******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:62603128-62603628 1.0000 100 chr6:36442932-36443432 1.0000 100 chr9:85940954-85941454 1.0000 100 chr4:6640313-6640813 1.0000 100 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chr12:64222094-64222594 1.0000 100 chr21:42893073-42893573 1.0000 100 chr1:226407686-226408186 1.0000 100 chr1:29237128-29237628 1.0000 100 chr21:38660695-38661195 1.0000 100 chr15:65422334-65422834 1.0000 100 chr21:37073624-37074124 1.0000 100 chr22:19854708-19855208 1.0000 100 chr10:104121697-10412219 1.0000 100 chr17:58007051-58007551 1.0000 100 chr17:4710348-4710848 1.0000 100 chr5:87267434-87267934 1.0000 100 chr3:194134796-194135296 1.0000 100 chr10:73772465-73772965 1.0000 100 chr17:42567078-42567578 1.0000 100 chr16:30011028-30011528 1.0000 100 chr19:46600818-46601318 1.0000 100 chr10:102055888-10205638 1.0000 100 chr10:102399379-10239987 1.0000 100 chr17:74431755-74432255 1.0000 100 chr1:121519204-121519704 1.0000 100 chr1:228486834-228487334 1.0000 100 chr7:42911799-42912299 1.0000 100 chr8:33484756-33485256 1.0000 100 chr5:137754501-137755001 1.0000 100 chr5:50440828-50441328 1.0000 100 chr12:56104320-56104820 1.0000 100 chr1:212858067-212858567 1.0000 100 chr15:69160463-69160963 1.0000 100 chr7:114086013-114086513 1.0000 100 chr1:228486617-228487117 1.0000 100 chr1:155688305-155688805 1.0000 100 chr13:48037629-48038129 1.0000 100 chr1:54886755-54887255 1.0000 100 chr15:65530459-65530959 1.0000 100 chr5:171387366-171387866 1.0000 100 chr1:229558722-229559222 1.0000 100 chr3:48087482-48087982 1.0000 100 chr1:228457387-228457887 1.0000 100 chr21:39183105-39183605 1.0000 100 chr5:134874159-134874659 1.0000 100 chr19:38618625-38619125 1.0000 100 chr5:10307410-10307910 1.0000 100 chr1:236395217-236395717 1.0000 100 chr22:19432150-19432650 1.0000 100 chr7:158704795-158705295 1.0000 100 chr1:228103059-228103559 1.0000 100 chr21:28885049-28885549 1.0000 100 chr18:49486976-49487476 1.0000 100 chr8:38996732-38997232 1.0000 100 chr1:21345629-21346129 1.0000 100 chr12:6778654-6779154 1.0000 100 chr21:39313509-39314009 1.0000 100 chr10:88880377-88880877 1.0000 100 chr16:1971820-1972320 1.0000 100 chr6:108260940-108261440 1.0000 100 chr19:5622598-5623098 1.0000 100 chr18:6729193-6729693 1.0000 100 chr1:244864318-244864818 1.0000 100 chr16:30875099-30875599 1.0000 100 chr21:36069859-36070359 1.0000 100 chr6:53651754-53652254 1.0000 100 chr19:40605344-40605844 1.0000 100 chr3:173395619-173396119 1.0000 100 chr19:12945552-12946052 1.0000 100 chr16:30065002-30065502 1.0000 100 chr19:36687348-36687848 1.0000 100 chr20:36092999-36093499 1.0000 100 chr5:1594284-1594784 1.0000 100 chr19:43754804-43755304 1.0000 100 chr6:40587285-40587785 1.0000 100 chr19:39402428-39402928 1.0000 100 chr1:32650869-32651369 1.0000 100 chr12:6937735-6938235 1.0000 100 chr1:10793917-10794417 1.0000 100 chr21:33324649-33325149 1.0000 100 chr2:11483011-11483511 1.0000 100 chr16:29805426-29805926 1.0000 100 chr6:36680063-36680563 1.0000 100 chr16:21519959-21520459 1.0000 100 chr5:140107506-140108006 1.0000 100 chr10:101830545-10183104 1.0000 100 chr4:24472641-24473141 1.0000 100 chr15:75639740-75640240 1.0000 100 chr8:28401271-28401771 1.0000 100 chr1:16644490-16644990 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.146 C 0.354 G 0.354 T 0.146 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.154 C 0.346 G 0.346 T 0.154 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 width = 31 sites = 77 llr = 1913 E-value = 2.2e-475 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::11111::1111:::::11:::111::::: pos.-specific C 1:1:21213:3:2:212:21212:31313:2 probability G 1a:918:9:9:91a:9:9:819:918:91a: matrix T 8:8:61717:5:6:8:8:7:7:8:6:7:7:8 bits 2.7 2.4 2.2 1.9 * Relative 1.6 * * * * * Entropy 1.3 *** * ** * * ** * ** (35.8 bits) 1.1 **** * ** ******** * ** ***** 0.8 **** ******************* ***** 0.5 ******************************* 0.3 ******************************* 0.0 ------------------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT consensus C C C C C C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr6:36680063-36680563 + 46 1.22e-20 TGCGCGGGCg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt gtgtgtctgt chr1:21345629-21346129 + 58 1.22e-20 CAGCTGCTtg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt gtgcgcgcgc chr3:48087482-48087982 - 65 1.22e-20 TGCAG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GCGCGTGCGT chr6:96924553-96925053 - 50 1.22e-20 TGCGAAAGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GCCTGCGTGC chr10:100228776-10022927 - 19 1.22e-20 TGTGCGTCCG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GCGCGCGCGC chr19:33797013-33797513 + 36 1.22e-20 TGCCGCGCGg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt gtgtgcgcgc chr7:25856800-25857300 - 1 1.22e-20 TGCGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT chr6:134052027-134052527 - 24 1.22e-20 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT ATGCGCGCGC chr6:6007308-6007808 - 60 1.22e-20 CGCGCGCGTT TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GCTCGTGCGG chr12:22335138-22335638 - 1 1.22e-20 CGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT chr1:201435671-201436171 + 47 1.22e-20 CGCGTGCCtg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt gtgAagagag chr3:157437777-157438277 - 62 1.22e-20 TAGGGGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GCGCGCGCGC chr6:40587285-40587785 - 12 3.96e-20 TCCGTGTGTG TGTGTGTGTGCGTGTGTGTGTGTGTGTGTGT GTGGAGCGGA chr12:122021733-12202223 + 2 3.69e-19 g tgtgtgtgtgtgtgtgtgtgtgtgagtgtgt gcgtgtgAGA chr7:114086013-114086513 - 35 4.08e-19 CGGATCTGTG TGTGTGTGTGTGTGTGTGTGTGTGTCTGTGT GTCTGTGTGT chr12:990672-991172 + 64 9.16e-19 GCAGGGGTCg tgtgtgtgtgtgtgtgagtgtgtgtgtgtgt gCAGGG chr1:10793917-10794417 + 51 1.58e-18 cgtgtttgta tgtgtatgcgtgtgtgtgtgtgtgtgtgtgt gCGCGCGCGC chr1:150235808-150236308 - 36 3.41e-18 GAACTGCGGG TGTGTGTGTGTATGTGTGTGTGTATGTGTGT GCGCGCGTGC chr12:6778654-6779154 - 56 6.75e-18 GCGCCGCGCG TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGC GCGCGCGCGT chr1:218345785-218346285 - 65 6.75e-18 GTGCG TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGC GCGCGCTGGG chr19:53979833-53980333 + 26 8.36e-18 GGCGCGCACg tgtgtgtgtgtgtgtgtgtgtgtgtgtgcgc gcgcgcgcgt chr2:45650825-45651325 - 36 9.74e-18 CGTCAGTGTG TGTGAGTGTGTGTGTGTGAGTGTGTGTGTGT GCACGCGCGC chr7:79453539-79454039 + 54 1.79e-17 TGGCAGGGTG Cgtgtgcgtgtgtgtgtgtgtgtgtgtgtgt ACTAGTTCTA chr1:111989984-111990484 + 16 6.95e-17 tgtgtatgag tgtgagtgcgtgtgtgtgtgtctgtgtgtgt ggagaggggc chr3:31980555-31981055 - 66 8.17e-17 TGTG TGTGTGTGTGCGTGCGTGTGTGTATGTGTGT CTGTGTATGT chr8:23714502-23715002 + 53 4.60e-16 cgtgcgtgtg tgtgtgcgtgcgtgtgtgcatgtgtgtgtgt gtgcgcgcgc chr6:139291841-139292341 - 37 9.81e-16 GCCTGTGGCG TGTGTGTGTGTGTGTGTGTGTGCGCGCGCGT GCGTGCACGT chr15:70097512-70098012 - 68 2.00e-15 TG TGTGTGTGTGCGTGCGCGCGTGTGTGTGTGT TGGGTGTGTG chr1:156660165-156660665 + 24 2.00e-15 CGCgtgtgcc tgtgtgtgtgtgtgtgtgtacgcgtgcgtgt gtgtacgcgc chr3:194134796-194135296 - 45 5.63e-15 CGGGAGGATG TGTGTGTGCGTGCGTGTGTGAGTGAGTGTGT GTGCGCGCGC chr9:129436804-129437304 + 19 1.09e-14 tgccttatgt tgtgcgtgtgagtgtgtgtgtgtgtgcgcgc gcgcgcgtgc chr4:24472641-24473141 + 70 3.01e-14 tgtgcgcgcg ggggtgcgtgcgtgtgtgtgtgtgtgtgtgt chr10:116273503-11627400 - 3 5.49e-14 AAAGAGCCCT TGTGCCCGTGTATGTGTGTGTGTGTGTCTGT GT chr2:11483011-11483511 + 56 6.18e-14 tgtgcacgtg tgtgcgtgtgtgagtgcgcgtgtgcgtgcgt gcatgtgtac chr3:134795161-134795661 - 42 7.86e-14 CGCGCGTGGG TGTGGGTGTGCATGTGTGTGTGTGTGTTTAT GGGAGAGGTG chr12:84912556-84913056 + 45 8.85e-14 catgcgtatg tgtgtgtgcgcgcgcgcgtgtgtgtatgtgt gagggtgtgA chr2:169364330-169364830 + 69 1.80e-13 TGGGCGCGCA GGCGCGAGCgtgtgtgtgtgtgtgtgtgtgt g chr12:55830579-55831079 - 48 5.54e-13 TGTGTTGGGG TGTGTGTTTGTGTTTGTGTGTGTGCGCGCGC GCGTGCGCGC chr17:79183433-79183933 + 59 1.33e-12 TGCAAAGAgt ggtgcgtgtgcgtgtgtgagtgcgcgcgtgt gcgcgcgtgt chr7:30135738-30136238 - 32 2.78e-12 CGCGTGTGAG GGTGAGGGTGTGAGCATGTGTGTGTGTGTGT TGGGGTGTAT chr15:65422334-65422834 - 2 3.42e-12 GTTCGCAGAG TCTGGAGTCGTGTGTGTGTGTGTGTGTGTGT G chr18:6729193-6729693 - 59 5.14e-12 TGTGTACCTG TGTGTGCCTGTTTGTGTGCCTGTGTACGTGT GCACGCCTGT chr4:173369650-173370150 - 6 7.70e-12 GGCGCGCGCG TGTGTACGTGTGTGTGCGCGCGTACGCGTGT ATGTT chr15:68820219-68820719 - 4 9.40e-12 CGTGTGCGAG TGTGGGTGCGAGAGTGTGCGTGCGAGTGTGC ACC chr6:1311611-1312111 - 1 2.05e-11 CGCGCGCCGC TGTGGGTTTGCGCGTGTCTGTGAGTGTGCGT chr3:127822700-127823200 - 23 5.79e-11 GTGCACGGTG TGTGTGCGCGCGTGTCCGAGTGTGCGCGCGT GTGCGCGCGC chr1:109100033-109100533 + 42 1.09e-10 GCAGGGTGAG TGTGAGTGGACGCGTGAGTGTGTGAGTGTGC GCGCTTGGAG chr13:113584178-11358467 - 29 1.09e-10 GCCAAGGGAC TGTGTTTGTGCGCGCCTCTGACTGTGTGTGT CCGGAGAGAG chr4:6715904-6716404 + 18 1.86e-10 AGCAAAGgcg tgagcgcgcgtgcgtgcgtgtgcgggtgcgt gagcgtgagc chr8:28401271-28401771 + 57 2.22e-10 agtgcactcg ggtgtatgtgcttgtgtgcacgcgcgcgtgt gtatccgtgt chr3:50337141-50337641 + 42 4.81e-10 CCCGGTCgcg tgcgtgcgtgtacgcgtgtcagtgtgcgcgt gcgcCCGGGC chr22:38202447-38202947 + 51 4.81e-10 gtgcgtgtgt tgtgcttgtgtgtgcgtgtccgcgcgcgCGC TCCCTGGGGC chr20:36092999-36093499 + 19 5.23e-10 TGTCGGTGAA TGTATCTGTGAGAGGGTGTGTCCGAATGTGT AGCAGTGTGT chr10:31928002-31928502 - 69 5.68e-10 G TGTGAGTGCGGGAGAGTGCGCGCGTGTGTGC ACAAGGCGGG chr19:39320205-39320705 - 67 1.40e-09 GAG GGGCTGTGTGCAGGTGTGTGTGTGCGTGGGT TGTGTGCCCA chr20:31514157-31514657 + 28 1.64e-09 cgcgcgcgcg cgtgcgtgcaagcgtgtgtgcgcgcgtgcgc ggcgcgggcT chr19:38224163-38224663 - 66 2.64e-09 GGCG TGTGCGAGTCCAGGTGTGCATGTGGTTGTGT GCACGCGAGA chr20:57092084-57092584 - 55 3.89e-09 ACTGGATGCG TGTGAGTGCGTGAGCATGAGGCTGCGCGCGT GCCCGCGTGT chr17:3892033-3892533 - 50 5.69e-09 GCGTGTGTCA CGTGGACGCGGGAGTGTGCCTGTGTCTGCGT GGGGGGTGCA chr6:84763568-84764068 - 46 8.25e-09 GGCGCGAACC TGAACTTCTGCGAGTCTGTGGGTGTGCGTGC GCGCCGCGTC chr17:74431755-74432255 + 55 1.03e-08 GCCCAGAAAG TGAGTGCGCGTGAGTGTGCGCGCGCCCGCAT GCGGGGGCGT chr12:6689001-6689501 - 54 1.11e-08 GCGCGCGTTC CGTGCGTGTGAGTGTGTGGGTCTGTCTCGCT CCAGAAGTGC chr5:43192442-43192942 + 15 1.28e-08 AGAGCCAGGG CGAGAGCGTGCTCGCGCGTGTGTGCCCGTGT CATGTGTGGT chr13:75480685-75481185 - 2 1.38e-08 ACCGGAGATG GCTTGCTTGCCGTGTGTGTGTGTGTGTGTGT G chr2:86195184-86195684 + 64 1.48e-08 TAAGTGGAGg cgtgcttgcgtgtgtgcgtgcccgcgtccgc gcCCGG chr1:40691629-40692129 + 42 1.59e-08 AGCAGAGGTG TGTGAGTGTGCGGGAGTTTCTGTGCGAGGGT GATAGGGAAG chr16:30011028-30011528 - 48 2.11e-08 CGCGCGCCTG GGTGTGTGCAAGGGTGTGAGCGTGCACACGT GGGCACGGGC chr10:101830545-10183104 - 13 5.90e-08 GCCCCAGGCC CGCGCGCGTGTGTGTGTGTATGGGGAGGCGT GCCGCACGCC chr4:6640313-6640813 + 2 7.69e-08 C CGTACCTGCGCGTGCCTGCGTGCGCGTCCGT GCGGCCGCGA chr1:162561630-162562130 - 20 8.21e-08 GTGCGACGCG TGTCCACGTCTGAGCGCGTGGCCGTGTGTGC GGTGGGGCCA chr7:102363636-102364136 + 3 1.14e-07 cg tgcgtgttcgcgcgtgcgtgcttgcACATGC GCGCCACCTC chr1:234599723-234600223 - 66 1.89e-07 AGAA TGTGCGAGTGCGCGCGAGGGCCCGAGTGCGC CGCCGCCGGC chr17:29390002-29390502 + 27 2.01e-07 CGCGCTCCTG TGAGGGCGCGCGCGCGCGCATGTAGTCGTGT CTCGCGCAGG chr1:219173590-219174090 + 12 2.42e-07 CGCTCCCGGG CGTGCTCCCGCGCGTGCCTGCGTATTTGCGT GCGCGGCCCC chr15:75202458-75202958 + 6 3.28e-07 GTCGG TGTGGGGCTGGGTGCGCGGGCCTGCCTGCGT GCACACGTAT chr1:237042479-237042979 + 31 3.28e-07 GGGAGGAGCG GGCATCACCAAGTGTGTGCAGGTGTGCGTGT TGGGGCGAGG chr19:56567398-56567898 + 3 7.05e-07 GC GGCGGgcgtgagcgtgcgcgtgtggcctggt ggctgtgagt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:36680063-36680563 1.2e-20 45_[+1]_24 chr1:21345629-21346129 1.2e-20 57_[+1]_12 chr3:48087482-48087982 1.2e-20 64_[-1]_5 chr6:96924553-96925053 1.2e-20 49_[-1]_20 chr10:100228776-10022927 1.2e-20 18_[-1]_51 chr19:33797013-33797513 1.2e-20 35_[+1]_34 chr7:25856800-25857300 1.2e-20 [-1]_69 chr6:134052027-134052527 1.2e-20 23_[-1]_46 chr6:6007308-6007808 1.2e-20 59_[-1]_10 chr12:22335138-22335638 1.2e-20 [-1]_69 chr1:201435671-201436171 1.2e-20 46_[+1]_23 chr3:157437777-157438277 1.2e-20 61_[-1]_8 chr6:40587285-40587785 4e-20 11_[-1]_58 chr12:122021733-12202223 3.7e-19 1_[+1]_68 chr7:114086013-114086513 4.1e-19 34_[-1]_35 chr12:990672-991172 9.2e-19 63_[+1]_6 chr1:10793917-10794417 1.6e-18 50_[+1]_19 chr1:150235808-150236308 3.4e-18 35_[-1]_34 chr12:6778654-6779154 6.8e-18 55_[-1]_14 chr1:218345785-218346285 6.8e-18 64_[-1]_5 chr19:53979833-53980333 8.4e-18 25_[+1]_44 chr2:45650825-45651325 9.7e-18 35_[-1]_34 chr7:79453539-79454039 1.8e-17 53_[+1]_16 chr1:111989984-111990484 