******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:194136950-194137450 1.0000 100 chr6:31862725-31863225 1.0000 100 chr5:77210007-77210507 1.0000 100 chr14:93788665-93789165 1.0000 100 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chr19:40055766-40056266 1.0000 100 chr19:34365060-34365560 1.0000 100 chr15:70100535-70101035 1.0000 100 chr12:31324219-31324719 1.0000 100 chr22:23838798-23839298 1.0000 100 chr17:38702298-38702798 1.0000 100 chr6:31660448-31660948 1.0000 100 chr1:155273216-155273716 1.0000 100 chr17:77281351-77281851 1.0000 100 chr15:23039284-23039784 1.0000 100 chr6:30720034-30720534 1.0000 100 chr19:39409482-39409982 1.0000 100 chr3:198080351-198080851 1.0000 100 chr6:30907725-30908225 1.0000 100 chr9:133417822-133418322 1.0000 100 chr6:28838778-28839278 1.0000 100 chr17:46193699-46194199 1.0000 100 chr17:38749017-38749517 1.0000 100 chr10:93566517-93567017 1.0000 100 chr9:101028663-101029163 1.0000 100 chr7:155811911-155812411 1.0000 100 chr16:4416394-4416894 1.0000 100 chr17:36535148-36535648 1.0000 100 chr14:75051181-75051681 1.0000 100 chr6:29553329-29553829 1.0000 100 chr14:93184441-93184941 1.0000 100 chr6:32195682-32196182 1.0000 100 chr5:69332564-69333064 1.0000 100 chr18:79679350-79679850 1.0000 100 chr16:67174069-67174569 1.0000 100 chr1:2525792-2526292 1.0000 100 chr1:155244565-155245065 1.0000 100 chr17:38558114-38558614 1.0000 100 chr1:210328824-210329324 1.0000 100 chr6:28866486-28866986 1.0000 100 chr6:170306553-170307053 1.0000 100 chr17:996471-996971 1.0000 100 chrX:387101-387601 1.0000 100 chr5:88683739-88684239 1.0000 100 chr15:30903628-30904128 1.0000 100 chr1:26620817-26621317 1.0000 100 chr17:36948815-36949315 1.0000 100 chr6:31652482-31652982 1.0000 100 chr17:36486415-36486915 1.0000 100 chr2:27118947-27119447 1.0000 100 chr1:153775470-153775970 1.0000 100 chr8:544129-544629 1.0000 100 chr6:33410125-33410625 1.0000 100 chr17:38798973-38799473 1.0000 100 chr7:76549085-76549585 1.0000 100 chr17:45895289-45895789 1.0000 100 chr19:53537814-53538314 1.0000 100 chr1:243850491-243850991 1.0000 100 chr6:32968177-32968677 1.0000 100 chr6:28923582-28924082 1.0000 100 chr6:31806600-31807100 1.0000 100 chr19:39970702-39971202 1.0000 100 chr6:30326546-30327046 1.0000 100 chr5:69492569-69493069 1.0000 100 chr19:53554133-53554633 1.0000 100 chr6:28923175-28923675 1.0000 100 chr6:169751424-169751924 1.0000 100 chr16:14974953-14975453 1.0000 100 chr22:23894664-23895164 1.0000 100 chr19:34172423-34172923 1.0000 100 chr9:133335946-133336446 1.0000 100 chr17:38296782-38297282 1.0000 100 chr1:26620616-26621116 1.0000 100 chr12:12266855-12267355 1.0000 100 chr6:30647226-30647726 1.0000 100 chr21:32771477-32771977 1.0000 100 chr13:114131598-11413209 1.0000 100 chr16:4425511-4426011 1.0000 100 chr19:36418441-36418941 1.0000 100 chr17:36948609-36949109 1.0000 100 chr19:34359170-34359670 1.0000 100 chr22:24010889-24011389 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.152 C 0.348 G 0.348 T 0.152 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.163 C 0.337 G 0.337 T 0.163 ******************************************************************************** ******************************************************************************** MOTIF RCACRCACACACRCACACACRCACACA MEME-1 width = 27 sites = 37 llr = 779 E-value = 3.8e-133 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACRCACACACRCACACACRCACACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5:8:617:8:716:9:7:615:7:8:8 pos.-specific C :9:8:8:7:817:9:91a17:81a19: probability G 4:114:21213:411:2:21513:1:2 matrix T 111111:2:1:2:::1::11:1:::1: bits 2.6 2.4 2.1 1.8 * * Relative 1.6 * * * * Entropy 1.3 * * * *** * ** * (30.4 bits) 1.0 ** * * * * ****** * ***** 0.8 ******* *********** ******* 0.5 *************************** 0.3 *************************** 0.0 --------------------------- Multilevel ACACACACACACACACACACACACACA consensus G G GT G G G G G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACRCACACACRCACACACRCACACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr22:24010889-24011389 + 6 6.76e-18 cacac acacacacacacacacacacacacaca cgcacacgca chr5:88683739-88684239 - 47 6.76e-18 GCATACACAC ACACACACACACACACACACACACACA CCCCAGGGGC chr1:210310951-210311451 + 15 6.76e-18 ACGAacacac acacacacacacacacacacacacaca cacacacaGT chr2:241881328-241881828 - 68 6.76e-18 ACACAC ACACACACACACACACACACACACACA CGCTGGGCCA chr1:52551477-52551977 + 11 1.33e-17 TCGCGCGCGc acacacacacatacacacacacacaca AAGTCGGCTT chr16:73055441-73055941 + 63 7.90e-17 gcgcgcacac acacacacacacacacacatacacaca cacacacGTC chr9:14277096-14277596 + 45 5.18e-16 GCACGcacac acagacacacacacacacacacacaca caTTTTTGAA chr9:101028663-101029163 + 34 9.94e-14 acaaacacgg acacacacatacacacactcgcgcaca cactcgcaca chr5:88142225-88142725 + 37 1.15e-13 GTGTATacac acacacacacaaacacgcacacacgca cgcgcgcCTG chr1:2230756-2231256 - 8 2.28e-13 AAGCGCGCAC ACACAAACACACACATGCACACACACA TGCACCC chr20:63387366-63387866 + 5 3.90e-13 acgc acacacatatgcacacacaggcacaca catgcacacc chr17:80290128-80290628 - 10 1.39e-12 ACTCACACAC GCACACATACATGCACACGCACACACG TGCGCACAC chr7:191577-192077 + 54 1.57e-12 acatccacac acacacatgcgcacacacacgcacacG CCTGCACTCA chr19:42270593-42271093 - 47 2.27e-12 ATGAGCACAC GCACGCGCACAAACACACACACACGCA CAGAAGCACG chr17:79620046-79620546 + 27 2.27e-12 ACGTGCACAC ATACGCATATGCGCACACACGCACACA CGCACATGCA chr8:142469334-142469834 - 32 2.88e-12 GTGCACACAC ACATTCACACATGCACACATGCACACA CATTCACACA chr19:3666412-3666912 + 51 8.15e-12 acgcaaacat gcacacacacaaacgtgcacacacaca ggcaaacatc chr7:152433625-152434125 - 7 1.02e-11 ACGCGCACAC TCACACGCACGCGCACACTCGCACACA CCCTAC chr19:39157917-39158417 - 65 1.97e-11 CACCCACAC ATGCACATACATGCACGCTCACACACA TGCACACTCA chr2:221570900-221571400 + 64 6.21e-11 acaggcacac acacgcagacatgcacacacacgcaga catgcacaca chr13:114131598-11413209 + 53 1.51e-10 ccgcccacac atggacacacaaacacaagcacacaca aacacgcgcg chr8:1892412-1892912 - 10 1.13e-09 AGCACACCAC ACACACACATGCACACACACGGGTACT CCAGTGTAG chr17:36948609-36949109 + 32 1.73e-09 ccgcgcactc gcacgcgcacgcgcacacgcGCCCATA CGGCTCCAAT chr12:107321068-10732156 - 32 1.73e-09 ACAAGCACAC TTACACACGCACAGACGCGCGCGCACA CAGACTCTCA chr17:38674869-38675369 + 9 3.64e-09 CCCATTCC GCACACAGACACACACACGTGGACCCG GCGCGGCGGC chrX:8730735-8731235 + 74 5.87e-09 CCGGAGCCTC CCACACAAGCGCGCGCGCACACACACA chr3:197664657-197665157 - 5 1.46e-08 GTGTGAACAC GCACGCATGGCTGCACACACGTGCACA GAGA chr19:53554133-53554633 - 14 2.43e-08 ACCGCGACAT GCACGTGTACGCGCACACAGACCCCCA ACGCATGCGT chrX:8730991-8731491 + 50 2.61e-08 CACCCCCAAC ACGCGCATACACGCACCCTGGAACACG ACTTGGCACA chr12:13980658-13981158 + 74 2.80e-08 cgcgccccgc gcgcactcacactcacccccgcgcaca chr2:27118947-27119447 - 39 3.46e-08 AATGTCACAC GCATGTGCACACCCGCACAAGCACACG AGCGCACTCA chr3:46892209-46892709 + 7 1.15e-07 GAACGC GCACGGACGGGCACACACAAGTGCACG CGCCGGCCAC chr1:26529903-26530403 - 34 1.57e-07 GGCGGAACTG TCCCTCGCACACGCACACCCGGGCATA GGGGGGTGGA chr19:34359170-34359670 + 70 1.68e-07 ACCCGGACGT GCTGGCCCACACGCACACGCGTGCGCA TTAC chr19:53537814-53538314 - 9 2.28e-07 AGCCCGACAC GCATGTGCACACAGACCCCTACACGTA TGTGCACG chr7:76549085-76549585 - 4 2.89e-07 TGGCGCGCAT GTGCGAGCACGCACGCGCGAACACGCA CGC chr4:17781145-17781645 - 12 3.07e-07 AAACCCACAC GCTCGCACGCCCGCGCGCGCACGCACG TGCACACGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACRCACACACRCACACACRCACACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:24010889-24011389 6.8e-18 5_[+1]_68 chr5:88683739-88684239 6.8e-18 46_[-1]_27 chr1:210310951-210311451 6.8e-18 14_[+1]_59 chr2:241881328-241881828 6.8e-18 67_[-1]_6 chr1:52551477-52551977 1.3e-17 10_[+1]_63 chr16:73055441-73055941 7.9e-17 62_[+1]_11 chr9:14277096-14277596 5.2e-16 44_[+1]_29 chr9:101028663-101029163 9.9e-14 33_[+1]_40 chr5:88142225-88142725 1.2e-13 36_[+1]_37 chr1:2230756-2231256 2.3e-13 7_[-1]_66 chr20:63387366-63387866 3.9e-13 4_[+1]_69 chr17:80290128-80290628 1.4e-12 9_[-1]_64 chr7:191577-192077 1.6e-12 53_[+1]_20 chr19:42270593-42271093 2.3e-12 46_[-1]_27 chr17:79620046-79620546 2.3e-12 26_[+1]_47 chr8:142469334-142469834 2.9e-12 31_[-1]_42 chr19:3666412-3666912 8.1e-12 50_[+1]_23 chr7:152433625-152434125 1e-11 6_[-1]_67 chr19:39157917-39158417 2e-11 64_[-1]_9 chr2:221570900-221571400 6.2e-11 63_[+1]_10 chr13:114131598-11413209 1.5e-10 52_[+1]_21 chr8:1892412-1892912 1.1e-09 9_[-1]_64 chr17:36948609-36949109 1.7e-09 31_[+1]_42 chr12:107321068-10732156 1.7e-09 31_[-1]_42 chr17:38674869-38675369 3.6e-09 8_[+1]_65 chrX:8730735-8731235 5.9e-09 73_[+1] chr3:197664657-197665157 1.5e-08 4_[-1]_69 chr19:53554133-53554633 2.4e-08 13_[-1]_60 chrX:8730991-8731491 2.6e-08 49_[+1]_24 chr12:13980658-13981158 2.8e-08 73_[+1] chr2:27118947-27119447 3.5e-08 38_[-1]_35 chr3:46892209-46892709 1.1e-07 6_[+1]_67 chr1:26529903-26530403 1.6e-07 33_[-1]_40 chr19:34359170-34359670 1.7e-07 69_[+1]_4 chr19:53537814-53538314 2.3e-07 8_[-1]_65 chr7:76549085-76549585 2.9e-07 3_[-1]_70 chr4:17781145-17781645 3.1e-07 11_[-1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACRCACACACRCACACACRCACACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACRCACACACRCACACACRCACACA width=27 seqs=37 chr22:24010889-24011389 ( 6) ACACACACACACACACACACACACACA 1 chr5:88683739-88684239 ( 47) ACACACACACACACACACACACACACA 1 chr1:210310951-210311451 ( 15) ACACACACACACACACACACACACACA 1 chr2:241881328-241881828 ( 68) ACACACACACACACACACACACACACA 1 chr1:52551477-52551977 ( 11) ACACACACACATACACACACACACACA 1 chr16:73055441-73055941 ( 63) ACACACACACACACACACATACACACA 1 chr9:14277096-14277596 ( 45) ACAGACACACACACACACACACACACA 1 chr9:101028663-101029163 ( 34) ACACACACATACACACACTCGCGCACA 1 chr5:88142225-88142725 ( 37) ACACACACACAAACACGCACACACGCA 1 chr1:2230756-2231256 ( 8) ACACAAACACACACATGCACACACACA 1 chr20:63387366-63387866 ( 5) ACACACATATGCACACACAGGCACACA 1 chr17:80290128-80290628 ( 10) GCACACATACATGCACACGCACACACG 1 chr7:191577-192077 ( 54) ACACACATGCGCACACACACGCACACG 1 chr19:42270593-42271093 ( 47) GCACGCGCACAAACACACACACACGCA 1 chr17:79620046-79620546 ( 27) ATACGCATATGCGCACACACGCACACA 1 chr8:142469334-142469834 ( 32) ACATTCACACATGCACACATGCACACA 1 chr19:3666412-3666912 ( 51) GCACACACACAAACGTGCACACACACA 1 chr7:152433625-152434125 ( 7) TCACACGCACGCGCACACTCGCACACA 1 chr19:39157917-39158417 ( 65) ATGCACATACATGCACGCTCACACACA 1 chr2:221570900-221571400 ( 64) ACACGCAGACATGCACACACACGCAGA 1 chr13:114131598-11413209 ( 53) ATGGACACACAAACACAAGCACACACA 1 chr8:1892412-1892912 ( 10) ACACACACATGCACACACACGGGTACT 1 chr17:36948609-36949109 ( 32) GCACGCGCACGCGCACACGCGCCCATA 1 chr12:107321068-10732156 ( 32) TTACACACGCACAGACGCGCGCGCACA 1 chr17:38674869-38675369 ( 9) GCACACAGACACACACACGTGGACCCG 1 chrX:8730735-8731235 ( 74) CCACACAAGCGCGCGCGCACACACACA 1 chr3:197664657-197665157 ( 5) GCACGCATGGCTGCACACACGTGCACA 1 chr19:53554133-53554633 ( 14) GCACGTGTACGCGCACACAGACCCCCA 1 chrX:8730991-8731491 ( 50) ACGCGCATACACGCACCCTGGAACACG 1 chr12:13980658-13981158 ( 74) GCGCACTCACACTCACCCCCGCGCACA 1 chr2:27118947-27119447 ( 39) GCATGTGCACACCCGCACAAGCACACG 1 chr3:46892209-46892709 ( 7) GCACGGACGGGCACACACAAGTGCACG 1 chr1:26529903-26530403 ( 