATAAA 1 chr12:49060556-49061056 ( 17) AACACAAAA 1 chr1:153677715-153678215 ( 72) AACACAAAA 1 chr12:48716975-48717475 ( 92) AATACAAAA 1 chr19:38851513-38852013 ( 49) AGAAAAAAT 1 chr1:244969768-244970268 ( 23) AACAAAAAT 1 chr12:30695471-30695971 ( 28) AAAACTAAA 1 chr17:77233837-77234337 ( 12) AGCAAAAAT 1 chr8:78515924-78516424 ( 52) AATAGAAAA 1 chr1:16545750-16546250 ( 86) AACAGAAAA 1 chr19:1021373-1021873 ( 50) AGCAAAAAT 1 chr5:150449640-150450140 ( 39) AGTAATAAA 1 chr16:25258052-25258552 ( 73) AGAAAAACA 1 chr19:39406212-39406712 ( 4) AGAAAAACA 1 chr3:194134813-194135313 ( 91) AATAAAACA 1 chr19:45092776-45093276 ( 91) AGCAGAAAA 1 chr4:189234917-189235417 ( 68) AGCACAAAT 1 chrX:47218293-47218793 ( 46) AGTACTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARMAMAAAA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 12.7165 E= 1.0e+002 250 -1129 -1129 -1129 156 -1129 57 -1129 132 15 -1129 18 250 -1129 -1129 -1129 167 -2 -143 -1129 225 -1129 -1129 -14 250 -1129 -1129 -1129 232 -143 -1129 -1129 218 -1129 -1129 18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARMAMAAAA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 25 E= 1.0e+002 1.000000 0.000000 0.000000 0.000000 0.520000 0.000000 0.480000 0.000000 0.440000 0.360000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.560000 0.320000 0.120000 0.000000 0.840000 0.000000 0.000000 0.160000 1.000000 0.000000 0.000000 0.000000 0.880000 0.120000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARMAMAAAA MEME-7 regular expression -------------------------------------------------------------------------------- A[AG][ACT]A[AC]AAA[AT] -------------------------------------------------------------------------------- Time 4758.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 width = 43 sites = 4 llr = 164 E-value = 2.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 Description -------------------------------------------------------------------------------- Simplified A ::5:::a3::5:3:a5:3:5:3::5::58::3:::8::3:::: pos.-specific C :::8a:::8:::55::::a:8::5::53::38:85:::8:8:: probability G 3a5::5:53a5:3::358:53:a5:3:::88:::::a:::3:5 matrix T 8::3:5:3:::a:5:35::::8::585333::a353:a:a:a5 bits 2.5 * * * * * * * 2.3 * * * * * * * 2.0 * * * * * * * 1.8 * * * * * * * * * * Relative 1.5 ** * * * * * * ** ** * * *** * * Entropy 1.3 ** * * * * * * ** ** * * *** * * (59.0 bits) 1.0 ******* *** ** **** ** *** ** ********* ** 0.8 ******* **** ****************************** 0.5 ************ ****************************** 0.3 ******************************************* 0.0 ------------------------------------------- Multilevel TGACCGAGCGATCCAAGGCACTGCATCAAGGCTCCAGTCTCTG consensus G GT T AG G AT GTA GGA GTGTCTTCA TTT A G T sequence T G T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr16:22296929-22297429 + 18 8.16e-22 CTGggtagcg tggccgagcggtctaaggcgctggattaaggctccagtctctt cgggggcgtg chr6:28943446-28943946 - 8 8.16e-22 GGTGGTAGCG TGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTT CGGGGGC chr19:36070202-36070702 + 51 2.13e-18 AACTAAAGCA TGATCTATCGATACATTGCAGAGCTTCTTTCCTTTAGTATCTG AAGGTTT chr1:228486997-228487497 + 17 1.37e-17 ACCGCGGCCA GGACCTAAGGATGCAGTACACTGCTGCCAGGATCTTGTCTGTG GAGCGCAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:22296929-22297429 8.2e-22 17_[+8]_40 chr6:28943446-28943946 8.2e-22 7_[-8]_50 chr19:36070202-36070702 2.1e-18 50_[+8]_7 chr1:228486997-228487497 1.4e-17 16_[+8]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK width=43 seqs=4 chr16:22296929-22297429 ( 18) TGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTT 1 chr6:28943446-28943946 ( 8) TGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTT 1 chr19:36070202-36070702 ( 51) TGATCTATCGATACATTGCAGAGCTTCTTTCCTTTAGTATCTG 1 chr1:228486997-228487497 ( 