Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
BNNCSMCGGTCCCTDR 16 TGCCCACGGTCCCTAA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG 31 AGCTCATAGCCTGGAGCTTCTTAACCTTTAG
WYACACACACAYACACACACACACACACACA 31 ACACACACACACACACACACACACACACACA
GRRRRKRVKGRGRVNGRRGGRGGWGWDRSAR 31 GGAGGGGGGGAGAGGGAGGGAGGAGAGGGAG
CTTTCTTTGACTCGGAAAGGGA 22 CTTTCTTTGACTCGGAAAGGGA
GGGTAGAGACAT 12 GGGTAGAGACAT
CTAGGGTTRKGGTKAGGKKWRGRGTTAGGGT 31 CTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT
TTTTTYYWTKTTYYCT 16 TTTTTCTTTTTTCCCT
TTARGGRATKTCHTCW 16 TTAAGGGATTTCTTCA
RGGGAYYDTCTSMMAA 16 AGGGATCGTCTGCAAA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.205 C 0.295 G 0.295 T 0.205


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 + 5045651 5045681 7.51e-20 1.05e-14 AGCTCATAGCCTGGAGCTTCTTAACCTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 + 72879131 72879161 7.51e-20 1.05e-14 AGCTCATAGCCTGGAGCTTCTTAACCTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 + 76549108 76549138 7.51e-20 1.05e-14 AGCTCATAGCCTGGAGCTTCTTAACCTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 - 75486479 75486509 7.51e-20 1.05e-14 AGCTCATAGCCTGGAGCTTCTTAACCTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 + 102363657 102363687 3.07e-19 3.44e-14 AGCTCATAGGCTGGAGCTTCTTAACCTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 - 75528299 75528329 7.1e-18 6.64e-13 AGCTCATAGCCTGGAGTTTCTTATCCTCTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 + 102363578 102363608 1.77e-17 1.42e-12 AGCTCATAGCCTGGAGCTTCTTCACCTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 + 6729569 6729599 9.82e-17 6.89e-12 CTCATATAGCCTGGGGCTTCTTAACCTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 - 6707126 6707156 1.39e-09 8.67e-05 TTCTCTTAGCATAGAGCCTCTTAACCGCTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr6 + 125780556 125780586 1e-07 0.00562 AAAATATATCCTGGAAATTCTCATTCTTTAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr15 + 88638678 88638708 1.9e-06 0.0968 AGCTCCAGTCCTGGGGATGTTTATTCTCTGG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 - 159915751 159915781 2.84e-06 0.133 AGCTGATGCCCAGCAGTTTCATGCCCTTCAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr15 - 91056323 91056353 4.42e-06 0.191 ATCACTTATCATGGAGCTTCTGGATGTGTCA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr6 + 26323072 26323102 8.33e-06 0.318 ATCTTCTGGGCCTGCGCTActcaaaatttgg
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr11 + 67805858 67805888 8.5e-06 0.318 AGCACGTGGCCAGGCGCTGCTCGGACTCTGG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 + 34173661 34173691 1.22e-05 0.427 AGAAAATAAACTTTAGCTCCTGAATCTTAAA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 + 18328994 18329024 1.45e-05 0.463 CTCTTATACTTTGAACTTTAGTACCCTCCAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 162024267 162024297 1.52e-05 0.463 CGTTTGTTCCCAGGCGTTTCTTTTCCCTGAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr21 + 32414115 32414145 1.6e-05 0.463 AGCCCTTAGGTCAGAGGTTCTTTGCTTTGAA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 - 42220350 42220380 1.69e-05 0.463 CTCTTATCTCCTGCAGCCCCTGCCGCTCTTG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr21 - 31558521 31558551 1.73e-05 0.463 ATTTTATCGGCTGATTTTTGTCAACTTCGGG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 - 45783533 45783563 1.82e-05 0.463 AGGCAAGAGGCTGGATCTGGGAACCCTTTGG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chrX + 133921671 133921701 1.96e-05 0.477 GCTTTTGAGCCTTGATTTTTTCAACCTTGAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr4 - 90128464 90128494 2.09e-05 0.479 CGCACACAACCTGGGGCCCTTGACGCTCCAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 - 45099547 45099577 2.14e-05 0.479 TGCTGACAGCCAGGCTCTCCTTGCCCTCTCT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr4 + 75630449 75630479 2.34e-05 