34) TCCCTCGCACACGCACACCCGGGCATA 1 chr19:34359170-34359670 ( 70) GCTGGCCCACACGCACACGCGTGCGCA 1 chr19:53537814-53538314 ( 9) GCATGTGCACACAGACCCCTACACGTA 1 chr7:76549085-76549585 ( 4) GTGCGAGCACGCACGCGCGAACACGCA 1 chr4:17781145-17781645 ( 12) GCTCGCACGCCCGCGCGCGCACGCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACRCACACACRCACACACRCACACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 12.0319 E= 3.8e-133 166 -364 17 -101 -1185 136 -1185 -27 227 -364 -132 -159 -1185 131 -205 -101 187 -1185 6 -159 -159 131 -364 -101 216 -364 -64 -259 -259 106 -264 41 236 -1185 -106 -1185 -1185 131 -264 -59 205 -264 -32 -1185 -59 111 -1185 -1 180 -364 17 -259 -1185 149 -264 -1185 241 -1185 -132 -1185 -1185 149 -1185 -159 211 -205 -64 -1185 -259 153 -1185 -1185 187 -205 -64 -59 -101 111 -205 -59 173 -1185 45 -1185 -259 127 -205 -101 205 -264 -32 -1185 -1185 153 -1185 -259 232 -264 -132 -1185 -1185 140 -364 -101 227 -1185 -83 -259 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACRCACACACRCACACACRCACACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 37 E= 3.8e-133 0.513514 0.027027 0.378378 0.081081 0.000000 0.864865 0.000000 0.135135 0.783784 0.027027 0.135135 0.054054 0.000000 0.837838 0.081081 0.081081 0.594595 0.000000 0.351351 0.054054 0.054054 0.837838 0.027027 0.081081 0.729730 0.027027 0.216216 0.027027 0.027027 0.702703 0.054054 0.216216 0.837838 0.000000 0.162162 0.000000 0.000000 0.837838 0.054054 0.108108 0.675676 0.054054 0.270270 0.000000 0.108108 0.729730 0.000000 0.162162 0.567568 0.027027 0.378378 0.027027 0.000000 0.945946 0.054054 0.000000 0.864865 0.000000 0.135135 0.000000 0.000000 0.945946 0.000000 0.054054 0.702703 0.081081 0.216216 0.000000 0.027027 0.972973 0.000000 0.000000 0.594595 0.081081 0.216216 0.108108 0.081081 0.729730 0.081081 0.108108 0.540541 0.000000 0.459459 0.000000 0.027027 0.810811 0.081081 0.081081 0.675676 0.054054 0.270270 0.000000 0.000000 0.972973 0.000000 0.027027 0.810811 0.054054 0.135135 0.000000 0.000000 0.891892 0.027027 0.081081 0.783784 0.000000 0.189189 0.027027 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACRCACACACRCACACACRCACACA MEME-1 regular expression -------------------------------------------------------------------------------- [AG]CAC[AG]C[AG][CT]AC[AG]C[AG]CAC[AG]C[AG]C[AG]C[AG]CACA -------------------------------------------------------------------------------- Time 375.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 width = 43 sites = 12 llr = 640 E-value = 6.5e-144 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::91:::::::2::::::59:::a:::aa::::::4:::: pos.-specific C 9aa1::8aaa:::9:a::aaa::::::::a::::aa:9:aaa: probability G ::::91::::::a:8::::::51a:a:aa::::a::::6:::: matrix T 1::91:1:::aa:11:aa::::::a:::::::a:::a1::::a bits 2.6 ** ** * * *** * * 2.4 ** ** * * *** * * 2.1 * * ** ** * * * *** * * 1.8 * * ** ** * * * *** * * Relative 1.6 *** * ****** ****** *************** **** Entropy 1.3 ****** ******* ****** **************** **** (76.9 bits) 1.0 ************** **************************** 0.8 ******************************************* 0.5 ******************************************* 0.3 ******************************************* 0.0 ------------------------------------------- Multilevel CCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCGCCCT consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr13:19109302-19109802 + 2 1.34e-25 t ccctgaccccttgcgcttcccaagtgaggcaatgcctcgccct gtttcggctt chr7:93591296-93591796 + 56 2.25e-25 aaagggaact ccctgaccccttgcgcttcccgagtgaggcaatgcctcaccct gc chr8:91197435-91197935 + 16 2.25e-25 aaagggaact ccctgaccccttgcgcttcccgagtgaggcaatgcctcaccct gcttcggctc chr5:90668180-90668680 + 38 2.25e-25 aaagggaact ccctgaccccttgcgcttcccgagtgaggcaatgcctcaccct gcttcggctc chr3:107697798-107698298 + 6 4.33e-25 gaact ccctgaccccttgcgcttcccgagtgaggcaatgcctcgccct gctttggctc chr4:120256340-120256840 + 21 4.77e-25 aaagggaact ccctgaccccttgcacttcccaagtgaggcaatgcctcgccct gcttctgctc chr12:80149611-80150111 + 50 5.42e-25 aaagggagct ccctgaccccttgcacttcccgagtgaggcaatgcctcaccct gcttcggc chr4:84298708-84299208 - 47 6.68e-25 AAAGGGAACT CCCTGACCCCTTGTGCTTCCCAAGTGAGGCAATGCCTCACCCT GCTTGGGCTC chr11:102747042-10274754 + 4 8.90e-25 act ccctgatcccttgcgcttcccaagtgaggcaatgcctcgccct gcttcggctc chr3:17860949-17861449 + 26 1.07e-24 aaagggaact ccctgaccccttgcgcttcccaagtgaggcaatgccttgccct gcttcggctc chr13:39006437-39006937 + 21 3.49e-24 aaagggaact ccctgaccccttgcgcttcccaggtgaggcaatgcctcgccct gcttcagctc chr18:77421553-77422053 + 30 1.53e-21 gaaagggaac tccctgacccttgctcttcccgagtgaggcaatgcctcgccct gcttcggctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:19109302-19109802 1.3e-25 1_[+2]_56 chr7:93591296-93591796 2.2e-25 55_[+2]_2 chr8:91197435-91197935 2.2e-25 15_[+2]_42 chr5:90668180-90668680 2.2e-25 37_[+2]_20 chr3:107697798-107698298 4.3e-25 5_[+2]_52 chr4:120256340-120256840 4.8e-25 20_[+2]_37 chr12:80149611-80150111 5.4e-25 49_[+2]_8 chr4:84298708-84299208 6.7e-25 46_[-2]_11 chr11:102747042-10274754 8.9e-25 3_[+2]_54 chr3:17860949-17861449 1.1e-24 25_[+2]_32 chr13:39006437-39006937 3.5e-24 20_[+2]_37 chr18:77421553-77422053 1.5e-21 29_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT width=43 seqs=12 chr13:19109302-19109802 ( 2) CCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCGCCCT 1 chr7:93591296-93591796 ( 56) CCCTGACCCCTTGCGCTTCCCGAGTGAGGCAATGCCTCACCCT 1 chr8:91197435-91197935 ( 16) CCCTGACCCCTTGCGCTTCCCGAGTGAGGCAATGCCTCACCCT 1 chr5:90668180-90668680 ( 38) CCCTGACCCCTTGCGCTTCCCGAGTGAGGCAATGCCTCACCCT 1 chr3:107697798-107698298 ( 6) CCCTGACCCCTTGCGCTTCCCGAGTGAGGCAATGCCTCGCCCT 1 chr4:120256340-120256840 ( 21) CCCTGACCCCTTGCACTTCCCAAGTGAGGCAATGCCTCGCCCT 1 chr12:80149611-80150111 ( 50) CCCTGACCCCTTGCACTTCCCGAGTGAGGCAATGCCTCACCCT 1 chr4:84298708-84299208 ( 47) CCCTGACCCCTTGTGCTTCCCAAGTGAGGCAATGCCTCACCCT 1 chr11:102747042-10274754 ( 4) CCCTGATCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCGCCCT 1 chr3:17860949-17861449 ( 26) CCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTTGCCCT 1 chr13:39006437-39006937 ( 21) CCCTGACCCCTTGCGCTTCCCAGGTGAGGCAATGCCTCGCCCT 1 chr18:77421553-77422053 ( 30) TCCCTGACCCTTGCTCTTCCCGAGTGAGGCAATGCCTCGCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 11.1602 E= 6.5e-144 -1023 144 -1023 -96 -1023 157 -1023 -1023 -1023 157 -1023 -1023 -1023 -201 -1023 249 -1023 -1023 144 -96 249 -1023 -201 -1023 -96 130 -1023 -96 -1023 157 -1023 -1023 -1023 157 -1023 -1023 -1023 157 -1023 -1023 -1023 -1023 -1023 262 -1023 -1023 -1023 262 -1023 -1023 157 -1023 -1023 144 -1023 -96 3 -1023 115 -96 -1023 157 -1023 -1023 -1023 -1023 -1023 262 -1023 -1023 -1023 262 -1023 157 -1023 -1023 -1023 157 -1023 -1023 -1023 157 -1023 -1023 162 -1023 57 -1023 249 -1023 -201 -1023 -1023 -1023 157 -1023 -1023 -1023 -1023 262 -1023 -1023 157 -1023 262 -1023 -1023 -1023 -1023 -1023 157 -1023 -1023 -1023 157 -1023 -1023 157 -1023 -1023 262 -1023 -1023 -1023 262 -1023 -1023 -1023 -1023 -1023 -1023 262 -1023 -1023 157 -1023 -1023 157 -1023 -1023 -1023 157 -1023 -1023 -1023 -1023 -1023 262 -1023 144 -1023 -96 136 -1023 79 -1023 -1023 157 -1023 -1023 -1023 157 -1023 -1023 -1023 157 -1023 -1023 -1023 -1023 -1023 262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 12 E= 6.5e-144 0.000000 0.916667 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.916667 0.083333 0.916667 0.000000 0.083333 0.000000 0.083333 0.833333 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.166667 0.000000 0.750000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.916667 0.000000 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.416667 0.000000 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGACCCCTTGCGCTTCCCRAGTGAGGCAATGCCTCRCCCT MEME-2 regular expression -------------------------------------------------------------------------------- CCCTGACCCCTTGCGCTTCCC[AG]AGTGAGGCAATGCCTC[GA]CCCT -------------------------------------------------------------------------------- Time 680.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 width = 31 sites = 11 llr = 372 E-value = 4.7e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::2:1::::2:a::::::1:1:a:1:a:: pos.-specific C 81:8:1918:6:a:a::::a:8:a:a99:a: probability G ::1179::1a:8:::aa:a:9:9::::1::: matrix T 29911::91:4::::::a:::2::::::::a bits 2.6 * * * * * 2.4 * * * * * 2.1 ** * * * * * * 1.8 ** * * * * * * Relative 1.6 ** * * ******** *** *** Entropy 1.3 ** ** * ********* ***** *** (48.8 bits) 1.0 *** *** ********************** 0.8 ******************************* 0.5 ******************************* 0.3 ******************************* 0.0 ------------------------------- Multilevel CTTCGGCTCGCGCACGGTGCGCGCACCCACT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr3:17860949-17861449 + 70 1.01e-17 ccttgccctg cttcggctcgcgcacggtgcgcgcacccact chr8:91197435-91197935 + 60 1.01e-17 cctcaccctg cttcggctcgcgcacggtgcgcgcacccact gaccggcgcc chr10:35858585-35859085 - 29 1.17e-17 CCTCGCCCTG CTTCAGCTCGTGCACGGTGCGCGCACCCACT GGCCTGTGCC chr11:102747042-10274754 + 48 2.96e-17 cctcgccctg cttcggctcgcacacggtgcgcgcacccact gacctgggcc chr13:39006437-39006937 + 65 3.35e-17 cctcgccctg cttcagctcgtgcacggtgcgtgcacccact ggcct chr3:107697798-107698298 + 50 3.90e-17 cctcgccctg ctttggctcgtgcacggtgcgcgcacccact gacctgcgcc chr13:19109302-19109802 + 46 1.48e-16 cctcgccctg tttcggcttgcgcacggtgcgcgcacccact ggcctgcgcc chr4:120256340-120256840 + 65 3.24e-16 cctcgccctg cttctgctcgcgcacggtgcacgcacccact gacct chr14:30690442-30690942 + 20 4.22e-16 cctcgccctg cttcggctcgcgcacggtgcgcacacacact ggcctgcgcc chr4:84298708-84299208 - 15 2.35e-15 CCTCACCCTG CTTGGGCTCGCACACGGTGCGCGCACCGACT GACCTGCGCC chr17:60887067-60887567 + 36 1.01e-12 ctgcttcggc tcgcgcacggtgcacggtgcgtgcacccact gacctgcgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:17860949-17861449 1e-17 69_[+3] chr8:91197435-91197935 1e-17 59_[+3]_10 chr10:35858585-35859085 1.2e-17 28_[-3]_41 chr11:102747042-10274754 3e-17 47_[+3]_22 chr13:39006437-39006937 3.4e-17 64_[+3]_5 chr3:107697798-107698298 3.9e-17 49_[+3]_20 chr13:19109302-19109802 1.5e-16 45_[+3]_24 chr4:120256340-120256840 3.2e-16 64_[+3]_5 chr14:30690442-30690942 4.2e-16 19_[+3]_50 chr4:84298708-84299208 2.3e-15 14_[-3]_55 chr17:60887067-60887567 1e-12 35_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTCGGCTCGYGCACGGTGCGCGCACCCACT width=31 seqs=11 chr3:17860949-17861449 ( 70) CTTCGGCTCGCGCACGGTGCGCGCACCCACT 1 chr8:91197435-91197935 ( 60) CTTCGGCTCGCGCACGGTGCGCGCACCCACT 1 chr10:35858585-35859085 ( 29) CTTCAGCTCGTGCACGGTGCGCGCACCCACT 1 chr11:102747042-10274754 ( 48) CTTCGGCTCGCACACGGTGCGCGCACCCACT 1 chr13:39006437-39006937 ( 65) CTTCAGCTCGTGCACGGTGCGTGCACCCACT 1 chr3:107697798-107698298 ( 50) CTTTGGCTCGTGCACGGTGCGCGCACCCACT 1 chr13:19109302-19109802 ( 46) TTTCGGCTTGCGCACGGTGCGCGCACCCACT 1 chr4:120256340-120256840 ( 65) CTTCTGCTCGCGCACGGTGCACGCACCCACT 1 chr14:30690442-30690942 ( 20) CTTCGGCTCGCGCACGGTGCGCACACACACT 1 chr4:84298708-84299208 ( 15) CTTGGGCTCGCACACGGTGCGCGCACCGACT 1 chr17:60887067-60887567 ( 36) TCGCGCACGGTGCACGGTGCGTGCACCCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.2535 