# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:09 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:11 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:18:53 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.200 C 0.287 G 0.306 T 0.208


MOTIF TCCCTDR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TCCCTDR    YHAGGGA        297         71   9.7e-048   3.1e-043
#          TCCCTAA    TTAGGGA         88          7   1.6e-020   5.1e-016
#          TCCCTTA    TAAGGGA         50          8   3.7e-009   1.2e-004
#          TCCCTTG    CAAGGGA         50          9   1.3e-008   4.1e-004
#          TCCCTGG    CCAGGGA         74         22   1.4e-008   4.4e-004
#          TCCCTGA    TCAGGGA         49         17   3.2e-005   1.0e+000
#          TCCCTAG    CTAGGGA         38         13   2.4e-004   7.6e+000

letter-probability matrix: alength= 4 w= 7 nsites= 385 E= 3.1e-043
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.371429 0.000000 0.358442 0.270130
0.550649 0.000000 0.449351 0.000000


MOTIF BTTAGGG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     BTTAGGG    CCCTAAV         60         14   1.2e-008   3.8e-004
#          CTTAGGG    CCCTAAG         20          2   5.3e-005   1.6e+000
#          TTTAGGG    CCCTAAA         24          7   1.5e-003   4.6e+001
#          GTTAGGG    CCCTAAC         19          6   6.8e-003   2.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 81 E= 3.8e-004
0.000000 0.246914 0.444444 0.308642
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF HAGGGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      HAGGGA     TCCCTD        151         82   3.0e-007   9.2e-003
#           TAGGGA     TCCCTA         33         10   2.4e-004   7.4e+000
#           AAGGGA     TCCCTT         57         30   1.8e-003   5.5e+001
#           CAGGGA     TCCCTG         73         44   3.1e-003   9.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 180 E= 9.2e-003
0.338889 0.461111 0.000000 0.200000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 49.61 seconds