7e-17 15_[+1]_54 chr3:31980555-31981055 8.2e-17 65_[-1]_4 chr8:23714502-23715002 4.6e-16 52_[+1]_17 chr6:139291841-139292341 9.8e-16 36_[-1]_33 chr15:70097512-70098012 2e-15 67_[-1]_2 chr1:156660165-156660665 2e-15 23_[+1]_46 chr3:194134796-194135296 5.6e-15 44_[-1]_25 chr9:129436804-129437304 1.1e-14 18_[+1]_51 chr4:24472641-24473141 3e-14 69_[+1] chr10:116273503-11627400 5.5e-14 2_[-1]_67 chr2:11483011-11483511 6.2e-14 55_[+1]_14 chr3:134795161-134795661 7.9e-14 41_[-1]_28 chr12:84912556-84913056 8.9e-14 44_[+1]_25 chr2:169364330-169364830 1.8e-13 68_[+1]_1 chr12:55830579-55831079 5.5e-13 47_[-1]_22 chr17:79183433-79183933 1.3e-12 58_[+1]_11 chr7:30135738-30136238 2.8e-12 31_[-1]_38 chr15:65422334-65422834 3.4e-12 1_[-1]_68 chr18:6729193-6729693 5.1e-12 58_[-1]_11 chr4:173369650-173370150 7.7e-12 5_[-1]_64 chr15:68820219-68820719 9.4e-12 3_[-1]_66 chr6:1311611-1312111 2.1e-11 [-1]_69 chr3:127822700-127823200 5.8e-11 22_[-1]_47 chr1:109100033-109100533 1.1e-10 41_[+1]_28 chr13:113584178-11358467 1.1e-10 28_[-1]_41 chr4:6715904-6716404 1.9e-10 17_[+1]_52 chr8:28401271-28401771 2.2e-10 56_[+1]_13 chr3:50337141-50337641 4.8e-10 41_[+1]_28 chr22:38202447-38202947 4.8e-10 50_[+1]_19 chr20:36092999-36093499 5.2e-10 18_[+1]_51 chr10:31928002-31928502 5.7e-10 68_[-1]_1 chr19:39320205-39320705 1.4e-09 66_[-1]_3 chr20:31514157-31514657 1.6e-09 27_[+1]_42 chr19:38224163-38224663 2.6e-09 65_[-1]_4 chr20:57092084-57092584 3.9e-09 54_[-1]_15 chr17:3892033-3892533 5.7e-09 49_[-1]_20 chr6:84763568-84764068 8.3e-09 45_[-1]_24 chr17:74431755-74432255 1e-08 54_[+1]_15 chr12:6689001-6689501 1.1e-08 53_[-1]_16 chr5:43192442-43192942 1.3e-08 14_[+1]_55 chr13:75480685-75481185 1.4e-08 1_[-1]_68 chr2:86195184-86195684 1.5e-08 63_[+1]_6 chr1:40691629-40692129 1.6e-08 41_[+1]_28 chr16:30011028-30011528 2.1e-08 47_[-1]_22 chr10:101830545-10183104 5.9e-08 12_[-1]_57 chr4:6640313-6640813 7.7e-08 1_[+1]_68 chr1:162561630-162562130 8.2e-08 19_[-1]_50 chr7:102363636-102364136 1.1e-07 2_[+1]_67 chr1:234599723-234600223 1.9e-07 65_[-1]_4 chr17:29390002-29390502 2e-07 26_[+1]_43 chr1:219173590-219174090 2.4e-07 11_[+1]_58 chr15:75202458-75202958 3.3e-07 5_[+1]_64 chr1:237042479-237042979 3.3e-07 30_[+1]_39 chr19:56567398-56567898 7e-07 2_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT width=31 seqs=77 chr6:36680063-36680563 ( 46) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:21345629-21346129 ( 58) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr3:48087482-48087982 ( 65) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr6:96924553-96925053 ( 50) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr10:100228776-10022927 ( 19) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr19:33797013-33797513 ( 36) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr7:25856800-25857300 ( 1) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr6:134052027-134052527 ( 24) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr6:6007308-6007808 ( 60) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr12:22335138-22335638 ( 1) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:201435671-201436171 ( 47) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr3:157437777-157438277 ( 62) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1 chr6:40587285-40587785 ( 12) TGTGTGTGTGCGTGTGTGTGTGTGTGTGTGT 1 chr12:122021733-12202223 ( 2) TGTGTGTGTGTGTGTGTGTGTGTGAGTGTGT 1 chr7:114086013-114086513 ( 35) TGTGTGTGTGTGTGTGTGTGTGTGTCTGTGT 1 chr12:990672-991172 ( 64) TGTGTGTGTGTGTGTGAGTGTGTGTGTGTGT 1 chr1:10793917-10794417 ( 51) TGTGTATGCGTGTGTGTGTGTGTGTGTGTGT 1 chr1:150235808-150236308 ( 36) TGTGTGTGTGTATGTGTGTGTGTATGTGTGT 1 chr12:6778654-6779154 ( 56) TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGC 1 chr1:218345785-218346285 ( 65) TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGC 1 chr19:53979833-53980333 ( 26) TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGC 1 chr2:45650825-45651325 ( 36) TGTGAGTGTGTGTGTGTGAGTGTGTGTGTGT 1 chr7:79453539-79454039 ( 54) CGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:111989984-111990484 ( 16) TGTGAGTGCGTGTGTGTGTGTCTGTGTGTGT 1 chr3:31980555-31981055 ( 66) TGTGTGTGTGCGTGCGTGTGTGTATGTGTGT 1 chr8:23714502-23715002 ( 53) TGTGTGCGTGCGTGTGTGCATGTGTGTGTGT 1 chr6:139291841-139292341 ( 37) TGTGTGTGTGTGTGTGTGTGTGCGCGCGCGT 1 chr15:70097512-70098012 ( 68) TGTGTGTGTGCGTGCGCGCGTGTGTGTGTGT 1 chr1:156660165-156660665 ( 24) TGTGTGTGTGTGTGTGTGTACGCGTGCGTGT 1 chr3:194134796-194135296 ( 45) TGTGTGTGCGTGCGTGTGTGAGTGAGTGTGT 1 chr9:129436804-129437304 ( 19) TGTGCGTGTGAGTGTGTGTGTGTGTGCGCGC 1 chr4:24472641-24473141 ( 70) GGGGTGCGTGCGTGTGTGTGTGTGTGTGTGT 1 chr10:116273503-11627400 ( 3) TGTGCCCGTGTATGTGTGTGTGTGTGTCTGT 1 chr2:11483011-11483511 ( 56) TGTGCGTGTGTGAGTGCGCGTGTGCGTGCGT 1 chr3:134795161-134795661 ( 42) TGTGGGTGTGCATGTGTGTGTGTGTGTTTAT 1 chr12:84912556-84913056 ( 45) TGTGTGTGCGCGCGCGCGTGTGTGTATGTGT 1 chr2:169364330-169364830 ( 69) GGCGCGAGCGTGTGTGTGTGTGTGTGTGTGT 1 chr12:55830579-55831079 ( 48) TGTGTGTTTGTGTTTGTGTGTGTGCGCGCGC 1 chr17:79183433-79183933 ( 59) GGTGCGTGTGCGTGTGTGAGTGCGCGCGTGT 1 chr7:30135738-30136238 ( 32) GGTGAGGGTGTGAGCATGTGTGTGTGTGTGT 1 chr15:65422334-65422834 ( 2) TCTGGAGTCGTGTGTGTGTGTGTGTGTGTGT 1 chr18:6729193-6729693 ( 59) TGTGTGCCTGTTTGTGTGCCTGTGTACGTGT 1 chr4:173369650-173370150 ( 6) TGTGTACGTGTGTGTGCGCGCGTACGCGTGT 1 chr15:68820219-68820719 ( 4) TGTGGGTGCGAGAGTGTGCGTGCGAGTGTGC 1 chr6:1311611-1312111 ( 1) TGTGGGTTTGCGCGTGTCTGTGAGTGTGCGT 1 chr3:127822700-127823200 ( 23) TGTGTGCGCGCGTGTCCGAGTGTGCGCGCGT 1 chr1:109100033-109100533 ( 42) TGTGAGTGGACGCGTGAGTGTGTGAGTGTGC 1 chr13:113584178-11358467 ( 29) TGTGTTTGTGCGCGCCTCTGACTGTGTGTGT 1 chr4:6715904-6716404 ( 18) TGAGCGCGCGTGCGTGCGTGTGCGGGTGCGT 1 chr8:28401271-28401771 ( 57) GGTGTATGTGCTTGTGTGCACGCGCGCGTGT 1 chr3:50337141-50337641 ( 42) TGCGTGCGTGTACGCGTGTCAGTGTGCGCGT 1 chr22:38202447-38202947 ( 51) TGTGCTTGTGTGTGCGTGTCCGCGCGCGCGC 1 chr20:36092999-36093499 ( 19) TGTATCTGTGAGAGGGTGTGTCCGAATGTGT 1 chr10:31928002-31928502 ( 69) TGTGAGTGCGGGAGAGTGCGCGCGTGTGTGC 1 chr19:39320205-39320705 ( 67) GGGCTGTGTGCAGGTGTGTGTGTGCGTGGGT 1 chr20:31514157-31514657 ( 28) CGTGCGTGCAAGCGTGTGTGCGCGCGTGCGC 1 chr19:38224163-38224663 ( 66) TGTGCGAGTCCAGGTGTGCATGTGGTTGTGT 1 chr20:57092084-57092584 ( 55) TGTGAGTGCGTGAGCATGAGGCTGCGCGCGT 1 chr17:3892033-3892533 ( 50) CGTGGACGCGGGAGTGTGCCTGTGTCTGCGT 1 chr6:84763568-84764068 ( 46) TGAACTTCTGCGAGTCTGTGGGTGTGCGTGC 1 chr17:74431755-74432255 ( 55) TGAGTGCGCGTGAGTGTGCGCGCGCCCGCAT 1 chr12:6689001-6689501 ( 54) CGTGCGTGTGAGTGTGTGGGTCTGTCTCGCT 1 chr5:43192442-43192942 ( 15) CGAGAGCGTGCTCGCGCGTGTGTGCCCGTGT 1 chr13:75480685-75481185 ( 2) GCTTGCTTGCCGTGTGTGTGTGTGTGTGTGT 1 chr2:86195184-86195684 ( 64) CGTGCTTGCGTGTGTGCGTGCCCGCGTCCGC 1 chr1:40691629-40692129 ( 42) TGTGAGTGTGCGGGAGTTTCTGTGCGAGGGT 1 chr16:30011028-30011528 ( 48) GGTGTGTGCAAGGGTGTGAGCGTGCACACGT 1 chr10:101830545-10183104 ( 13) CGCGCGCGTGTGTGTGTGTATGGGGAGGCGT 1 chr4:6640313-6640813 ( 2) CGTACCTGCGCGTGCCTGCGTGCGCGTCCGT 1 chr1:162561630-162562130 ( 20) TGTCCACGTCTGAGCGCGTGGCCGTGTGTGC 1 chr7:102363636-102364136 ( 3) TGCGTGTTCGCGCGTGCGTGCTTGCACATGC 1 chr1:234599723-234600223 ( 66) TGTGCGAGTGCGCGCGAGGGCCCGAGTGCGC 1 chr17:29390002-29390502 ( 27) TGAGGGCGCGCGCGCGCGCATGTAGTCGTGT 1 chr1:219173590-219174090 ( 12) CGTGCTCCCGCGCGTGCCTGCGTATTTGCGT 1 chr15:75202458-75202958 ( 6) TGTGGGGCTGGGTGCGCGGGCCTGCCTGCGT 1 chr1:237042479-237042979 ( 31) GGCATCACCAAGTGTGTGCAGGTGTGCGTGT 1 chr19:56567398-56567898 ( 3) GGCGGGCGTGAGCGTGCGCGTGTGGCCTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 9.29836 E= 2.2e-475 -1291 -156 -141 229 -1291 -373 149 -1291 -125 -215 -373 243 -157 -373 139 -357 -57 -65 -156 186 -98 -241 120 -125 -157 -65 -315 216 -1291 -241 133 -125 -1291 -34 -373 219 -157 -315 139 -1291 -57 -15 -315 182 -98 -1291 135 -198 -25 -93 -273 204 -1291 -1291 151 -357 -257 -93 -473 234 -257 -273 141 -1291 -198 -93 -1291 234 -1291 -315 145 -357 -125 -83 -315 219 -76 -241 129 -1291 -198 -103 -273 226 -1291 -156 133 -357 -357 -83 -473 234 -125 -1291 144 -1291 -98 -34 -241 192 -98 -193 120 -198 -357 -41 -473 221 -257 -273 137 -257 -1291 -34 -273 213 -257 -473 147 -1291 -1291 -83 -1291 238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 77 E= 2.2e-475 0.000000 0.116883 0.129870 0.753247 0.000000 0.025974 0.974026 0.000000 0.064935 0.077922 0.025974 0.831169 0.051948 0.025974 0.909091 0.012987 0.103896 0.220779 0.116883 0.558442 0.077922 0.064935 0.792208 0.064935 0.051948 0.220779 0.038961 0.688312 0.000000 0.064935 0.870130 0.064935 0.000000 0.272727 0.025974 0.701299 0.051948 0.038961 0.909091 0.000000 0.103896 0.311688 0.038961 0.545455 0.077922 0.000000 0.883117 0.038961 0.129870 0.181818 0.051948 0.636364 0.000000 0.000000 0.987013 0.012987 0.025974 0.181818 0.012987 0.779221 0.025974 0.051948 0.922078 0.000000 0.038961 0.181818 0.000000 0.779221 0.000000 0.038961 0.948052 0.012987 0.064935 0.194805 0.038961 0.701299 0.090909 0.064935 0.844156 0.000000 0.038961 0.168831 0.051948 0.740260 0.000000 0.116883 0.870130 0.012987 0.012987 0.194805 0.012987 0.779221 0.064935 0.000000 0.935065 0.000000 0.077922 0.272727 0.064935 0.584416 0.077922 0.090909 0.792208 0.038961 0.012987 0.259740 0.012987 0.714286 0.025974 0.051948 0.896104 0.025974 0.000000 0.272727 0.051948 0.675325 0.025974 0.012987 0.961039 0.000000 0.000000 0.194805 0.000000 0.805195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGYGTGTGTGTGTGTGTGTGTGT MEME-1 regular expression -------------------------------------------------------------------------------- TGTG[TC]G[TC]G[TC]G[TC]GTGTGTGTGTGTG[TC]G[TC]G[TC]GT -------------------------------------------------------------------------------- Time 357.30 secs. ******************************************************************************** ******************************************************************************** MOTIF CRCGCRCRCGCGCRCR MEME-2 width = 16 sites = 174 llr = 1614 E-value = 1.3e-101 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRCGCRCRCGCGCRCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1412:3:4:3:2:4:3 pos.-specific C 718:8:9:a:8:a2a1 probability G 151717:6:7:6:3:4 matrix T 1::1:::1::21:1:2 bits 2.7 2.4 2.2 1.9 Relative 1.6 * Entropy 1.3 * * * (13.4 bits) 1.1 * *** * * 0.8 ******** * * 0.5 ************* * 0.3 **************** 0.0 ---------------- Multilevel CGCGCGCGCGCGCACG consensus A A A A A A G A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCRCRCGCGCRCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:10793917-10794417 - 25 3.52e-09 TACAAACACG CACACACACGCGCACA CACACACGTC chr3:127822700-127823200 + 65 6.94e-09 ACCGTGcaca cacacacacgcacaca TGGGTAGCGG chr5:43192442-43192942 - 85 1.50e-08 . CACACACGCGCGCACA TAGACATGGG chr3:134795161-134795661 + 14 1.50e-08 ctctctctca cacacgcacgcacaca cccacctctc chr10:31928002-31928502 + 14 2.08e-08 tttgcagaca cacgcgcgcgcacaca cccgcctttt chr5:88674428-88674928 + 25 2.78e-08 GCCCGACCCC CGCGCACACGCACACA CTCCCCTCGC chr16:29805426-29805926 - 61 3.66e-08 GCCGTTATTT CGCGCGCACGCGCACA AGGCCGCCGT chr12:6778654-6779154 + 27 7.30e-08 cgcgcacgtg cacacacacatgcaca cacacgcgcg chr3:48087482-48087982 + 24 9.78e-08 CGCGCGCGCG cacacacacatacaca cgcacgcgca chr19:33797013-33797513 - 68 9.78e-08 CAAGCGCGCG CGCGCGCGCGCGCACA CACACACACA chr6:134052027-134052527 + 55 9.78e-08 cacacacaca cacacacacacacacG GGACTCAAGA chr6:139291841-139292341 + 12 9.78e-08 CCAATacaca cacacacacatacaca cgtgcacgca chr2:11483011-11483511 - 16 1.31e-07 CACACCCATA CACGCACACGCACGCA CACCCCACAC chr1:150235808-150236308 + 15 1.67e-07 agcgcgcgca cacacacgcacgcacg cgcgcacaca chr7:25856800-25857300 + 32 1.67e-07 cacacacaca cacacacgcacgcacg cacgcgcgcg chr6:96924553-96925053 + 29 2.00e-07 CAGGCAGTCG CGCGCACACACGCACG CAGGcacaca chr5:134845711-134846211 - 8 2.00e-07 GAGGGCCGCG CACGCACACGCTCACT CGCATCG chr8:23714502-23715002 - 85 2.99e-07 . CACACACGCGCGCGCA CACACACACA chr1:201435671-201436171 - 23 2.99e-07 CACAGGCACG CGCACACACATGCACA CACATGCACC chr2:45650825-45651325 - 19 2.99e-07 TGTGTGTGTG CACGCGCGCGCGCGCA CGGCAGTGTT chr12:133130235-13313073 - 74 2.99e-07 GCTGCGAACG CACGCACACGCACCCA CAACACACAC chr3:31980555-31981055 + 49 3.58e-07 CAATCGCGCG CGcacacacatacaca gacacacata chr7:30135738-30136238 + 67 3.58e-07 ctcaccctca cacgcgcacactcacg cgcacacgcg chr3:48240924-48241424 - 27 3.58e-07 CACATCTGCG CGCGCACGCACGCACG