E= 4.7e-057 -1010 128 -1010 16 -1010 -189 -1010 248 -1010 -1010 -189 248 -1010 128 -189 -84 16 -1010 111 -84 -1010 -189 143 -1010 -84 143 -1010 -1010 -1010 -189 -1010 248 -1010 128 -189 -84 -1010 -1010 157 -1010 -1010 92 -1010 116 16 -1010 128 -1010 -1010 157 -1010 -1010 262 -1010 -1010 -1010 -1010 157 -1010 -1010 -1010 -1010 157 -1010 -1010 -1010 157 -1010 -1010 -1010 -1010 262 -1010 -1010 157 -1010 -1010 157 -1010 -1010 -84 -1010 143 -1010 -1010 128 -1010 16 -84 -1010 143 -1010 -1010 157 -1010 -1010 262 -1010 -1010 -1010 -1010 157 -1010 -1010 -84 143 -1010 -1010 -1010 143 -189 -1010 262 -1010 -1010 -1010 -1010 157 -1010 -1010 -1010 -1010 -1010 262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 11 E= 4.7e-057 0.000000 0.818182 0.000000 0.181818 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.090909 0.909091 0.000000 0.818182 0.090909 0.090909 0.181818 0.000000 0.727273 0.090909 0.000000 0.090909 0.909091 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.818182 0.090909 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.181818 0.000000 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.818182 0.000000 0.181818 0.090909 0.000000 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGGCTCGYGCACGGTGCGCGCACCCACT MEME-3 regular expression -------------------------------------------------------------------------------- CTTCGGCTCG[CT]GCACGGTGCGCGCACCCACT -------------------------------------------------------------------------------- Time 986.94 secs. ******************************************************************************** ******************************************************************************** MOTIF RCRCRCRCRCGCRCGYGCACAC MEME-4 width = 22 sites = 46 llr = 619 E-value = 4.2e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCRCRCRCRCGCRCGYGCACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3142314:713:6:3:217:8: pos.-specific C 2616:819:8:6:9:519:a:a probability G 423:61513:724:717:2:2: matrix T 11221::::1:2:1:4::1::: bits 2.6 2.4 2.1 1.8 Relative 1.6 ** Entropy 1.3 * * ***** (19.4 bits) 1.0 ** * *** ***** 0.8 * **** *** ***** 0.5 ******** ********** 0.3 ********************** 0.0 ---------------------- Multilevel GCACGCGCACGCACGCGCACAC consensus A GTA A G A G ATA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCRCRCRCGCRCGYGCACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr17:79620046-79620546 + 5 1.37e-12 acgc acatgcacacaCACGTGCACAC ATACGCATAT chr8:142469334-142469834 - 61 2.34e-11 GCACGTGCAT ACACACACATGCACGTGCACAC ACACATTCAC chr17:80290128-80290628 - 57 6.23e-11 ACGCACACAC ACAAGCACACGTACACGCACAC ACGTGCACGC chr22:24010889-24011389 + 50 1.53e-10 gcacacgcgc acgcgcgcacacacgcgcacac acgcgcgcac chr7:191577-192077 + 32 1.53e-10 acaggcatac acacgcacacgcacatccacac acacacatgc chr12:107321068-10732156 - 7 3.46e-10 GCGCACACAG ACTCTCACACGCACATGCACAC CCTTGG chr5:88683739-88684239 - 74 4.20e-10 TACAC ACACACACGCGCGCATACACAC ACACACACAC chr13:114131598-11413209 + 22 7.36e-10 acatgcaccc acaaacgcacgcgcacacacac cgcccacaca chr9:14277096-14277596 + 23 1.75e-09 ATGTGCACCC GCGCACACACGTGCACGcacac acagacacac chr2:221570900-221571400 + 42 2.85e-09 AGTTGCACGC GCGCGcacacacacaggcacac acacgcagac chr7:141702140-141702640 - 17 3.33e-09 GCCGCACGCG TCCCACACACGGACGTGCACAC GGGCGCCTCC chr19:39157917-39158417 - 30 7.08e-09 ACACTCACAA ACATGCACACATGTGCACACAC GCACGCTCAC chr19:3666412-3666912 + 15 7.08e-09 aggcaaatga acacaggcaaacacgtgcacac atgcacgcaa chr20:63387366-63387866 + 75 7.08e-09 gcatgtgcac gcccacacacatgcatacacac atgc chr16:73055441-73055941 + 41 2.43e-08 AGACGTAcgc gcgcgcgcgcgcgcgcgcacac acacacacac chr7:152433625-152434125 - 34 3.13e-08 GGGCGTGCTT GTGCACGCGCACACGCGCACAC TCACACGCAC chr9:101028663-101029163 + 68 4.02e-08 acacactcgc acaaacacacactcgtacacGC CCGCGCCGCT chr3:197664657-197665157 - 49 4.54e-08 CGCCACACCC AGGCACGGACGCACGCACACAC TCCACACGTG chr19:53554133-53554633 - 77 8.18e-08 CC CGACACGCATGTGCGTGCACAC AGATCCTGAC chr17:45317245-45317745 - 3 2.17e-07 CAGTGGCAGG GAGTGCCCACGCATGCGCACAC TC chr12:13980658-13981158 + 28 2.17e-07 CTTGGAAGGG GCACACTGAcgcgcgcacacac gcccccgacg chr2:27118947-27119447 - 76 2.66e-07 TAC ACATGCTCACACTCACGCTCAC AATGTCACAC chr3:46892209-46892709 + 70 2.94e-07 ACTCGCGCGC GCACGCACAGGGACGCGCACGC GGCTCCGCT chr6:31652482-31652982 - 38 3.59e-07 TAGCGCTCAA GCGCGCGCACAGACGTGAACGC CGCCAGAGGG chr7:155811911-155812411 - 79 5.25e-07 . GAGAGAGCGCACACGCACACAC CCGCCGCGCG chr7:50782767-50783267 + 78 7.57e-07 CCCCCCCGCC TGATGGGCAAGGACGCGCACAC T chr19:40055766-40056266 + 48 8.27e-07 CCCCATCCTT TGATGCCCGCGCACACGCACGC CTAAGGATCT chr19:40090485-40090985 + 45 8.27e-07 CCCCCTCCTC TGATACCCGCGCACACACACGC CTGGGGATCC chr8:1892412-1892912 - 50 8.27e-07 ATATGTGCAA GATAACACACACGTGCGCGCAC GGAAGCACAC chr19:42270593-42271093 - 24 1.27e-06 ACACACGCAC AGAAGCACGCACACGTCATCAC ACAGTGGGAC chr7:101172144-101172644 - 12 1.50e-06 GTGGACAGCC GCGCGCGCCCGCGCGTGCTCAC GCTGTGCACG chr19:53537814-53538314 - 76 1.63e-06 GGC CAGCGCGCATGCGCACGCGCAC CCAGCGGCCG chr7:155810247-155810747 + 68 1.63e-06 CTGCTGTCTG GCACTGGCGCGCGCGTCCACAC TCGCGGTCCA chr16:4425511-4426011 - 68 1.92e-06 GAGGCGCATG CGTCGCGCACGCGCAGGCGCAC CGTACGCGTA chr14:94080601-94081101 + 62 1.92e-06 TCTCGCTTTG TCTCAGGCACGAACGCGCGCAC GAAACCGAGA chr17:38296782-38297282 - 48 2.07e-06 AATGTGAGCA GCGAGGACGCGCACGTGCTCGC GGGAGTGGGG chr12:31326027-31326527 + 15 4.38e-06 AATCGAACTT ATTTGCATACGGGCGCGCGCAC GTTGCGGGCT chr11:57459706-57460206 + 16 4.38e-06 ACTTTCAGCG GCTCACCCGTGTGCACACTCAC GTGCCCCCCC chr1:155273216-155273716 + 67 5.04e-06 gccgccgccg ccgTGAGCGAGCACGTACGCAC GGACCGACGT chr2:36356596-36357096 + 77 5.79e-06 GATCGCCCCT GTCCCCGCGCAGACGCGCACAC GT chr2:241881328-241881828 - 22 5.79e-06 CCTACCCAGC CCCCTCACACGTATGGGCACGC CCCTGCTCAG chr10:74825761-74826261 - 73 6.20e-06 GCGGGC GGGCGCGCGCGGGCGGGCACGC GAAGTTAAAA chr9:4666271-4666771 + 61 7.56e-06 CGCGAGGCCC CAGCGCAGACGCGCGCCCTCAC GGTCGCTGTT chr19:50328429-50328929 + 6 7.56e-06 GTAGT AGTTGAGCACGTACGCGAAGAC TCCCGGGTGC chr19:34359170-34359670 + 21 1.04e-05 CAGCGCCCGA CCCTGCGCGGGGACATGCGCAC AAGCGCGCGT chr6:31834299-31834799 - 58 1.18e-05 CTGGGACTCT TCCCGCGCGCGCGCGGGCGCGC GCAGCTGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCRCRCRCGCRCGYGCACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:79620046-79620546 1.4e-12 4_[+4]_74 chr8:142469334-142469834 2.3e-11 60_[-4]_18 chr17:80290128-80290628 6.2e-11 56_[-4]_22 chr22:24010889-24011389 1.5e-10 49_[+4]_29 chr7:191577-192077 1.5e-10 31_[+4]_47 chr12:107321068-10732156 3.5e-10 6_[-4]_72 chr5:88683739-88684239 4.2e-10 73_[-4]_5 chr13:114131598-11413209 7.4e-10 21_[+4]_57 chr9:14277096-14277596 1.7e-09 22_[+4]_56 chr2:221570900-221571400 2.8e-09 41_[+4]_37 chr7:141702140-141702640 3.3e-09 16_[-4]_62 chr19:39157917-39158417 7.1e-09 29_[-4]_49 chr19:3666412-3666912 7.1e-09 14_[+4]_64 chr20:63387366-63387866 7.1e-09 74_[+4]_4 chr16:73055441-73055941 2.4e-08 40_[+4]_38 chr7:152433625-152434125 3.1e-08 33_[-4]_45 chr9:101028663-101029163 4e-08 67_[+4]_11 chr3:197664657-197665157 4.5e-08 48_[-4]_30 chr19:53554133-53554633 8.2e-08 76_[-4]_2 chr17:45317245-45317745 2.2e-07 2_[-4]_76 chr12:13980658-13981158 2.2e-07 27_[+4]_51 chr2:27118947-27119447 2.7e-07 75_[-4]_3 chr3:46892209-46892709 2.9e-07 69_[+4]_9 chr6:31652482-31652982 3.6e-07 37_[-4]_41 chr7:155811911-155812411 5.3e-07 78_[-4] chr7:50782767-50783267 7.6e-07 77_[+4]_1 chr19:40055766-40056266 8.3e-07 47_[+4]_31 chr19:40090485-40090985 8.3e-07 44_[+4]_34 chr8:1892412-1892912 8.3e-07 49_[-4]_29 chr19:42270593-42271093 1.3e-06 23_[-4]_55 chr7:101172144-101172644 1.5e-06 11_[-4]_67 chr19:53537814-53538314 1.6e-06 75_[-4]_3 chr7:155810247-155810747 1.6e-06 67_[+4]_11 chr16:4425511-4426011 1.9e-06 67_[-4]_11 chr14:94080601-94081101 1.9e-06 61_[+4]_17 chr17:38296782-38297282 2.1e-06 47_[-4]_31 chr12:31326027-31326527 4.4e-06 14_[+4]_64 chr11:57459706-57460206 4.4e-06 15_[+4]_63 chr1:155273216-155273716 5e-06 66_[+4]_12 chr2:36356596-36357096 5.8e-06 76_[+4]_2 chr2:241881328-241881828 5.8e-06 21_[-4]_57 chr10:74825761-74826261 6.2e-06 72_[-4]_6 chr9:4666271-4666771 7.6e-06 60_[+4]_18 chr19:50328429-50328929 7.6e-06 5_[+4]_73 chr19:34359170-34359670 1e-05 20_[+4]_58 chr6:31834299-31834799 1.2e-05 57_[-4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCRCRCRCGCRCGYGCACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCRCRCRCRCGCRCGYGCACAC width=22 seqs=46 chr17:79620046-79620546 ( 5) ACATGCACACACACGTGCACAC 1 chr8:142469334-142469834 ( 61) ACACACACATGCACGTGCACAC 1 chr17:80290128-80290628 ( 57) ACAAGCACACGTACACGCACAC 1 chr22:24010889-24011389 ( 50) ACGCGCGCACACACGCGCACAC 1 chr7:191577-192077 ( 32) ACACGCACACGCACATCCACAC 1 chr12:107321068-10732156 ( 7) ACTCTCACACGCACATGCACAC 1 chr5:88683739-88684239 ( 74) ACACACACGCGCGCATACACAC 1 chr13:114131598-11413209 ( 22) ACAAACGCACGCGCACACACAC 1 chr9:14277096-14277596 ( 23) GCGCACACACGTGCACGCACAC 1 chr2:221570900-221571400 ( 42) GCGCGCACACACACAGGCACAC 1 chr7:141702140-141702640 ( 17) TCCCACACACGGACGTGCACAC 1 chr19:39157917-39158417 ( 30) ACATGCACACATGTGCACACAC 1 chr19:3666412-3666912 ( 15) ACACAGGCAAACACGTGCACAC 1 chr20:63387366-63387866 ( 75) GCCCACACACATGCATACACAC 1 chr16:73055441-73055941 ( 41) GCGCGCGCGCGCGCGCGCACAC 1 chr7:152433625-152434125 ( 34) GTGCACGCGCACACGCGCACAC 1 chr9:101028663-101029163 ( 68) ACAAACACACACTCGTACACGC 1 chr3:197664657-197665157 ( 49) AGGCACGGACGCACGCACACAC 1 chr19:53554133-53554633 ( 77) CGACACGCATGTGCGTGCACAC 1 chr17:45317245-45317745 ( 3) GAGTGCCCACGCATGCGCACAC 1 chr12:13980658-13981158 ( 28) GCACACTGACGCGCGCACACAC 1 chr2:27118947-27119447 ( 76) ACATGCTCACACTCACGCTCAC 1 chr3:46892209-46892709 ( 70) GCACGCACAGGGACGCGCACGC 1 chr6:31652482-31652982 ( 38) GCGCGCGCACAGACGTGAACGC 1 chr7:155811911-155812411 ( 79) GAGAGAGCGCACACGCACACAC 1 chr7:50782767-50783267 ( 78) TGATGGGCAAGGACGCGCACAC 1 chr19:40055766-40056266 ( 48) TGATGCCCGCGCACACGCACGC 1 chr19:40090485-40090985 ( 45) TGATACCCGCGCACACACACGC 1 chr8:1892412-1892912 ( 50) GATAACACACACGTGCGCGCAC 1 chr19:42270593-42271093 ( 24) AGAAGCACGCACACGTCATCAC 1 chr7:101172144-101172644 ( 12) GCGCGCGCCCGCGCGTGCTCAC 1 chr19:53537814-53538314 ( 76) CAGCGCGCATGCGCACGCGCAC 1 chr7:155810247-155810747 ( 68) GCACTGGCGCGCGCGTCCACAC 1 chr16:4425511-4426011 ( 68) CGTCGCGCACGCGCAGGCGCAC 1 chr14:94080601-94081101 ( 62) TCTCAGGCACGAACGCGCGCAC 1 chr17:38296782-38297282 ( 48) GCGAGGACGCGCACGTGCTCGC 1 chr12:31326027-31326527 ( 15) ATTTGCATACGGGCGCGCGCAC 1 chr11:57459706-57460206 ( 16) GCTCACCCGTGTGCACACTCAC 1 chr1:155273216-155273716 ( 67) CCGTGAGCGAGCACGTACGCAC 1 chr2:36356596-36357096 ( 77) GTCCCCGCGCAGACGCGCACAC 1 chr2:241881328-241881828 ( 22) CCCCTCACACGTATGGGCACGC 1 chr10:74825761-74826261 ( 73) GGGCGCGCGCGGGCGGGCACGC 1 chr9:4666271-4666771 ( 61) CAGCGCAGACGCGCGCCCTCAC 1 chr19:50328429-50328929 ( 6) AGTTGAGCACGTACGCGAAGAC 1 chr19:34359170-34359670 ( 21) CCCTGCGCGGGGACATGCGCAC 1 chr6:31834299-31834799 ( 58) TCCCGCGCGCGCGCGGGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCRCRCRCGCRCGYGCACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.5687 E= 4.2e-044 110 -115 13 -32 -58 90 -79 -132 127 -137 -5 -10 -10 85 -1217 55 110 -395 75 -132 -132 129 -163 -1217 134 -195 44 -190 -1217 144 -237 -290 200 -395 -5 -1217 -132 125 -295 -90 90 -1217 104 -1217 -290 90 -95 10 180 -1217 21 -190 -1217 144 -1217 -90 100 -1217 100 -1217 -1217 63 -163 118 55 -195 100 -1217 -132 147 -1217 -1217 210 -1217 -95 -32 -1217 154 -395 -1217 230 -1217 -79 -1217 -1217 157 -1217 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCRCRCRCGCRCGYGCACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 46 E= 4.2e-044 0.347826 0.152174 0.369565 0.130435 0.108696 0.630435 0.195652 0.065217 0.391304 0.130435 0.326087 0.152174 0.152174 0.608696 0.000000 0.239130 0.347826 0.021739 0.565217 0.065217 0.065217 0.826087 0.108696 0.000000 0.413043 0.086957 0.456522 0.043478 0.000000 0.913043 0.065217 0.021739 0.652174 0.021739 0.326087 0.000000 0.065217 0.804348 0.043478 0.086957 0.304348 0.000000 0.695652 0.000000 0.021739 0.630435 0.173913 0.173913 0.565217 0.000000 0.391304 0.043478 0.000000 0.913043 0.000000 0.086957 0.326087 0.000000 0.673913 0.000000 0.000000 0.521739 0.108696 0.369565 0.239130 0.086957 0.673913 0.000000 0.065217 0.934783 0.000000 0.000000 0.695652 0.000000 0.173913 0.130435 0.000000 0.978261 0.021739 0.000000 0.804348 0.000000 0.195652 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCRCRCRCGCRCGYGCACAC MEME-4 regular expression -------------------------------------------------------------------------------- [GA]C[AG][CT][GA]C[GA]C[AG]C[GA]C[AG]C[GA][CT][GA]CACAC -------------------------------------------------------------------------------- Time 1292.