# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:59 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:01 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:56:50 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.149 C 0.353 G 0.356 T 0.142


MOTIF GCGCRCKC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCRCKC   GMGYGCGC        227         71   2.4e-026   6.1e-022
#         GCGCGCGC   GCGCGCGC        112         33   7.7e-013   2.0e-008
#         GCGCACGC   GCGTGCGC         83         23   3.7e-010   9.5e-006
#         GCGCGCTC   GAGCGCGC         74         21   6.0e-009   1.5e-004
#         GCGCACTC   GAGTGCGC         22          6   1.7e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 281 E= 6.1e-022
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.373665 0.000000 0.626335 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.665480 0.334520
0.000000 1.000000 0.000000 0.000000


MOTIF GMGGGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GMGGGA     TCCCKC        209         90   8.7e-016   2.2e-011
#           GCGGGA     TCCCGC        163         59   3.7e-015   9.3e-011
#           GAGGGA     TCCCTC         68         36   6.9e-004   1.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 255 E= 2.2e-011
0.000000 0.000000 1.000000 0.000000
0.290196 0.709804 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGRRA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GGRRA      TYYCC        385        282   1.4e-009   3.5e-005
#            GGGAA      TTCCC        122         71   4.0e-005   9.9e-001
#            GGAGA      TCTCC        167        114   1.9e-004   4.8e+000
#            GGGGA      TCCCC        235        182   8.0e-004   2.0e+001
#            GGAAA      TTTCC         84         53   3.2e-003   7.9e+001

letter-probability matrix: alength= 4 w= 5 nsites= 610 E= 3.5e-005
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.431148 0.000000 0.568852 0.000000
0.303279 0.000000 0.696721 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGAAGW DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGAAGW     WCTTCC         66         15   1.4e-009   3.2e-005
#           GGAAGT     ACTTCC         38          5   7.9e-008   1.8e-003
#           GGAAGA     TCTTCC         30         10   9.4e-004   2.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 69 E= 3.2e-005
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.449275 0.000000 0.000000 0.550725


# Stopping reason: E-value threshold exceeded
#    Running time: 67.81 seconds