0.505 CGCCCAGTACCTGGAGCCTGGGAACCTGCAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr11 + 73983647 73983677 2.58e-05 0.517 AGGAGATGGACCGGGCCTGGTTCGCCTTTAA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 228407207 228407237 2.61e-05 0.517 AGTCCGCAGCCTGGGGCATTGGAGCCCTTCG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 + 55338947 55338977 2.73e-05 0.517 TGTTCTGAGTGTGGAGCTTATTATTCTCGGC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 - 35124231 35124261 2.78e-05 0.517 AGGAGATATTTTTGGGTGTTTTGAGTTTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr14 + 59920303 59920333 2.86e-05 0.517 CGTACATCACCGGGAGTCTTTGATCCCCTCT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 - 108692209 108692239 3.1e-05 0.517 CTCAGTTGGGCTGGAGCGTCCTCTTCCTAGG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 185317719 185317749 3.13e-05 0.517 CCCCCCTAGACTGGAGCTGCTCGTCGTGGAC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 - 35764376 35764406 3.14e-05 0.517 CGCTCAGTGCCTGGGGCAGCCCCTCCTCCCT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 - 159915850 159915880 3.31e-05 0.531 AGCACTTTGCATGGGGAATGCTAGCACATAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 - 35578908 35578938 3.66e-05 0.571 CTCCCACCGCCCCTAGCTTCATCGCCTGCAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr9 - 133031113 133031143 4.01e-05 0.581 CGCCCAGAGTCGGCAGCATCTTAGCCACATC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr3 - 11582674 11582704 4.03e-05 0.581 CCTTCCTCTCCTGTGTTTTCTTTAGCCTTAT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr3 - 61895148 61895178 4.29e-05 0.581 GACTCATACGCATGAGTTTCAGAAGCCCTGT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr12 + 6945000 6945030 4.39e-05 0.581 tgcacatagcctgagggtaattttatataat
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr5 - 150758430 150758460 4.39e-05 0.581 TTCTCCCATCCTGAAAGTTCTGTTCCTCTTT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr12 - 6944609 6944639 4.49e-05 0.581 AGCTGAAGCCATAGGCTTTGATAACCTCCTG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr6 - 32786082 32786112 4.68e-05 0.581 GGGATGTTAACTGGGTCATCTTCACCAGTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr22 + 50644312 50644342 4.84e-05 0.581 atcttgcagcctccagcagcatgactcctaa
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr10 - 73496086 73496116 4.95e-05 0.581 ATCCCTTGGCCTCGTCCTGTTTCTCTCCTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 + 79005446 79005476 4.95e-05 0.581 AGCAGACAGCCAAGAGGGTTTGTTTCTCCAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr10 + 100370935 100370965 4.95e-05 0.581 ACTCCACCTCCTGACCCGTCTTAACATTCAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr15 - 88638607 88638637 4.98e-05 0.581 GTCTGATACTCAGTGGTCTCTTATGGGGTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 - 6729651 6729681 5.21e-05 0.581 AGGACAAGGGCCGGACTCTATTTCCCATGAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 7117758 7117788 5.26e-05 0.581 TTCACTCAGCCACCAGCTCCTCCTCCTTTGT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr9 + 86600478 86600508 5.28e-05 0.581 ATCACATTCTCTGTGTATTGTAATCCTAGAT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 - 925481 925511 5.69e-05 0.602 AGCACCTACGCTGGGCCTCGTGGACTCGGAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 - 40123449 40123479 6.03e-05 0.602 ACCCCTAACCCGGGGGTGCCTTAACCTCCTA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr22 - 23893972 23894002 6.28e-05 0.602 ACCTCCTGTCTTTGGGCCACATGTCCTCAAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 + 12610950 12610980 6.33e-05 0.602 TGTGCTTAGCTTGGGGTCTCCTGGCCCCTTG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr12 + 31728965 31728995 6.33e-05 0.602 CTCACAGATCCAGGAGCTGACTGACCCGCCG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chrX - 69616965 69616995 6.33e-05 0.602 ACCTCCTCGACGGGAGCGTCGCCAACTTTTC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 + 39997095 39997125 6.39e-05 0.602 TTCTTAACGGTTCAGTCACCTTAACCGTTAT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 43120177 43120207 6.59e-05 0.602 ccctccgagccaggtgcgggatatcatctcg