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CBCCYKCYHCCKCCBCCDCYYC MEME-5 width = 22 sites = 96 llr = 965 E-value = 5.1e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif CBCCYKCYHCCKCCBCCDCYYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :11:::::2:2::::::2::1: pos.-specific C 83765286486299388:a448 probability G :312242:21:41:31:4:12: matrix T 232233:33234:14224:532 bits 2.6 2.4 2.1 1.8 Relative 1.6 Entropy 1.3 * (14.5 bits) 1.0 * ** * * * 0.8 * ** * ** ***** * 0.5 * * ** ***** ***** * 0.3 * ******************** 0.0 ---------------------- Multilevel CCCCCGCCCCCGCCTCCTCTCC consensus TT TT TT TT G TG CT sequence G GC A C A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBCCYKCYHCCKCCBCCDCYYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:12562716-12563216 + 25 1.07e-10 tcccccacct ctccctcctcctcctcctcctc ccgcgcccgc chr10:16521303-16521803 + 59 1.07e-10 AAGTTGCCTT TTTCTGCCTCCTCCTCCTCTTC TTTCGCTCGC chr7:50782767-50783267 + 36 5.62e-10 GAACCCCTTG TTCCCTCCACTGCCTCCTCTCC TCCCCCACAG chr12:122078316-12207881 - 36 1.82e-09 CCGGCCGTGC CCCTCGCCACCTCCTCCTCTCC CGGCGTCCGT chr17:38673873-38674373 + 53 4.09e-09 GGGAAACCGC CTCCGCCCTCTTCCTCCTCTCC GCGGCGGGGG chr1:210233441-210233941 + 51 3.33e-08 TCTCGCTTCC CTTCCTCCCCTCCCGCCTCTTC GGCCCTAGCA chr6:30617222-30617722 + 72 7.44e-08 AGCACCTCCC TTTCCTCTGCTTCCGCCACTTC CGCCCTG chr1:17438335-17438835 + 68 1.30e-07 ACGAGCCACC CGGCCTCCACTTCCTCCTCTGC CCTCCCCAAA chr6:170290223-170290723 - 70 2.61e-07 TCTCTCTTT CTCTTTCTCCCCCTCCCTCTCC TGCGAAGAAG chr4:68349655-68350155 + 57 3.08e-07 TTCTCGACTC TTCCCGCTTTTTCCCTTTCTCC CTTCCTTTCA chr5:69217693-69218193 - 48 3.08e-07 CACCGCTCTG CCTCTGCCACCGCCTTTACTCC CCGACGCCGT chr17:46851893-46852393 + 46 3.63e-07 TTGCCTCGGA CTCCTTCCCCACCCTCCGCCTT CGCCCTGCGG chr5:77210007-77210507 - 45 6.74e-07 CGCCTCGGCG CCCTCCCCTCCTCCTCCGCTGT CCAGAGGCCT chr22:36816693-36817193 - 16 7.80e-07 GCAAGCGCGC TCCCCTCCCCATCCCTCTCCCC TCGTCCACCG chr1:155244565-155245065 - 20 1.04e-06 CGCTCTCTCG CTCTCGCTCTCTCTCTCTCTCC GGCTCGCCAG chr7:155468261-155468761 + 52 1.04e-06 TGTGCCCCCC TCCTTTCCCCAGCCTCTACCCC CTCCAACTAA chr17:1109247-1109747 - 63 1.04e-06 CGGCCGCGGC CTCCTCGCTCCTCCTCCGCCGC AGAAGCCTCC chr12:104559-105059 + 49 1.19e-06 AGCTGGGGCA TTTCTGCCTCTCCTGCCTCTTT CCATCGGCTG chr9:129665367-129665867 - 12 1.19e-06 TCGCCCCCCG TCCTCTCCTCCGCCCTCTCCTC CCCGCGCGCC chr1:26621017-26621517 + 70 1.57e-06 CCCTTTCCCC CACGTTCCTCAGCCGCCACCTC AGAGCCTTC chr6:33208200-33208700 - 74 1.57e-06 CGTCA CTTCCGCCTGCTCCTCCGCTAC ACCCGCTCCC chr6:33200086-33200586 + 25 1.57e-06 TGTTGTTCTc cgcctgccaccgccgccgccgc cgccgctgcg chr17:38510071-38510571 - 33 1.57e-06 CTACGCTCGT CGTCCGCCTCATCCCCCGCCCC TGCCCGCCGA chr21:32771745-32772245 - 6 1.79e-06 CTCTCTCTCG CTCTCTCTCTCTCTCTCTCTCT CGCTC chr8:7227893-7228393 - 7 1.79e-06 AGGCCGCTCG CGCCGTGTCCTTCCTCTTCCCC AAGTTC chr21:36130151-36130651 + 72 1.79e-06 CGCGGAGCCG CTCCTGCCGCCGCCGCCGCCGC CTCCTCA chr10:93566517-93567017 + 69 2.04e-06 AAGCCAACCG CACCCGCTTTCCCTTCTTCTCC GACGTCAAGG chr1:46466513-46467013 - 12 2.04e-06 GCCGCGCTCC CTCCCGCTCCCGCCGCCGCCGT CGCCGCCGCG chr17:38799211-38799711 - 27 2.04e-06 TCTCCGCCGC CCCCCTCTTTCGCCGCCGCCGC CGCCGCCCCG chr11:119030277-11903077 - 21 2.31e-06 CTCTTCGCCG CCCGCCGCCTCTCCTCCTCTCC CGCCCGCCGC chr1:6615122-6615622 + 48 2.31e-06 GCGCGGTCAA CGCGGGCCTTCGCCTCCGCTCC GTGGGCGGCC chr17:38702298-38702798 - 57 2.62e-06 TCAATCCCTG CTCGTGCCCTCTCCGCCGCCCT ATGCGTGCCA chr11:119057172-11905767 + 31 2.96e-06 ACGGGGCCAG CGCGCTCCACTCCTTCCTCCCC AGCGCCGGCC chr3:125766330-125766830 + 23 2.96e-06 AGGCCGCTCG CGCCGGGTCCTTCCTCTTCCCC AGGTGCAGGC chr5:69369270-69369770 - 76 3.34e-06 TGC CGCCCGCCCCTTCCGGCTCCTC CCTGTAGAGC chr9:133356437-133356937 - 56 3.34e-06 CTCATCCCAA CTGCGCCCTTCTCCGCCACTCC GTTCCCCTCC chr6:31901960-31902460 + 59 3.76e-06 AGAGCGGAAA TACGTTCCACACCCCCCTCTTT CTCGCTCCCC chr6:33391598-33392098 - 33 4.23e-06 CGCTACCAGC CCCGCGCCACACCCGCCACTTT TGAATTCCAA chr1:212606660-212607160 - 61 4.23e-06 GTAACGGCTC TCCGGGCCCCACCCTCCGCTTC CACGCCCTCA chr3:187744663-187745163 - 30 4.23e-06 CGCGCTCGCG CTCTCGCTCTTTCTGCTGCTGC TTGCGTACGG chr17:38606180-38606680 + 45 4.74e-06 ATGCTGGGAG CGCCCGGATCCTCCTCTGCTTC TGCCTCGCGA chr17:45894351-45894851 + 58 5.93e-06 TGCCACCGCC CACCTTCTGCCGCCGCCACCAC AGCCACCTTC chr17:36545388-36545888 - 72 5.93e-06 CTCCCAG CTGCCGCCGCCGCCGCCGCTGC TGTTTCTGCC chr8:7221701-7222201 - 55 5.93e-06 AGGCCGCTCG CGCCGTATCCTTCCTCTTCTCC AGGTGCAGGC chr6:33427600-33428100 + 2 5.93e-06 T TGCCCCCCTCCCCCGTCTCTCT CGCGCTGTCT chr17:35795415-35795915 - 21 5.93e-06 CCGCCCCCTC CGCCTGCCTTTCCTTCCTCCCT CCCTCGGTCC chr7:5420981-5421481 - 8 5.93e-06 GCGGTCCGTG CACGGTCCCCCGCCGCCGCTGC TGTCCGG chr1:243850491-243850991 + 3 6.62e-06 gg ccctgcccgccgcctctgctcc cctccctgcc chr13:114131917-11413241 - 75 6.62e-06 GCGG CTCCCTGCGCCTCCTCTGCGCC CGGAGCGGCC chr2:128317654-128318154 - 77 6.62e-06 CC TGCCTTCCCTACCCCCTTCTGC CCTCTTGGGG chr19:39833260-39833760 - 54 6.62e-06 GTCGCCCCTC CCCCGTCCACCTGCTCTACTCT TCCCCCGCGT chr5:71455414-71455914 - 78 7.37e-06 C TCTCTCCCGCCGCCGCCGCTTT TTCATGACCC chr16:527368-527868 - 5 7.37e-06 ACCGCCCGGG CCACTTCTCCTGCCCTCGCTGC TGGA chr6:28814047-28814547 - 45 7.37e-06 CTTCGCTTCT CCTCCGCCTTTGCCGCCGCCGC CGCAGGTGCG chr17:38296782-38297282 + 25 1.01e-05 TCCGCCCTCC TTACTCCACCCTCCCCCACTCC CGCGAGCACG chr6:30556138-30556638 - 16 1.01e-05 CTCCCCCGTC CGCCTTCCATCGCCGCCGCGGC GGTAATTCTG chr5:93583763-93584263 + 20 1.01e-05 TGATCTTCCT CGCCGGCTGCCTCCCGCTCTCC AGCGCTGCCT chrUn_GL000219v1:42366-4 + 16 1.23e-05 CACCGAGGCG CGCATGGCCCTGCCTCTTCCTC CAGTGACGCG chr16:528240-528740 - 45 1.23e-05 ACAGACGGGG CTCCCGCCAGCCCCTCCACGCC AGGTGGCCGC chr16:401749-402249 + 56 1.35e-05 ACGACTGTCT CCCCGCGTACCGCCACCTCTTC TGCCCGGACC chr6:32968177-32968677 - 19 1.80e-05 ACCTCCTGCC TCAGCGCCCCCTCCCCCACTAC CCGCGGCCTA chrX:1591267-1591767 - 54 1.97e-05 CGGGTTTCTC CTTCTTGCCCTGGCTCCGCCCC CGGGAGGAGG chr6:170306553-170307053 - 6 2.16e-05 GCCGCCTCAG CCACCGCCACAGCCGCCTCGTT CACTT chr12:12266855-12267355 + 48 2.36e-05 CGAGCCCCTT CTCCCGGTACTGCCTCCTGTAC GGCCAGGGAA chr17:38674869-38675369 - 55 2.36e-05 ATCCCACCCG CGCACGCTCCCTCCCGCGCTCC CTCCCAGCCG chr11:119056819-11905731 + 1 2.57e-05 . CTCTTGCCTCCGCTCCTGCGGC CCCAGCTCTG chr6:28940566-28941066 - 49 2.57e-05 GTTTCTCGCC CTTCGCCCCCTTCTTACACTTC CCTGCACGCC chr10:77926095-77926595 + 72 2.80e-05 AGCTCCGCCT TGGCGCCTCCCGCCTCCTCGTC CAGCTGC chr4:155953453-155953953 - 13 3.05e-05 CTCCCCGGGA TCTGTCCCTGCTCCCTCACTTC CTGTCCCGGG chr3:44477502-44478002 + 75 3.05e-05 GGCGGCGGGG CTTGTCCAACATCCCTCACCTC CCTC chr17:1628402-1628902 + 79 3.32e-05 TGGCGGCCCC TCATCGCTCCATCTCTCTCCTC chr1:2586613-2587113 - 7 3.60e-05 GACTCCCTGT TCCCCGCTCCCGGCTCCTCGCT CCTGGA chr6:30213980-30214480 + 52 3.60e-05 TCTCTTCCTG CTCTGCCTGCAGCCGCCGCGTC CGGTCCAGCC chr5:136192759-136193259 + 60 3.60e-05 Tcctccgcgt cctccggcgccgccgccaccgc agcGTCTCGG chr12:66764-67264 - 35 3.60e-05 TCTCAGCGCT CAGCTCGTCCAGCCGCCGCTCC AGCTCGTCGA chr17:38747538-38748038 - 21 3.91e-05 TCTCGCTCTG CCCGGTCTACCCCCTTTTCCAT CTGGGCGGGG chr8:143609623-143610123 - 30 3.91e-05 CCGGGACCCC TCCCCGCTCCTCCGGCCTCTCC GAGCGCGAGT chr14:94026163-94026663 + 40 4.23e-05 CGGTCGGGTG TATTCTCCGCCGCCCCCACGCC CTCGAGGTCC chr2:61537063-61537563 + 30 4.23e-05 CTATCACACT CCTCGCCTTCCTCCACCGCCAC CCGCACACGC chr6:32968388-32968888 - 43 4.58e-05 TCCTGGACTC TGTCCCCCCCACTCGCCTCTCC ATACGAGTTC chr7:76549085-76549585 + 52 4.95e-05 CTCCGCACTG CCCTCGCTTCCTGCGCCTGTTC AGGTCATCGC chr21:37367771-37368271 + 1 4.95e-05 . catcctcTTCCCCCAGCTCCTC CCTCGTCCCT chr19:34172423-34172923 - 3 5.35e-05 GGTGCCCCCG CTCATGGCGCCGCCGCCGCCGC TC chr1:112956123-112956623 + 41 5.35e-05 agctcgcccg cgcgcgccggcgcCCCCTCCCC GCCACGTGAC chr14:104461724-10446222 - 24 5.76e-05 CCACGGAGCC CCCCTGCCGCTGTCCTCGCTGC TTAGCCTGCA chr15:66252741-66253241 - 45 6.21e-05 CTATTTCTTT CCCATCCCATAGCCGTTACTCT ATTCCGGGAA chr15:31215635-31216135 + 50 6.21e-05 GTGTCACGCG CGGGCGCTCCTGCCGCCGCGCC TGGGAGAGGC chr22:23767990-23768490 - 73 6.68e-05 CCCCAT CCCGTCGCCTCCCCGTCTCCTC TCCCCTCCAG chr5:1004467-1004967 - 18 7.18e-05 GAACTCTCGG CGGCGTCACCCTCTTCCACCGC GACTCCGCGT chr19:41522006-41522506 + 73 7.18e-05 CGCGACCGGT CTCGTGCTCGCGCTTCCGCGGC CCGGCT chr15:31328048-31328548 + 64 7.72e-05 TTTCCTTCGC CACTCGGCACATTCTTCGCTCT CTTCTTCCTG chr16:426507-427007 - 2 8.87e-05 CGGCCCGGGC CGCTCCGTACCTGCTCTGCCCC G chr20:1803411-1803911 - 18 1.02e-04 GGGTGCATCG TGCGCTCCAGTGCCCCTACCGC GGCGCCCCGC chr1:15848345-15848845 + 10 1.16e-04 GCCCGACAG CCGGGTCCGGCGCCGCCACTCC AAGCTGCTCT chr6:29748560-29749060 + 3 1.24e-04 GG CCGCGTCCACTCCCCGCACCCC CGACAGCGCA chr15:29821870-29822370 - 67 1.32e-04 CGGGCCCTTC CGGCCGCCCCCGCCCGTGCCCC GCTCGCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBCCYKCYHCCKCCBCCDCYYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:12562716-12563216 1.1e-10 24_[+5]_54 chr10:16521303-16521803 1.1e-10 58_[+5]_20 chr7:50782767-50783267 5.6e-10 35_[+5]_43 chr12:122078316-12207881 1.8e-09 35_[-5]_43 chr17:38673873-38674373 4.1e-09 52_[+5]_26 chr1:210233441-210233941 3.3e-08 50_[+5]_28 chr6:30617222-30617722 7.4e-08 71_[+5]_7 chr1:17438335-17438835 1.3e-07 67_[+5]_11 chr6:170290223-170290723 2.6e-07 69_[-5]_9 chr4:68349655-68350155 3.1e-07 56_[+5]_22 chr5:69217693-69218193 3.1e-07 47_[-5]_31 chr17:46851893-46852393 3.6e-07 45_[+5]_33 chr5:77210007-77210507 6.7e-07 44_[-5]_34 chr22:36816693-36817193 7.8e-07 15_[-5]_63 chr1:155244565-155245065 1e-06 19_[-5]_59 chr7:155468261-155468761 1e-06 51_[+5]_27 chr17:1109247-1109747 1e-06 62_[-5]_16 