17) GGACCTAAGGATGCAGTACACTGCTGCCAGGATCTTGTCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 13.8237 E= 2.6e+002 -865 -865 -37 209 -865 -865 162 -865 150 -865 63 -865 -865 121 -865 50 -865 162 -865 -865 -865 -865 63 150 250 -865 -865 -865 50 -865 63 50 -865 121 -37 -865 -865 -865 162 -865 150 -865 63 -865 -865 -865 -865 250 50 63 -37 -865 -865 63 -865 150 250 -865 -865 -865 150 -865 -37 50 -865 -865 63 150 50 -865 121 -865 -865 162 -865 -865 150 -865 63 -865 -865 121 -37 -865 50 -865 -865 209 -865 -865 162 -865 -865 63 63 -865 150 -865 -865 150 -865 -865 -37 209 -865 63 -865 150 150 -37 -865 50 209 -865 -865 50 -865 -865 121 50 -865 -37 121 -865 50 121 -865 -865 -865 -865 -865 250 -865 121 -865 50 -865 63 -865 150 209 -865 -865 50 -865 -865 162 -865 -865 -865 -865 250 50 121 -865 -865 -865 -865 -865 250 -865 121 -37 -865 -865 -865 -865 250 -865 -865 63 150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 4 E= 2.6e+002 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.500000 0.250000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.500000 0.250000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.250000 0.250000 0.000000 0.000000 0.500000 0.500000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.250000 0.750000 0.000000 0.500000 0.000000 0.500000 0.500000 0.250000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.750000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.500000 0.000000 0.500000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRCCKADCGRTVYADKGCRCTGSWTYHAGGCTCYAGTCTCTK MEME-8 regular expression -------------------------------------------------------------------------------- [TG]G[AG][CT]C[GT]A[GAT][CG]G[AG]T[CAG][CT]A[AGT][GT][GA]C[AG][CG][TA]G[CG][AT][TG][CT][ACT][AT][GT][GC][CA]T[CT][CT][AT]GT[CA]T[CG]T[GT] -------------------------------------------------------------------------------- Time 5313.97 secs. ******************************************************************************** ******************************************************************************** MOTIF ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 width = 31 sites = 4 llr = 129 E-value = 5.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 Description -------------------------------------------------------------------------------- Simplified A a553::a:5::a:333:5:38a:a:3::3a8 pos.-specific C ::::5::::5a::58:::a53:5:3:::::: probability G :5:::a:a:3::8:::a5:::::::5a38:: matrix T ::585:::53::33:8:::3::5:83:8::3 bits 2.5 * * * * * * 2.3 * * * * * * 2.0 * * * * * * 1.8 * * * * * * * ** Relative 1.5 * ** **** ** ** * ** ** ** ** Entropy 1.3 * ** **** ** ** * ** ** ** ** (46.7 bits) 1.0 ********* *** ***** ***** ***** 0.8 ********* *** ***** ***** ***** 0.5 ********* ********************* 0.3 ******************************* 0.0 ------------------------------- Multilevel AAATCGAGACCAGCCTGACCAACATGGTGAA consensus GTAT TG TAAA G AC T CA GA T sequence T T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr12:48716975-48717475 + 43 7.34e-17 cgaggtcagg agttcgagaccagcctggccaatatggtgaa acccccgtct chr19:39033050-39033550 + 16 2.38e-16 tgaggtcaga agttcgagaccagcctggccaacatggtgaa accccgtctc chr3:181328959-181329459 - 25 6.22e-15 CAATAAAGTG AAATTGAGTGCAGAAAGACTCACATTGTAAA TCCATTTACT chr17:77233837-77234337 + 57 1.31e-14 GAGGTCAGCA AAAATGAGTTCATTCTGACAAATACAgggat gaggtcagcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:48716975-48717475 7.3e-17 42_[+9]_27 chr19:39033050-39033550 2.4e-16 15_[+9]_54 chr3:181328959-181329459 6.2e-15 24_[-9]_45 chr17:77233837-77234337 1.3e-14 56_[+9]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA width=31 seqs=4 chr12:48716975-48717475 ( 43) AGTTCGAGACCAGCCTGGCCAATATGGTGAA 1 chr19:39033050-39033550 ( 16) AGTTCGAGACCAGCCTGGCCAACATGGTGAA 1 chr3:181328959-181329459 ( 25) AAATTGAGTGCAGAAAGACTCACATTGTAAA 1 