# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018)
#        host: surya
#        when: Mon Jun 11 07:49:45 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.154 C 0.349 G 0.347 T 0.150


MOTIF BGYGCGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    BGYGCGCG   CGCGCRCV        152         58   3.8e-013   1.0e-008
#         GGCGCGCG   CGCGCGCC         59         20   3.3e-006   9.0e-002
#         TGCGCGCG   CGCGCGCA         36          9   2.4e-005   6.5e-001
#         TGTGCGCG   CGCGCACA         27          7   3.5e-004   9.4e+000
#         CGTGCGCG   CGCGCACG         34         12   6.7e-004   1.8e+001
#         GGTGCGCG   CGCGCACC         30         11   1.9e-003   5.0e+001
#         CGCGCGCG   CGCGCGCG         28         10   2.2e-003   6.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 180 E= 1.0e-008
0.000000 0.305556 0.438889 0.255556
0.000000 0.000000 1.000000 0.000000
0.000000 0.533333 0.000000 0.466667
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CHGGGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CHGGGA     TCCCDG        235        139   1.4e-009   3.7e-005
#           CCGGGA     TCCCGG        108         59   2.8e-005   7.6e-001
#           CAGGGA     TCCCTG         82         50   2.0e-003   5.5e+001
#           CTGGGA     TCCCAG         74         45   3.3e-003   8.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 293 E= 3.7e-005
0.000000 1.000000 0.000000 0.000000
0.296928 0.430034 0.000000 0.273038
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCKTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CGCKTCC    GGAMGCG         82         25   3.3e-009   8.7e-005
#          CGCGTCC    GGACGCG         44         14   3.4e-005   9.0e-001
#          CGCTTCC    GGAAGCG         38         12   1.1e-004   3.0e+000

letter-probability matrix: alength= 4 w= 7 nsites= 85 E= 8.7e-005
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.517647 0.482353
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGGAW DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       AGGAW      WTCCT        138         72   3.3e-007   8.8e-003
#            AGGAA      TTCCT         98         50   1.6e-005   4.3e-001
#            AGGAT      ATCCT         54         28   2.0e-003   5.3e+001

letter-probability matrix: alength= 4 w= 5 nsites= 171 E= 8.8e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.666667 0.000000 0.000000 0.333333


MOTIF AATGCCT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AATGCCT    AGGCATT         23          1   1.2e-006   3.1e-002
#          AATGCCT    AGGCATT         23          1   1.2e-006   3.1e-002

letter-probability matrix: alength= 4 w= 7 nsites= 23 E= 3.1e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 21.92 seconds