chr12:104559-105059 1.2e-06 48_[+5]_30 chr9:129665367-129665867 1.2e-06 11_[-5]_67 chr1:26621017-26621517 1.6e-06 69_[+5]_9 chr6:33208200-33208700 1.6e-06 73_[-5]_5 chr6:33200086-33200586 1.6e-06 24_[+5]_54 chr17:38510071-38510571 1.6e-06 32_[-5]_46 chr21:32771745-32772245 1.8e-06 5_[-5]_73 chr8:7227893-7228393 1.8e-06 6_[-5]_72 chr21:36130151-36130651 1.8e-06 71_[+5]_7 chr10:93566517-93567017 2e-06 68_[+5]_10 chr1:46466513-46467013 2e-06 11_[-5]_67 chr17:38799211-38799711 2e-06 26_[-5]_52 chr11:119030277-11903077 2.3e-06 20_[-5]_58 chr1:6615122-6615622 2.3e-06 47_[+5]_31 chr17:38702298-38702798 2.6e-06 56_[-5]_22 chr11:119057172-11905767 3e-06 30_[+5]_48 chr3:125766330-125766830 3e-06 22_[+5]_56 chr5:69369270-69369770 3.3e-06 75_[-5]_3 chr9:133356437-133356937 3.3e-06 55_[-5]_23 chr6:31901960-31902460 3.8e-06 58_[+5]_20 chr6:33391598-33392098 4.2e-06 32_[-5]_46 chr1:212606660-212607160 4.2e-06 60_[-5]_18 chr3:187744663-187745163 4.2e-06 29_[-5]_49 chr17:38606180-38606680 4.7e-06 44_[+5]_34 chr17:45894351-45894851 5.9e-06 57_[+5]_21 chr17:36545388-36545888 5.9e-06 71_[-5]_7 chr8:7221701-7222201 5.9e-06 54_[-5]_24 chr6:33427600-33428100 5.9e-06 1_[+5]_77 chr17:35795415-35795915 5.9e-06 20_[-5]_58 chr7:5420981-5421481 5.9e-06 7_[-5]_71 chr1:243850491-243850991 6.6e-06 2_[+5]_76 chr13:114131917-11413241 6.6e-06 74_[-5]_4 chr2:128317654-128318154 6.6e-06 76_[-5]_2 chr19:39833260-39833760 6.6e-06 53_[-5]_25 chr5:71455414-71455914 7.4e-06 77_[-5]_1 chr16:527368-527868 7.4e-06 4_[-5]_74 chr6:28814047-28814547 7.4e-06 44_[-5]_34 chr17:38296782-38297282 1e-05 24_[+5]_54 chr6:30556138-30556638 1e-05 15_[-5]_63 chr5:93583763-93584263 1e-05 19_[+5]_59 chrUn_GL000219v1:42366-4 1.2e-05 15_[+5]_63 chr16:528240-528740 1.2e-05 44_[-5]_34 chr16:401749-402249 1.4e-05 55_[+5]_23 chr6:32968177-32968677 1.8e-05 18_[-5]_60 chrX:1591267-1591767 2e-05 53_[-5]_25 chr6:170306553-170307053 2.2e-05 5_[-5]_73 chr12:12266855-12267355 2.4e-05 47_[+5]_31 chr17:38674869-38675369 2.4e-05 54_[-5]_24 chr11:119056819-11905731 2.6e-05 [+5]_78 chr6:28940566-28941066 2.6e-05 48_[-5]_30 chr10:77926095-77926595 2.8e-05 71_[+5]_7 chr4:155953453-155953953 3.1e-05 12_[-5]_66 chr3:44477502-44478002 3.1e-05 74_[+5]_4 chr17:1628402-1628902 3.3e-05 78_[+5] chr1:2586613-2587113 3.6e-05 6_[-5]_72 chr6:30213980-30214480 3.6e-05 51_[+5]_27 chr5:136192759-136193259 3.6e-05 59_[+5]_19 chr12:66764-67264 3.6e-05 34_[-5]_44 chr17:38747538-38748038 3.9e-05 20_[-5]_58 chr8:143609623-143610123 3.9e-05 29_[-5]_49 chr14:94026163-94026663 4.2e-05 39_[+5]_39 chr2:61537063-61537563 4.2e-05 29_[+5]_49 chr6:32968388-32968888 4.6e-05 42_[-5]_36 chr7:76549085-76549585 5e-05 51_[+5]_27 chr21:37367771-37368271 5e-05 [+5]_78 chr19:34172423-34172923 5.3e-05 2_[-5]_76 chr1:112956123-112956623 5.3e-05 40_[+5]_38 chr14:104461724-10446222 5.8e-05 23_[-5]_55 chr15:66252741-66253241 6.2e-05 44_[-5]_34 chr15:31215635-31216135 6.2e-05 49_[+5]_29 chr22:23767990-23768490 6.7e-05 72_[-5]_6 chr5:1004467-1004967 7.2e-05 17_[-5]_61 chr19:41522006-41522506 7.2e-05 72_[+5]_6 chr15:31328048-31328548 7.7e-05 63_[+5]_15 chr16:426507-427007 8.9e-05 1_[-5]_77 chr20:1803411-1803911 0.0001 17_[-5]_61 chr1:15848345-15848845 0.00012 9_[+5]_69 chr6:29748560-29749060 0.00012 2_[+5]_76 chr15:29821870-29822370 0.00013 66_[-5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBCCYKCYHCCKCCBCCDCYYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CBCCYKCYHCCKCCBCCDCYYC width=22 seqs=96 chr12:12562716-12563216 ( 25) CTCCCTCCTCCTCCTCCTCCTC 1 chr10:16521303-16521803 ( 59) TTTCTGCCTCCTCCTCCTCTTC 1 chr7:50782767-50783267 ( 36) TTCCCTCCACTGCCTCCTCTCC 1 chr12:122078316-12207881 ( 36) CCCTCGCCACCTCCTCCTCTCC 1 chr17:38673873-38674373 ( 53) CTCCGCCCTCTTCCTCCTCTCC 1 chr1:210233441-210233941 ( 51) CTTCCTCCCCTCCCGCCTCTTC 1 chr6:30617222-30617722 ( 72) TTTCCTCTGCTTCCGCCACTTC 1 chr1:17438335-17438835 ( 68) CGGCCTCCACTTCCTCCTCTGC 1 chr6:170290223-170290723 ( 70) CTCTTTCTCCCCCTCCCTCTCC 1 chr4:68349655-68350155 ( 57) TTCCCGCTTTTTCCCTTTCTCC 1 chr5:69217693-69218193 ( 48) CCTCTGCCACCGCCTTTACTCC 1 chr17:46851893-46852393 ( 46) CTCCTTCCCCACCCTCCGCCTT 1 chr5:77210007-77210507 ( 45) CCCTCCCCTCCTCCTCCGCTGT 1 chr22:36816693-36817193 ( 16) TCCCCTCCCCATCCCTCTCCCC 1 chr1:155244565-155245065 ( 20) CTCTCGCTCTCTCTCTCTCTCC 1 chr7:155468261-155468761 ( 52) TCCTTTCCCCAGCCTCTACCCC 1 chr17:1109247-1109747 ( 63) CTCCTCGCTCCTCCTCCGCCGC 1 chr12:104559-105059 ( 49) TTTCTGCCTCTCCTGCCTCTTT 1 chr9:129665367-129665867 ( 12) TCCTCTCCTCCGCCCTCTCCTC 1 chr1:26621017-26621517 ( 70) CACGTTCCTCAGCCGCCACCTC 1 chr6:33208200-33208700 ( 74) CTTCCGCCTGCTCCTCCGCTAC 1 chr6:33200086-33200586 ( 25) CGCCTGCCACCGCCGCCGCCGC 1 chr17:38510071-38510571 ( 33) CGTCCGCCTCATCCCCCGCCCC 1 chr21:32771745-32772245 ( 6) CTCTCTCTCTCTCTCTCTCTCT 1 chr8:7227893-7228393 ( 7) CGCCGTGTCCTTCCTCTTCCCC 1 chr21:36130151-36130651 ( 72) CTCCTGCCGCCGCCGCCGCCGC 1 chr10:93566517-93567017 ( 69) CACCCGCTTTCCCTTCTTCTCC 1 chr1:46466513-46467013 ( 12) CTCCCGCTCCCGCCGCCGCCGT 1 chr17:38799211-38799711 ( 27) CCCCCTCTTTCGCCGCCGCCGC 1 chr11:119030277-11903077 ( 21) CCCGCCGCCTCTCCTCCTCTCC 1 chr1:6615122-6615622 ( 48) CGCGGGCCTTCGCCTCCGCTCC 1 chr17:38702298-38702798 ( 57) CTCGTGCCCTCTCCGCCGCCCT 1 chr11:119057172-11905767 ( 31) CGCGCTCCACTCCTTCCTCCCC 1 chr3:125766330-125766830 ( 23) CGCCGGGTCCTTCCTCTTCCCC 1 chr5:69369270-69369770 ( 76) CGCCCGCCCCTTCCGGCTCCTC 1 chr9:133356437-133356937 ( 56) CTGCGCCCTTCTCCGCCACTCC 1 chr6:31901960-31902460 ( 59) TACGTTCCACACCCCCCTCTTT 1 chr6:33391598-33392098 ( 33) CCCGCGCCACACCCGCCACTTT 1 chr1:212606660-212607160 ( 61) TCCGGGCCCCACCCTCCGCTTC 1 chr3:187744663-187745163 ( 30) CTCTCGCTCTTTCTGCTGCTGC 1 chr17:38606180-38606680 ( 45) CGCCCGGATCCTCCTCTGCTTC 1 chr17:45894351-45894851 ( 58) CACCTTCTGCCGCCGCCACCAC 1 chr17:36545388-36545888 ( 72) CTGCCGCCGCCGCCGCCGCTGC 1 chr8:7221701-7222201 ( 55) CGCCGTATCCTTCCTCTTCTCC 1 chr6:33427600-33428100 ( 2) TGCCCCCCTCCCCCGTCTCTCT 1 chr17:35795415-35795915 ( 21) CGCCTGCCTTTCCTTCCTCCCT 1 chr7:5420981-5421481 ( 8) CACGGTCCCCCGCCGCCGCTGC 1 chr1:243850491-243850991 ( 3) CCCTGCCCGCCGCCTCTGCTCC 1 chr13:114131917-11413241 ( 75) CTCCCTGCGCCTCCTCTGCGCC 1 chr2:128317654-128318154 ( 77) TGCCTTCCCTACCCCCTTCTGC 1 chr19:39833260-39833760 ( 54) CCCCGTCCACCTGCTCTACTCT 1 chr5:71455414-71455914 ( 78) TCTCTCCCGCCGCCGCCGCTTT 1 chr16:527368-527868 ( 5) CCACTTCTCCTGCCCTCGCTGC 1 chr6:28814047-28814547 ( 45) CCTCCGCCTTTGCCGCCGCCGC 1 chr17:38296782-38297282 ( 25) TTACTCCACCCTCCCCCACTCC 1 chr6:30556138-30556638 ( 16) CGCCTTCCATCGCCGCCGCGGC 1 chr5:93583763-93584263 ( 20) CGCCGGCTGCCTCCCGCTCTCC 1 chrUn_GL000219v1:42366-4 ( 16) CGCATGGCCCTGCCTCTTCCTC 1 chr16:528240-528740 ( 45) CTCCCGCCAGCCCCTCCACGCC 1 chr16:401749-402249 ( 56) CCCCGCGTACCGCCACCTCTTC 1 chr6:32968177-32968677 ( 19) TCAGCGCCCCCTCCCCCACTAC 1 chrX:1591267-1591767 ( 54) CTTCTTGCCCTGGCTCCGCCCC 1 chr6:170306553-170307053 ( 6) CCACCGCCACAGCCGCCTCGTT 1 chr12:12266855-12267355 ( 48) CTCCCGGTACTGCCTCCTGTAC 1 chr17:38674869-38675369 ( 55) CGCACGCTCCCTCCCGCGCTCC 1 chr11:119056819-11905731 ( 1) CTCTTGCCTCCGCTCCTGCGGC 1 chr6:28940566-28941066 ( 49) CTTCGCCCCCTTCTTACACTTC 1 chr10:77926095-77926595 ( 72) TGGCGCCTCCCGCCTCCTCGTC 1 chr4:155953453-155953953 ( 13) TCTGTCCCTGCTCCCTCACTTC 1 chr3:44477502-44478002 ( 75) CTTGTCCAACATCCCTCACCTC 1 chr17:1628402-1628902 ( 79) TCATCGCTCCATCTCTCTCCTC 1 chr1:2586613-2587113 ( 7) TCCCCGCTCCCGGCTCCTCGCT 1 chr6:30213980-30214480 ( 52) CTCTGCCTGCAGCCGCCGCGTC 1 chr5:136192759-136193259 ( 60) CCTCCGGCGCCGCCGCCACCGC 1 chr12:66764-67264 ( 35) CAGCTCGTCCAGCCGCCGCTCC 1 chr17:38747538-38748038 ( 21) CCCGGTCTACCCCCTTTTCCAT 1 chr8:143609623-143610123 ( 30) TCCCCGCTCCTCCGGCCTCTCC 1 chr14:94026163-94026663 ( 40) TATTCTCCGCCGCCCCCACGCC 1 chr2:61537063-61537563 ( 30) CCTCGCCTTCCTCCACCGCCAC 1 chr6:32968388-32968888 ( 43) TGTCCCCCCCACTCGCCTCTCC 1 chr7:76549085-76549585 ( 52) CCCTCGCTTCCTGCGCCTGTTC 1 chr21:37367771-37368271 ( 1) CATCCTCTTCCCCCAGCTCCTC 1 chr19:34172423-34172923 ( 3) CTCATGGCGCCGCCGCCGCCGC 1 chr1:112956123-112956623 ( 41) CGCGCGCCGGCGCCCCCTCCCC 1 chr14:104461724-10446222 ( 24) CCCCTGCCGCTGTCCTCGCTGC 1 chr15:66252741-66253241 ( 45) CCCATCCCATAGCCGTTACTCT 1 chr15:31215635-31216135 ( 50) CGGGCGCTCCTGCCGCCGCGCC 1 chr22:23767990-23768490 ( 73) CCCGTCGCCTCCCCGTCTCCTC 1 chr5:1004467-1004967 ( 18) CGGCGTCACCCTCTTCCACCGC 1 chr19:41522006-41522506 ( 73) CTCGTGCTCGCGCTTCCGCGGC 1 chr15:31328048-31328548 ( 64) CACTCGGCACATTCTTCGCTCT 1 chr16:426507-427007 ( 2) CGCTCCGTACCTGCTCTGCCCC 1 chr20:1803411-1803911 ( 18) TGCGCTCCAGTGCCCCTACCGC 1 chr1:15848345-15848845 ( 10) CCGGGTCCGGCGCCGCCACTCC 1 chr6:29748560-29749060 ( 3) CCGCGTCCACTCCCCGCACCCC 1 chr15:29821870-29822370 ( 67) CGGCCGCCCCCGCCCGTGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBCCYKCYHCCKCCBCCDCYYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.0458 E= 5.1e-031 -1323 117 -1323 56 -80 -6 -37 99 -164 96 -169 20 -197 82 -77 3 -1323 51 -69 94 -1323 -62 41 103 -396 129 -102 -1323 -197 91 -1323 99 43 15 -111 62 -1323 117 -221 3 12 74 -1323 68 -1323 -77 27 128 -1323 144 -269 -238 -1323 134 -501 -27 -238 -43 -2 124 -396 117 -243 3 -1323 123 -1323 36 43 -1323 11 136 -1323 154 -401 -1323 -1323 15 -156 165 -138 41 -62 73 -1323 129 -1323 12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBCCYKCYHCCKCCBCCDCYYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 96 E= 5.1e-031 0.000000 0.760417 0.000000 0.239583 0.093750 0.322917 0.260417 0.322917 0.052083 0.656250 0.104167 0.187500 0.041667 0.593750 0.197917 0.166667 0.000000 0.479167 0.208333 0.312500 0.000000 0.218750 0.447917 0.333333 0.010417 0.822917 0.166667 0.000000 0.041667 0.635417 0.000000 0.322917 0.218750 0.375000 0.156250 0.250000 0.000000 0.760417 0.072917 0.166667 0.177083 0.562500 0.000000 0.260417 0.000000 0.197917 0.406250 0.395833 0.000000 0.916667 0.052083 0.031250 0.000000 0.854167 0.010417 0.135417 0.031250 0.250000 0.333333 0.385417 0.010417 0.760417 0.062500 0.166667 0.000000 0.791667 0.000000 0.208333 0.218750 0.000000 0.364583 0.416667 0.000000 0.979167 0.020833 0.000000 0.000000 0.375000 0.114583 0.510417 0.062500 0.447917 0.218750 0.270833 0.000000 0.822917 0.000000 0.177083 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBCCYKCYHCCKCCBCCDCYYC MEME-5 regular expression -------------------------------------------------------------------------------- [CT][CTG]CC[CTG][GTC]C[CT][CTA]C[CT][GT]CC[TGC]C[CT][TGA]C[TC][CTG]C -------------------------------------------------------------------------------- Time 1592.17 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTTTWTGWHTMRGWAAKKGAA MEME-6 width = 22 sites = 14 llr = 255 E-value = 2.0e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTTTWTGWHTMRGWAAKKGAA MEME-6 Description -------------------------------------------------------------------------------- Simplified A 41:133::54244:68711276 pos.