chr17:77233837-77234337 ( 57) AAAATGAGTTCATTCTGACAAATACAGGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 14.095 E= 5.5e+002 250 -865 -865 -865 150 -865 63 -865 150 -865 -865 150 50 -865 -865 209 -865 63 -865 150 -865 -865 162 -865 250 -865 -865 -865 -865 -865 162 -865 150 -865 -865 150 -865 63 -37 50 -865 162 -865 -865 250 -865 -865 -865 -865 -865 121 50 50 63 -865 50 50 121 -865 -865 50 -865 -865 209 -865 -865 162 -865 150 -865 63 -865 -865 162 -865 -865 50 63 -865 50 209 -37 -865 -865 250 -865 -865 -865 -865 63 -865 150 250 -865 -865 -865 -865 -37 -865 209 50 -865 63 50 -865 -865 162 -865 -865 -865 -37 209 50 -865 121 -865 250 -865 -865 -865 209 -865 -865 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 4 E= 5.5e+002 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.250000 0.000000 0.000000 0.750000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.500000 0.250000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.250000 0.500000 0.000000 0.250000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.500000 0.000000 0.250000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.000000 0.500000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTYGAGWBCAGHCTGRCHAAYATDGTGAA MEME-9 regular expression -------------------------------------------------------------------------------- A[AG][AT][TA][CT]GAG[AT][CGT]CA[GT][CAT][CA][TA]G[AG]C[CAT][AC]A[CT]A[TC][GAT]G[TG][GA]A[AT] -------------------------------------------------------------------------------- Time 5870.35 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATGTCATGTGATGGGTGRT MEME-10 width = 21 sites = 2 llr = 60 E-value = 4.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATGTCATGTGATGGGTGRT MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::a::::a::::a::::::5: pos.-specific C ::::::a:::::::::::::: probability G :a::a::::a:a::aaa:a5: matrix T a::a:a::a:a::a:::a::a bits 2.5 * ** * ** * ** * * 2.3 * ** * ** * ** * * 2.0 * ** * ** * ** * * 1.8 * ** * ** * ** * * Relative 1.5 ******************* * Entropy 1.3 ******************* * (43.3 bits) 1.0 ********************* 0.8 ********************* 0.5 ********************* 0.3 ********************* 0.0 --------------------- Multilevel TGATGTCATGTGATGGGTGAT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGTCATGTGATGGGTGRT MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr17:74514503-74515003 + 8 3.48e-14 tgatggg tgatgtcatgtgatgggtgat gtgatgggca chr17:74514061-74514561 + 3 9.87e-14 gg tgatgtcatgtgatgggtggt catgtgatgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGTCATGTGATGGGTGRT MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:74514503-74515003 3.5e-14 7_[+10]_72 chr17:74514061-74514561 9.9e-14 2_[+10]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGTCATGTGATGGGTGRT MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATGTCATGTGATGGGTGRT width=21 seqs=2 chr17:74514503-74515003 ( 8) TGATGTCATGTGATGGGTGAT 1 chr17:74514061-74514561 ( 3) TGATGTCATGTGATGGGTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGTCATGTGATGGGTGRT MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 14.5507 E= 4.2e+005 -765 -765 -765 250 -765 -765 162 -765 250 -765 -765 -765 -765 -765 -765 250 -765 -765 162 -765 -765 -765 -765 250 -765 162 -765 -765 250 -765 -765 -765 -765 -765 -765 250 -765 -765 162 -765 -765 -765 -765 250 -765 -765 162 -765 250 -765 -765 -765 -765 -765 -765 250 -765 -765 162 -765 -765 -765 162 -765 -765 -765 162 -765 -765 -765 -765 250 -765 -765 162 -765 150 -765 62 -765 -765 -765 -765 250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGTCATGTGATGGGTGRT MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 2 E= 4.2e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGTCATGTGATGGGTGRT MEME-10 regular expression -------------------------------------------------------------------------------- TGATGTCATGTGATGGGTG[AG]T -------------------------------------------------------------------------------- Time 6438.