AAGCAAACGA chr7:128455569-128456069 - 38 6.63e-07 CCCAGGAGGG TACGCGCACGCGCACT GGAGGCCGCA chr6:36680063-36680563 - 18 7.92e-07 CCCGCGCAGA CACGCACGCGCGCGCG CGCCGGGAGC chr19:5622598-5623098 + 46 7.92e-07 TGCGGCCGCG CACGCGCACGCGCACC GCCCCCACTA chr12:64222094-64222594 - 24 7.92e-07 TGGAGGCGGT CACGCGCACGCACGCT TGTGCGCAAG chr9:137129508-137130008 + 37 7.92e-07 GTGTGAGCAG CGCGCACGCGCACGCA ATGCGCCTCA chr12:22335138-22335638 + 32 1.13e-06 cacacacaca cacacacacgttcacg ggcgcaagcg chr16:5033468-5033968 - 10 1.13e-06 CTGCCCTATC CACGCGCGCGCGCGCG CCTCCCCCG chr20:31514157-31514657 - 12 1.60e-06 TGCACGCACG CGCGCGCGCGTGCACG TCTCCCCGCC chr18:6729193-6729693 + 36 1.86e-06 cgcacacata ggcgcacacacacaca ggcgtgcaca chr17:81683700-81684200 - 60 1.86e-06 TTCCCTCCAG TGCGCGCACGCGCACG TCACCGCGCC chr1:16644490-16644990 + 33 2.21e-06 AGGGCCAAAT CACGCGCACGCTCGCG CGCTGAGCCT chr5:140564354-140564854 + 49 2.21e-06 ACATGCGCCG CGCGCACTCGCGCACG AGTGAGATCA chr5:10441631-10442131 - 10 2.57e-06 CCCCTGGAGC CGCGCACGCGCACGCG GCCCTGAGC chr1:156660165-156660665 - 66 2.57e-06 GAAGGGTGCA CACTCACACACACGCA TGCGCGTACA chr10:72215760-72216260 + 39 2.57e-06 CCCACCACGG CACGGGCGCGCGCACG CCGCCTTCGC chr10:100228776-10022927 + 2 3.02e-06 g cgcgcgcgcgcgcgcg cacacacaca chr12:122021733-12202223 - 54 3.02e-06 GCCCGCCGCT CACTCACTCGCGCACA GACACTCGCA chr3:157437777-157438277 + 45 3.02e-06 TCATGGGAAg cgcgcgcgcgcgcgcg cacacacaca chr19:39539903-39540403 - 54 3.52e-06 GCGCATAGCG CCCACGCACGCGCACT GGGGTGTCCG chr7:27662672-27663172 + 21 3.52e-06 CGGAGAAGGg cgcgcgcgcacgcgct ctcaccgctc chr4:24472641-24473141 - 54 4.09e-06 CACGCACCCC CGCGCGCACACGCCCG CCCGCTCGCG chr16:30011028-30011528 + 27 4.09e-06 CGGGCACCCC CGCGCGCACACGCCCG TGCCCACGTG chr6:87408222-87408722 + 27 4.09e-06 CCGGCAGCGG CGCGCATGCGCACACA GATCCGGAGC chr8:28401271-28401771 - 21 4.64e-06 CACACGTGCG CATACACACGTACACA CGCGTCACAC chr19:53979833-53980333 - 74 4.64e-06 GCTTTGCAGA CACACGAACGCGCACT TGCACTCACG chr1:26921499-26921999 - 16 5.29e-06 CGGAGCCGGA AACACGCACGCGCGCG GCTGCCCAGG chr13:78603443-78603943 - 73 5.29e-06 CGGCCGGACG AGCGCGCGCGCGCGCA GACGCACGGG chr5:171387366-171387866 - 74 6.80e-06 CCACCGAGCA CGCGCACTCGTACACT GGCCCCACCC chr21:46323766-46324266 - 70 6.80e-06 TTTCCGGTCT CGCGCACGCGCGCTCT GGGCGGTGCA chr19:46860358-46860858 + 8 6.80e-06 AGCCCCC CGCGCACGCGCGCTCG CCCATCCCGC chr1:181022522-181023022 + 75 6.80e-06 GAAGCCGAGC AGCGGGCACGCGCACA GGCCAGGTGC chr10:88880377-88880877 - 73 7.67e-06 TGCGCGCTCT CACTCACGCGCGCGCG CCGCTACTCA chr19:46600818-46601318 - 85 7.67e-06 . CGCGCGCGCGCTCGCT CCCGTCGCCG chr22:38202447-38202947 - 34 7.67e-06 ACAAGCACAA CACACGCACACACGCC CCCGAGGTAC chr5:132369672-132370172 + 30 7.67e-06 CGGCGGGTGC CCCGCGCGCACGCGCA AAGCCCGCCG chr12:133037200-13303770 - 56 7.67e-06 TCCCCCGTGT CCCGCGCACGCGCCCA AACCGTCGGC chr2:96321583-96322083 + 17 7.67e-06 GTGGCCCCTC CGCAGGCGCGTGCACA GGCTCGCATT chr19:38618625-38619125 + 75 8.63e-06 GGTGAGTTCG CGCGCGCACGCTCCCG CGCTACCGGC chr22:29603373-29603873 + 25 8.63e-06 GTGACAGCCA CGCGCGCGCGTACGCG CCCGATGCAG chr1:162561630-162562130 + 56 9.71e-06 GGACACGCGT CGCACGAACGTGCACA GCGCGGGCAG chr1:154558718-154559218 - 24 9.71e-06 AGGGGCGTCG CGCGCAAGCACGCACG ACATACGCAA chr3:136752281-136752781 + 51 9.71e-06 CAGTGGGGAT TGCGCGCACGCGCACC AGCGGGGCGG chr12:56448945-56449445 - 17 9.71e-06 GCTCGTGCTG CAGGCGCGCACGCGCA ATTCTGTACT chr2:189784219-189784719 - 59 1.09e-05 ACCCGCACCC AGCACGCACGCGCGCG GCAGAGCGGG chr7:139340196-139340696 - 75 1.09e-05 CCGGACGTTG AACGGGCGCGCGCACG CTTCTGCGTA chr10:86399999-86400499 + 52 1.09e-05 CGAGTCGGCT GACACGCGCGCTCACG GCGAGTGGAG chr1:237042479-237042979 - 79 1.23e-05 CGCGCG CACAGACACGCGCCCT TGCCTTCCCT chr12:64824376-64824876 + 13 1.39e-05 CTCCGTCTCC CACGcgctcgctcgct cgctcgctcc chr17:4710348-4710848 - 71 1.56e-05 CCCGCGCCAA TGCGCACGCGCGCCCT CCGCGCTCTC chr1:29237128-29237628 - 57 1.56e-05 GACTCGCTCC CACACACGCATTCCCG GCACACTTGG chr6:136289153-136289653 + 72 1.56e-05 AAGAGGAAGA TATGCGCACGCGCACG GGAGGCCGCG chr6:31739748-31740248 - 15 1.56e-05 GAGCGAGGTG CGCGCGCACGCGCCCC GCCCTCCTAA chr16:30698487-30698987 - 17 1.56e-05 CTCGCTCGCT CAGGCACGCGTGCGCA GAAGGGCGGG chr19:37906428-37906928 + 76 1.56e-05 ccggcgcgag aacgcgcgcgcgcTCT CGAAAGAAA chr10:102399379-10239987 + 71 1.75e-05 ACGGCGTCAC CGCGGACGCGCGCGCG CTGCTGGCGG chr10:73772465-73772965 + 12 1.75e-05 CTGAGGGACT CGCGGACGCGCGCGCT GCTCTTCTAC chr19:36605379-36605879 - 83 1.75e-05 CG CGCGCGCGAACACACA GCGCCCGCTC chr2:135741497-135741997 - 84 1.75e-05 A CAAGCGCGCACGCCCG TCAGCGGCAC chr5:154858208-154858708 + 79 1.95e-05 CGGGCGTGAC CAGGCGCGCGCGCGCG TCTGGA chr12:123232865-12323336 + 77 1.95e-05 TACCCGAGGG AGCGCGCGCGCGCCCG GCGTCTCT chr19:38647225-38647725 + 13 1.95e-05 ATACGCGAAC GACGCGCGCGTTCACG CCGGAGAGGG chr19:12945552-12946052 + 3 2.17e-05 AG AACGCGCTCGTGCGCA TGCCCACAAA chr7:114086013-114086513 + 14 2.17e-05 CGCCTGCCAG CGCACATTcacacaca cagacacaca chr19:18388383-18388883 - 5 2.17e-05 TGGTCCCCGT TGCGCGCACGCGCTCT GCGG chr19:31348817-31349317 + 11 2.17e-05 GTACCCGAGG CGGGCGCACGCACCCA AACAGGAGAG chr15:70097512-70098012 + 52 2.17e-05 GCAAACCCCC AAAacacacacaccca acacacacac chr12:68807904-68808404 - 8 2.17e-05 TCCGGGCATT TGTGCGCGCGCACACA ACCGGCC chr4:6640313-6640813 - 71 2.17e-05 GGGGGCGAGC TGCGGGCGCGCGCACG TCTAGAAAGA chr8:38996732-38997232 - 2 2.41e-05 GCGCGCCCGA CGAGCACGCGCGCCCG A chr17:42567078-42567578 - 69 2.41e-05 CCGTTCCCCC GACTCGCGCGCACACG CCTCGTTTGT chr13:51221866-51222366 + 11 2.41e-05 GCACCACAGA CGGGCACACGCGCTCA GCACAGCCAC chr19:10194472-10194972 + 33 2.41e-05 CGCACCACCC CACGCATGCGCGCCCG TCTGTCAGCA chr19:43754804-43755304 - 59 2.66e-05 CAACCCCCCA ACCGCGCGCACGCGCA TTGAGTCAGA chr17:3892033-3892533 + 82 2.66e-05 gcgtccacgt gacacacgcacacccg cct chr9:124940897-124941397 - 46 2.66e-05 CAAGGCCGCG CACGGGCGCATGCGCG CGTCGGACCA chr5:138575631-138576131 + 54 2.66e-05 CTGGGGCGAG CCCGGGCGCGTGCACA CCCCCCGGGC chr14:31207807-31208307 + 2 2.94e-05 G AGCGCGCTCATGCACG CACGTCCAGC chr21:38660695-38661195 - 1 3.24e-05 CTCTTGGCCC CGAGGGCGCGCGCACG chr12:6689001-6689501 + 33 3.24e-05 CAAGGCGCAG CGCGCGGGCACGCACT TCTGGAGCGA chr1:154220567-154221067 - 24 3.24e-05 AAGGGGCGCG CACGCAAGCGTGCGCG TGCCGCCTCG chr7:44796254-44796754 + 52 3.24e-05 TCCGCGCGTT AGCGCGCACGCGCGCC TCATGTGTCG chr13:113584178-11358467 + 82 3.24e-05 ccgagcgcac gccgcgcgcgcgcact gcc chr7:158704795-158705295 - 63 3.57e-05 GGCCCCAGGA CGCGCACGAGCGCGCA GTGGACGTCG chr10:102055888-10205638 + 83 3.57e-05 GCTCCGGGCT CACGGGCGCGCTCCCG AC chr6:16759815-16760315 + 2 3.57e-05 a cactcactcacactca cGCCGCGCTC chr19:16542393-16542893 + 3 3.57e-05 GC GACGCGCACGCGCAGA AGTTTCCTGA chr11:116835826-11683632 - 50 3.57e-05 GAGATGCGCG ACCGCGCGCGCGCCCA TGTGGACGCG chr1:70205384-70205884 - 36 3.92e-05 CCCAGCGCCC AGAGCGCGCGCTCACG AAAGGAGCGG chr16:67183738-67184238 + 31 3.92e-05 CGTACGTCCT CGGGCGCGCGCACGCT CTTACGAAAG chr15:65422334-65422834 + 43 4.31e-05 CTCTGCGAAC CAAAGGCACACACCCA CTGCGGACAA chr16:31180363-31180863 + 42 4.31e-05 GGGCACTCGC GGCGCGCACGCGCTCT GCGGGCCCCT chr8:37899002-37899502 + 43 4.31e-05 CTCCTCGCGC CACACGGGCGCGCCCA GGCTGCGCTC chr5:98928799-98929299 + 10 4.31e-05 CGCGAGGCG GGCGGGCGCGCGCACG CCGAAGCCTT chr2:96208557-96209057 + 77 4.31e-05 CCACACGCGC GGCGCGCGCGCACCCT ACTTTTTC chr16:30417789-30418289 + 3 4.31e-05 CA CCGACGCACGCACACG GGCGAGCGGC chr4:15001968-15002468 - 9 4.31e-05 GGGAGCATTG GGCGGGCGCGCGCACG AGGGCAAG chr1:244918690-244919190 + 15 4.31e-05 GCAGCTCGGG GGCGCGCACACCCACA CCGCGCCACG chr21:28885049-28885549 + 19 4.71e-05 ACGTGTCCTC CGCGGGCTCGTACACG TCGCTGAAGG chr10:99732013-99732513 + 23 4.71e-05 GCGTAGGTGT CGGGGACGCGCGCACG GGCGCGCGCA chr19:39320205-39320705 + 18 4.71e-05 CCAGAGCAGC TAGTCGCGCACGCACA TGGGCTTGGG chr17:47492377-47492877 + 20 4.71e-05 GAGCCGCGAG GACGCGCACGTGCTCG CGGGAGTGGG chr2:26033780-26034280 - 34 5.15e-05 GCGGTCCGCC TCTGCGCACGCGCACA AGAGGGCATG chr15:51622685-51623185 + 9 5.15e-05 ggagcggg ccagcgcgcgcgccca ccgcggggga chr1:111989984-111990484 - 54 5.15e-05 CCCCACCCCC CGCTCACGCGCGCGCC CCTCTCCACA chr5:179858596-179859096 + 69 5.62e-05 GGCCCCGCCC CACGCACGCGCTCCGA ACCCTCTAGT chr12:84912556-84913056 - 19 5.62e-05 CATACGCATG TACACGCGCACCCGCA CCCGCGCGCC chr20:36092999-36093499 - 73 6.13e-05 CAAGCGAAGC CACTGGCACACGCCCT CACCCAGAGG chr11:125625635-12562613 + 51 6.68e-05 AGGGGCAGGA CACGGGAACGCGCGCT GTCTTGCTTT chr6:53359332-53359832 + 9 6.68e-05 TCGCGAGG AGCACGCTCGCGCCCT CCCCGCCTTG chr8:33484756-33485256 - 84 7.27e-05 C CGCGCGCGCGCCCCCG CGTCTTCACC chr19:38849260-38849760 + 47 7.27e-05 CGCTCCGGAC CCCGCGCACGCGCAGG CGCCTGTCCT chr16:28823904-28824404 - 42 7.27e-05 ACCGAGCATC CACGCGCACGTACGGG AAGGGGGCGC chr10:931542-932042 + 22 7.27e-05 TCGCGCCCTG AACTCGCGCACTCACC CGCCGGTCCC chr21:42893073-42893573 + 6 7.90e-05 TCAGG CGCGGGTGCGCGCGCA GCTGCTGTGG chr15:58770970-58771470 - 65 7.90e-05 ACTAAGAACG CGCGCGGGCGCGCGCT ACCGCTCTGT chr12:55830579-55831079 + 81 7.90e-05 aacacacacc ccaacacacacGCCCT GTCC chr1:155688305-155688805 + 63 8.58e-05 AGCCATCCCG TACGCGCTCACCCACG GGAACCTCCT chr5:134738224-134738724 - 36 8.58e-05 GCCTGTGAGC TAAGCACTCACGCACC GCCCCACGCG chr19:5903605-5904105 + 71 8.58e-05 GGACATGGAT CGCGCGCACGCGCCGG GGACCGGCCT chr1:29181750-29182250 - 9 9.32e-05 GAGCGGGAAG CGAACGCGCGCTCTCT CCGGTTAC chr16:1827134-1827634 + 79 9.32e-05 CATCCTCATG CCCGCGTACACTCGCA ACCTGC chr15:68820219-68820719 + 43 9.32e-05 CACTCGCACA CGCGGGAGCACACGCA CAGGTAGTCA chr19:56567398-56567898 - 83 9.32e-05 TC CCCGCGCGCGCTCGCC CCTCCTCAGC chr1:63523058-63523558 - 41 9.32e-05 CTCGCTCCTT TGCTCGCGCACACCCG GATCCTTCGT chr5:132556726-132557226 - 24 9.32e-05 GGCCTCTAGG CCCGCACGCGTCCACG CCGCTCTCCT chr19:10565633-10566133 + 47 1.01e-04 CGCGCAGGCT CCCGCGCGCATGCGCC CCGCACTCAC chr5:16935702-16936202 + 7 1.01e-04 CACTCC CGAGGACGCGCGCCCG CGGGGCTCCC chr12:49130654-49131154 + 74 1.01e-04 TGGAAGAGTC CGCGCGCGCGTCCACC CAAGGCGGAG chr17:58007051-58007551 + 72 1.09e-04 ATTCGATCCC AACACGCACGCGCGGG AGCGCAACGG chr19:55407852-55408352 + 64 1.09e-04 GCCCGGCATA CGCGCGGGCGCGCCCT GACGCTGAGG chr18:49486976-49487476 + 16 1.18e-04 AGGCCGCTAG CCCGGGCACACTCACC CGCGACCGCG chr14:73569361-73569861 - 51 1.27e-04 TGCCGCCCAG CGCGGGCGCGCGCTCC AGGTCCAGCT chr5:72308233-72308733 + 70 1.27e-04 TGGGCGCGGC CCTGCGCGCGCACGCT ACCCGACAGC chr7:139359606-139360106 - 81 1.47e-04 CCAC GACGGGAGCGCGCACG CTCCTCGCGC chr19:36687348-36687848 - 47 1.57e-04 CGGGCGTCTG CGCATGCGCACTCCCA CGCGGACGAT chr5:177006485-177006985 - 51 1.57e-04 TCTCTGGCAT CGGACGCGCGCGCCCC TCCCCCTCCC chr12:93441992-93442492 - 39 1.57e-04 GAGAGACGCG CGCGCAGTCGCGCGCG GGTCGTGCCG chr11:76380961-76381461 + 42 1.57e-04 GCCTTCTCAG CAGGCGGGCACGCGCA AGGAAGCGCG chr19:39402428-39402928 + 22 1.69e-04 AGGCAATCGC GCCAGGCGCACACACG GCGCGAGCAC chr7:25125135-25125635 - 82 1.69e-04 TCG CCAGCATGCGCGCGCA GGTCCTTGGC chr1:220046262-220046762 - 11 1.81e-04 GCGGCGGCGT CGGGTACGCGCACACG TTGCATCTTC chr5:55534315-55534815 + 44 1.81e-04 CGGACCCGGC GGCGCGTACGTACCCA GCAACACGCA chr1:28736644-28737144 - 47 1.94e-04 TCTATGCTTT TACGCGCGCGCCCGCC CCCCACCGCC chr12:120446200-12044670 + 43 1.94e-04 CGCTCGGCGT TACGCGCGGGCGCACT GCGGGGGCCA chr1:99849895-99850395 - 28 1.94e-04 CCAACCTGGC CGTGCGCGCACTCGCC CCAGGTGGGA chr21:44801607-44802107 - 58 2.07e-04 CGCGCCTCGG CGATCGCGCACGCGCC ACGCCCCGGA chr1:155562388-155562888 - 19 2.36e-04 GACGAGCCCG TAGACACTCGTACGCG TGCGGGCGGG chr1:54886755-54887255 + 56 2.68e-04 AGGAGGAAGA GGCACACGAACACCCA GCGCTGGTGG chrX:41334352-41334852 + 32 3.04e-04 CGCTCTCGCG GGGACGCGCATGCGCG AATCCCGACT chr12:122225782-12222628 + 51 3.04e-04 GCGCGGACGC CAGACGCACACGCCGG AAGTGACGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCRCRCGCGCRCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:10793917-10794417 3.5e-09 24_[-2]_60 chr3:127822700-127823200 6.9e-09 64_[+2]_20 chr5:43192442-43192942 1.5e-08 84_[-2] chr3:134795161-134795661 1.5e-08 13_[+2]_71 chr10:31928002-31928502 2.1e-08 13_[+2]_71 chr5:88674428-88674928 2.8e-08 24_[+2]_60 chr16:29805426-29805926 3.7e-08 60_[-2]_24 chr12:6778654-6779154 7.3e-08 26_[+2]_58 chr3:48087482-48087982 9.8e-08 23_[+2]_61 chr19:33797013-33797513 9.8e-08 67_[-2]_17 chr6:134052027-134052527 9.8e-08 54_[+2]_30 chr6:139291841-139292341 9.8e-08 11_[+2]_73 chr2:11483011-11483511 1.3e-07 15_[-2]_69 chr1:150235808-150236308 1.7e-07 14_[+2]_70 chr7:25856800-25857300 1.7e-07 31_[+2]_53 chr6:96924553-96925053 2e-07 28_[+2]_56 chr5:134845711-134846211 2e-07 7_[-2]_77 chr8:23714502-23715002 3e-07 84_[-2] chr1:201435671-201436171 3e-07 22_[-2]_62 chr2:45650825-45651325 3e-07 18_[-2]_66 