-specific C 1::3:1:::314::1::1:11: probability G 11::::1a:11:57::1457:3 matrix T 48a6769:52621342144:11 bits 2.6 * 2.4 * 2.1 * * 1.8 * * * * Relative 1.6 ** * *** * Entropy 1.3 ** * *** *** * (26.3 bits) 1.0 ******** **** ** 0.8 ********* * ***** **** 0.5 ***************** **** 0.3 ********************** 0.0 ---------------------- Multilevel TTTTTTTGAATCGGAAAGGGAA consensus A CAA TCAAATTT TTA G sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTWTGWHTMRGWAAKKGAA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr18:77421553-77422053 + 7 8.12e-12 cacccc tttctttgactaggaaagggaa ctccctgacc chr5:90668180-90668680 + 14 8.12e-12 ccgtcacccc tttctttgactaggaaagggaa ctccctgacc chr7:93591296-93591796 + 32 9.39e-12 ccgtcacccc tttctttgactcagaaagggaa ctccctgacc chr3:17860949-17861449 + 2 1.89e-11 t tttctttgactcggaaagggaa ctccctgacc chr3:196500644-196501144 + 34 4.20e-10 tgcccggcta attttttgtatttttagtagag agggggtttc chrUn_KI270467v1:2967-34 + 20 1.04e-09 gtatttggat attttatgtacagtatataata tttattttgt chrUn_KI270467v1:3181-36 + 57 1.26e-09 gtactttggt attttatgtagagtttattata aatggttggg chr14:93333069-93333569 + 44 3.14e-09 GTGACACATT ATTAAATGTATCAGAATATAAG AACTGTGTCA chr6:30717236-30717736 + 5 4.06e-09 GATC AGTTAATGAGACGGTAATTGAA GGCCGCCGTG chr9:14277096-14277596 + 72 1.16e-08 cacacacaca caTTTTTGAATCATTAAGTCAT TTGGAAG chr6:29976556-29977056 + 55 1.45e-08 AATGACAAGT GTTTACTGATATAGAAACGGAA TAACGGCGCT chr3:194136950-194137450 + 67 3.88e-08 AACTCCAAGT TGTTACTGTTCCGGAAAGGGAG GGAAAGAGGT chr15:96331672-96332172 - 31 4.14e-08 TTAGTTTTTC CTTTTTTGTTTTTGCTTTTGCA AAGTTTTGTC chr8:1973187-1973687 - 12 5.03e-08 CGTGCGCCTA TTTTTTGGTAAAAGTAGAGGCG ATGCGTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTWTGWHTMRGWAAKKGAA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:77421553-77422053 8.1e-12 6_[+6]_72 chr5:90668180-90668680 8.1e-12 13_[+6]_65 chr7:93591296-93591796 9.4e-12 31_[+6]_47 chr3:17860949-17861449 1.9e-11 1_[+6]_77 chr3:196500644-196501144 4.2e-10 33_[+6]_45 chrUn_KI270467v1:2967-34 1e-09 19_[+6]_59 chrUn_KI270467v1:3181-36 1.3e-09 56_[+6]_22 chr14:93333069-93333569 3.1e-09 43_[+6]_35 chr6:30717236-30717736 4.1e-09 4_[+6]_74 chr9:14277096-14277596 1.2e-08 71_[+6]_7 chr6:29976556-29977056 1.5e-08 54_[+6]_24 chr3:194136950-194137450 3.9e-08 66_[+6]_12 chr15:96331672-96332172 4.1e-08 30_[-6]_48 chr8:1973187-1973687 5e-08 11_[-6]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTWTGWHTMRGWAAKKGAA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTTTWTGWHTMRGWAAKKGAA width=22 seqs=14 chr18:77421553-77422053 ( 7) TTTCTTTGACTAGGAAAGGGAA 1 chr5:90668180-90668680 ( 14) TTTCTTTGACTAGGAAAGGGAA 1 chr7:93591296-93591796 ( 32) TTTCTTTGACTCAGAAAGGGAA 1 chr3:17860949-17861449 ( 2) TTTCTTTGACTCGGAAAGGGAA 1 chr3:196500644-196501144 ( 34) ATTTTTTGTATTTTTAGTAGAG 1 chrUn_KI270467v1:2967-34 ( 20) ATTTTATGTACAGTATATAATA 1 chrUn_KI270467v1:3181-36 ( 57) ATTTTATGTAGAGTTTATTATA 1 chr14:93333069-93333569 ( 44) ATTAAATGTATCAGAATATAAG 1 chr6:30717236-30717736 ( 5) AGTTAATGAGACGGTAATTGAA 1 chr9:14277096-14277596 ( 72) CATTTTTGAATCATTAAGTCAT 1 chr6:29976556-29977056 ( 55) GTTTACTGATATAGAAACGGAA 1 chr3:194136950-194137450 ( 67) TGTTACTGTTCCGGAAAGGGAG 1 chr15:96331672-96332172 ( 31) CTTTTTTGTTTTTGCTTTTGCA 1 chr8:1973187-1973687 ( 12) TTTTTTGGTAAAAGTAGAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTWTGWHTMRGWAAKKGAA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.9475 E= 2.0e-012 113 -124 -224 140 -119 -1045 -124 227 -1045 -1045 -1045 262 -119 -24 -1045 198 81 -1045 -1045 213 81 -124 -1045 181 -1045 -1045 -224 251 -1045 -1045 157 -1045 162 -1045 -1045 162 140 -24 -224 40 40 -124 -224 181 113 35 -1045 40 113 -1045 57 -19 -1045 -1045 108 81 181 -224 -1045 113 227 -1045 -1045 40 213 -1045 -124 -19 -19 -224 35 113 -19 -1045 57 113 40 -224 108 -1045 213 -124 -1045 -19 198 -1045 -24 -119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTWTGWHTMRGWAAKKGAA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 14 E= 2.0e-012 0.357143 0.142857 0.071429 0.428571 0.071429 0.000000 0.142857 0.785714 0.000000 0.000000 0.000000 1.000000 0.071429 0.285714 0.000000 0.642857 0.285714 0.000000 0.000000 0.714286 0.285714 0.142857 0.000000 0.571429 0.000000 0.000000 0.071429 0.928571 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.428571 0.285714 0.071429 0.214286 0.214286 0.142857 0.071429 0.571429 0.357143 0.428571 0.000000 0.214286 0.357143 0.000000 0.500000 0.142857 0.000000 0.000000 0.714286 0.285714 0.571429 0.071429 0.000000 0.357143 0.785714 0.000000 0.000000 0.214286 0.714286 0.000000 0.142857 0.142857 0.142857 0.071429 0.428571 0.357143 0.142857 0.000000 0.500000 0.357143 0.214286 0.071429 0.714286 0.000000 0.714286 0.142857 0.000000 0.142857 0.642857 0.000000 0.285714 0.071429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTTWTGWHTMRGWAAKKGAA MEME-6 regular expression -------------------------------------------------------------------------------- [TA]TT[TC][TA][TA]TG[AT][ACT][TA][CAT][GA][GT][AT][AT]A[GT][GT][GA]A[AG] -------------------------------------------------------------------------------- Time 1877.95 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 width = 48 sites = 3 llr = 168 E-value = 6.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::::::3:::::7:7::::7:::7:a::7:73a7:7:337::73:::: pos.-specific C ::::::77:3:3:::3::333:::a::33:::::::7:33:::::3:: probability G ::77a::::::7:::::::::773::a::::::::3:3::3:::a7a: matrix T aa33:a:3a7a:3a37aa7:733::::7:a37:3a:333:7a37:::a bits 2.6 ** * * * * ** * * * * * * 2.4 ** * * * * ** * * * * * * 2.1 ** * * * * ** * * * * * * 1.8 ** * * * * ** * * * * * * Relative 1.6 ** ** * * *** ** *** ****** **** ** Entropy 1.3 ** ** *** ********* ************* ****** ** (80.9 bits) 1.0 *********** ************************* ****** ** 0.8 *********** ********************************* ** 0.5 ************************************************ 0.3 ************************************************ 0.0 ------------------------------------------------ Multilevel TTGGGTCCTTTGATATTTTATGGACAGTATATAATACAAATTATGGGT consensus TT AT C CT TC CCCTTG CC TA T GTGCCG TA C sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------ chrUn_KI270467v1:2967-34 + 48 1.28e-31 aatatttatt ttgtgtcctttgatattttatgtacagtatataatatgtattatgggt acttt chrUn_KI270467v1:3181-36 + 1 4.28e-29 . ttgggtactttgatattttatggacagtatataatacacagtttgggt actttggtat chr17:36722047-36722547 + 7 4.39e-22 AGGCGG TTTGGTCTTCTCTTTCTTCCCTGGCAGCCTTAATTGCTACTTAAGCGT GGGCCCTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:2967-34 1.3e-31 47_[+7]_5 chrUn_KI270467v1:3181-36 4.3e-29 [+7]_52 chr17:36722047-36722547 4.4e-22 6_[+7]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT width=48 seqs=3 chrUn_KI270467v1:2967-34 ( 48) TTGTGTCCTTTGATATTTTATGTACAGTATATAATATGTATTATGGGT 1 chrUn_KI270467v1:3181-36 ( 1) TTGGGTACTTTGATATTTTATGGACAGTATATAATACACAGTTTGGGT 1 chr17:36722047-36722547 ( 7) TTTGGTCTTCTCTTTCTTCCCTGGCAGCCTTAATTGCTACTTAAGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 48 n= 31800 bayes= 13.0306 E= 6.5e-002 -823 -823 -823 261 -823 -823 -823 261 -823 -823 98 103 -823 -823 98 103 -823 -823 157 -823 -823 -823 -823 261 103 98 -823 -823 -823 98 -823 103 -823 -823 -823 261 -823 -2 -823 203 -823 -823 -823 261 -823 -2 98 -823 203 -823 -823 103 -823 -823 -823 261 203 -823 -823 103 -823 -2 -823 203 -823 -823 -823 261 -823 -823 -823 261 -823 -2 -823 203 203 -2 -823 -823 -823 -2 -823 203 -823 -823 98 103 -823 -823 98 103 203 -823 -2 -823 -823 157 -823 -823 261 -823 -823 -823 -823 -823 157 -823 -823 -2 -823 203 203 -2 -823 -823 -823 -823 -823 261 203 -823 -823 103 103 -823 -823 203 261 -823 -823 -823 203 -823 -823 103 -823 -823 -823 261 203 -823 -2 -823 -823 98 -823 103 103 -823 -2 103 103 -2 -823 103 203 -2 -823 -823 -823 -823 -2 203 -823 -823 -823 261 203 -823 -823 103 103 -823 -823 203 -823 -823 157 -823 -823 -2 98 -823 -823 -823 157 -823 -823 -823 -823 261 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 48 nsites= 3 E= 6.5e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.666667 0.333333 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.666667 0.333333 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.000000 0.333333 0.333333 0.000000 0.000000 0.666667 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.333333 0.333333 0.000000 0.333333 0.333333 0.333333 0.333333 0.000000 0.333333 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.000000 0.333333 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGGTCCTYTSWTWYTTYMYGGRCAGYMTWWAWTRCDHMKTWWGSGT MEME-7 regular expression -------------------------------------------------------------------------------- TT[GT][GT]GT[CA][CT]T[TC]T[GC][AT]T[AT][TC]TT[TC][AC][TC][GT][GT][AG]CAG[TC][AC]T[AT][TA]A[AT]T[AG][CT][AGT][ACT][AC][TG]T[AT][TA]G[GC]GT -------------------------------------------------------------------------------- Time 2161.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GRCCTGCGCCCACTGTCTGGCA MEME-8 width = 22 sites = 6 llr = 144 E-value = 3.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRCCTGCGCCCACTGTCTGGCA MEME-8 Description -------------------------------------------------------------------------------- Simplified A :3:::::::2:a:::2:22::8 pos.-specific C ::aa::7:a8a:a:2:a:::a: probability G 85:::a2a::::::8:::8a:2 matrix T 22::a:2::::::a:8:8:::: bits 2.6 * * * 2.4 * * * 2.1 * * * * * 1.8 * * * * * * Relative 1.6 **** ** **** *** *** Entropy 1.3 **** ** **** *** *** (34.6 bits) 1.0 * **** *************** 0.8 * **** *************** 0.5 ********************** 0.3 ********************** 0.0 ---------------------- Multilevel GGCCTGCGCCCACTGTCTGGCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCCTGCGCCCACTGTCTGGCA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr17:60887067-60887567 + 67 2.51e-13 tgcacccact gacctgcgcccactgtctggca ctccctagtg chr13:19109302-19109802 + 77 7.70e-13 cgcacccact ggcctgcgcccactgtctggca ct chr10:35858585-35859085 - 7 1.76e-12 CGCACCCACT GGCCTGTGCCCACTGTCTGGCA CTCCCT chr11:102747042-10274754 + 79 2.88e-12 cgcacccact gacctgggcccactgtctggca chr14:30690442-30690942 + 51 1.35e-11 cacacacact ggcctgcgcccactgtctggcg ctccctagtg chr12:107321068-10732156 - 62 2.32e-10 CGCCCGCTTG TTCCTGCGCACACTCACAAGCA CACTTACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCCTGCGCCCACTGTCTGGCA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:60887067-60887567 2.5e-13 66_[+8]_12 chr13:19109302-19109802 7.7e-13 76_[+8]_2 chr10:35858585-35859085 1.8e-12 6_[-8]_72 chr11:102747042-10274754 2.9e-12 78_[+8] chr14:30690442-30690942 1.4e-11 50_[+8]_28 chr12:107321068-10732156 2.3e-10 61_[-8]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCCTGCGCCCACTGTCTGGCA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRCCTGCGCCCACTGTCTGGCA width=22 seqs=6 chr17:60887067-60887567 ( 67) GACCTGCGCCCACTGTCTGGCA 1 chr13:19109302-19109802 ( 77) GGCCTGCGCCCACTGTCTGGCA 1 chr10:35858585-35859085 ( 7) GGCCTGTGCCCACTGTCTGGCA 1 chr11:102747042-10274754 ( 79) GACCTGGGCCCACTGTCTGGCA 1 chr14:30690442-30690942 ( 51) GGCCTGCGCCCACTGTCTGGCG 1 chr12:107321068-10732156 ( 62) TTCCTGCGCACACTCACAAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCCTGCGCCCACTGTCTGGCA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.6064 E= 3.5e-002 -923 -923 130 3 103 -923 57 3 -923 157 -923 -923 -923 157 -923 -923 -923 -923 -923 262 -923 -923 157 -923 -923 98 -101 3 -923 -923 157 -923 -923 157 -923 -923 3 130 -923 -923 -923 157 -923 -923 262 -923 -923 -923 -923 157 -923 -923 -923 -923 -923 262 -923 -101 130 -923 3 -923 -923 235 -923 157 -923 -923 3 -923 -923 235 3 -923 130 -923 -923 -923 157 -923 -923 157 -923 -923 235 -923 -101 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCCTGCGCCCACTGTCTGGCA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 6 E= 3.5e-002 0.000000 0.000000 0.833333 0.166667 0.333333 0.000000 0.500000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.166667 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCCTGCGCCCACTGTCTGGCA MEME-8 regular expression -------------------------------------------------------------------------------- G[GA]CCTGCGCCCACTGTCTGGCA -------------------------------------------------------------------------------- Time 2447.