# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB44.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB44.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB44.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB44.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:00 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB44.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:02 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:52:29 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.258 C 0.241 G 0.245 T 0.256


MOTIF HTGCAK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      HTGCAK     MTGCAD        500        282   3.4e-041   1.1e-036
#           CTGCAG     CTGCAG        167         52   1.7e-018   5.5e-014
#           ATGCAG     CTGCAT        161         76   4.0e-010   1.3e-005
#           TTGCAG     CTGCAA        173         86   6.0e-010   1.9e-005
#           ATGCAT     ATGCAT        122         51   2.9e-009   9.1e-005
#           TTGCAT     ATGCAA        139         80   6.7e-006   2.1e-001

letter-probability matrix: alength= 4 w= 6 nsites= 892 E= 1.1e-036
0.257848 0.335202 0.000000 0.406951
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.556054 0.443946


MOTIF RGGAR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       RGGAR      YTCCY        399        275   3.4e-013   1.0e-008
#            GGGAA      TTCCC        136         58   5.1e-010   1.5e-005
#            GGGAG      CTCCC        141         92   2.2e-004   6.6e+000
#            AGGAA      TTCCT        131         93   3.0e-003   9.0e+001
#            AGGAG      CTCCT        143        106   5.1e-003   1.5e+002

letter-probability matrix: alength= 4 w= 5 nsites= 606 E= 1.0e-008
0.490099 0.000000 0.509901 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.478548 0.000000 0.521452 0.000000


MOTIF ATAAAH DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ATAAAH     DTTTAT        160         71   3.8e-011   1.1e-006
#           ATAAAA     TTTTAT         84         36   2.4e-006   6.6e-002
#           ATAAAC     GTTTAT         49         15   7.4e-006   2.0e-001
#           ATAAAT     ATTTAT         52         25   1.0e-003   2.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 196 E= 1.1e-006
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.469388 0.265306 0.000000 0.265306


MOTIF GTAATK DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTAATK     MATTAC         88         30   9.1e-009   2.5e-004
#           GTAATT     AATTAC         50         14   2.0e-006   5.5e-002
#           GTAATG     CATTAC         40         17   1.3e-003   3.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 94 E= 2.5e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.425532 0.574468


# Stopping reason: E-value threshold exceeded
#    Running time: 66.15 seconds