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40603582-40604082 1.89e-01 5_[-6(6.36e-06)]_83 chr1:211258802-211259302 9.20e-01 100 chrX:47218293-47218793 2.17e-01 45_[+7(2.51e-05)]_46 chr19:10416652-10417152 6.03e-01 100 chr10:101067600-10106810 1.03e-01 74_[-5(1.42e-05)]_10 chr6:79078039-79078539 8.34e-01 100 chr17:82022358-82022858 1.53e-02 67_[+6(1.99e-05)]_21 chr1:1001825-1002325 2.29e-01 100 chr3:184248722-184249222 6.05e-01 100 chr10:102743920-10274442 1.41e-02 28_[-6(7.27e-07)]_60 chr17:81398838-81399338 1.23e-13 5_[-3(5.12e-05)]_50_[+1(8.00e-11)]_\ 1 chr13:52011675-52012175 1.63e-01 61_[+6(9.69e-06)]_27 chr16:30814073-30814573 4.52e-01 1_[+9(9.21e-05)]_68 chr9:136671602-136672102 6.39e-01 100 chr16:229134-229634 6.70e-01 100 chr5:139403787-139404287 1.28e-03 25_[-2(2.86e-06)]_59 chr17:63843037-63843537 1.62e-02 100 chr17:7844009-7844509 1.40e-01 100 chr17:64506506-64507006 1.01e-02 21_[-3(6.64e-05)]_57 chr1:10430146-10430646 9.03e-01 100 chr1:226062668-226063168 1.30e-03 70_[-3(7.96e-07)]_8 chr20:36092945-36093445 1.53e-07 42_[+1(3.07e-09)]_13_[+2(7.04e-07)]_\ 7 chr19:12696394-12696894 9.11e-01 100 chr22:39519687-39520187 9.96e-01 100 chr14:24036512-24037012 1.72e-01 100 chr15:72117548-72118048 3.83e-02 13_[-3(3.03e-06)]_65 chr12:389112-389612 4.77e-06 73_[+3(2.72e-11)]_5 chr1:226309333-226309833 5.71e-01 100 chr19:11482291-11482791 4.76e-03 12_[-6(1.53e-05)]_34_[+3(1.06e-06)]_\ 20 chr13:51452588-51453088 3.49e-01 100 chr19:6460193-6460693 3.78e-01 100 chr5:139765278-139765778 1.48e-03 4_[-5(6.08e-05)]_80 chr1:40691616-40692116 5.43e-05 50_[+1(1.36e-07)]_28 chr19:43754478-43754978 2.18e-01 100 chr1:11980216-11980716 4.83e-03 21_[+1(1.58e-05)]_16_[-3(5.59e-05)]_\ 19 chr3:15206169-15206669 9.68e-01 100 chr19:36215066-36215566 1.09e-04 13_[-6(1.27e-05)]_45_[+1(1.48e-06)]_\ 8 chr19:37595014-37595514 2.34e-07 [+1(1.58e-08)]_78 chr20:25248112-25248612 1.67e-01 83_[+7(8.86e-05)]_8 chr7:94655813-94656313 9.35e-01 100 chr21:43776503-43777003 7.40e-01 100 chr12:57752249-57752749 5.52e-02 7_[-3(4.29e-05)]_71 chr2:27050497-27050997 5.95e-01 100 chr15:74546157-74546657 3.73e-04 22_[+1(2.35e-06)]_56 chr17:38558983-38559483 1.89e-01 32_[-3(5.59e-05)]_46 chr17:8745813-8746313 5.21e-02 100 chr1:232950496-232950996 1.77e-01 85_[-6(5.08e-06)]_3 chr9:136848024-136848524 1.47e-01 100 chr21:25607299-25607799 8.34e-02 4_[+3(2.45e-05)]_74 chr1:42335157-42335657 1.84e-02 9_[+4(3.95e-08)]_75 chr6:83859493-83859993 8.94e-01 100 chr5:171387232-171387732 8.86e-01 100 chr17:45131853-45132353 6.25e-01 100 chr6:158852897-158853397 5.20e-14 [-5(8.50e-07)]_6_[-2(2.41e-08)]_4_\ [-2(3.00e-08)]_8_[-2(1.12e-05)]_1_[-5(7.13e-05)]_1 chr7:101138317-101138817 7.32e-04 57_[+7(3.71e-05)]_34 chr16:3264026-3264526 8.92e-02 1_[-3(4.92e-06)]_2_[-3(2.35e-06)]_\ 53 chr19:29665451-29665951 1.45e-01 100 chr12:57112002-57112502 2.91e-16 19_[-1(2.07e-14)]_1_[-2(1.12e-10)]_\ 42 chr5:611720-612220 7.55e-02 39_[-6(2.31e-05)]_24_[-5(8.02e-05)]_\ 9 chr19:36070202-36070702 2.53e-11 50_[+8(2.13e-18)]_7 chr1:151070344-151070844 4.65e-01 100 chr3:15860034-15860534 2.04e-03 48_[+5(6.45e-06)]_36 chr10:102504285-10250478 3.62e-06 15_[-3(7.22e-05)]_24_[-3(1.43e-07)]_\ [+2(4.49e-06)]_1 chr5:77644615-77645115 2.90e-05 33_[+3(1.51e-10)]_9_[+3(4.91e-08)]_\ 14 chr5:116574619-116575119 3.83e-01 100 chr17:44014625-44015125 3.01e-02 100 chr1:234608188-234608688 2.57e-04 6_[+3(4.41e-07)]_72 chr19:35879897-35880397 2.31e-05 7_[-5(4.12e-05)]_77 chr12:1662739-1663239 9.81e-01 100 chr6:169395990-169396490 1.44e-02 100 chr20:62302405-62302905 9.68e-01 100 chr12:990680-991180 3.26e-17 57_[+1(4.15e-14)]_21 chr19:1512559-1513059 6.68e-05 33_[-4(1.09e-05)]_2_[+6(1.99e-05)]_\ 