Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
BNNCSMCGGTCCCTDR | 16 | TGCCCACGGTCCCTAA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | 31 | AGCTCATAGCCTGGAGCTTCTTAACCTTTAG |
WYACACACACAYACACACACACACACACACA | 31 | ACACACACACACACACACACACACACACACA |
GRRRRKRVKGRGRVNGRRGGRGGWGWDRSAR | 31 | GGAGGGGGGGAGAGGGAGGGAGGAGAGGGAG |
CTTTCTTTGACTCGGAAAGGGA | 22 | CTTTCTTTGACTCGGAAAGGGA |
GGGTAGAGACAT | 12 | GGGTAGAGACAT |
CTAGGGTTRKGGTKAGGKKWRGRGTTAGGGT | 31 | CTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT |
TTTTTYYWTKTTYYCT | 16 | TTTTTCTTTTTTCCCT |
TTARGGRATKTCHTCW | 16 | TTAAGGGATTTCTTCA |
RGGGAYYDTCTSMMAA | 16 | AGGGATCGTCTGCAAA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.205 C 0.295 G 0.295 T 0.205
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | + | 5045651 | 5045681 | 7.51e-20 | 1.05e-14 | AGCTCATAGCCTGGAGCTTCTTAACCTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | + | 72879131 | 72879161 | 7.51e-20 | 1.05e-14 | AGCTCATAGCCTGGAGCTTCTTAACCTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | + | 76549108 | 76549138 | 7.51e-20 | 1.05e-14 | AGCTCATAGCCTGGAGCTTCTTAACCTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | - | 75486479 | 75486509 | 7.51e-20 | 1.05e-14 | AGCTCATAGCCTGGAGCTTCTTAACCTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | + | 102363657 | 102363687 | 3.07e-19 | 3.44e-14 | AGCTCATAGGCTGGAGCTTCTTAACCTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | - | 75528299 | 75528329 | 7.1e-18 | 6.64e-13 | AGCTCATAGCCTGGAGTTTCTTATCCTCTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | + | 102363578 | 102363608 | 1.77e-17 | 1.42e-12 | AGCTCATAGCCTGGAGCTTCTTCACCTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | + | 6729569 | 6729599 | 9.82e-17 | 6.89e-12 | CTCATATAGCCTGGGGCTTCTTAACCTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | - | 6707126 | 6707156 | 1.39e-09 | 8.67e-05 | TTCTCTTAGCATAGAGCCTCTTAACCGCTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr6 | + | 125780556 | 125780586 | 1e-07 | 0.00562 | AAAATATATCCTGGAAATTCTCATTCTTTAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr15 | + | 88638678 | 88638708 | 1.9e-06 | 0.0968 | AGCTCCAGTCCTGGGGATGTTTATTCTCTGG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | - | 159915751 | 159915781 | 2.84e-06 | 0.133 | AGCTGATGCCCAGCAGTTTCATGCCCTTCAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr15 | - | 91056323 | 91056353 | 4.42e-06 | 0.191 | ATCACTTATCATGGAGCTTCTGGATGTGTCA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr6 | + | 26323072 | 26323102 | 8.33e-06 | 0.318 | ATCTTCTGGGCCTGCGCTActcaaaatttgg |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr11 | + | 67805858 | 67805888 | 8.5e-06 | 0.318 | AGCACGTGGCCAGGCGCTGCTCGGACTCTGG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | + | 34173661 | 34173691 | 1.22e-05 | 0.427 | AGAAAATAAACTTTAGCTCCTGAATCTTAAA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | + | 18328994 | 18329024 | 1.45e-05 | 0.463 | CTCTTATACTTTGAACTTTAGTACCCTCCAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 162024267 | 162024297 | 1.52e-05 | 0.463 | CGTTTGTTCCCAGGCGTTTCTTTTCCCTGAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr21 | + | 32414115 | 32414145 | 1.6e-05 | 0.463 | AGCCCTTAGGTCAGAGGTTCTTTGCTTTGAA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | - | 42220350 | 42220380 | 1.69e-05 | 0.463 | CTCTTATCTCCTGCAGCCCCTGCCGCTCTTG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr21 | - | 31558521 | 31558551 | 1.73e-05 | 0.463 | ATTTTATCGGCTGATTTTTGTCAACTTCGGG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | - | 45783533 | 45783563 | 1.82e-05 | 0.463 | AGGCAAGAGGCTGGATCTGGGAACCCTTTGG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chrX | + | 133921671 | 133921701 | 1.96e-05 | 0.477 | GCTTTTGAGCCTTGATTTTTTCAACCTTGAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr4 | - | 90128464 | 90128494 | 2.09e-05 | 0.479 | CGCACACAACCTGGGGCCCTTGACGCTCCAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | - | 45099547 | 45099577 | 2.14e-05 | 0.479 | TGCTGACAGCCAGGCTCTCCTTGCCCTCTCT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr4 | + | 75630449 | 75630479 | 2.34e-05 | 0.505 | CGCCCAGTACCTGGAGCCTGGGAACCTGCAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr11 | + | 73983647 | 73983677 | 2.58e-05 | 0.517 | AGGAGATGGACCGGGCCTGGTTCGCCTTTAA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 228407207 | 228407237 | 2.61e-05 | 0.517 | AGTCCGCAGCCTGGGGCATTGGAGCCCTTCG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | + | 55338947 | 55338977 | 2.73e-05 | 0.517 | TGTTCTGAGTGTGGAGCTTATTATTCTCGGC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | - | 35124231 | 35124261 | 2.78e-05 | 0.517 | AGGAGATATTTTTGGGTGTTTTGAGTTTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr14 | + | 59920303 | 59920333 | 2.86e-05 | 0.517 | CGTACATCACCGGGAGTCTTTGATCCCCTCT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | - | 108692209 | 108692239 | 3.1e-05 | 0.517 | CTCAGTTGGGCTGGAGCGTCCTCTTCCTAGG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 185317719 | 185317749 | 3.13e-05 | 0.517 | CCCCCCTAGACTGGAGCTGCTCGTCGTGGAC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | - | 35764376 | 35764406 | 3.14e-05 | 0.517 | CGCTCAGTGCCTGGGGCAGCCCCTCCTCCCT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | - | 159915850 | 159915880 | 3.31e-05 | 0.531 | AGCACTTTGCATGGGGAATGCTAGCACATAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | - | 35578908 | 35578938 | 3.66e-05 | 0.571 | CTCCCACCGCCCCTAGCTTCATCGCCTGCAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr9 | - | 133031113 | 133031143 | 4.01e-05 | 0.581 | CGCCCAGAGTCGGCAGCATCTTAGCCACATC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr3 | - | 11582674 | 11582704 | 4.03e-05 | 0.581 | CCTTCCTCTCCTGTGTTTTCTTTAGCCTTAT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr3 | - | 61895148 | 61895178 | 4.29e-05 | 0.581 | GACTCATACGCATGAGTTTCAGAAGCCCTGT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr12 | + | 6945000 | 6945030 | 4.39e-05 | 0.581 | tgcacatagcctgagggtaattttatataat |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr5 | - | 150758430 | 150758460 | 4.39e-05 | 0.581 | TTCTCCCATCCTGAAAGTTCTGTTCCTCTTT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr12 | - | 6944609 | 6944639 | 4.49e-05 | 0.581 | AGCTGAAGCCATAGGCTTTGATAACCTCCTG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr6 | - | 32786082 | 32786112 | 4.68e-05 | 0.581 | GGGATGTTAACTGGGTCATCTTCACCAGTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr22 | + | 50644312 | 50644342 | 4.84e-05 | 0.581 | atcttgcagcctccagcagcatgactcctaa |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr10 | - | 73496086 | 73496116 | 4.95e-05 | 0.581 | ATCCCTTGGCCTCGTCCTGTTTCTCTCCTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | + | 79005446 | 79005476 | 4.95e-05 | 0.581 | AGCAGACAGCCAAGAGGGTTTGTTTCTCCAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr10 | + | 100370935 | 100370965 | 4.95e-05 | 0.581 | ACTCCACCTCCTGACCCGTCTTAACATTCAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr15 | - | 88638607 | 88638637 | 4.98e-05 | 0.581 | GTCTGATACTCAGTGGTCTCTTATGGGGTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | - | 6729651 | 6729681 | 5.21e-05 | 0.581 | AGGACAAGGGCCGGACTCTATTTCCCATGAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 7117758 | 7117788 | 5.26e-05 | 0.581 | TTCACTCAGCCACCAGCTCCTCCTCCTTTGT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr9 | + | 86600478 | 86600508 | 5.28e-05 | 0.581 | ATCACATTCTCTGTGTATTGTAATCCTAGAT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | - | 925481 | 925511 | 5.69e-05 | 0.602 | AGCACCTACGCTGGGCCTCGTGGACTCGGAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | - | 40123449 | 40123479 | 6.03e-05 | 0.602 | ACCCCTAACCCGGGGGTGCCTTAACCTCCTA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr22 | - | 23893972 | 23894002 | 6.28e-05 | 0.602 | ACCTCCTGTCTTTGGGCCACATGTCCTCAAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | + | 12610950 | 12610980 | 6.33e-05 | 0.602 | TGTGCTTAGCTTGGGGTCTCCTGGCCCCTTG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr12 | + | 31728965 | 31728995 | 6.33e-05 | 0.602 | CTCACAGATCCAGGAGCTGACTGACCCGCCG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chrX | - | 69616965 | 69616995 | 6.33e-05 | 0.602 | ACCTCCTCGACGGGAGCGTCGCCAACTTTTC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | + | 39997095 | 39997125 | 6.39e-05 | 0.602 | TTCTTAACGGTTCAGTCACCTTAACCGTTAT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 43120177 | 43120207 | 6.59e-05 | 0.602 | ccctccgagccaggtgcgggatatcatctcg |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr5 | + | 67780362 | 67780392 | 6.59e-05 | 0.602 | cgcacctggctgggagggtcctacactcacg |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr12 | - | 57520256 | 57520286 | 6.74e-05 | 0.602 | TTATTCTGGGGTGGTGCTTACAAACCCCTAT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr10 | - | 101354842 | 101354872 | 6.74e-05 | 0.602 | ATCTTCTTTAGTGAGGCCTCTTCCCTTCCAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr4 | - | 104491174 | 104491204 | 7.16e-05 | 0.602 | ACCTTATCCCCTGAACACTGCAGACCTTTGG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr9 | + | 137298096 | 137298126 | 7.16e-05 | 0.602 | GTCTTAGAGTGTGTGTCTACCTGCCCCCTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | - | 57578534 | 57578564 | 7.31e-05 | 0.602 | CCCTCATCCCCTGGGCATTCTTCTGTTCCCA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | + | 79811649 | 79811679 | 7.48e-05 | 0.602 | CTCCCTTACCCTCGTCCTCCTTCTCTTCAAA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr2 | + | 231781258 | 231781288 | 7.48e-05 | 0.602 | CTCCCCTCAGCTCCCGCTTCTGATCCCTTCT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr11 | - | 3642263 | 3642293 | 7.61e-05 | 0.602 | TACAGTTAGCCTCGAGAACCTTTGCTTTCAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr16 | + | 30787465 | 30787495 | 7.83e-05 | 0.602 | ATCTCAGATTTGGCGGCTGCTGATCCCCTGA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr19 | + | 45509080 | 45509110 | 7.83e-05 | 0.602 | CCCACATCCCCCGCATTTCCTGAACCCCTGC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr5 | + | 79508864 | 79508894 | 7.83e-05 | 0.602 | agcacattgtattggccttcctatcagcagc |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr2 | + | 86808592 | 86808622 | 7.83e-05 | 0.602 | CGAATTCAGTCTGCACCTGACTGACCTCGAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 145979650 | 145979680 | 7.83e-05 | 0.602 | AGCTGATTGGTTCCAGCCACTTGACATGCAA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr16 | - | 370643 | 370673 | 8e-05 | 0.602 | CTAACGGTGCCTTGAGCTGCTGCTGCTGTAT |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr10 | + | 102854451 | 102854481 | 8.05e-05 | 0.602 | GCCTGATAGTCCGGGGAGTCGCAGTCTTTCG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr17 | - | 40123335 | 40123365 | 8.39e-05 | 0.619 | ACTTCAGCTCCTCGATCTCCTTTTCCTTGGC |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr7 | - | 102288062 | 102288092 | 8.94e-05 | 0.626 | CAATTCCTGCCGGGAGTTGCCGGTCCCTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 75615213 | 75615243 | 8.98e-05 | 0.626 | AGGAAGTAGCCTGCAGGGACTCGGCCGGTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr6 | + | 32146203 | 32146233 | 9.02e-05 | 0.626 | aacagagaagctggatgattttaaattatgg |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr10 | + | 113563567 | 113563597 | 9.02e-05 | 0.626 | CCCAGGAAGTCTCGGCTTTCTTTTTGTTTGG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr9 | - | 62839431 | 62839461 | 9.03e-05 | 0.626 | GATAAATAGCTGGGACTTAATTAAACTAAAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr5 | + | 171308789 | 171308819 | 9.5e-05 | 0.637 | ACCTGAAAGGATGCATTTGGTTTGGCTTTTG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 235502678 | 235502708 | 9.5e-05 | 0.637 | AGATTTCAGTTTGAAGTCTACTAACATTTCA |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr6 | + | 83879351 | 83879381 | 9.53e-05 | 0.637 | AGTACATTTTCTGTTCTTTCCCAGTATTTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr1 | + | 155652265 | 155652295 | 9.89e-05 | 0.649 | CTTACATATCATGTGAGAGGTTAATCCCTAG |
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG | MEME-2 | chr3 | + | 108589734 | 108589764 | 9.95e-05 | 0.649 | CTCTGATTTCGTGCGCTTCCTCGTCCTTCAT |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif AGCTCATAGCCTGGAGCTTCTTAACCTTTAG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.