chr12:133130235-13313073 3e-07 73_[-2]_11 chr3:31980555-31981055 3.6e-07 48_[+2]_36 chr7:30135738-30136238 3.6e-07 66_[+2]_18 chr3:48240924-48241424 3.6e-07 26_[-2]_58 chr7:128455569-128456069 6.6e-07 37_[-2]_47 chr6:36680063-36680563 7.9e-07 17_[-2]_67 chr19:5622598-5623098 7.9e-07 45_[+2]_39 chr12:64222094-64222594 7.9e-07 23_[-2]_61 chr9:137129508-137130008 7.9e-07 36_[+2]_48 chr12:22335138-22335638 1.1e-06 31_[+2]_53 chr16:5033468-5033968 1.1e-06 9_[-2]_75 chr20:31514157-31514657 1.6e-06 11_[-2]_73 chr18:6729193-6729693 1.9e-06 35_[+2]_49 chr17:81683700-81684200 1.9e-06 59_[-2]_25 chr1:16644490-16644990 2.2e-06 32_[+2]_52 chr5:140564354-140564854 2.2e-06 48_[+2]_36 chr5:10441631-10442131 2.6e-06 9_[-2]_75 chr1:156660165-156660665 2.6e-06 65_[-2]_19 chr10:72215760-72216260 2.6e-06 38_[+2]_46 chr10:100228776-10022927 3e-06 1_[+2]_83 chr12:122021733-12202223 3e-06 53_[-2]_31 chr3:157437777-157438277 3e-06 44_[+2]_40 chr19:39539903-39540403 3.5e-06 53_[-2]_31 chr7:27662672-27663172 3.5e-06 20_[+2]_64 chr4:24472641-24473141 4.1e-06 53_[-2]_31 chr16:30011028-30011528 4.1e-06 26_[+2]_58 chr6:87408222-87408722 4.1e-06 26_[+2]_58 chr8:28401271-28401771 4.6e-06 20_[-2]_64 chr19:53979833-53980333 4.6e-06 73_[-2]_11 chr1:26921499-26921999 5.3e-06 15_[-2]_69 chr13:78603443-78603943 5.3e-06 72_[-2]_12 chr5:171387366-171387866 6.8e-06 73_[-2]_11 chr21:46323766-46324266 6.8e-06 69_[-2]_15 chr19:46860358-46860858 6.8e-06 7_[+2]_77 chr1:181022522-181023022 6.8e-06 74_[+2]_10 chr10:88880377-88880877 7.7e-06 72_[-2]_12 chr19:46600818-46601318 7.7e-06 84_[-2] chr22:38202447-38202947 7.7e-06 33_[-2]_51 chr5:132369672-132370172 7.7e-06 29_[+2]_55 chr12:133037200-13303770 7.7e-06 55_[-2]_29 chr2:96321583-96322083 7.7e-06 16_[+2]_68 chr19:38618625-38619125 8.6e-06 74_[+2]_10 chr22:29603373-29603873 8.6e-06 24_[+2]_60 chr1:162561630-162562130 9.7e-06 55_[+2]_29 chr1:154558718-154559218 9.7e-06 23_[-2]_61 chr3:136752281-136752781 9.7e-06 50_[+2]_34 chr12:56448945-56449445 9.7e-06 16_[-2]_68 chr2:189784219-189784719 1.1e-05 58_[-2]_26 chr7:139340196-139340696 1.1e-05 74_[-2]_10 chr10:86399999-86400499 1.1e-05 51_[+2]_33 chr1:237042479-237042979 1.2e-05 78_[-2]_6 chr12:64824376-64824876 1.4e-05 12_[+2]_72 chr17:4710348-4710848 1.6e-05 70_[-2]_14 chr1:29237128-29237628 1.6e-05 56_[-2]_28 chr6:136289153-136289653 1.6e-05 71_[+2]_13 chr6:31739748-31740248 1.6e-05 14_[-2]_70 chr16:30698487-30698987 1.6e-05 16_[-2]_68 chr19:37906428-37906928 1.6e-05 75_[+2]_9 chr10:102399379-10239987 1.7e-05 70_[+2]_14 chr10:73772465-73772965 1.7e-05 11_[+2]_73 chr19:36605379-36605879 1.7e-05 82_[-2]_2 chr2:135741497-135741997 1.7e-05 83_[-2]_1 chr5:154858208-154858708 1.9e-05 78_[+2]_6 chr12:123232865-12323336 1.9e-05 76_[+2]_8 chr19:38647225-38647725 1.9e-05 12_[+2]_72 chr19:12945552-12946052 2.2e-05 2_[+2]_82 chr7:114086013-114086513 2.2e-05 13_[+2]_71 chr19:18388383-18388883 2.2e-05 4_[-2]_80 chr19:31348817-31349317 2.2e-05 10_[+2]_74 chr15:70097512-70098012 2.2e-05 51_[+2]_33 chr12:68807904-68808404 2.2e-05 7_[-2]_77 chr4:6640313-6640813 2.2e-05 70_[-2]_14 chr8:38996732-38997232 2.4e-05 1_[-2]_83 chr17:42567078-42567578 2.4e-05 68_[-2]_16 chr13:51221866-51222366 2.4e-05 10_[+2]_74 chr19:10194472-10194972 2.4e-05 32_[+2]_52 chr19:43754804-43755304 2.7e-05 58_[-2]_26 chr17:3892033-3892533 2.7e-05 81_[+2]_3 chr9:124940897-124941397 2.7e-05 45_[-2]_39 chr5:138575631-138576131 2.7e-05 53_[+2]_31 chr14:31207807-31208307 2.9e-05 1_[+2]_83 chr21:38660695-38661195 3.2e-05 [-2]_84 chr12:6689001-6689501 3.2e-05 32_[+2]_52 chr1:154220567-154221067 3.2e-05 23_[-2]_61 chr7:44796254-44796754 3.2e-05 51_[+2]_33 chr13:113584178-11358467 3.2e-05 81_[+2]_3 chr7:158704795-158705295 3.6e-05 62_[-2]_22 chr10:102055888-10205638 3.6e-05 82_[+2]_2 chr6:16759815-16760315 3.6e-05 1_[+2]_83 chr19:16542393-16542893 3.6e-05 2_[+2]_82 chr11:116835826-11683632 3.6e-05 49_[-2]_35 chr1:70205384-70205884 3.9e-05 35_[-2]_49 chr16:67183738-67184238 3.9e-05 30_[+2]_54 chr15:65422334-65422834 4.3e-05 42_[+2]_42 chr16:31180363-31180863 4.3e-05 41_[+2]_43 chr8:37899002-37899502 4.3e-05 42_[+2]_42 chr5:98928799-98929299 4.3e-05 9_[+2]_75 chr2:96208557-96209057 4.3e-05 76_[+2]_8 chr16:30417789-30418289 4.3e-05 2_[+2]_82 chr4:15001968-15002468 4.3e-05 8_[-2]_76 chr1:244918690-244919190 4.3e-05 14_[+2]_70 chr21:28885049-28885549 4.7e-05 18_[+2]_66 chr10:99732013-99732513 4.7e-05 22_[+2]_62 chr19:39320205-39320705 4.7e-05 17_[+2]_67 chr17:47492377-47492877 4.7e-05 19_[+2]_65 chr2:26033780-26034280 5.2e-05 33_[-2]_51 chr15:51622685-51623185 5.2e-05 8_[+2]_76 chr1:111989984-111990484 5.2e-05 53_[-2]_31 chr5:179858596-179859096 5.6e-05 68_[+2]_16 chr12:84912556-84913056 5.6e-05 18_[-2]_66 chr20:36092999-36093499 6.1e-05 72_[-2]_12 chr11:125625635-12562613 6.7e-05 50_[+2]_34 chr6:53359332-53359832 6.7e-05 8_[+2]_76 chr8:33484756-33485256 7.3e-05 83_[-2]_1 chr19:38849260-38849760 7.3e-05 46_[+2]_38 chr16:28823904-28824404 7.3e-05 41_[-2]_43 chr10:931542-932042 7.3e-05 21_[+2]_63 chr21:42893073-42893573 7.9e-05 5_[+2]_79 chr15:58770970-58771470 7.9e-05 64_[-2]_20 chr12:55830579-55831079 7.9e-05 80_[+2]_4 chr1:155688305-155688805 8.6e-05 62_[+2]_22 chr5:134738224-134738724 8.6e-05 35_[-2]_49 chr19:5903605-5904105 8.6e-05 70_[+2]_14 chr1:29181750-29182250 9.3e-05 8_[-2]_76 chr16:1827134-1827634 9.3e-05 78_[+2]_6 chr15:68820219-68820719 9.3e-05 42_[+2]_42 chr19:56567398-56567898 9.3e-05 82_[-2]_2 chr1:63523058-63523558 9.3e-05 40_[-2]_44 chr5:132556726-132557226 9.3e-05 23_[-2]_61 chr19:10565633-10566133 0.0001 46_[+2]_38 chr5:16935702-16936202 0.0001 6_[+2]_78 chr12:49130654-49131154 0.0001 73_[+2]_11 chr17:58007051-58007551 0.00011 71_[+2]_13 chr19:55407852-55408352 0.00011 63_[+2]_21 chr18:49486976-49487476 0.00012 15_[+2]_69 chr14:73569361-73569861 0.00013 50_[-2]_34 chr5:72308233-72308733 0.00013 69_[+2]_15 chr7:139359606-139360106 0.00015 80_[-2]_4 chr19:36687348-36687848 0.00016 46_[-2]_38 chr5:177006485-177006985 0.00016 50_[-2]_34 chr12:93441992-93442492 0.00016 38_[-2]_46 chr11:76380961-76381461 0.00016 41_[+2]_43 chr19:39402428-39402928 0.00017 21_[+2]_63 chr7:25125135-25125635 0.00017 81_[-2]_3 chr1:220046262-220046762 0.00018 10_[-2]_74 chr5:55534315-55534815 0.00018 43_[+2]_41 chr1:28736644-28737144 0.00019 46_[-2]_38 chr12:120446200-12044670 0.00019 42_[+2]_42 chr1:99849895-99850395 0.00019 27_[-2]_57 chr21:44801607-44802107 0.00021 57_[-2]_27 chr1:155562388-155562888 0.00024 18_[-2]_66 chr1:54886755-54887255 0.00027 55_[+2]_29 chrX:41334352-41334852 0.0003 31_[+2]_53 chr12:122225782-12222628 0.0003 50_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCRCRCGCGCRCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRCGCRCRCGCGCRCR width=16 seqs=174 chr1:10793917-10794417 ( 25) CACACACACGCGCACA 1 chr3:127822700-127823200 ( 65) CACACACACGCACACA 1 chr5:43192442-43192942 ( 85) CACACACGCGCGCACA 1 chr3:134795161-134795661 ( 14) CACACGCACGCACACA 1 chr10:31928002-31928502 ( 14) CACGCGCGCGCACACA 1 chr5:88674428-88674928 ( 25) CGCGCACACGCACACA 1 chr16:29805426-29805926 ( 61) CGCGCGCACGCGCACA 1 chr12:6778654-6779154 ( 27) CACACACACATGCACA 1 chr3:48087482-48087982 ( 24) CACACACACATACACA 1 chr19:33797013-33797513 ( 68) CGCGCGCGCGCGCACA 1 chr6:134052027-134052527 ( 55) CACACACACACACACG 1 chr6:139291841-139292341 ( 12) CACACACACATACACA 1 chr2:11483011-11483511 ( 16) CACGCACACGCACGCA 1 chr1:150235808-150236308 ( 15) CACACACGCACGCACG 1 chr7:25856800-25857300 ( 32) CACACACGCACGCACG 1 chr6:96924553-96925053 ( 29) CGCGCACACACGCACG 1 chr5:134845711-134846211 ( 8) CACGCACACGCTCACT 1 chr8:23714502-23715002 ( 85) CACACACGCGCGCGCA 1 chr1:201435671-201436171 ( 23) CGCACACACATGCACA 1 chr2:45650825-45651325 ( 19) CACGCGCGCGCGCGCA 1 chr12:133130235-13313073 ( 74) CACGCACACGCACCCA 1 chr3:31980555-31981055 ( 49) CGCACACACATACACA 1 chr7:30135738-30136238 ( 67) CACGCGCACACTCACG 1 chr3:48240924-48241424 ( 27) CGCGCACGCACGCACG 1 chr7:128455569-128456069 ( 38) TACGCGCACGCGCACT 1 chr6:36680063-36680563 ( 18) CACGCACGCGCGCGCG 1 chr19:5622598-5623098 ( 46) CACGCGCACGCGCACC 1 chr12:64222094-64222594 ( 24) CACGCGCACGCACGCT 1 chr9:137129508-137130008 ( 37) CGCGCACGCGCACGCA 1 chr12:22335138-22335638 ( 32) CACACACACGTTCACG 1 chr16:5033468-5033968 ( 10) CACGCGCGCGCGCGCG 1 chr20:31514157-31514657 ( 12) CGCGCGCGCGTGCACG 1 chr18:6729193-6729693 ( 36) GGCGCACACACACACA 1 chr17:81683700-81684200 ( 60) TGCGCGCACGCGCACG 1 chr1:16644490-16644990 ( 33) CACGCGCACGCTCGCG 1 chr5:140564354-140564854 ( 49) CGCGCACTCGCGCACG 1 chr5:10441631-10442131 ( 10) CGCGCACGCGCACGCG 1 chr1:156660165-156660665 ( 66) CACTCACACACACGCA 1 chr10:72215760-72216260 ( 39) CACGGGCGCGCGCACG 1 chr10:100228776-10022927 ( 2) CGCGCGCGCGCGCGCG 1 chr12:122021733-12202223 ( 54) CACTCACTCGCGCACA 1 chr3:157437777-157438277 ( 45) CGCGCGCGCGCGCGCG 1 chr19:39539903-39540403 ( 54) CCCACGCACGCGCACT 1 chr7:27662672-27663172 ( 21) CGCGCGCGCACGCGCT 1 chr4:24472641-24473141 ( 54) CGCGCGCACACGCCCG 1 chr16:30011028-30011528 ( 27) CGCGCGCACACGCCCG 1 chr6:87408222-87408722 ( 27) CGCGCATGCGCACACA 1 chr8:28401271-28401771 ( 21) CATACACACGTACACA 1 chr19:53979833-53980333 ( 74) CACACGAACGCGCACT 1 chr1:26921499-26921999 ( 16) AACACGCACGCGCGCG 1 chr13:78603443-78603943 ( 73) AGCGCGCGCGCGCGCA 1 chr5:171387366-171387866 ( 74) CGCGCACTCGTACACT 1 chr21:46323766-46324266 ( 70) CGCGCACGCGCGCTCT 1 chr19:46860358-46860858 ( 8) CGCGCACGCGCGCTCG 1 chr1:181022522-181023022 ( 75) AGCGGGCACGCGCACA 1 chr10:88880377-88880877 ( 73) CACTCACGCGCGCGCG 1 chr19:46600818-46601318 ( 85) CGCGCGCGCGCTCGCT 1 chr22:38202447-38202947 ( 34) CACACGCACACACGCC 1 chr5:132369672-132370172 ( 30) CCCGCGCGCACGCGCA 1 chr12:133037200-13303770 ( 56) CCCGCGCACGCGCCCA 1 chr2:96321583-96322083 ( 17) CGCAGGCGCGTGCACA 1 chr19:38618625-38619125 ( 75) CGCGCGCACGCTCCCG 1 chr22:29603373-29603873 ( 25) CGCGCGCGCGTACGCG 1 chr1:162561630-162562130 ( 56) CGCACGAACGTGCACA 1 chr1:154558718-154559218 ( 24) CGCGCAAGCACGCACG 1 chr3:136752281-136752781 ( 51) TGCGCGCACGCGCACC 1 chr12:56448945-56449445 ( 17) CAGGCGCGCACGCGCA 1 chr2:189784219-189784719 ( 59) AGCACGCACGCGCGCG 1 chr7:139340196-139340696 ( 75) AACGGGCGCGCGCACG 1 chr10:86399999-86400499 ( 52) GACACGCGCGCTCACG 1 chr1:237042479-237042979 ( 79) CACAGACACGCGCCCT 1 chr12:64824376-64824876 ( 13) CACGCGCTCGCTCGCT 1 chr17:4710348-4710848 ( 71) TGCGCACGCGCGCCCT 1 chr1:29237128-29237628 ( 57) CACACACGCATTCCCG 1 chr6:136289153-136289653 ( 72) TATGCGCACGCGCACG 1 chr6:31739748-31740248 ( 15) CGCGCGCACGCGCCCC 1 chr16:30698487-30698987 ( 17) CAGGCACGCGTGCGCA 1 chr19:37906428-37906928 ( 76) AACGCGCGCGCGCTCT 1 chr10:102399379-10239987 ( 71) CGCGGACGCGCGCGCG 1 chr10:73772465-73772965 ( 12) CGCGGACGCGCGCGCT 1 chr19:36605379-36605879 ( 83) CGCGCGCGAACACACA 1 chr2:135741497-135741997 ( 84) CAAGCGCGCACGCCCG 1 chr5:154858208-154858708 ( 79) CAGGCGCGCGCGCGCG 1 chr12:123232865-12323336 ( 77) AGCGCGCGCGCGCCCG 1 chr19:38647225-38647725 ( 13) GACGCGCGCGTTCACG 1 chr19:12945552-12946052 ( 3) AACGCGCTCGTGCGCA 1 chr7:114086013-114086513 ( 14) CGCACATTCACACACA 1 chr19:18388383-18388883 ( 5) TGCGCGCACGCGCTCT 1 chr19:31348817-31349317 ( 11) CGGGCGCACGCACCCA 1 chr15:70097512-70098012 ( 52) AAAACACACACACCCA 1 chr12:68807904-68808404 ( 8) TGTGCGCGCGCACACA 1 chr4:6640313-6640813 ( 71) TGCGGGCGCGCGCACG 1 chr8:38996732-38997232 ( 2) CGAGCACGCGCGCCCG 1 chr17:42567078-42567578 ( 69) GACTCGCGCGCACACG 1 chr13:51221866-51222366 ( 11) CGGGCACACGCGCTCA 1 chr19:10194472-10194972 ( 33) CACGCATGCGCGCCCG 1 chr19:43754804-43755304 ( 59) ACCGCGCGCACGCGCA 1 chr17:3892033-3892533 ( 82) GACACACGCACACCCG 1 chr9:124940897-124941397 ( 46) CACGGGCGCATGCGCG 1 chr5:138575631-138576131 ( 54) CCCGGGCGCGTGCACA 1 chr14:31207807-31208307 ( 2) AGCGCGCTCATGCACG 1 chr21:38660695-38661195 ( 1) CGAGGGCGCGCGCACG 1 chr12:6689001-6689501 ( 33) CGCGCGGGCACGCACT 1 chr1:154220567-154221067 ( 24) CACGCAAGCGTGCGCG 1 chr7:44796254-44796754 ( 52) AGCGCGCACGCGCGCC 1 chr13:113584178-11358467 ( 82) GCCGCGCGCGCGCACT 1 chr7:158704795-158705295 ( 63) CGCGCACGAGCGCGCA 1 chr10:102055888-10205638 ( 83) CACGGGCGCGCTCCCG 1 chr6:16759815-16760315 ( 2) CACTCACTCACACTCA 1 chr19:16542393-16542893 ( 3) GACGCGCACGCGCAGA 1 chr11:116835826-11683632 ( 50) ACCGCGCGCGCGCCCA 1 chr1:70205384-70205884 ( 36) AGAGCGCGCGCTCACG 1 chr16:67183738-67184238 ( 31) CGGGCGCGCGCACGCT 1 chr15:65422334-65422834 ( 43) CAAAGGCACACACCCA 1 