37 chr16:88443066-88443566 5.33e-03 58_[-1(9.91e-06)]_20 chr19:34254132-34254632 7.05e-01 100 chr17:40318146-40318646 9.57e-01 100 chr15:50354934-50355434 2.31e-01 100 chr17:81513130-81513630 1.67e-01 100 chr17:78254349-78254849 5.80e-06 27_[+4(4.11e-10)]_12_[+1(1.48e-05)]_\ 23 chr6:43575395-43575895 2.21e-01 39_[-3(9.99e-05)]_39 chr7:100478079-100478579 5.80e-22 44_[-3(2.06e-10)]_6_[+1(2.07e-14)]_\ 6 chr5:7868716-7869216 8.79e-01 100 chr17:79810338-79810838 3.83e-06 28_[-1(3.96e-06)]_3_[+6(2.70e-06)]_\ 35 chr17:80415105-80415605 7.55e-01 100 chr21:29073488-29073988 4.00e-01 100 chr17:73310462-73310962 2.00e-12 77_[-1(6.21e-12)]_1 chr12:66169702-66170202 8.53e-01 100 chr16:11915743-11916243 3.82e-02 [+1(4.82e-05)]_78 chr19:40662805-40663305 9.05e-01 100 chr14:101761035-10176153 2.15e-01 100 chr1:230642139-230642639 4.76e-01 100 chr1:184386510-184387010 2.71e-13 49_[-1(1.92e-11)]_6_[-1(8.48e-13)]_\ 1 chr5:36241792-36242292 1.29e-04 30_[-3(6.64e-05)]_23_[+1(4.58e-06)]_\ 3 chr19:45092776-45093276 1.69e-03 3_[-7(9.67e-05)]_12_[+3(1.08e-05)]_\ 44_[-7(1.74e-05)]_1 chr19:10653973-10654473 4.81e-02 24_[+3(6.21e-06)]_54 chr19:50790897-50791397 2.82e-01 100 chr19:12610882-12611382 9.97e-01 100 chr10:62817092-62817592 7.56e-15 1_[-1(4.63e-12)]_17_[-5(1.77e-05)]_\ 9_[-1(2.56e-07)]_13 chr19:49443696-49444196 1.40e-01 88_[+6(3.62e-05)] chr19:15449226-15449726 1.53e-01 23_[-6(6.97e-06)]_28_[-6(3.92e-05)]_\ 25 chr6:30716888-30717388 3.55e-01 100 chr11:1418015-1418515 1.03e-01 100 chr5:177006296-177006796 9.99e-01 100 chr19:33177103-33177603 3.19e-01 19_[+5(2.43e-05)]_65 chr22:30423865-30424365 9.92e-01 100 chr9:137240421-137240921 9.99e-01 100 chr10:100286279-10028677 1.85e-06 47_[-1(1.36e-07)]_31 chr14:23555902-23556402 9.14e-01 100 chr19:36170520-36171020 2.60e-06 27_[+3(1.48e-05)]_1_[+5(2.24e-06)]_\ 34 chr9:135500293-135500793 7.95e-01 100 chr19:39414239-39414739 1.04e-02 9_[-3(1.06e-06)]_69 chr6:27495640-27496140 3.53e-01 100 chr13:110714919-11071541 2.23e-01 100 chr17:39401732-39402232 3.42e-01 75_[+3(3.92e-05)]_3 chr7:100081494-100081994 6.46e-06 1_[-2(3.39e-07)]_1_[-3(3.26e-05)]_\ 60 chr20:44475793-44476293 8.13e-01 100 chr17:5419503-5420003 2.48e-01 100 chr19:17309587-17310087 7.40e-02 2_[+3(9.23e-05)]_39_[+3(9.99e-05)]_\ 15 chr8:9151296-9151796 3.36e-02 17_[-9(8.10e-05)]_52 chr16:2968651-2969151 9.15e-01 100 chr12:55830485-55830985 2.63e-01 100 chr16:30762239-30762739 5.53e-01 100 chr10:17228362-17228862 6.70e-01 100 chr12:57726093-57726593 4.64e-06 19_[-3(3.58e-05)]_42_[+2(2.82e-07)]_\ 1 chr19:34171976-34172476 8.47e-01 100 chr16:66880079-66880579 1.52e-01 88_[-6(6.20e-05)] chr7:101173131-101173631 8.64e-01 100 chr10:102152089-10215258 2.86e-02 50_[+6(1.99e-05)]_38 chr19:3056270-3056770 2.80e-06 7_[-3(4.37e-06)]_6_[-3(2.25e-08)]_\ [-5(1.50e-05)]_27 chr7:100894785-100895285 3.23e-01 100 chr10:73413594-73414094 4.35e-02 28_[-1(8.53e-05)]_50 chr15:84715938-84716438 1.76e-01 100 chr1:43946610-43947110 1.91e-01 100 chr1:226186614-226187114 2.54e-01 100 chr17:3890078-3890578 6.66e-02 66_[-4(7.69e-05)]_18 chr19:40191762-40192262 9.02e-03 78_[-6(2.70e-06)]_10 chr10:75379152-75379652 1.57e-02 37_[+10(8.44e-06)]_42 chr19:13151269-13151769 9.43e-04 33_[-3(9.17e-07)]_45 chr15:70494068-70494568 1.27e-02 8_[-7(4.23e-05)]_83 chr15:66701459-66701959 8.74e-02 80_[+6(2.31e-05)]_8 chr19:999940-1000440 9.78e-01 100 chr22:49975477-49975977 1.88e-13 1_[+1(2.80e-07)]_9_[+2(6.41e-07)]_6_\ [+5(3.32e-07)]_14_[+5(2.33e-10)] chr19:36418552-36419052 7.34e-01 100 chr6:31652032-31652532 6.08e-08 77_[-1(4.32e-09)]_1 chr2:64524222-64524722 2.00e-01 64_[-6(8.64e-05)]_24 chr19:36573419-36573919 4.11e-01 100 chr6:24774906-24775406 1.44e-01 26_[-6(5.13e-05)]_62 chr1:150235782-150236282 6.81e-16 4_[+6(3.01e-05)]_20_[-1(1.24e-07)]_\ 12_[-1(1.23e-13)]_8 chr7:150323013-150323513 