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCAHGTGCRTGTDTGTGCGTG MEME-9 width = 22 sites = 7 llr = 149 E-value = 5.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCAHGTGCRTGTDTGTGCGTG MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::73::1:6:3:3::1113:: pos.-specific C 1:61311:91::::1:::6::: probability G :a11:9:9:3:7:4:a:917:a matrix T 9:3:4:9:1:a:a39:9:1:a: bits 2.6 * * * 2.4 * * * 2.1 * * * * 1.8 * * * * * * * Relative 1.6 ** * * * *** ** Entropy 1.3 ** * * * *** ** (30.6 bits) 1.0 ** * **** *** **** *** 0.8 ** ********** **** *** 0.5 ****************** *** 0.3 ********************** 0.0 ---------------------- Multilevel TGCATGTGCATGTGTGTGCGTG consensus T A G A A A sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAHGTGCRTGTDTGTGCGTG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr20:63387366-63387866 - 46 8.02e-14 GGCGTGCACA TGCATGTGCATATATGTGCGTG TGTGGGTGTG chr17:79620046-79620546 - 58 9.76e-13 TGTGCGTGCG TGTATGTACATATTTGTGCATG TGCGTGTGTG chr8:142469334-142469834 + 10 5.05e-12 GTGAGTGTA TGCACgtgcatgtgtgtgaatg tgtgtgcatg chr7:191577-192077 - 7 2.04e-10 TGCGTGTGTA TGCCTGTGTGTGTTTGTGTGTG CGTCTG chr2:221570900-221571400 - 17 3.44e-10 TGCGCGCGCG TGCAACTGCGTGTATGTAGGTG CGCGAATGCC chr19:39157917-39158417 + 7 1.71e-09 tgagtg cgtgcgtgcatgtgtgagcgtg cgtgtgtgca chr3:11846678-11847178 - 22 3.51e-09 TCTTGCGTCT TGGAAGCGCCTGTGCGTGCGTG GGGCGTAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAHGTGCRTGTDTGTGCGTG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:63387366-63387866 8e-14 45_[-9]_33 chr17:79620046-79620546 9.8e-13 57_[-9]_21 chr8:142469334-142469834 5.1e-12 9_[+9]_69 chr7:191577-192077 2e-10 6_[-9]_72 chr2:221570900-221571400 3.4e-10 16_[-9]_62 chr19:39157917-39158417 1.7e-09 6_[+9]_72 chr3:11846678-11847178 3.5e-09 21_[-9]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAHGTGCRTGTDTGTGCGTG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCAHGTGCRTGTDTGTGCGTG width=22 seqs=7 chr20:63387366-63387866 ( 46) TGCATGTGCATATATGTGCGTG 1 chr17:79620046-79620546 ( 58) TGTATGTACATATTTGTGCATG 1 chr8:142469334-142469834 ( 10) TGCACGTGCATGTGTGTGAATG 1 chr7:191577-192077 ( 7) TGCCTGTGTGTGTTTGTGTGTG 1 chr2:221570900-221571400 ( 17) TGCAACTGCGTGTATGTAGGTG 1 chr19:39157917-39158417 ( 7) CGTGCGTGCATGTGTGAGCGTG 1 chr3:11846678-11847178 ( 22) TGGAAGCGCCTGTGCGTGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAHGTGCRTGTDTGTGCGTG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.3308 E= 5.3e+000 -945 -124 -945 239 -945 -945 157 -945 -945 76 -124 81 213 -124 -124 -945 81 -24 -945 140 -945 -124 134 -945 -945 -124 -945 239 -19 -945 134 -945 -945 134 -945 -19 181 -124 -24 -945 -945 -945 -945 262 81 -945 108 -945 -945 -945 -945 262 81 -945 35 81 -945 -124 -945 239 -945 -945 157 -945 -19 -945 -945 239 -19 -945 134 -945 -19 76 -124 -19 81 -945 108 -945 -945 -945 -945 262 -945 -945 157 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAHGTGCRTGTDTGTGCGTG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 7 E= 5.3e+000 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.142857 0.285714 0.714286 0.142857 0.142857 0.000000 0.285714 0.285714 0.000000 0.428571 0.000000 0.142857 0.857143 0.000000 0.000000 0.142857 0.000000 0.857143 0.142857 0.000000 0.857143 0.000000 0.000000 0.857143 0.000000 0.142857 0.571429 0.142857 0.285714 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.428571 0.285714 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.142857 0.000000 0.857143 0.000000 0.142857 0.571429 0.142857 0.142857 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAHGTGCRTGTDTGTGCGTG MEME-9 regular expression -------------------------------------------------------------------------------- TG[CT]A[TAC]GTGC[AG]T[GA]T[GAT]TGTGC[GA]TG -------------------------------------------------------------------------------- Time 2732.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TSCCTTTCMBAG MEME-10 width = 12 sites = 15 llr = 189 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSCCTTTCMBAG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 11::1:::4:81 pos.-specific C :6aa:1:a6322 probability G :3:::::::3:7 matrix T 9:::99a::4:: bits 2.6 * 2.4 * * * 2.1 * *** 1.8 * *** Relative 1.6 * ****** * Entropy 1.3 * ****** * (18.2 bits) 1.0 * ******* * 0.8 * ******* * 0.5 ************ 0.3 ************ 0.0 ------------ Multilevel TCCCTTTCCTAG consensus G AGCC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCCTTTCMBAG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr8:91197435-91197935 - 1 4.08e-08 GTCAGGGAGT TCCCTTTCCTAG chr6:157221209-157221709 + 28 4.08e-08 GCAGCCGTTC TCCCTTTCCTAG ACGGCAGGGG chr12:80149611-80150111 - 35 4.08e-08 GTCAGGGAGC TCCCTTTCCTAG TCAGCCGGCA chr13:39006437-39006937 - 6 1.09e-07 GTCAGGGAGT TCCCTTTCAGAG TCAAA chr17:38751983-38752483 + 17 1.36e-07 GCTTCCAAAC TCCCTTTCACAG CTGAACCCCT chr4:120256340-120256840 - 6 1.93e-07 GTCAGGGAGT TCCCTTTCCGAG TCAAA chr14:91836176-91836676 + 79 4.99e-07 CTCGAGGTCC TGCCTTTCCCAG GGcctcccct chr14:93114906-93115406 + 36 8.22e-07 CCAACTCTCT TCCCTTTCAGAA AGGTCTGCAT chr12:57941427-57941927 + 9 1.01e-06 AGGGAGGT TACCTTTCCCAG TCTCGCTCTG chr17:45783300-45783800 + 8 1.82e-06 CGCCGTC TCCCTTTCATCC TGGGGCTCCC chr20:62303203-62303703 - 18 2.61e-06 CACGCCGGGC TGCCTTTCCGCG TTTGCCCCGC chr3:184525694-184526194 - 48 2.85e-06 AGCCCTGACC TGCCTTTCATCC CGCTGATGCT chr6:31403765-31404265 - 64 3.20e-06 GGCACTCGAA TGCCATTCACAG GAGCAGCCCC chr17:46266952-46267452 + 32 3.60e-06 CCGCCCCGCG AGCCTTTCCGAG TCCCGGAGAA chrUn_GL000220v1:119674- + 89 5.11e-06 CACGCGGAAC TCCCTCTCCTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCCTTTCMBAG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:91197435-91197935 4.1e-08 [-10]_88 chr6:157221209-157221709 4.1e-08 27_[+10]_61 chr12:80149611-80150111 4.1e-08 34_[-10]_54 chr13:39006437-39006937 1.1e-07 5_[-10]_83 chr17:38751983-38752483 1.4e-07 16_[+10]_72 chr4:120256340-120256840 1.9e-07 5_[-10]_83 chr14:91836176-91836676 5e-07 78_[+10]_10 chr14:93114906-93115406 8.2e-07 35_[+10]_53 chr12:57941427-57941927 1e-06 8_[+10]_80 chr17:45783300-45783800 1.8e-06 7_[+10]_81 chr20:62303203-62303703 2.6e-06 17_[-10]_71 chr3:184525694-184526194 2.9e-06 47_[-10]_41 chr6:31403765-31404265 3.2e-06 63_[-10]_25 chr17:46266952-46267452 3.6e-06 31_[+10]_57 chrUn_GL000220v1:119674- 5.1e-06 88_[+10] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCCTTTCMBAG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSCCTTTCMBAG width=12 seqs=15 chr8:91197435-91197935 ( 1) TCCCTTTCCTAG 1 chr6:157221209-157221709 ( 28) TCCCTTTCCTAG 1 chr12:80149611-80150111 ( 35) TCCCTTTCCTAG 1 chr13:39006437-39006937 ( 6) TCCCTTTCAGAG 1 chr17:38751983-38752483 ( 17) TCCCTTTCACAG 1 chr4:120256340-120256840 ( 6) TCCCTTTCCGAG 1 chr14:91836176-91836676 ( 79) TGCCTTTCCCAG 1 chr14:93114906-93115406 ( 36) TCCCTTTCAGAA 1 chr12:57941427-57941927 ( 9) TACCTTTCCCAG 1 chr17:45783300-45783800 ( 8) TCCCTTTCATCC 1 chr20:62303203-62303703 ( 18) TGCCTTTCCGCG 1 chr3:184525694-184526194 ( 48) TGCCTTTCATCC 1 chr6:31403765-31404265 ( 64) TGCCATTCACAG 1 chr17:46266952-46267452 ( 32) AGCCTTTCCGAG 1 chrUn_GL000220v1:119674- ( 89) TCCCTCTCCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCCTTTCMBAG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 12.4716 E= 1.5e+003 -129 -1055 -1055 252 -129 83 -2 -1055 -1055 157 -1055 -1055 -1055 157 -1055 -1055 -129 -1055 -1055 252 -1055 -233 -1055 252 -1055 -1055 -1055 262 -1055 157 -1055 -1055 130 83 -1055 -1055 -1055 -34 -2 130 230 -75 -1055 -1055 -129 -75 112 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCCTTTCMBAG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 15 E= 1.5e+003 0.066667 0.000000 0.000000 0.933333 0.066667 0.600000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.066667 0.000000 0.000000 0.933333 0.000000 0.066667 0.000000 0.933333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.266667 0.333333 0.400000 0.800000 0.200000 0.000000 0.000000 0.066667 0.200000 0.733333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCCTTTCMBAG MEME-10 regular expression -------------------------------------------------------------------------------- T[CG]CCTTTC[CA][TGC][AC][GC] -------------------------------------------------------------------------------- Time 3016.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:194136950-194137450 1.65e-04 66_[+6(3.88e-08)]_12 chr6:31862725-31863225 8.88e-01 100 chr5:77210007-77210507 8.67e-02 44_[-5(6.74e-07)]_34 chr14:93788665-93789165 2.83e-01 58_[+1(8.29e-05)]_15 chr19:53866090-53866590 8.00e-01 100 chr8:143733117-143733617 6.27e-01 100 chr12:80149611-80150111 3.87e-21 34_[-10(4.08e-08)]_3_[+2(5.42e-25)]_\ 8 chr3:44712356-44712856 5.30e-02 100 chr7:5420981-5421481 2.54e-01 7_[-5(5.93e-06)]_71 chr20:25077497-25077997 5.07e-01 100 chr6:33391837-33392337 5.62e-01 100 chrX:8730991-8731491 1.46e-06 49_[+1(2.61e-08)]_24 chr14:104461724-10446222 5.06e-01 23_[-5(5.76e-05)]_55 chr14:92923233-92923733 8.11e-01 100 chr17:35795415-35795915 1.37e-01 20_[-5(5.93e-06)]_58 chr17:79620046-79620546 1.45e-22 4_[+4(1.37e-12)]_[+1(2.27e-12)]_4_\ [-9(9.76e-13)]_21 chr13:99985058-99985558 4.27e-01 100 chr22:23768202-23768702 9.19e-01 100 chrX:2691335-2691835 5.14e-01 32_[+3(7.99e-05)]_37 chr6:31497602-31498102 2.32e-01 100 chr11:518768-519268 3.47e-01 100 chr3:44477502-44478002 2.97e-01 74_[+5(3.05e-05)]_4 chr17:1649335-1649835 2.01e-01 1_[+2(1.49e-05)]_56 chr17:38510071-38510571 1.10e-01 32_[-5(1.57e-06)]_46 chr3:46892209-46892709 9.06e-08 [+4(3.55e-08)]_47_[+4(2.94e-07)]_9 chr19:54189258-54189758 4.95e-01 100 chr6:33249001-33249501 2.06e-01 100 chr1:15848345-15848845 5.23e-02 44_[-2(5.35e-05)]_13 chr16:528240-528740 3.53e-01 44_[-5(1.23e-05)]_34 chr8:737524-738024 7.05e-01 100 chr12:66764-67264 4.14e-01 34_[-5(3.60e-05)]_44 chr12:122078316-12207881 1.04e-02 35_[-5(1.82e-09)]_43 chr1:26529903-26530403 8.12e-07 33_[-1(1.57e-07)]_40 chr20:1803411-1803911 6.02e-01 100 chr6:29976977-29977477 5.36e-01 100 chr17:83078726-83079226 6.26e-01 100 chr2:176177906-176178406 4.84e-01 100 chr13:19109302-19109802 