chr16:31180363-31180863 ( 42) GGCGCGCACGCGCTCT 1 chr8:37899002-37899502 ( 43) CACACGGGCGCGCCCA 1 chr5:98928799-98929299 ( 10) GGCGGGCGCGCGCACG 1 chr2:96208557-96209057 ( 77) GGCGCGCGCGCACCCT 1 chr16:30417789-30418289 ( 3) CCGACGCACGCACACG 1 chr4:15001968-15002468 ( 9) GGCGGGCGCGCGCACG 1 chr1:244918690-244919190 ( 15) GGCGCGCACACCCACA 1 chr21:28885049-28885549 ( 19) CGCGGGCTCGTACACG 1 chr10:99732013-99732513 ( 23) CGGGGACGCGCGCACG 1 chr19:39320205-39320705 ( 18) TAGTCGCGCACGCACA 1 chr17:47492377-47492877 ( 20) GACGCGCACGTGCTCG 1 chr2:26033780-26034280 ( 34) TCTGCGCACGCGCACA 1 chr15:51622685-51623185 ( 9) CCAGCGCGCGCGCCCA 1 chr1:111989984-111990484 ( 54) CGCTCACGCGCGCGCC 1 chr5:179858596-179859096 ( 69) CACGCACGCGCTCCGA 1 chr12:84912556-84913056 ( 19) TACACGCGCACCCGCA 1 chr20:36092999-36093499 ( 73) CACTGGCACACGCCCT 1 chr11:125625635-12562613 ( 51) CACGGGAACGCGCGCT 1 chr6:53359332-53359832 ( 9) AGCACGCTCGCGCCCT 1 chr8:33484756-33485256 ( 84) CGCGCGCGCGCCCCCG 1 chr19:38849260-38849760 ( 47) CCCGCGCACGCGCAGG 1 chr16:28823904-28824404 ( 42) CACGCGCACGTACGGG 1 chr10:931542-932042 ( 22) AACTCGCGCACTCACC 1 chr21:42893073-42893573 ( 6) CGCGGGTGCGCGCGCA 1 chr15:58770970-58771470 ( 65) CGCGCGGGCGCGCGCT 1 chr12:55830579-55831079 ( 81) CCAACACACACGCCCT 1 chr1:155688305-155688805 ( 63) TACGCGCTCACCCACG 1 chr5:134738224-134738724 ( 36) TAAGCACTCACGCACC 1 chr19:5903605-5904105 ( 71) CGCGCGCACGCGCCGG 1 chr1:29181750-29182250 ( 9) CGAACGCGCGCTCTCT 1 chr16:1827134-1827634 ( 79) CCCGCGTACACTCGCA 1 chr15:68820219-68820719 ( 43) CGCGGGAGCACACGCA 1 chr19:56567398-56567898 ( 83) CCCGCGCGCGCTCGCC 1 chr1:63523058-63523558 ( 41) TGCTCGCGCACACCCG 1 chr5:132556726-132557226 ( 24) CCCGCACGCGTCCACG 1 chr19:10565633-10566133 ( 47) CCCGCGCGCATGCGCC 1 chr5:16935702-16936202 ( 7) CGAGGACGCGCGCCCG 1 chr12:49130654-49131154 ( 74) CGCGCGCGCGTCCACC 1 chr17:58007051-58007551 ( 72) AACACGCACGCGCGGG 1 chr19:55407852-55408352 ( 64) CGCGCGGGCGCGCCCT 1 chr18:49486976-49487476 ( 16) CCCGGGCACACTCACC 1 chr14:73569361-73569861 ( 51) CGCGGGCGCGCGCTCC 1 chr5:72308233-72308733 ( 70) CCTGCGCGCGCACGCT 1 chr7:139359606-139360106 ( 81) GACGGGAGCGCGCACG 1 chr19:36687348-36687848 ( 47) CGCATGCGCACTCCCA 1 chr5:177006485-177006985 ( 51) CGGACGCGCGCGCCCC 1 chr12:93441992-93442492 ( 39) CGCGCAGTCGCGCGCG 1 chr11:76380961-76381461 ( 42) CAGGCGGGCACGCGCA 1 chr19:39402428-39402928 ( 22) GCCAGGCGCACACACG 1 chr7:25125135-25125635 ( 82) CCAGCATGCGCGCGCA 1 chr1:220046262-220046762 ( 11) CGGGTACGCGCACACG 1 chr5:55534315-55534815 ( 44) GGCGCGTACGTACCCA 1 chr1:28736644-28737144 ( 47) TACGCGCGCGCCCGCC 1 chr12:120446200-12044670 ( 43) TACGCGCGGGCGCACT 1 chr1:99849895-99850395 ( 28) CGTGCGCGCACTCGCC 1 chr21:44801607-44802107 ( 58) CGATCGCGCACGCGCC 1 chr1:155562388-155562888 ( 19) TAGACACTCGTACGCG 1 chr1:54886755-54887255 ( 56) GGCACACGAACACCCA 1 chrX:41334352-41334852 ( 32) GGGACGCGCATGCGCG 1 chr12:122225782-12222628 ( 51) CAGACGCACACGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCRCRCGCGCRCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.064 E= 1.3e-101 -66 102 -174 -66 144 -159 43 -1409 -105 122 -200 -216 68 -1409 100 -129 -1409 128 -121 -374 116 -1409 92 -1409 -194 136 -333 -194 123 -1409 69 -94 -316 150 -591 -1409 98 -1409 101 -1409 -1409 127 -1409 11 65 -310 80 -42 -1409 153 -1409 -1409 146 -74 -16 -142 -1409 147 -310 -1409 116 -182 18 11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCRCRCGCGCRCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 174 E= 1.3e-101 0.097701 0.701149 0.103448 0.097701 0.419540 0.114943 0.465517 0.000000 0.074713 0.804598 0.086207 0.034483 0.247126 0.000000 0.689655 0.063218 0.000000 0.839080 0.149425 0.011494 0.344828 0.000000 0.655172 0.000000 0.040230 0.885057 0.034483 0.040230 0.362069 0.000000 0.557471 0.080460 0.017241 0.977011 0.005747 0.000000 0.304598 0.000000 0.695402 0.000000 0.000000 0.833333 0.000000 0.166667 0.241379 0.040230 0.603448 0.114943 0.000000 1.000000 0.000000 0.000000 0.425287 0.206897 0.310345 0.057471 0.000000 0.959770 0.040230 0.000000 0.344828 0.097701 0.390805 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCRCRCGCGCRCR MEME-2 regular expression -------------------------------------------------------------------------------- C[GA]C[GA]C[GA]C[GA]C[GA]C[GA]C[AGC]C[GA] -------------------------------------------------------------------------------- Time 686.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGGRRRRGGAGGVGGMGGMGG MEME-3 width = 22 sites = 54 llr = 672 E-value = 3.1e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGGRRRRGGAGGVGGMGGMGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 242244441263221163:622 pos.-specific C 122::::1::1::42:4::4:: probability G 6458566498178379:7a178 matrix T 1:1:1:11::1:::::::::1: bits 2.7 2.4 2.2 1.9 Relative 1.6 Entropy 1.3 * * (18.0 bits) 1.1 * * ** * ** ** * 0.8 **** ***** ******* 0.5 ********** ******** 0.3 ** ******************* 0.0 ---------------------- Multilevel GGGGGGGAGGAGGCGGAGGAGG consensus AACAAAAG AAG CA CA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGRRRRGGAGGVGGMGGMGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr21:39183105-39183605 - 2 2.94e-11 TGGGACTGAG GACGAAGAGGAGGAGGAGGAGG G chr19:33795412-33795912 + 70 4.45e-11 aaggaaacag gaggaagaggaaggggaggagg agtgggagt chr1:236395217-236395717 + 52 5.05e-09 gagaagaaga agggaggggaaggcggaggagg gcaggggCGC chr12:49060517-49061017 + 26 1.22e-08 CCCCACTCGA GAGGGGGAGAAAGGAGAAGAGG CGGCCCTATT chr3:173395619-173396119 + 55 2.71e-08 TAAACCGGGC GGGGAGAGGGAGGCAGCGGAGG GAGTCCTGGC chr5:128083143-128083643 + 62 2.71e-08 gtgaaggcgt gggaggaaggcggcggaagagg aggTAGCCGC chr1:16366985-16367485 + 35 2.71e-08 GCGCAGGCGC GGGGAGGGGGTGGGGGAGGAGG GAAAGCGGCG chr15:69160463-69160963 - 32 3.16e-08 GAGCCCTGAG GAAGAGAAGGAGACAGCAGAGA AGGGGTGGCT chr17:4710348-4710848 + 38 3.66e-08 CCAGAGCGGG GCCGGGAGGGAGGGGGAAGAGG CGAGAGCGCG chr16:30065002-30065502 - 9 5.63e-08 CACTGGCCCA GGCGTAAGGGAGGCGGAGGAAA GGGCATCG chr22:24555617-24556117 + 72 5.63e-08 CGGCAGGCGG AGTGAGGAGGAAGCGGAGGCGA GACCGCG chr6:136289153-136289653 + 49 6.47e-08 CTGAAGAAAT GGGGGAAGGGTGGAAGAGGAAG ATATGCGCAC chr2:148644407-148644907 + 37 6.47e-08 tgggcaggcg agggaggggaagggagaggaag gagggaggga chr5:132490375-132490875 + 59 9.69e-08 GACTCCGAGT GGAAGAGGGAAGAAGGCAGAGG TTGCCGGGTT chr11:76380961-76381461 - 8 9.69e-08 GAGAAGGCGG AAAGGAGGGGCGGGGGAGGAAG GCTGAGG chr8:38996732-38997232 + 66 1.10e-07 GCAGGGTTGG AAAATGATGGAAGAGGCGGAGG TGGAGGCGAC chr5:149730861-149731361 + 79 1.26e-07 CCACGATGCA GGGGGAAGGGAAGGCGAGGCGG chr12:53220745-53221245 - 44 1.61e-07 GGGTGGGGAG ACGGGAAGGAAGGAGGAGGCAG CGCGCGCCGA chr17:18314872-18315372 - 59 1.82e-07 ACCAACCACT GCCGGGAAGGAGGGGAAAGAGG GGCGGAGTGA chr1:116909855-116910355 + 78 1.82e-07 gcagccggag ctggaagaggaggaggaggaga g chr17:58007051-58007551 + 20 2.06e-07 GGCGCACGGA TATGGGGGGGAGACAGAGGAAG AGAAGCGGAA chr6:63635830-63636330 - 38 2.61e-07 CGCTGCCGCC GCCGAAGAGGAGGAGGAGGGGG CCCGGTGGGT chr17:75182670-75183170 + 53 2.61e-07 CCAGGAGCGG CAGAAGAAGGAGGCGGCAGCGG TGGACGAGGG chr20:34676863-34677363 + 45 5.67e-07 gggcgcgcgg gcggggagggaaggcgaggcgg AGGAGCCTCG chr17:47649622-47650122 - 72 5.67e-07 AGGGAGC GAGGGAGGGAGGAAGGCGGAGG GATATTCGGA chr10:70145803-70146303 - 58 7.72e-07 GCGGGATGAC GAAGTGTCGGAGGACGAGGAGG CGGATCAACT chr16:30065210-30065710 - 13 9.43e-07 AGGGCGGAAC GGGGAAGTGGAGGACGCGGATG GAAAAGTCGG chr5:141618861-141619361 + 64 9.43e-07 CCTACCAATG GGGGAAGGGAGAGGGGCGGAGG GAAGCCGCGG chr1:12618141-12618641 - 23 9.43e-07 CGACGGCGCA GGGGGAGGGGAGGCCGCAGCAG CCACTCAGAG chr3:3126766-3127266 - 71 1.14e-06 TGGCCCAC AGCAGGAAGGAAGGGGCAGCAA CTCACGCCAC chr8:94719716-94720216 + 74 1.14e-06 CCTAGCCTTC GCAGAAACGATGGCGGAGGAAG AAGGT chr9:85940954-85941454 + 29 1.26e-06 GGCTGGGCTG AGAGGggagggggcggcggcgg ccgaggcggc chr21:37072450-37072950 + 71 1.38e-06 GCGCCCCGCA ACAGAAGGGGTGGCGGAGGATA GGGCAGGG chr17:81683700-81684200 + 77 1.52e-06 GTGCGCGCAC TGGAGGGAAAAGGCGGAAGCGG AA chr10:102419478-10241997 + 63 1.52e-06 GAGGCGCGAA CAAAGAGGGGAGGGGGACGAGG CGCGCGGCCG chr7:30594615-30595115 - 61 1.52e-06 GGGCTGTCCA GAGAGGGTGGCGACGGAAGCGG CGCGCGCCGC chr22:29882944-29883444 + 65 1.66e-06 TTGTTGTGGT TGTGAGAAggcggcggcggcgg cggAGTAGCA chr12:63843829-63844329 + 6 1.82e-06 GCAGC AGCGGAAAGGGGGACGCAGAGA AAGGCAGCCT chr1:228486617-228487117 + 12 1.98e-06 GGGTCCGTGC AGGATGAGAGCAGCGGAGGAGG CCCACGCAGG chr16:22436899-22437399 - 57 1.98e-06 CGGTGAGAGA GAGGTGGATGAAGGGGAGGCGA CGTCTCTTCC chr17:41864592-41865092 - 17 1.98e-06 GGAGTTGGCC GACAGGTAGGCGAGGGAGGCGG GAGCGCGGAG chr5:66144092-66144592 + 56 2.36e-06 GACGTTGggg agcgggaaggcaacggcagcgg gatcgggaTG chr12:6689001-6689501 + 5 2.79e-06 gggc gagggagggGAAAAAGCGCAAG GCGCAGCGCG chr1:223846010-223846510 - 55 3.29e-06 ACTCGGAGCC GCCGAGGAGGTGACGGCGGCAG CCCTGGGGCG chr17:39754237-39754737 - 59 4.18e-06 CTCGGGCGCC TGCGGGGAGGAAACGGGGGAGG GGCAGGGGAA chr3:14178261-14178761 - 2 4.52e-06 CAAGGCCCGG CGTGAGGAGGAGGAGGAGGGTG A chr1:200669429-200669929 + 24 4.52e-06 GAACTGTAAG GATGGGAGGAAGGCCGCGCAGG GGCACCAGTT chr6:35731712-35732212 + 48 4.88e-06 cgcggcggga gtgggggaggggagcgaagaga aagtgagagc chr20:47501848-47502348 + 6 4.88e-06 cgggc gagggggtggagtgcgaggcgg aggGAAGAGG chr10:91923633-91924133 - 17 1.06e-05 TAAGCAGGGG TCCAAGACGGTAGCGGAGGCGG CAGTCCTCCG chr19:38849260-38849760 - 16 1.28e-05 GGTCCGGAGC GGGGTGTGGGGGAGCGCAGAGG AAGTAGCTCG chr5:140107506-140108006 + 24 1.55e-05 CACGGAGTTG GGAGGAGGGGTGGGGAACGCGG AGCGCGCGCT chr1:40691629-40692129 + 73 1.85e-05 GTGCGAGGGT GATAGGGAAGCGGCGGCGGGGG GAGGGG chr1:32072714-32073214 - 65 2.32e-05 TCCTGCGGGC AATATGTCGGAGGCGACGGCGG CCGGGAGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGRRRRGGAGGVGGMGGMGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:39183105-39183605 2.9e-11 1_[-3]_77 chr19:33795412-33795912 4.4e-11 69_[+3]_9 chr1:236395217-236395717 5e-09 51_[+3]_27 chr12:49060517-49061017 1.2e-08 25_[+3]_53 chr3:173395619-173396119 2.7e-08 54_[+3]_24 chr5:128083143-128083643 2.7e-08 61_[+3]_17 chr1:16366985-16367485 2.7e-08 34_[+3]_44 chr15:69160463-69160963 3.2e-08 31_[-3]_47 chr17:4710348-4710848 3.7e-08 37_[+3]_41 chr16:30065002-30065502 5.6e-08 8_[-3]_70 chr22:24555617-24556117 5.6e-08 71_[+3]_7 chr6:136289153-136289653 6.5e-08 48_[+3]_30 chr2:148644407-148644907 6.5e-08 36_[+3]_42 chr5:132490375-132490875 9.7e-08 58_[+3]_20 chr11:76380961-76381461 9.7e-08 7_[-3]_71 chr8:38996732-38997232 1.1e-07 65_[+3]_13 chr5:149730861-149731361 1.3e-07 78_[+3] chr12:53220745-53221245 1.6e-07 43_[-3]_35 chr17:18314872-18315372 1.8e-07 58_[-3]_20 chr1:116909855-116910355 1.8e-07 77_[+3]_1 chr17:58007051-58007551 2.1e-07 19_[+3]_59 chr6:63635830-63636330 2.6e-07 37_[-3]_41 chr17:75182670-75183170 2.6e-07 52_[+3]_26 chr20:34676863-34677363 5.7e-07 44_[+3]_34 chr17:47649622-47650122 5.7e-07 71_[-3]_7 chr10:70145803-70146303 7.7e-07 57_[-3]_21 chr16:30065210-30065710 9.4e-07 12_[-3]_66 chr5:141618861-141619361 9.4e-07 63_[+3]_15 chr1:12618141-12618641 9.4e-07 22_[-3]_56 chr3:3126766-3127266 1.1e-06 70_[-3]_8 chr8:94719716-94720216 1.1e-06 73_[+3]_5 chr9:85940954-85941454 1.3e-06 28_[+3]_50 chr21:37072450-37072950 1.4e-06 70_[+3]_8 chr17:81683700-81684200 1.5e-06 76_[+3]_2 chr10:102419478-10241997 1.5e-06 62_[+3]_16 chr7:30594615-30595115 1.5e-06 60_[-3]_18 chr22:29882944-29883444 1.7e-06 64_[+3]_14 chr12:63843829-63844329 1.8e-06 5_[+3]_73 chr1:228486617-228487117 2e-06 11_[+3]_67 chr16:22436899-22437399 2e-06 56_[-3]_22 chr17:41864592-41865092 2e-06 16_[-3]_62 chr5:66144092-66144592 2.4e-06 55_[+3]_23 chr12:6689001-6689501 2.8e-06 4_[+3]_74 chr1:223846010-223846510 3.3e-06 54_[-3]_24 chr17:39754237-39754737 4.2e-06 58_[-3]_20 chr3:14178261-14178761 4.5e-06 1_[-3]_77 chr1:200669429-200669929 4.5e-06 23_[+3]_55 chr6:35731712-35732212 4.9e-06 47_[+3]_31 chr20:47501848-47502348 4.9e-06 5_[+3]_73 chr10:91923633-91924133 1.1e-05 16_[-3]_62 chr19:38849260-38849760 1.3e-05 15_[-3]_63 chr5:140107506-140108006 1.5e-05 23_[+3]_55 chr1:40691629-40692129 1.8e-05 72_[+3]_6 chr1:32072714-32073214 2.3e-05 64_[-3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGRRRRGGAGGVGGMGGMGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGGRRRRGGAGGVGGMGGMGG width=22 seqs=54 chr21:39183105-39183605 ( 2) GACGAAGAGGAGGAGGAGGAGG 1 chr19:33795412-33795912 ( 70) GAGGAAGAGGAAGGGGAGGAGG 1 chr1:236395217-236395717 ( 52) AGGGAGGGGAAGGCGGAGGAGG 1 chr12:49060517-49061017 ( 26) GAGGGGGAGAAAGGAGAAGAGG 1 chr3:173395619-173396119 ( 55) GGGGAGAGGGAGGCAGCGGAGG 1 chr5:128083143-128083643 ( 62) GGGAGGAAGGCGGCGGAAGAGG 1 chr1:16366985-16367485 ( 35) GGGGAGGGGGTGGGGGAGGAGG 1 chr15:69160463-69160963 ( 32) GAAGAGAAGGAGACAGCAGAGA 1 chr17:4710348-4710848 ( 38) GCCGGGAGGGAGGGGGAAGAGG 1 chr16:30065002-30065502 ( 9) GGCGTAAGGGAGGCGGAGGAAA 1 chr22:24555617-24556117 ( 72) AGTGAGGAGGAAGCGGAGGCGA 1 chr6:136289153-136289653 ( 49) GGGGGAAGGGTGGAAGAGGAAG 1 chr2:148644407-148644907 ( 37) AGGGAGGGGAAGGGAGAGGAAG 1 chr5:132490375-132490875 ( 59) GGAAGAGGGAAGAAGGCAGAGG 1 chr11:76380961-76381461 ( 8) AAAGGAGGGGCGGGGGAGGAAG 1 chr8:38996732-38997232 ( 66) AAAATGATGGAAGAGGCGGAGG 1 chr5:149730861-149731361 ( 79) GGGGGAAGGGAAGGCGAGGCGG 1 chr12:53220745-53221245 ( 44) ACGGGAAGGAAGGAGGAGGCAG 1 chr17:18314872-18315372 ( 59) GCCGGGAAGGAGGGGAAAGAGG 1 chr1:116909855-116910355 ( 78) CTGGAAGAGGAGGAGGAGGAGA 1 chr17:58007051-58007551 ( 20) TATGGGGGGGAGACAGAGGAAG 1 chr6:63635830-63636330 ( 38) GCCGAAGAGGAGGAGGAGGGGG 1 chr17:75182670-75183170 ( 53) CAGAAGAAGGAGGCGGCAGCGG 1 chr20:34676863-34677363 ( 45) GCGGGGAGGGAAGGCGAGGCGG 1 chr17:47649622-47650122 ( 72) GAGGGAGGGAGGAAGGCGGAGG 1 chr10:70145803-70146303 ( 58) GAAGTGTCGGAGGACGAGGAGG 1 chr16:30065210-30065710 ( 13) GGGGAAGTGGAGGACGCGGATG 1 chr5:141618861-141619361 ( 64) GGGGAAGGGAGAGGGGCGGAGG 1 chr1:12618141-12618641 ( 23) GGGGGAGGGGAGGCCGCAGCAG 1 chr3:3126766-3127266 ( 71) AGCAGGAAGGAAGGGGCAGCAA 1 chr8:94719716-94720216 ( 74) GCAGAAACGATGGCGGAGGAAG 1 chr9:85940954-85941454 ( 29) AGAGGGGAGGGGGCGGCGGCGG 1 chr21:37072450-37072950 ( 71) ACAGAAGGGGTGGCGGAGGATA 1 chr17:81683700-81684200 ( 77) TGGAGGGAAAAGGCGGAAGCGG 1 chr10:102419478-10241997 ( 63) CAAAGAGGGGAGGGGGACGAGG 1 chr7:30594615-30595115 ( 61) GAGAGGGTGGCGACGGAAGCGG 1 chr22:29882944-29883444 ( 65) TGTGAGAAGGCGGCGGCGGCGG 1 chr12:63843829-63844329 ( 6) AGCGGAAAGGGGGACGCAGAGA 1 chr1:228486617-228487117 ( 12) AGGATGAGAGCAGCGGAGGAGG 1 chr16:22436899-22437399 ( 57) GAGGTGGATGAAGGGGAGGCGA 1 chr17:41864592-41865092 ( 17) GACAGGTAGGCGAGGGAGGCGG 1 chr5:66144092-66144592 ( 56) AGCGGGAAGGCAACGGCAGCGG 1 chr12:6689001-6689501 ( 5) GAGGGAGGGGAAAAAGCGCAAG 1 chr1:223846010-223846510 ( 55) GCCGAGGAGGTGACGGCGGCAG 1 chr17:39754237-39754737 ( 59) TGCGGGGAGGAAACGGGGGAGG 1 chr3:14178261-14178761 ( 2) CGTGAGGAGGAGGAGGAGGGTG 1 chr1:200669429-200669929 ( 24) GATGGGAGGAAGGCCGCGCAGG 1 chr6:35731712-35732212 ( 48) GTGGGGGAGGGGAGCGAAGAGA 1 chr20:47501848-47502348 ( 6) GAGGGGGTGGAGTGCGAGGCGG 1 chr10:91923633-91924133 ( 17) TCCAAGACGGTAGCGGAGGCGG 1 chr19:38849260-38849760 ( 16) GGGGTGTGGGGGAGCGCAGAGG 1 chr5:140107506-140108006 ( 24) GGAGGAGGGGTGGGGAACGCGG 1 chr1:40691629-40692129 ( 73) GATAGGGAAGCGGCGGCGGGGG 1 chr1:32072714-32073214 ( 65) AATATGTCGGAGGCGACGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGRRRRGGAGGVGGMGGMGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.4277 E= 3.1e-039 64 -222 78 -74 119 -105 36 -206 26 -64 42 -25 64 -1240 113 -1240 119 -1240 58 -25 126 -1240 86 -1240 126 -1240 68 -106 147 -222 30 -106 -147 -1240 142 -306 26 -1240 124 -1240 199 -122 -164 -25 75 -1240 110 -1240 53 -1240 113 -306 64 30 -5 -1240 -25 -90 99 -1240 -147 -1240 145 -1240 199 10 -422 -1240 85 -322 99 -1240 -1240 -322 148 -1240 194 3 -264 -1240 40 -1240 110 -147 11 -1240 127 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGRRRRGGAGGVGGMGGMGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 54 E= 3.1e-039 0.240741 0.074074 0.592593 0.092593 0.351852 0.166667 0.444444 0.037037 0.185185 0.222222 0.462963 0.129630 0.240741 0.000000 0.759259 0.000000 0.351852 0.000000 0.518519 0.129630 0.370370 0.000000 0.629630 0.000000 0.370370 0.000000 0.555556 0.074074 0.425926 0.074074 0.425926 0.074074 0.055556 0.000000 0.925926 0.018519 0.185185 0.000000 0.814815 0.000000 0.611111 0.148148 0.111111 0.129630 0.259259 0.000000 0.740741 0.000000 0.222222 0.000000 0.759259 0.018519 0.240741 0.425926 0.333333 0.000000 0.129630 0.185185 0.685185 0.000000 0.055556 0.000000 0.944444 0.000000 0.611111 0.370370 0.018519 0.000000 0.277778 0.037037 0.685185 0.000000 0.000000 0.037037 0.962963 0.000000 0.592593 0.351852 0.055556 0.000000 0.203704 0.000000 0.740741 0.055556 0.166667 0.000000 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGRRRRGGAGGVGGMGGMGG MEME-3 regular expression -------------------------------------------------------------------------------- [GA][GA][GC][GA][GA][GA][GA][AG]GGA[GA][GA][CGA]GG[AC][GA]G[AC][GA]G -------------------------------------------------------------------------------- Time 968.71 secs. ******************************************************************************** ******************************************************************************** MOTIF VGSRRRSGMGCGCGGGVGCGVG MEME-4 width = 22 sites = 61 llr = 655 E-value = 2.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGSRRRSGMGCGCGGGVGCGVG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 312464::5:1:2:2232113: pos.-specific C 2:3::14:3:616:212:7:3: probability G 5956355a1a27296637293a matrix T ::::::1::::1::::1:::1: bits 2.7 2.4 2.2 1.9 Relative 1.6 * Entropy 1.3 * * * * * (15.5 bits) 1.1 * * * * * * * 0.8 * *** *** * * * * 0.5 * *** *** ***** *** * 0.3 ********************** 0.0 ---------------------- Multilevel GGGGAGGGAGCGCGGGGGCGAG consensus A CAGAC C G AAA C sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGSRRRSGMGCGCGGGVGCGVG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:6937735-6938235 + 54 2.59e-10 gcgcgcgcga agaaaaggagcgcgagcgcgag cgggaacgcg chr2:148644407-148644907 + 60 5.99e-09 gagaggaagg agggagggagggagagggcgag gCGCGTTCCC chr17:44503279-44503779 + 8 1.40e-08 GCAGCCG AGGGAGGGAGCGAGAATGCGCG TCCTGACGGG chr16:30698487-30698987 + 33 1.71e-08 CGCGTGCCTg agcgagcgagcgagcgagcgag cCCTGAGAGG chr5:139341512-139342012 - 39 6.19e-08 CGAAGCCACT AGAGAGCGCGCGCGAGAACGCG CGACCCCGAA chr2:85616066-85616566 + 17 1.02e-07 TCGCGTCAag cgggagcgagatcgggagcggg agcctgaggc chr7:27662672-27663172 + 68 1.02e-07 cccacgcgcg AGGGAAGGAGCGCGGAGCCGAG AGGAGCGGCC chr5:139293659-139294159 - 62 1.91e-07 CGCAACGCGG AGGGAGGCAGAGCGGGAGCGAG CAAGAAAGGC chr6:85642682-85643182 - 67 2.97e-07 GCGCGCGCAC CGGGAGCGCGCTCGGAGGCGAG TGGAACTGGA chr1:36088752-36089252 - 2 2.97e-07 CAGGCAGCCT CGGAAGCGCGAGAGGGAGCGGG C chr2:169364330-169364830 + 9 3.94e-07 GCTGGCGG GAGGGAGGAGCGCGAGTGCGGG AGGGGCTGGG chr12:22335138-22335638 + 50 4.52e-07 cgttcacggg cgcaagcgagcgcgcgcacgAG GAGGTGCGTG chr12:64824376-64824876 - 31 5.91e-07 AGATCGCTCG AGGCGGGGAGGGCGGGAGCGAG CGAGCGAGCG chr6:36423156-36423656 + 47 9.85e-07 TCTGTGGTGG AAAAAGCGCGCGCGCGGACGAG CAGGTTAGGC chr7:87933896-87934396 - 3 9.85e-07 CCCGCGCGCA GGCAAGGGCGCGCGCAGGAGAG TC chr16:21519959-21520459 - 75 1.11e-06 CGCC GGCAGGCGAGGGCGAGGGCGTG ACCCTGCAGG chr16:29613238-29613738 - 71 1.11e-06 GCGGCGCC GGCAGGCGAGGGCGAGGGCGTG ACCCTGCAGC chr11:20387371-20387871 - 73 1.78e-06 CGACTC CAGGAACGAGCGCGAGCACAAG CGCGAACCCG chr7:116671801-116672301 + 41 1.78e-06 TCGTGGGCGG GGCAGAGGCGGGAGGAAACGCG ACCCCCGCGG chr5:151080552-151081052 - 27 2.23e-06 CGGTGGCGGC GGGGAGCGAGCTGGGGAAGGTG GCTTGTGCAC chr12:95548182-95548682 - 25 2.23e-06 GCGAGCTGGG GGAGAACGGGCGCGGGCGAGGG CTTCGGGGAC chr17:77958153-77958653 - 61 2.50e-06 TGCACCGCGC GGGGAGCGCGCCGGGGTGCGAG CGGTGCGCGC chr14:66508025-66508525 - 75 3.44e-06 GGGA GGGGAAGGAGTCAGGGCGCGCG GCCCCAAGTC chr5:95731501-95732001 - 70 3.82e-06 CCTCGGAAC AGGAAGTGCGGGGGACAGCGCG CGGCGAGGAT chr12:56104320-56104820 - 69 4.23e-06 AGCGCGAGCA AGCAAGGGAGCGGGCAGGCAGG CGAGAGCGAG chr5:141618861-141619361 - 10 4.23e-06 GGGCGGAAGT GGGGCAGGCGGGCGGGAGCGAG GCGTCGTCG chr6:116370918-116371418 + 22 4.68e-06 AGGGGCGCGC AAGGGACGAGCTGGGGCGCGCG GCGCAACTTT chr14:104815951-10481645 - 29 4.68e-06 CCGCGCTTTT GGGAGGGGAGAGCGACAACACG GAAGTCGGCA chr20:25696457-25696957 + 57 4.68e-06 CTTCCTGCGC CGGAAGGGCGCGCTGCAGAGAG GGACCCGCAG chr10:91923633-91924133 + 59 4.68e-06 CCGGCCGCCG CGGGGACGAGCTCGGGTAGGCG GCAGGGCAGA chr12:123601858-12360235 + 75 5.17e-06 CGACCGACGC GGCGAAGGAGCGCGCCATGGAG CATG chr19:40603702-40604202 + 54 5.70e-06 CCTGGGGCCC AGCGAGGGCGCGCAGAGGGGAG TGGAGGCGCG chr12:28190401-28190901 + 13 5.70e-06 GCGCAGCGGC GGCAGCGGAGAGCGAGAGAGGG GAGCAGGTAA chr10:128150038-12815053 - 7 5.70e-06 GCGCATCCTT GGGAAACGGCCTCGGGAGCGCG CTGTGG chr12:46268778-46269278 - 6 5.70e-06 GGCGCACAGG AGGGGAGGAGACCGCGCGCGGG ACGGG chr1:212858067-212858567 + 63 6.28e-06 GCGCGCCACC GGGGAAGGAGCGGTGGGCCGAG GGGTTGGAGG chr19:32405414-32405914 + 29 6.28e-06 AGACGAGGCG GGGAACCGCGGGAGGAGGCGGG GCCTAGTGTT chr4:102827041-102827541 - 5 6.28e-06 CTCTCCTGCT GGAGGAGGAGGGGGAATGGGCG CGTC chr1:231422355-231422855 + 13 6.91e-06 CCGCGAGCGG CGGAAAGGCGTGGGGCAGCGCG GCAGCGCCTA chr5:134738224-134738724 + 64 7.60e-06 TCACAGGCTC CGGGACCGCGCTCGGGGGCGGG TCTATAGTGG chr13:106567444-10656794 - 53 7.60e-06 CGTGTCCCGG CGCGAGCGGGACCGGGAGCGCG CCTCGTCCCC chr19:38224163-38224663 - 22 1.00e-05 AGGATATGTG GACGAGTGAGGGCGGGTGAGTG ACGGTGCGTG chr2:135741497-135741997 - 51 1.00e-05 CAGCGGCACC CGGAGACGCGCGCTAGCGCGCG CGAGAACACC chr17:60599802-60600302 + 51 1.10e-05 GCGCGGCCGT CGCAGGCGGGAGCGAAGGCGGG GACGGAGGGC chr6:89081563-89082063 + 69 1.10e-05 GCGCCCATGA AGGAGGCGAGGCCGGGTGGGGG CAGCTGGGGA chr12:50057195-50057695 + 77 1.10e-05 AAAGCGGCCG CGAGGAGGGGCGAGGCGGCGCG GG chr16:75148358-75148858 - 6 1.10e-05 GGCGCAGGGC GGCGAAGACGCGCGGAGACGGG GGCTC chr16:29805426-29805926 - 17 1.20e-05 TTGCCGAGCG GGAGAATGGGGGAGCGCGCGCG CCGGGGGCAC chr1:154220567-154221067 + 79 1.31e-05 GACGCAggaa ggcaagtgggcgggggaaggcg chr6:31739748-31740248 - 42 1.42e-05 CCACGAGCCT GCAAAAGGAGCGCGCCGGCGCG TGAGCGAGGT chr14:23006865-23007365 + 29 1.55e-05 GCTAGGCAGA GGCGGAGGCGGGCGCGCGGGAG ACAGAACTAT chr14:104752839-10475333 - 37 1.55e-05 GCGGGTTTGA GGAGAGGGAGCGACGCGGCGCG TCATAGGCTG chr6:16759815-16760315 - 51 1.69e-05 CGCAGGGGGC AGGGAAGGGGGCCGGACGGGCG GAGCGAGAGG chr3:173395619-173396119 + 11 1.83e-05 TCCGACCGGC GGGAGGGGCGCGCAGGGGAGGG GACGCTGTGC chr3:17742469-17742969 - 12 1.83e-05 GGTGGAGCGC GGGGAGGGCGCGCGGCGGGAGG CGGCCGCCGT chr5:73215989-73216489 + 69 1.99e-05 CAGAGCACGC GGAGAGGGACCTGGAGCGCGGG AGCCAGGACG chr19:5622598-5623098 - 14 2.34e-05 CGCGGCCGCA AAGCGGGGCGGGAGGAAACGAG TGCGTTTTCC chr7:44796254-44796754 + 12 2.53e-05 CCGCAGCCAC CGCGACGGAGCCCGCAGGCGGG AACCTGCCTC chr17:75182670-75183170 + 76 2.74e-05 CGGCAGCGGT GGACGAGGGGAGAGGGTGCGCG CAC chr19:39402428-39402928 - 62 3.20e-05 TGGCCGAGTG CGCGGGCGAGCTGGGGATCGTG TACCCGCGGC chr6:53359332-53359832 - 77 3.20e-05 AG GAAGGGTCAGCGCGGGGACGAG GTCTGGTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGSRRRSGMGCGCGGGVGCGVG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:6937735-6938235 2.6e-10 53_[+4]_25 chr2:148644407-148644907 6e-09 59_[+4]_19 chr17:44503279-44503779 1.4e-08 7_[+4]_71 chr16:30698487-30698987 1.7e-08 32_[+4]_46 chr5:139341512-139342012 6.2e-08 38_[-4]_40 chr2:85616066-85616566 1e-07 16_[+4]_62 chr7:27662672-27663172 1e-07 67_[+4]_11 chr5:139293659-139294159 1.9e-07 61_[-4]_17 chr6:85642682-85643182 3e-07 66_[-4]_12 chr1:36088752-36089252 3e-07 1_[-4]_77 chr2:169364330-169364830 3.9e-07 8_[+4]_70 chr12:22335138-22335638 4.5e-07 49_[+4]_29 chr12:64824376-64824876 5.9e-07 30_[-4]_48 chr6:36423156-36423656 9.8e-07 46_[+4]_32 chr7:87933896-87934396 9.8e-07 2_[-4]_76 chr16:21519959-21520459 1.1e-06 74_[-4]_4 chr16:29613238-29613738 1.1e-06 70_[-4]_8 chr11:20387371-20387871 1.8e-06 72_[-4]_6 chr7:116671801-116672301 1.8e-06 40_[+4]_38 chr5:151080552-151081052 2.2e-06 26_[-4]_52 chr12:95548182-95548682 2.2e-06 24_[-4]_54 chr17:77958153-77958653 2.5e-06 60_[-4]_18 chr14:66508025-66508525 3.4e-06 74_[-4]_4 chr5:95731501-95732001 3.8e-06 69_[-4]_9 chr12:56104320-56104820 4.2e-06 68_[-4]_10 chr5:141618861-141619361 4.2e-06 9_[-4]_69 chr6:116370918-116371418 4.7e-06 21_[+4]_57 chr14:104815951-10481645 4.7e-06 28_[-4]_50 chr20:25696457-25696957 4.7e-06 56_[+4]_22 chr10:91923633-91924133 4.7e-06 58_[+4]_20 chr12:123601858-12360235 5.2e-06 74_[+4]_4 chr19:40603702-40604202 5.7e-06 53_[+4]_25 chr12:28190401-28190901 5.7e-06 12_[+4]_66 chr10:128150038-12815053 5.7e-06 6_[-4]_72 chr12:46268778-46269278 5.7e-06 5_[-4]_73 chr1:212858067-212858567 6.3e-06 62_[+4]_16 chr19:32405414-32405914 6.3e-06 28_[+4]_50 chr4:102827041-102827541 6.3e-06 4_[-4]_74 chr1:231422355-231422855 6.9e-06 12_[+4]_66 chr5:134738224-134738724 7.6e-06 63_[+4]_15 chr13:106567444-10656794 7.6e-06 52_[-4]_26 chr19:38224163-38224663 1e-05 21_[-4]_57 chr2:135741497-135741997 1e-05 50_[-4]_28 