9.43e-01 100 chr19:33302821-33303321 1.56e-02 48_[+2(6.61e-05)]_36 chr1:109100038-109100538 3.48e-08 29_[+2(3.10e-06)]_1_[+1(2.15e-08)]_\ 11_[+5(8.84e-06)]_5 chr19:38374647-38375147 3.25e-01 100 chr22:49918108-49918608 1.04e-01 27_[+7(4.70e-05)]_64 chr9:130712978-130713478 4.40e-03 59_[-6(2.70e-06)]_29 chr2:152718008-152718508 6.90e-01 100 chr2:241881307-241881807 4.31e-05 83_[+2(5.87e-07)]_1 chr19:7197754-7198254 3.51e-10 3_[+2(1.73e-08)]_9_[+2(1.73e-08)]_4_\ [+1(1.15e-08)]_8_[+2(7.53e-08)]_6 chr6:28943446-28943946 4.11e-15 7_[-8(8.16e-22)]_50 chr10:1056402-1056902 1.15e-01 26_[-6(1.27e-05)]_62 chr22:41946322-41946822 9.50e-01 100 chr14:23010160-23010660 1.84e-04 36_[-7(4.60e-07)]_55 chr4:189234917-189235417 1.10e-06 8_[+5(9.68e-05)]_1_[+4(8.00e-05)]_\ 10_[+5(3.48e-06)]_[-7(2.24e-05)]_[+5(9.68e-05)]_8 chr19:10602436-10602936 5.95e-01 76_[+6(2.31e-05)]_12 chr22:30246134-30246634 4.52e-04 16_[-3(6.64e-05)]_26_[-3(1.50e-08)]_\ 14 chr19:5790750-5791250 8.44e-01 100 chr9:18976696-18977196 7.76e-07 30_[+7(7.76e-06)]_61 chr1:228486997-228487497 2.73e-09 16_[+8(1.37e-17)]_41 chr7:140696617-140697117 1.13e-03 14_[+1(8.43e-07)]_64 chr1:185156973-185157473 4.41e-16 19_[-4(3.07e-09)]_22_[+2(9.62e-10)]_\ 27 chr19:13880007-13880507 5.86e-02 100 chr1:156661323-156661823 2.62e-14 33_[+1(2.07e-14)]_45 chr1:942796-943296 2.39e-01 100 chr17:75046599-75047099 5.21e-02 100 chr12:110742929-11074342 5.43e-02 100 chr14:105300915-10530141 6.62e-01 57_[-6(3.34e-05)]_31 chr17:51153339-51153839 9.25e-01 100 chr10:117216632-11721713 7.90e-01 100 chr12:111599444-11159994 5.75e-01 100 chr13:50081484-50081984 1.48e-03 52_[+6(5.08e-06)]_36 chr1:205122027-205122527 5.53e-01 100 chr14:23301833-23302333 4.68e-03 100 chr1:228782557-228783057 6.20e-12 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chr19:36054814-36055314 7.34e-01 100 chr12:46383551-46384051 3.74e-01 100 chr12:52903334-52903834 9.77e-01 100 chr20:3173574-3174074 5.70e-01 100 chr1:227734965-227735465 4.83e-01 100 chr19:4791462-4791962 1.16e-02 11_[-4(1.09e-05)]_73 chr11:112961080-11296158 9.63e-04 34_[+3(1.64e-05)]_[+6(2.73e-05)]_32 chr10:101694527-10169502 4.25e-02 10_[+3(4.41e-07)]_[+3(3.92e-05)]_46 chr19:39033050-39033550 8.36e-14 15_[+9(2.38e-16)]_17_[+7(3.79e-06)]_\ 28 chr19:44207485-44207985 1.25e-01 100 chr1:153677715-153678215 1.58e-05 8_[+6(2.50e-05)]_51_[+7(3.79e-06)]_\ 20 chr15:74695632-74696132 7.88e-04 38_[+6(2.31e-05)]_24_[-5(2.19e-05)]_\ 10 chr17:81253428-81253928 3.00e-02 30_[+3(9.99e-05)]_48 chr19:35869312-35869812 4.63e-03 48_[-6(6.97e-06)]_40 chr16:1971778-1972278 6.25e-01 100 chr15:99565573-99566073 7.35e-03 49_[-3(2.67e-06)]_29 chr19:36772365-36772865 1.14e-04 47_[-1(1.13e-07)]_31 chr19:4723701-4724201 2.17e-01 100 chr15:70097468-70097968 4.91e-02 34_[+3(2.67e-06)]_44 chr1:223992357-223992857 7.31e-01 100 chr1:231040269-231040769 1.90e-01 100 chr19:39833804-39834304 2.34e-01 100 chr1:236395242-236395742 4.84e-04 11_[-3(4.06e-08)]_67 chr17:68511929-68512429 2.31e-01 1_[-3(1.06e-06)]_14_[-3(6.09e-05)]_\ 9_[-3(4.29e-05)]_10 chrX:41084713-41085213 2.43e-01 100 chr2:172098601-172099101 1.38e-10 3_[+1(4.80e-08)]_1_[+5(6.89e-06)]_\ 33_[+2(5.78e-09)]_9 chr9:132944428-132944928 7.35e-01 48_[+3(7.22e-05)]_30 chr1:21345588-21346088 3.09e-01 100 chr20:62386587-62387087 8.91e-01 100 chr9:133030743-133031243 4.80e-01 100 chr8:143597308-143597808 9.99e-01 100 chr19:58519475-58519975 5.55e-01 100 chr1:244970751-244971251 3.00e-01 100 chr19:17075109-17075609 3.88e-01 100 chr8:144020132-144020632 3.52e-02 7_[+3(9.23e-05)]_26_[+3(1.34e-05)]_\ 23 chr16:68244894-68245394 5.98e-01 45_[-8(6.08e-05)]_12 chr17:59619511-59620011 1.94e-01 10_[+3(3.03e-06)]_68 chr3:194134813-194135313 3.88e-12 26_[-1(1.67e-11)]_3_[-2(7.04e-07)]_\ 23_[+7(1.41e-05)]_1 chr10:133111566-13311206 2.95e-02 100 