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr5 + 67780362 67780392 6.59e-05 0.602 cgcacctggctgggagggtcctacactcacg
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr12 - 57520256 57520286 6.74e-05 0.602 TTATTCTGGGGTGGTGCTTACAAACCCCTAT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr10 - 101354842 101354872 6.74e-05 0.602 ATCTTCTTTAGTGAGGCCTCTTCCCTTCCAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr4 - 104491174 104491204 7.16e-05 0.602 ACCTTATCCCCTGAACACTGCAGACCTTTGG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr9 + 137298096 137298126 7.16e-05 0.602 GTCTTAGAGTGTGTGTCTACCTGCCCCCTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 - 57578534 57578564 7.31e-05 0.602 CCCTCATCCCCTGGGCATTCTTCTGTTCCCA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 + 79811649 79811679 7.48e-05 0.602 CTCCCTTACCCTCGTCCTCCTTCTCTTCAAA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr2 + 231781258 231781288 7.48e-05 0.602 CTCCCCTCAGCTCCCGCTTCTGATCCCTTCT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr11 - 3642263 3642293 7.61e-05 0.602 TACAGTTAGCCTCGAGAACCTTTGCTTTCAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr16 + 30787465 30787495 7.83e-05 0.602 ATCTCAGATTTGGCGGCTGCTGATCCCCTGA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr19 + 45509080 45509110 7.83e-05 0.602 CCCACATCCCCCGCATTTCCTGAACCCCTGC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr5 + 79508864 79508894 7.83e-05 0.602 agcacattgtattggccttcctatcagcagc
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr2 + 86808592 86808622 7.83e-05 0.602 CGAATTCAGTCTGCACCTGACTGACCTCGAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 145979650 145979680 7.83e-05 0.602 AGCTGATTGGTTCCAGCCACTTGACATGCAA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr16 - 370643 370673 8e-05 0.602 CTAACGGTGCCTTGAGCTGCTGCTGCTGTAT
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr10 + 102854451 102854481 8.05e-05 0.602 GCCTGATAGTCCGGGGAGTCGCAGTCTTTCG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr17 - 40123335 40123365 8.39e-05 0.619 ACTTCAGCTCCTCGATCTCCTTTTCCTTGGC
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr7 - 102288062 102288092 8.94e-05 0.626 CAATTCCTGCCGGGAGTTGCCGGTCCCTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 75615213 75615243 8.98e-05 0.626 AGGAAGTAGCCTGCAGGGACTCGGCCGGTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr6 + 32146203 32146233 9.02e-05 0.626 aacagagaagctggatgattttaaattatgg
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr10 + 113563567 113563597 9.02e-05 0.626 CCCAGGAAGTCTCGGCTTTCTTTTTGTTTGG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr9 - 62839431 62839461 9.03e-05 0.626 GATAAATAGCTGGGACTTAATTAAACTAAAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr5 + 171308789 171308819 9.5e-05 0.637 ACCTGAAAGGATGCATTTGGTTTGGCTTTTG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 235502678 235502708 9.5e-05 0.637 AGATTTCAGTTTGAAGTCTACTAACATTTCA
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr6 + 83879351 83879381 9.53e-05 0.637 AGTACATTTTCTGTTCTTTCCCAGTATTTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr1 + 155652265 155652295 9.89e-05 0.649 CTTACATATCATGTGAGAGGTTAATCCCTAG
AGCTCATAGCCTGGAGCTTCTTAACCTTTAG MEME-2 chr3 + 108589734 108589764 9.95e-05 0.649 CTCTGATTTCGTGCGCTTCCTCGTCCTTCAT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif AGCTCATAGCCTGGAGCTTCTTAACCTTTAG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB48.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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