chr17:60599802-60600302 1.1e-05 50_[+4]_28 chr6:89081563-89082063 1.1e-05 68_[+4]_10 chr12:50057195-50057695 1.1e-05 76_[+4]_2 chr16:75148358-75148858 1.1e-05 5_[-4]_73 chr16:29805426-29805926 1.2e-05 16_[-4]_62 chr1:154220567-154221067 1.3e-05 78_[+4] chr6:31739748-31740248 1.4e-05 41_[-4]_37 chr14:23006865-23007365 1.6e-05 28_[+4]_50 chr14:104752839-10475333 1.6e-05 36_[-4]_42 chr6:16759815-16760315 1.7e-05 50_[-4]_28 chr3:173395619-173396119 1.8e-05 10_[+4]_68 chr3:17742469-17742969 1.8e-05 11_[-4]_67 chr5:73215989-73216489 2e-05 68_[+4]_10 chr19:5622598-5623098 2.3e-05 13_[-4]_65 chr7:44796254-44796754 2.5e-05 11_[+4]_67 chr17:75182670-75183170 2.7e-05 75_[+4]_3 chr19:39402428-39402928 3.2e-05 61_[-4]_17 chr6:53359332-53359832 3.2e-05 76_[-4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGSRRRSGMGCGCGGGVGCGVG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGSRRRSGMGCGCGGGVGCGVG width=22 seqs=61 chr12:6937735-6938235 ( 54) AGAAAAGGAGCGCGAGCGCGAG 1 chr2:148644407-148644907 ( 60) AGGGAGGGAGGGAGAGGGCGAG 1 chr17:44503279-44503779 ( 8) AGGGAGGGAGCGAGAATGCGCG 1 chr16:30698487-30698987 ( 33) AGCGAGCGAGCGAGCGAGCGAG 1 chr5:139341512-139342012 ( 39) AGAGAGCGCGCGCGAGAACGCG 1 chr2:85616066-85616566 ( 17) CGGGAGCGAGATCGGGAGCGGG 1 chr7:27662672-27663172 ( 68) AGGGAAGGAGCGCGGAGCCGAG 1 chr5:139293659-139294159 ( 62) AGGGAGGCAGAGCGGGAGCGAG 1 chr6:85642682-85643182 ( 67) CGGGAGCGCGCTCGGAGGCGAG 1 chr1:36088752-36089252 ( 2) CGGAAGCGCGAGAGGGAGCGGG 1 chr2:169364330-169364830 ( 9) GAGGGAGGAGCGCGAGTGCGGG 1 chr12:22335138-22335638 ( 50) CGCAAGCGAGCGCGCGCACGAG 1 chr12:64824376-64824876 ( 31) AGGCGGGGAGGGCGGGAGCGAG 1 chr6:36423156-36423656 ( 47) AAAAAGCGCGCGCGCGGACGAG 1 chr7:87933896-87934396 ( 3) GGCAAGGGCGCGCGCAGGAGAG 1 chr16:21519959-21520459 ( 75) GGCAGGCGAGGGCGAGGGCGTG 1 chr16:29613238-29613738 ( 71) GGCAGGCGAGGGCGAGGGCGTG 1 chr11:20387371-20387871 ( 73) CAGGAACGAGCGCGAGCACAAG 1 chr7:116671801-116672301 ( 41) GGCAGAGGCGGGAGGAAACGCG 1 chr5:151080552-151081052 ( 27) GGGGAGCGAGCTGGGGAAGGTG 1 chr12:95548182-95548682 ( 25) GGAGAACGGGCGCGGGCGAGGG 1 chr17:77958153-77958653 ( 61) GGGGAGCGCGCCGGGGTGCGAG 1 chr14:66508025-66508525 ( 75) GGGGAAGGAGTCAGGGCGCGCG 1 chr5:95731501-95732001 ( 70) AGGAAGTGCGGGGGACAGCGCG 1 chr12:56104320-56104820 ( 69) AGCAAGGGAGCGGGCAGGCAGG 1 chr5:141618861-141619361 ( 10) GGGGCAGGCGGGCGGGAGCGAG 1 chr6:116370918-116371418 ( 22) AAGGGACGAGCTGGGGCGCGCG 1 chr14:104815951-10481645 ( 29) GGGAGGGGAGAGCGACAACACG 1 chr20:25696457-25696957 ( 57) CGGAAGGGCGCGCTGCAGAGAG 1 chr10:91923633-91924133 ( 59) CGGGGACGAGCTCGGGTAGGCG 1 chr12:123601858-12360235 ( 75) GGCGAAGGAGCGCGCCATGGAG 1 chr19:40603702-40604202 ( 54) AGCGAGGGCGCGCAGAGGGGAG 1 chr12:28190401-28190901 ( 13) GGCAGCGGAGAGCGAGAGAGGG 1 chr10:128150038-12815053 ( 7) GGGAAACGGCCTCGGGAGCGCG 1 chr12:46268778-46269278 ( 6) AGGGGAGGAGACCGCGCGCGGG 1 chr1:212858067-212858567 ( 63) GGGGAAGGAGCGGTGGGCCGAG 1 chr19:32405414-32405914 ( 29) GGGAACCGCGGGAGGAGGCGGG 1 chr4:102827041-102827541 ( 5) GGAGGAGGAGGGGGAATGGGCG 1 chr1:231422355-231422855 ( 13) CGGAAAGGCGTGGGGCAGCGCG 1 chr5:134738224-134738724 ( 64) CGGGACCGCGCTCGGGGGCGGG 1 chr13:106567444-10656794 ( 53) CGCGAGCGGGACCGGGAGCGCG 1 chr19:38224163-38224663 ( 22) GACGAGTGAGGGCGGGTGAGTG 1 chr2:135741497-135741997 ( 51) CGGAGACGCGCGCTAGCGCGCG 1 chr17:60599802-60600302 ( 51) CGCAGGCGGGAGCGAAGGCGGG 1 chr6:89081563-89082063 ( 69) AGGAGGCGAGGCCGGGTGGGGG 1 chr12:50057195-50057695 ( 77) CGAGGAGGGGCGAGGCGGCGCG 1 chr16:75148358-75148858 ( 6) GGCGAAGACGCGCGGAGACGGG 1 chr16:29805426-29805926 ( 17) GGAGAATGGGGGAGCGCGCGCG 1 chr1:154220567-154221067 ( 79) GGCAAGTGGGCGGGGGAAGGCG 1 chr6:31739748-31740248 ( 42) GCAAAAGGAGCGCGCCGGCGCG 1 chr14:23006865-23007365 ( 29) GGCGGAGGCGGGCGCGCGGGAG 1 chr14:104752839-10475333 ( 37) GGAGAGGGAGCGACGCGGCGCG 1 chr6:16759815-16760315 ( 51) AGGGAAGGGGGCCGGACGGGCG 1 chr3:173395619-173396119 ( 11) GGGAGGGGCGCGCAGGGGAGGG 1 chr3:17742469-17742969 ( 12) GGGGAGGGCGCGCGGCGGGAGG 1 chr5:73215989-73216489 ( 69) GGAGAGGGACCTGGAGCGCGGG 1 chr19:5622598-5623098 ( 14) AAGCGGGGCGGGAGGAAACGAG 1 chr7:44796254-44796754 ( 12) CGCGACGGAGCCCGCAGGCGGG 1 chr17:75182670-75183170 ( 76) GGACGAGGGGAGAGGGTGCGCG 1 chr19:39402428-39402928 ( 62) CGCGGGCGAGCTGGGGATCGTG 1 chr6:53359332-53359832 ( 77) GAAGGGTCAGCGCGGGGACGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGSRRRSGMGCGCGGGVGCGVG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.2911 E= 2.9e-009 85 -49 46 -1257 -43 -439 133 -1257 35 -23 56 -1257 123 -281 77 -1257 205 -439 -1 -1257 135 -240 65 -1257 -1257 12 65 -91 -323 -340 146 -1257 177 -8 -123 -1257 -1257 -340 148 -1257 -6 73 -49 -223 -1257 -159 109 -6 35 85 -94 -1257 -223 -439 138 -165 67 -94 73 -1257 57 -123 85 -1257 109 -81 -1 -23 35 -340 109 -223 -65 109 -108 -1257 -123 -1257 143 -1257 109 -8 -40 -91 -1257 -1257 153 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGSRRRSGMGCGCGGGVGCGVG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 61 E= 2.9e-009 0.278689 0.245902 0.475410 0.000000 0.114754 0.016393 0.868852 0.000000 0.196721 0.295082 0.508197 0.000000 0.360656 0.049180 0.590164 0.000000 0.639344 0.016393 0.344262 0.000000 0.393443 0.065574 0.540984 0.000000 0.000000 0.377049 0.540984 0.081967 0.016393 0.032787 0.950820 0.000000 0.524590 0.327869 0.147541 0.000000 0.000000 0.032787 0.967213 0.000000 0.147541 0.573770 0.245902 0.032787 0.000000 0.114754 0.737705 0.147541 0.196721 0.622951 0.180328 0.000000 0.032787 0.016393 0.901639 0.049180 0.245902 0.180328 0.573770 0.000000 0.229508 0.147541 0.622951 0.000000 0.327869 0.196721 0.344262 0.131148 0.196721 0.032787 0.737705 0.032787 0.098361 0.737705 0.163934 0.000000 0.065574 0.000000 0.934426 0.000000 0.327869 0.327869 0.262295 0.081967 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGSRRRSGMGCGCGGGVGCGVG MEME-4 regular expression -------------------------------------------------------------------------------- [GAC]G[GC][GA][AG][GA][GC]G[AC]G[CG]GCG[GA][GA][GA]GCG[ACG]G -------------------------------------------------------------------------------- Time 1241.95 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 width = 27 sites = 8 llr = 187 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::15:31:3::1::::a133::a:::: pos.-specific C a39:5::955484::::3::1::::36 probability G :8:33591:141:a9a:5:39::a::: matrix T :::333::343:6:1::185:a::a84 bits 2.7 * ** * 2.4 * ** * 2.2 * ** * 1.9 * * ** * Relative 1.6 * * ** * ***** Entropy 1.3 * ** ** * ***** (33.7 bits) 1.1 * * ** ***** * ******* 0.8 **** ** ***** ********* 0.5 **** ***** ****** ********* 0.3 ***************** ********* 0.0 --------------------------- Multilevel CGCACGGCCCCCTGGGAGTTGTAGTTC consensus C GGA ATG C CAA CT sequence TTT T T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr1:28581717-28582217 + 31 1.20e-13 GCCCGCGTGG CGCACAGCTGCCTGGGAGTTGTAGTTT GCTCGCCCCG chr19:13905918-13906418 + 63 3.67e-13 TGCGCGCCCA CGCACTACCTGCCGGGAGTTGTAGTTT CGGCTCGGCA chr17:78254321-78254821 + 45 1.83e-12 GGGAGCGAGC CCCGTGGCACGCTGGGAGTTGTAGTTC GCGCTCCCTC chr3:50292259-50292759 - 36 4.07e-12 GTCGCCTGCG CGCTCAGGCCTCTGGGATTAGTAGTTT TAGCCTCGTG chr2:96265832-96266332 + 52 2.47e-11 GCCGGCTCTG CGCAGGGCCTCACGGGACTGGTAGTTC GAGGCGGTCC chr1:36224110-36224610 - 52 5.66e-11 ACGGCGTAGA CCCGCTGCCTCCTGGGAAATGTAGTCC TACGCCCTCC chr1:223992477-223992977 - 4 1.42e-10 CCGCGAGTTC CGATTGGCTCTGCGTGAGTGGTAGTTC CCT chr12:56104320-56104820 - 8 1.58e-10 CGGGCTGAGG CGCAGGGCACGCTGGGACAACTAGTCC TCTCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:28581717-28582217 1.2e-13 30_[+5]_43 chr19:13905918-13906418 3.7e-13 62_[+5]_11 chr17:78254321-78254821 1.8e-12 44_[+5]_29 chr3:50292259-50292759 4.1e-12 35_[-5]_38 chr2:96265832-96266332 2.5e-11 51_[+5]_22 chr1:36224110-36224610 5.7e-11 51_[-5]_22 chr1:223992477-223992977 1.4e-10 3_[-5]_70 chr12:56104320-56104820 1.6e-10 7_[-5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCDSGGCCYBCYGGGASTDGTAGTTY width=27 seqs=8 chr1:28581717-28582217 ( 31) CGCACAGCTGCCTGGGAGTTGTAGTTT 1 chr19:13905918-13906418 ( 63) CGCACTACCTGCCGGGAGTTGTAGTTT 1 chr17:78254321-78254821 ( 45) CCCGTGGCACGCTGGGAGTTGTAGTTC 1 chr3:50292259-50292759 ( 36) CGCTCAGGCCTCTGGGATTAGTAGTTT 1 chr2:96265832-96266332 ( 52) CGCAGGGCCTCACGGGACTGGTAGTTC 1 chr1:36224110-36224610 ( 52) CCCGCTGCCTCCTGGGAAATGTAGTCC 1 chr1:223992477-223992977 ( 4) CGATTGGCTCTGCGTGAGTGGTAGTTC 1 chr12:56104320-56104820 ( 8) CGCAGGGCACGCTGGGACAACTAGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 11.5898 E= 1.1e-003 -965 153 -965 -965 -965 -47 112 -965 -30 134 -965 -965 170 -965 -47 70 -965 53 -47 70 70 -965 53 70 -30 -965 134 -965 -965 134 -146 -965 70 53 -965 70 -965 53 -146 128 -965 12 12 70 -30 112 -146 -965 -965 12 -965 202 -965 -965 153 -965 -965 -965 134 -30 -965 -965 153 -965 270 -965 -965 -965 -30 -47 53 -30 70 -965 -965 228 70 -965 -47 170 -965 -146 134 -965 -965 -965 -965 270 270 -965 -965 -965 -965 -965 153 -965 -965 -965 -965 270 -965 -47 -965 228 -965 85 -965 128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 8 E= 1.1e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.125000 0.875000 0.000000 0.000000 0.500000 0.000000 0.250000 0.250000 0.000000 0.500000 0.250000 0.250000 0.250000 0.000000 0.500000 0.250000 0.125000 0.000000 0.875000 0.000000 0.000000 0.875000 0.125000 0.000000 0.250000 0.500000 0.000000 0.250000 0.000000 0.500000 0.125000 0.375000 0.000000 0.375000 0.375000 0.250000 0.125000 0.750000 0.125000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.250000 0.500000 0.125000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.500000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.625000 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCDSGGCCYBCYGGGASTDGTAGTTY MEME-5 regular expression -------------------------------------------------------------------------------- C[GC]C[AGT][CGT][GAT]GC[CAT][CT][CGT]C[TC]GGGA[GC][TA][TAG]GTAGT[TC][CT] -------------------------------------------------------------------------------- Time 1507.54 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 width = 47 sites = 2 llr = 128 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 Description -------------------------------------------------------------------------------- Simplified A a::a:::::5::a::a::a:::::a::::::::a::a:::::a:::: pos.-specific C :::::::a:5aa:a:::::5::aa:a:aa5::::::::a:::::::: probability G ::a::aa:a:::::a::a::aa::::a::5::a:a::a:a:a::a:: matrix T :a::a:::::::::::a::5::::::::::aa:::a::::a::a:aa bits 2.7 ** ** * ** * * ** * ** * ** ** 2.4 ** ** * ** * * ** * ** * ** ** 2.2 ** ** * ** * * ** * ** * ** ** 1.9 ** ** * ** * * ** * ** * ** ** Relative 1.6 ********* ********* ********* ***************** Entropy 1.3 ********* ********* ********* ***************** (92.3 bits) 1.1 ***************************** ***************** 0.8 ***************************** ***************** 0.5 *********************************************** 0.3 *********************************************** 0.0 ----------------------------------------------- Multilevel ATGATGGCGACCACGATGACGGCCACGCCCTTGAGTAGCGTGATGTT consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------------- chr16:21519959-21520459 + 16 9.88e-29 GCCCGAGCTC ATGATGGCGACCACGATGACGGCCACGCCCTTGAGTAGCGTGATGTT CCCCTGCAGG chr16:29613238-29613738 + 12 9.88e-29 GCCCGAGCCG ATGATGGCGCCCACGATGATGGCCACGCCGTTGAGTAGCGTGATGTT CCGCTGCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:21519959-21520459 9.9e-29 15_[+6]_38 chr16:29613238-29613738 9.9e-29 11_[+6]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT width=47 seqs=2 chr16:21519959-21520459 ( 16) ATGATGGCGACCACGATGACGGCCACGCCCTTGAGTAGCGTGATGTT 1 chr16:29613238-29613738 ( 12) ATGATGGCGCCCACGATGATGGCCACGCCGTTGAGTAGCGTGATGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 47 n= 32400 bayes= 13.9836 E= 3.0e+003 269 -765 -765 -765 -765 -765 -765 269 -765 -765 153 -765 269 -765 -765 -765 -765 -765 -765 269 -765 -765 153 -765 -765 -765 153 -765 -765 153 -765 -765 -765 -765 153 -765 169 53 -765 -765 -765 153 -765 -765 -765 153 -765 -765 269 -765 -765 -765 -765 153 -765 -765 -765 -765 153 -765 269 -765 -765 -765 -765 -765 -765 269 -765 -765 153 -765 269 -765 -765 -765 -765 53 -765 169 -765 -765 153 -765 -765 -765 153 -765 -765 153 -765 -765 -765 153 -765 -765 269 -765 -765 -765 -765 153 -765 -765 -765 -765 153 -765 -765 153 -765 -765 -765 153 -765 -765 -765 53 53 -765 -765 -765 -765 269 -765 -765 -765 269 -765 -765 153 -765 269 -765 -765 -765 -765 -765 153 -765 -765 -765 -765 269 269 -765 -765 -765 -765 -765 153 -765 -765 153 -765 -765 -765 -765 153 -765 -765 -765 -765 269 -765 -765 153 -765 269 -765 -765 -765 -765 -765 -765 269 -765 -765 153 -765 -765 -765 -765 269 -765 -765 -765 269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 47 nsites= 2 E= 3.0e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGGCGMCCACGATGAYGGCCACGCCSTTGAGTAGCGTGATGTT MEME-6 regular expression -------------------------------------------------------------------------------- ATGATGGCG[AC]CCACGATGA[CT]GGCCACGCC[CG]TTGAGTAGCGTGATGTT -------------------------------------------------------------------------------- Time 1780.