chr12:132597484-13259798 1.86e-08 1_[+2(9.15e-07)]_[+2(3.34e-06)]_3_\ [+3(5.13e-07)]_15_[+1(3.57e-08)]_5 chr19:34134411-34134911 7.50e-01 100 chr6:43321906-43322406 9.76e-04 68_[+7(1.22e-06)]_23 chr10:21525630-21526130 7.54e-03 35_[+7(1.22e-06)]_56 chr12:30695471-30695971 1.66e-03 27_[-7(8.61e-06)]_3_[+3(7.84e-05)]_\ 39 chr12:6689167-6689667 8.83e-02 43_[+3(3.26e-05)]_35 chr1:26169681-26170181 1.24e-01 52_[+6(4.53e-05)]_36 chr20:58650957-58651457 9.68e-01 100 chr19:6737177-6737677 6.21e-01 100 chr19:6532169-6532669 9.27e-12 16_[+1(3.84e-09)]_19_[+2(2.41e-08)]_\ 2_[+2(5.20e-06)]_9 chrX:73944013-73944513 1.79e-01 100 chr7:100673365-100673865 2.34e-01 100 chr19:35899503-35900003 2.53e-01 52_[-6(6.20e-05)]_36 chr11:120335854-12033635 3.87e-01 100 chr1:93078904-93079404 1.93e-01 100 chr19:38336509-38337009 7.46e-04 30_[-3(5.12e-05)]_21_[-6(2.70e-06)]_\ 15 chr2:86440840-86441340 1.10e-03 20_[-7(1.62e-07)]_71 chr19:13846969-13847469 7.86e-01 100 chr6:43771466-43771966 1.35e-01 43_[-6(2.31e-05)]_45 chr12:48851908-48852408 3.14e-01 53_[-5(3.93e-05)]_31 chr16:29805519-29806019 1.95e-02 100 chr19:35510260-35510760 9.55e-01 100 chr5:69369393-69369893 4.61e-01 76_[-5(2.83e-05)]_8 chr19:38851513-38852013 9.98e-04 48_[+7(4.38e-06)]_43 chr16:30698655-30699155 5.69e-02 38_[+3(5.59e-05)]_40 chr7:100705348-100705848 7.08e-01 100 chr1:997879-998379 9.84e-01 100 chr19:49118715-49119215 1.02e-04 39_[-5(1.18e-06)]_45 chr10:25934670-25935170 3.81e-02 31_[-3(1.59e-06)]_47 chr1:44775081-44775581 8.46e-03 7_[+6(5.41e-05)]_81 chr2:47176354-47176854 2.07e-02 55_[+6(1.53e-05)]_33 chr8:78515924-78516424 5.24e-02 51_[+7(1.03e-05)]_40 chr16:87383836-87384336 4.21e-01 100 chr10:74825570-74826070 1.56e-02 83_[+5(6.08e-05)]_1 chr1:10210070-10210570 9.84e-01 100 chr12:31119001-31119501 4.22e-01 100 chr17:79839554-79840054 5.36e-01 24_[+6(2.50e-05)]_64 chr12:1661943-1662443 1.52e-01 26_[+3(7.84e-05)]_12_[+3(3.92e-05)]_\ 18 chr10:101442022-10144252 1.58e-20 35_[+3(5.53e-06)]_[+2(7.04e-07)]_1_\ [+1(2.07e-14)]_4 chr1:212791572-212792072 6.99e-01 100 chr6:16759810-16760310 3.22e-08 2_[-1(2.67e-10)]_76 chr19:1173499-1173999 6.66e-01 100 chr15:65610854-65611354 1.46e-01 100 chr1:3992059-3992559 2.91e-01 30_[+10(3.63e-05)]_11_\ [+10(3.63e-05)]_17 chr5:37371061-37371561 4.71e-03 23_[-3(2.25e-08)]_10_[-3(2.67e-06)]_\ 23 chr22:20496077-20496577 2.09e-07 17_[+3(1.84e-08)]_1_[+3(4.37e-06)]_\ 2_[+3(1.06e-06)]_14 chr19:40444364-40444864 9.08e-02 14_[-8(9.37e-05)]_43 chr20:38446438-38446938 1.31e-01 100 chr13:111153234-11115373 2.58e-01 3_[-3(4.69e-05)]_75 chr1:154973871-154974371 9.78e-03 1_[+7(2.39e-06)]_90 chr17:73311584-73312084 5.00e-01 100 chr17:77233837-77234337 1.63e-11 15_[+9(3.08e-13)]_10_[+9(1.31e-14)]_\ 13 chr14:103562828-10356332 9.87e-01 100 chr6:37819209-37819709 3.39e-02 31_[-6(7.27e-07)]_57 chr17:29390099-29390599 2.71e-02 37_[+10(5.68e-05)]_42 chr19:2475388-2475888 2.95e-04 4_[-3(3.03e-06)]_74 chr10:69629821-69630321 2.28e-04 1_[+3(1.47e-09)]_28_[+3(1.39e-06)]_\ 4_[+3(6.64e-05)]_1 chr2:229921929-229922429 3.04e-01 100 chr17:50397259-50397759 7.13e-01 100 chr5:134371102-134371602 3.73e-02 70_[+6(2.70e-06)]_18 chr5:173057053-173057553 3.96e-02 77_[-3(7.22e-05)]_1 chr19:40420972-40421472 7.99e-02 82_[+6(6.36e-06)]_6 chr5:177311901-177312401 2.55e-03 37_[-1(3.42e-06)]_41 chr1:54406491-54406991 5.47e-01 75_[-6(9.69e-06)]_13 chr1:46132495-46132995 4.18e-01 100 chr19:40750107-40750607 7.74e-03 60_[+7(9.21e-07)]_31 chr10:93702410-93702910 1.36e-01 64_[-3(3.03e-06)]_14 chr5:137754384-137754884 1.02e-01 77_[+3(7.22e-05)]_1 chr15:72783616-72784116 9.91e-01 100 chr2:113583650-113584150 3.44e-01 100 chr17:78558263-78558763 5.59e-01 100 chr19:37655844-37656344 5.49e-01 100 chr1:234723898-234724398 1.31e-11 27_[-3(2.06e-10)]_13_[-3(1.84e-08)]_\ 16 chr10:3314384-3314884 8.24e-03 