6.83e-39 1_[+2(1.34e-25)]_1_[+3(1.48e-16)]_\ [+8(7.70e-13)]_2 chr19:50328429-50328929 1.12e-01 5_[+4(7.56e-06)]_73 chr14:93207295-93207795 4.60e-01 100 chr6:33080556-33081056 6.21e-01 100 chr15:31392106-31392606 7.44e-01 100 chr9:133459791-133460291 6.15e-01 100 chr1:210251210-210251710 8.26e-01 100 chr6:31403765-31404265 4.42e-02 63_[-10(3.20e-06)]_25 chr17:38751983-38752483 1.59e-02 16_[+10(1.36e-07)]_49_\ [+10(7.41e-05)]_11 chr11:119030476-11903097 5.96e-01 48_[+6(3.09e-05)]_30 chr19:39833260-39833760 1.32e-01 53_[-5(6.62e-06)]_25 chr6:28589264-28589764 4.20e-01 100 chr6:30060953-30061453 2.26e-02 18_[-7(4.49e-05)]_34 chr18:79069283-79069783 8.60e-01 100 chr15:29821870-29822370 2.25e-01 100 chr20:57264091-57264591 1.34e-01 65_[+6(5.74e-05)]_13 chr14:37592315-37592815 7.27e-01 100 chr21:37367771-37368271 2.93e-01 [+5(4.95e-05)]_78 chr3:196500644-196501144 5.85e-05 33_[+6(4.20e-10)]_45 chr1:120340824-120341324 9.90e-01 100 chr12:12561454-12561954 2.88e-01 17_[-2(7.45e-05)]_40 chr2:61537063-61537563 5.27e-02 29_[+5(4.23e-05)]_49 chr5:90668180-90668680 1.40e-26 13_[+6(8.12e-12)]_2_[+2(2.25e-25)]_\ 20 chr6:33427600-33428100 3.69e-01 1_[+5(5.93e-06)]_77 chr1:44616920-44617420 2.53e-01 100 chrUn_GL000219v1:42366-4 6.05e-02 15_[+5(1.23e-05)]_63 chr1:52551477-52551977 4.64e-24 10_[+1(1.33e-17)]_63 chr19:48716682-48717182 4.72e-01 100 chr8:731176-731676 6.88e-01 100 chr8:1892412-1892912 5.99e-18 17_[+9(2.09e-11)]_1_[-1(1.57e-08)]_\ [+6(2.81e-05)]_11 chr6:32195918-32196418 2.79e-01 100 chr9:14277096-14277596 3.43e-26 22_[+4(1.75e-09)]_[+1(5.18e-16)]_\ [+6(1.16e-08)]_7 chr15:22664736-22665236 9.43e-01 100 chr17:45948959-45949459 8.85e-01 100 chr20:63387366-63387866 9.91e-23 4_[+1(3.90e-13)]_14_[-9(8.02e-14)]_\ 3_[+1(1.25e-10)]_3 chr6:31827577-31828077 6.05e-01 100 chr7:193022-193522 9.88e-01 100 chr19:56477403-56477903 5.14e-02 9_[-7(8.27e-05)]_43 chr7:141737992-141738492 1.52e-01 100 chrUn_KI270467v1:3181-36 5.92e-24 [+7(4.28e-29)]_8_[+6(1.26e-09)]_22 chr8:143609623-143610123 6.52e-02 29_[-5(3.91e-05)]_49 chr22:36856331-36856831 7.79e-01 100 chr21:36130151-36130651 8.03e-02 9_[+5(3.76e-06)]_40_[+5(1.79e-06)]_\ 7 chr14:30690442-30690942 7.06e-18 19_[+3(4.22e-16)]_[+8(1.35e-11)]_28 chr19:3666412-3666912 2.13e-16 14_[+4(7.08e-09)]_14_[+1(8.15e-12)]_\ 23 chr8:738020-738520 3.73e-01 100 chrUn_GL000220v1:119674- 9.60e-02 88_[+10(5.11e-06)] chr1:40316774-40317274 4.17e-01 50_[-8(6.53e-05)]_28 chr16:4371970-4372470 1.86e-02 100 chr22:20956943-20957443 7.19e-01 100 chr3:44510344-44510844 3.63e-01 100 chr3:107697798-107698298 1.80e-30 5_[+2(4.33e-25)]_1_[+3(3.90e-17)]_\ 20 chr17:60887067-60887567 1.35e-16 35_[+3(1.01e-12)]_[+8(2.51e-13)]_12 chr7:27192918-27193418 1.60e-02 100 chr17:41527863-41528363 7.61e-01 100 chr20:64101966-64102466 5.42e-01 18_[-2(2.80e-05)]_39 chr18:67516325-67516825 7.01e-01 100 chr18:77421553-77422053 6.90e-24 6_[+6(8.12e-12)]_1_[+2(1.53e-21)]_\ 28 chr6:28814047-28814547 1.45e-01 44_[-5(7.37e-06)]_34 chrX:318714-319214 5.55e-01 100 chrX:155881161-155881661 1.45e-01 100 chr6:157221209-157221709 6.93e-03 27_[+10(4.08e-08)]_61 chr6:169790204-169790704 4.03e-01 100 chr21:33491292-33491792 3.46e-01 100 chr19:34365269-34365769 8.89e-01 100 chr17:81393112-81393612 3.50e-01 100 chr17:45317444-45317944 3.45e-01 100 chr16:14632759-14633259 9.78e-01 100 chr1_KI270713v1_random:2 7.63e-02 100 chr5:93583763-93584263 1.39e-01 19_[+5(1.01e-05)]_59 chr11:534581-535081 5.07e-02 100 chr17:17042908-17043408 9.15e-02 100 chr11:118997894-11899839 9.56e-01 100 chr7:50782767-50783267 4.70e-06 35_[+5(5.62e-10)]_20_[+4(7.57e-07)]_\ 1 chr17:36722047-36722547 7.19e-16 6_[+7(4.39e-22)]_46 chr12:4270831-4271331 2.74e-01 100 chr11:119067453-11906795 4.68e-01 100 chr17:38747538-38748038 5.48e-01 20_[-5(3.91e-05)]_58 chr1:243255888-243256388 8.47e-01 100 chr11:2991587-2992087 8.49e-01 100 chr20:62303203-62303703 1.22e-04 17_[-10(2.61e-06)]_5_[-4(7.03e-05)]_\ 44 chr6:31821596-31822096 4.34e-02 100 chr1:2546543-2547043 9.96e-01 100 chr17:45490414-45490914 7.11e-01 100 chr2:128317654-128318154 5.59e-02 76_[-5(6.62e-06)]_2 chr16:527368-527868 1.78e-01 4_[-5(7.37e-06)]_74 chr6:30686721-30687221 1.97e-01 100 chr5:71455414-71455914 3.27e-02 77_[-5(7.37e-06)]_1 chr6:32154067-32154567 5.38e-01 100 chr5:69369475-69369975 9.80e-01 100 chrX:41330367-41330867 4.45e-01 100 chr15:30195944-30196444 7.49e-01 100 chr18:8706447-8706947 9.56e-01 100 chr20:64255756-64256256 3.72e-01 100 chr16:2135009-2135509 9.97e-01 100 chr5:69217895-69218395 3.10e-01 100 chr6:30742733-30743233 1.63e-01 74_[-6(4.83e-05)]_4 chr3:197510039-197510539 8.77e-01 100 chr19:47228244-47228744 1.09e-02 12_[-2(3.06e-05)]_17_[+6(3.82e-05)]_\ 6 chr18:50560089-50560589 9.10e-01 100 chr20:3777863-3778363 4.65e-01 100 chr14:94026163-94026663 4.06e-01 39_[+5(4.23e-05)]_39 chr22:23767990-23768490 4.05e-01 72_[-5(6.68e-05)]_6 chr17:80290128-80290628 2.17e-19 9_[-1(1.39e-12)]_8_[-4(4.54e-08)]_1_\ [-1(2.88e-12)]_6 chr17:38572788-38573288 9.21e-01 100 chr17:1180137-1180637 8.90e-01 100 chr1:6615122-6615622 4.08e-02 47_[+5(2.31e-06)]_31 chr5:136192759-136193259 2.05e-01 59_[+5(3.60e-05)]_19 chr1:154328353-154328853 8.66e-01 100 chrUn_GL000219v1:99664-1 9.32e-01 100 chr16:4371626-4372126 2.70e-01 100 chr19:40602249-40602749 9.05e-01 100 chrUn_GL000195v1:32549-3 2.20e-03 75_[-4(8.66e-05)]_3 chr15:22979677-22980177 3.92e-01 8_[-6(8.73e-05)]_70 chr6:31902163-31902663 3.30e-02 38_[-4(5.16e-05)]_40 chr5:88142225-88142725 6.54e-20 36_[+1(1.15e-13)]_37 chr17:45783502-45784002 9.75e-01 100 chr6:33425677-33426177 7.32e-01 100 chr16:401421-401921 6.51e-01 100 chrX:1392275-1392775 5.61e-01 [+2(3.92e-05)]_57 chr18:22171955-22172455 9.24e-01 100 chr21:17612576-17613076 8.93e-01 100 chr15:63043559-63044059 8.71e-01 100 chr11:57459706-57460206 7.02e-07 34_[+5(2.96e-06)]_44 chr17:38705698-38706198 9.90e-02 100 chr7:155810247-155810747 4.74e-03 67_[+4(1.63e-06)]_11 chr12:132490673-13249117 7.22e-01 100 chr18:50559576-50560076 6.79e-01 100 chr2:233354900-233355400 5.95e-01 100 chr19:18433213-18433713 9.56e-01 100 chr17:36936546-36937046 8.93e-01 100 chr15:31325759-31326259 8.80e-01 100 chr11:27722415-27722915 8.38e-01 100 chr15:32030369-32030869 5.52e-01 100 chr7:141702140-141702640 7.17e-07 16_[-4(3.33e-09)]_29_[+9(2.11e-05)]_\ 11 chr12:49090115-49090615 5.81e-01 100 chr5:70401273-70401773 8.53e-01 100 chr15:29571031-29571531 4.52e-01 100 chr17:8123212-8123712 5.68e-03 100 chr17:45585994-45586494 7.97e-01 100 chr6:28863959-28864459 2.54e-01 100 chr8:91197435-91197935 1.45e-34 [-10(4.08e-08)]_3_[+2(2.25e-25)]_1_\ [+3(1.01e-17)]_10 chr6:33428100-33428600 3.17e-01 100 chr15:96331672-96332172 2.52e-04 30_[-6(4.14e-08)]_48 chrUn_KI270467v1:2967-34 3.30e-25 47_[+7(1.28e-31)]_5 chr5:1344965-1345465 9.54e-02 100 chr2:241881328-241881828 3.73e-23 21_[-4(5.79e-06)]_24_[-1(6.76e-18)]_\ 6 chr14:93788334-93788834 1.13e-01 100 chr11:575504-576004 6.85e-01 100 chr3:197664657-197665157 6.01e-09 4_[-1(1.46e-08)]_17_[-4(4.54e-08)]_\ 30 chr19:39157917-39158417 1.01e-17 8_[-1(8.39e-11)]_3_[+9(2.39e-08)]_4_\ [-1(1.97e-11)]_9 chr16:4316294-4316794 6.94e-01 100 chr8:37700865-37701365 1.13e-02 100 chr16:426507-427007 3.56e-02 1_[-5(8.87e-05)]_77 chr19:40601312-40601812 4.64e-01 100 chr9:129665367-129665867 3.00e-02 11_[-5(1.19e-06)]_67 chr3:125766330-125766830 6.60e-02 22_[+5(2.96e-06)]_56 chrX:139194568-139195068 4.99e-01 76_[-8(8.61e-05)]_2 chr3:197554807-197555307 6.73e-01 100 chr6:31971967-31972467 8.54e-01 100 chr1:17439745-17440245 4.96e-01 100 chr5:70400902-70401402 8.44e-01 100 chr19:42270593-42271093 5.97e-15 23_[-4(1.27e-06)]_1_[-1(2.27e-12)]_\ 27 chr8:7221701-7222201 1.19e-01 54_[-5(5.93e-06)]_24 chr11:518564-519064 4.58e-01 100 chr13:39006437-39006937 8.01e-31 5_[-10(1.09e-07)]_3_[+2(3.49e-24)]_\ 1_[+3(3.35e-17)]_5 chr1:2229376-2229876 7.70e-02 100 chr17:46267152-46267652 7.54e-01 100 chr13:99984853-99985353 3.79e-01 100 chr12:104559-105059 1.37e-03 48_[+5(1.19e-06)]_30 chr15:22979205-22979705 9.38e-01 100 chr7:93591296-93591796 2.11e-23 31_[+6(9.39e-12)]_2_[+2(2.25e-25)]_\ 2 chr17:38606180-38606680 2.08e-01 44_[+5(4.74e-06)]_34 chr6:29633049-29633549 1.07e-01 59_[-10(2.14e-05)]_29 chr15:31328048-31328548 2.28e-01 63_[+5(7.72e-05)]_15 chr6:33417967-33418467 4.37e-01 100 chr16:73055441-73055941 4.15e-24 40_[+4(2.43e-08)]_[+1(7.90e-17)]_11 chr1:2230756-2231256 1.48e-20 7_[-1(2.28e-13)]_66 chr8:1973187-1973687 6.36e-05 11_[-6(5.03e-08)]_67 chr17:38799211-38799711 1.12e-01 26_[-5(2.04e-06)]_52 chr11:3057299-3057799 9.50e-01 100 chr17:38673873-38674373 1.19e-03 52_[+5(4.09e-09)]_26 chr17:38749219-38749719 9.26e-01 100 chr5:523781-524281 4.61e-01 100 chr14:94174360-94174860 9.97e-01 100 chr19:38319718-38320218 9.30e-01 100 chr6:30717236-30717736 5.87e-04 4_[+6(4.06e-09)]_74 chr17:37489229-37489729 9.04e-01 100 chr3:187741404-187741904 9.09e-01 100 chr1:243254808-243255308 4.01e-01 100 chr18:79068997-79069497 3.48e-01 34_[+3(7.73e-05)]_35 chr14:93333069-93333569 2.98e-03 43_[+6(3.14e-09)]_35 chr6:30742344-30742844 5.03e-01 100 chr19:41522006-41522506 2.82e-01 72_[+5(7.18e-05)]_6 chr7:150220535-150221035 1.69e-01 100 chr6:28940566-28941066 1.19e-01 48_[-5(2.57e-05)]_30 chrX:373829-374329 8.65e-01 100 chr2:36356229-36356729 5.61e-01 100 chr2:233353880-233354380 6.45e-02 44_[-4(3.53e-05)]_34 chr19:55062705-55063205 1.16e-01 100 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7.87e-01 100 chr7:76549085-76549585 3.92e-08 6_[-4(2.66e-07)]_23_[+5(4.95e-05)]_\ 27 chr17:45895289-45895789 1.12e-02 40_[+1(9.37e-06)]_33 chr19:53537814-53538314 7.94e-07 8_[-1(2.28e-07)]_40_[-4(1.63e-06)]_\ 3 chr1:243850491-243850991 1.68e-01 2_[+5(6.62e-06)]_49_[+5(9.50e-05)]_\ 5 chr6:32968177-32968677 1.30e-01 18_[-5(1.80e-05)]_60 chr6:28923582-28924082 3.88e-01 100 chr6:31806600-31807100 1.20e-01 100 chr19:39970702-39971202 5.55e-01 100 chr6:30326546-30327046 1.11e-01 34_[+5(5.76e-05)]_44 chr5:69492569-69493069 2.28e-01 100 chr19:53554133-53554633 1.70e-10 22_[-4(5.27e-09)]_32_[-4(8.18e-08)]_\ 2 chr6:28923175-28923675 1.15e-01 60_[+9(3.35e-05)]_18 chr6:169751424-169751924 8.41e-01 100 chr16:14974953-14975453 9.85e-01 100 chr22:23894664-23895164 3.53e-01 100 chr19:34172423-34172923 3.86e-01 2_[-5(5.35e-05)]_76 chr9:133335946-133336446 2.16e-01 100 chr17:38296782-38297282 9.39e-04 24_[+5(1.01e-05)]_1_[-4(2.07e-06)]_\ 31 chr1:26620616-26621116 2.54e-01 100 chr12:12266855-12267355 2.91e-02 47_[+5(2.36e-05)]_31 chr6:30647226-30647726 9.58e-01 100 chr21:32771477-32771977 2.08e-01 100 chr13:114131598-11413209 1.66e-15 21_[+4(7.36e-10)]_15_[+1(1.14e-11)]_\ 15 chr16:4425511-4426011 3.86e-02 67_[-4(1.92e-06)]_11 chr19:36418441-36418941 5.44e-01 100 chr17:36948609-36949109 9.23e-12 27_[+4(7.36e-10)]_51 chr19:34359170-34359670 2.74e-05 24_[+1(2.89e-06)]_18_[+1(1.68e-07)]_\ 4 chr22:24010889-24011389 1.53e-23 1_[+1(6.76e-18)]_7_[+1(4.60e-12)]_3_\ [+1(1.36e-08)]_8 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: surya ********************************************************************************