6_[-3(1.82e-05)]_39_[-6(1.36e-05)]_\ 21 chr10:100912912-10091341 7.06e-01 100 chr1:229342566-229343066 1.00e-01 38_[-3(6.64e-05)]_40 chr6:131628059-131628559 9.95e-01 100 chr19:37218011-37218511 6.13e-02 5_[-3(5.12e-05)]_73 chr1:155080826-155081326 5.40e-01 100 chr15:65792166-65792666 3.66e-01 100 chr22:41091632-41092132 3.65e-01 100 chr17:4967457-4967957 2.47e-01 100 chr17:4703926-4704426 2.12e-05 18_[-2(4.19e-06)]_15_[-6(7.27e-07)]_\ 1_[-6(6.97e-06)]_26 chr1:183471824-183472324 5.06e-05 24_[-3(1.39e-06)]_13_[+2(5.06e-05)]_\ 25 chr5:138752884-138753384 1.59e-01 70_[-3(9.99e-05)]_8 chr19:42220136-42220636 1.06e-02 [+2(8.12e-05)]_18_[-3(1.01e-07)]_44 chr19:41859740-41860240 2.04e-02 71_[+3(2.45e-05)]_7 chr1:3900434-3900934 7.04e-01 100 chr19:35717304-35717804 2.77e-02 12_[-4(3.79e-09)]_36_[+4(4.28e-07)]_\ 20 chr16:30957601-30958101 9.87e-01 100 chr19:53979825-53980325 2.61e-14 33_[+1(2.07e-14)]_2_[+1(6.10e-06)]_\ 21 chr15:65868948-65869448 7.52e-05 32_[+6(5.13e-05)]_1_[-5(4.02e-07)]_\ 39 chr19:40190863-40191363 2.55e-01 100 chr1:205750271-205750771 3.24e-04 24_[+7(4.60e-07)]_67 chr19:38402988-38403488 3.41e-03 46_[+5(1.38e-06)]_38 chr1:155000757-155001257 2.57e-03 45_[+10(3.63e-05)]_34 chrX:53225048-53225548 3.85e-01 100 chr7:30594504-30595004 7.20e-01 100 chr5:96934815-96935315 6.80e-01 100 chr19:984319-984819 5.90e-01 100 chr1:10793923-10794423 8.18e-15 12_[+1(2.90e-11)]_20_[+1(2.07e-14)]_\ 24 chr5:1950700-1951200 1.15e-02 84_[+2(3.88e-06)] chr1:224113876-224114376 1.58e-01 69_[-3(7.22e-05)]_9 chr5:132963519-132964019 3.76e-01 100 chr8:630759-631259 3.72e-05 58_[-2(3.83e-05)]_4_[-5(1.67e-07)]_\ 6 chr19:40602209-40602709 1.62e-01 100 chr1:155244585-155245085 1.91e-04 7_[-3(5.95e-07)]_8_[-3(6.89e-07)]_6_\ [-3(2.06e-10)]_13 chr19:49850656-49851156 1.38e-01 70_[+3(8.51e-05)]_8 chr19:44212436-44212936 2.07e-01 1_[+4(5.42e-05)]_83 chr14:103105046-10310554 6.22e-11 9_[+1(2.73e-09)]_12_[+2(3.39e-08)]_\ 20_[+2(1.17e-08)]_5 chr13:113296742-11329724 1.29e-02 16_[+3(2.67e-06)]_8_[+6(3.01e-05)]_\ 42 chrX:1392304-1392804 2.40e-01 41_[+4(3.57e-05)]_43 chr3:9731329-9731829 7.17e-03 100 chr1:16644478-16644978 8.71e-01 100 chr16:30698085-30698585 8.96e-01 100 chr17:74514061-74514561 3.03e-09 2_[+10(9.87e-14)]_8_[+10(3.30e-07)]_\ 27_[+10(7.11e-10)] chr1:26620545-26621045 1.48e-02 78_[+3(3.58e-05)] chr17:45148407-45148907 1.28e-03 19_[+2(4.19e-06)]_65 chr19:39412542-39413042 9.59e-01 100 chr12:49060556-49061056 1.29e-01 16_[-7(3.79e-06)]_75 chr6:113971028-113971528 5.24e-02 76_[-3(4.37e-06)]_2 chr19:35947345-35947845 2.28e-18 1_[-4(7.50e-08)]_36_[+1(2.07e-14)]_\ 1_[+2(1.12e-10)]_8 chr7:102572210-102572710 5.47e-01 100 chr19:33796972-33797472 7.87e-14 76_[+1(2.07e-14)]_2 chr19:35114569-35115069 7.36e-02 14_[-2(5.34e-05)]_70 chr4:77075913-77076413 1.57e-01 100 chr19:39390713-39391213 4.65e-01 100 chr1:167936290-167936790 9.80e-03 34_[-5(4.02e-07)]_50 chr8:1823319-1823819 3.18e-01 33_[+6(6.20e-05)]_55 chr17:75515638-75516138 3.36e-01 70_[-10(5.04e-05)]_9 chr15:72375757-72376257 8.79e-01 100 chr14:103520913-10352141 3.03e-02 27_[+3(2.00e-07)]_51 chr16:2961757-2962257 1.96e-01 100 chr12:124914549-12491504 2.29e-01 100 chr17:82586098-82586598 2.22e-01 10_[-3(1.39e-06)]_26_[-3(1.39e-06)]_\ 20 chr19:36604711-36605211 1.45e-09 24_[-2(9.15e-07)]_19_[-1(1.20e-10)]_\ 19 chr21:39313493-39313993 1.92e-01 100 chr19:1383518-1384018 5.76e-01 100 chr14:22982571-22983071 3.69e-03 42_[-3(3.78e-07)]_36 chr19:44071951-44072451 1.52e-01 100 chr19:35628796-35629296 3.62e-01 100 chr15:89334694-89335194 8.76e-01 100 chr1:125179946-125180446 3.96e-02 30_[+3(1.08e-05)]_48 chr1:109484053-109484553 9.21e-02 100 chr19:39125750-39126250 4.26e-01 100 chr1:236097026-236097526 9.66e-01 100 chr12:12266890-12267390 7.02e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************