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CWTTTCCTKCWTT MEME-7 width = 13 sites = 6 llr = 99 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWTTTCCTKCWTT MEME-7 Description -------------------------------------------------------------------------------- Simplified A :72::2::::5:: pos.-specific C a:2:28a::8::: probability G ::::::::5:::: matrix T :37a8::a525aa bits 2.7 * * ** 2.4 * * ** 2.2 * * ** 1.9 * ** * ** Relative 1.6 ** ** ** *** Entropy 1.3 ***** ** *** (23.7 bits) 1.1 ************* 0.8 ************* 0.5 ************* 0.3 ************* 0.0 ------------- Multilevel CATTTCCTGCATT consensus T T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTCCTKCWTT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------- chr2:45650825-45651325 + 86 7.17e-09 GTCTTTTGCG CATTTCCTGCATT AG chr12:62603128-62603628 + 8 7.17e-09 TGCCGCC CATTTCCTGCTTT CGAGCGGCTG chr12:58920139-58920639 + 30 8.57e-09 gctGCCCGGT CAATTCCTTCTTT TACTCCCGGC chr1:234599723-234600223 + 9 2.80e-08 AGCCAGAC CTTTTACTTTATT TGGTTCACCA chr1:236395217-236395717 - 6 4.91e-08 TCCACGAGCT CACTTCCTGCTTT GGCAA chr1:15835747-15836247 - 11 5.53e-08 AGGGGGAATT CTTTCCCTTCATT GTCAGAGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTCCTKCWTT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:45650825-45651325 7.2e-09 85_[+7]_2 chr12:62603128-62603628 7.2e-09 7_[+7]_80 chr12:58920139-58920639 8.6e-09 29_[+7]_58 chr1:234599723-234600223 2.8e-08 8_[+7]_79 chr1:236395217-236395717 4.9e-08 5_[-7]_82 chr1:15835747-15836247 5.5e-08 10_[-7]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTCCTKCWTT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWTTTCCTKCWTT width=13 seqs=6 chr2:45650825-45651325 ( 86) CATTTCCTGCATT 1 chr12:62603128-62603628 ( 8) CATTTCCTGCTTT 1 chr12:58920139-58920639 ( 30) CAATTCCTTCTTT 1 chr1:234599723-234600223 ( 9) CTTTTACTTTATT 1 chr1:236395217-236395717 ( 6) CACTTCCTGCTTT 1 chr1:15835747-15836247 ( 11) CTTTCCCTTCATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTCCTKCWTT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 52800 bayes= 13.5506 E= 1.1e+004 -923 153 -923 -923 211 -923 -923 111 11 -105 -923 211 -923 -923 -923 270 -923 -105 -923 243 11 127 -923 -923 -923 153 -923 -923 -923 -923 -923 270 -923 -923 53 170 -923 127 -923 11 170 -923 -923 170 -923 -923 -923 270 -923 -923 -923 270 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTCCTKCWTT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 6 E= 1.1e+004 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.166667 0.166667 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.833333 0.000000 0.166667 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTCCTKCWTT MEME-7 regular expression -------------------------------------------------------------------------------- C[AT]TTTCCT[GT]C[AT]TT -------------------------------------------------------------------------------- Time 2043.66 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 width = 33 sites = 2 llr = 89 E-value = 1.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 Description -------------------------------------------------------------------------------- Simplified A aa::::::::::::::::a::a:::a:::a::a pos.-specific C ::::::::::::::::::::a::aa::a::a:: probability G ::aa:aa:aa::aa:aaa:a::a:::a:a::a: matrix T ::::a::a::aa::a:::::::::::::::::: bits 2.7 ** * * ** * * * * * * 2.4 ** * * ** * * * * * * 2.2 ** * * ** * * * * * * 1.9 ** * * ** * * * * * * Relative 1.6 ********************************* Entropy 1.3 ********************************* (64.5 bits) 1.1 ********************************* 0.8 ********************************* 0.5 ********************************* 0.3 ********************************* 0.0 --------------------------------- Multilevel AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------------- chr1:155688305-155688805 - 3 3.72e-20 AGGACGGCCG AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA GC chr1:155562388-155562888 - 40 3.72e-20 GGGGCGGCCG AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA GCCCGTAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:155688305-155688805 3.7e-20 2_[-8]_65 chr1:155562388-155562888 3.7e-20 39_[-8]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA width=33 seqs=2 chr1:155688305-155688805 ( 3) AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA 1 chr1:155562388-155562888 ( 40) AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 33 n= 40800 bayes= 7.62812 E= 1.8e+005 269 -765 -765 -765 269 -765 -765 -765 -765 -765 153 -765 -765 -765 153 -765 -765 -765 -765 269 -765 -765 153 -765 -765 -765 153 -765 -765 -765 -765 269 -765 -765 153 -765 -765 -765 153 -765 -765 -765 -765 269 -765 -765 -765 269 -765 -765 153 -765 -765 -765 153 -765 -765 -765 -765 269 -765 -765 153 -765 -765 -765 153 -765 -765 -765 153 -765 269 -765 -765 -765 -765 -765 153 -765 -765 153 -765 -765 269 -765 -765 -765 -765 -765 153 -765 -765 153 -765 -765 -765 153 -765 -765 269 -765 -765 -765 -765 -765 153 -765 -765 153 -765 -765 -765 -765 153 -765 269 -765 -765 -765 -765 153 -765 -765 -765 -765 153 -765 269 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 33 nsites= 2 E= 1.8e+005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA MEME-8 regular expression -------------------------------------------------------------------------------- AAGGTGGTGGTTGGTGGGAGCAGCCAGCGACGA -------------------------------------------------------------------------------- Time 2306.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TGYRTSTGTGTG MEME-9 width = 12 sites = 15 llr = 185 E-value = 3.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGYRTSTGTGTG MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::3::11:::: pos.-specific C 2:3:232::::1 probability G 1a:6:7:9:a:9 matrix T 7:718:7:a:a: bits 2.7 * * 2.4 * * 2.2 * * 1.9 * * Relative 1.6 * * *** Entropy 1.3 *** * * *** (17.8 bits) 1.1 *** * ****** 0.8 ***** ****** 0.5 ************ 0.3 ************ 0.0 ------------ Multilevel TGTGTGTGTGTG consensus C CACCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYRTSTGTGTG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr8:28401271-28401771 + 4 1.02e-08 gtg tgtatgtgtgtg acgcgtgtgt chr4:173369650-173370150 - 53 7.07e-08 CGCGCCTGCT TGTATGTATGTG TTCGCGGGCG chr10:101830545-10183104 - 62 1.04e-07 GCCCTACCCC TGCATGTGTGTG GAGGGCGTGC chr6:96924553-96925053 - 89 1.14e-07 . TGTTTGTGTGTG CGAAAGTGTG chr3:48087482-48087982 - 48 1.65e-07 TGTGTGCGCG TGCGTGTGTGTG CGCGTGCGTG chr2:11483011-11483511 + 38 4.69e-07 cgtgtatggg tgtgcgtgtgtg cacgtgtgtg chr6:36680063-36680563 + 78 6.70e-07 tgtgtgtgtg tgtgtctgtgtC AGAGACGGCA chr18:6729193-6729693 - 6 8.52e-07 CGCCTGTGTT TGTGCCTGTGTG TGCGC chr8:23714502-23715002 + 41 1.69e-06 CTAGCGGCtg tgcgtgcgtgtg tgtgtgcgtg chr10:31928002-31928502 - 41 2.09e-06 CGGGTGTGTG CGTGTCTATGTG CAAAAGGCGG chr15:74906373-74906873 - 5 2.34e-06 CAAGCCAAGC TGCGTGAGTGTG GCCC chr16:30698100-30698600 + 4 2.81e-06 GTC CGCATCTGTGTG CTGCGCGAAG chr19:3785609-3786109 - 75 3.17e-06 CGTGGAGGGC TGTGCGCGTGTG GCCGAAAAGC chr9:137086733-137087233 + 29 4.45e-06 CGCGCAGTCG CGTATCCGTGTG ATGGGCGGGC chr21:33324649-33325149 + 43 5.50e-06 GCGGAGGGGC GGTGTGTGTGTC AGAAGAGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYRTSTGTGTG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:28401271-28401771 1e-08 3_[+9]_85 chr4:173369650-173370150 7.1e-08 52_[-9]_36 chr10:101830545-10183104 1e-07 61_[-9]_27 chr6:96924553-96925053 1.1e-07 88_[-9] chr3:48087482-48087982 1.7e-07 47_[-9]_41 chr2:11483011-11483511 4.7e-07 37_[+9]_51 chr6:36680063-36680563 6.7e-07 77_[+9]_11 chr18:6729193-6729693 8.5e-07 5_[-9]_83 chr8:23714502-23715002 1.7e-06 40_[+9]_48 chr10:31928002-31928502 2.1e-06 40_[-9]_48 chr15:74906373-74906873 2.3e-06 4_[-9]_84 chr16:30698100-30698600 2.8e-06 3_[+9]_85 chr19:3785609-3786109 3.2e-06 74_[-9]_14 chr9:137086733-137087233 4.4e-06 28_[+9]_60 chr21:33324649-33325149 5.5e-06 42_[+9]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYRTSTGTGTG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGYRTSTGTGTG width=12 seqs=15 chr8:28401271-28401771 ( 4) TGTATGTGTGTG 1 chr4:173369650-173370150 ( 53) TGTATGTATGTG 1 chr10:101830545-10183104 ( 62) TGCATGTGTGTG 1 chr6:96924553-96925053 ( 89) TGTTTGTGTGTG 1 chr3:48087482-48087982 ( 48) TGCGTGTGTGTG 1 chr2:11483011-11483511 ( 38) TGTGCGTGTGTG 1 chr6:36680063-36680563 ( 78) TGTGTCTGTGTC 1 chr18:6729193-6729693 ( 6) TGTGCCTGTGTG 1 chr8:23714502-23715002 ( 41) TGCGTGCGTGTG 1 chr10:31928002-31928502 ( 41) CGTGTCTATGTG 1 chr15:74906373-74906873 ( 5) TGCGTGAGTGTG 1 chr16:30698100-30698600 ( 4) CGCATCTGTGTG 1 chr19:3785609-3786109 ( 75) TGTGCGCGTGTG 1 chr9:137086733-137087233 ( 29) CGTATCCGTGTG 1 chr21:33324649-33325149 ( 43) GGTGTGTGTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYRTSTGTGTG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 13.0721 E= 3.7e+005 -1055 -79 -237 225 -1055 -1055 153 -1055 -1055 -5 -1055 211 111 -1055 79 -121 -1055 -79 -1055 237 -1055 -5 95 -1055 -121 -79 -1055 225 -21 -1055 132 -1055 -1055 -1055 -1055 270 -1055 -1055 153 -1055 -1055 -1055 -1055 270 -1055 -137 132 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYRTSTGTGTG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 15 E= 3.7e+005 0.000000 0.200000 0.066667 0.733333 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.333333 0.000000 0.600000 0.066667 0.000000 0.200000 0.000000 0.800000 0.000000 0.333333 0.666667 0.000000 0.066667 0.200000 0.000000 0.733333 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.133333 0.866667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYRTSTGTGTG MEME-9 regular expression -------------------------------------------------------------------------------- [TC]G[TC][GA][TC][GC][TC]GTGTG -------------------------------------------------------------------------------- Time 2566.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGBGGWRGCAGTMGCHGCMG MEME-10 width = 22 sites = 10 llr = 175 E-value = 2.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGBGGWRGCAGTMGCHGCMG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 22::11:343:a1:6::4:262 pos.-specific C :8::3::11:9:::3192:831 probability G 8:aa297:571:93:9::a:17 matrix T ::::4:36:::::71:14:::: bits 2.7 * 2.4 * 2.2 * 1.9 * Relative 1.6 ** * * Entropy 1.3 ** * * * * (25.3 bits) 1.1 **** *** ******** ** 0.8 **** *** ************ 0.5 **** ***************** 0.3 ********************** 0.0 ---------------------- Multilevel GCGGTGGTGGCAGTAGCAGCAG consensus AA C TAAA GC T ACA sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGBGGWRGCAGTMGCHGCMG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr15:80989474-80989974 + 33 2.23e-13 CAGGACCCAG GCGGTGGTagcagtagcagcag cagcagcagG chr9:124940897-124941397 - 70 8.28e-10 CGCCGCTCA GAGGTGGTAACAGTAGCCGCCA AGGCCGCGCA chr16:30698100-30698600 + 39 1.19e-09 CAGTGGAGGC AAGGCGGTGGCAGTAGCCGCAG TCTCCAGGGG chr1:220046262-220046762 - 58 5.63e-09 CGCGGCGTGC GCGGTGTCGGCAGTAGCTGCGG CGCAGGGGCG chr15:72117700-72118200 - 76 5.63e-09 GCG GCGGCGGAGGCAGTAGTTGCAC CGGCAGAGGC chr6:154510123-154510623 - 3 7.95e-09 CCCGGCGGCG GCGGGGGAAGGAGGAGCTGCAG CT chr16:3400833-3401333 + 55 9.43e-09 ATGCACTGCG ACGGTATTGACAGGCGCAGCAA CCAATAGACG chr1:179882713-179883213 + 74 1.29e-08 GGTGAGGACC GCGGAGGTAACAGTCCCAGCCG CGAGC chr21:37073624-37074124 - 52 2.50e-08 AAGGCTCTAG GCGGGGGTCGCAATTGCAGAAG GCGCGGCCAC chr6:135497506-135498006 - 66 3.06e-08 CATGGGAACG GCGGCGTAGGCAGGCGCTGACG TCAGCAGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGBGGWRGCAGTMGCHGCMG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:80989474-80989974 2.2e-13 32_[+10]_46 chr9:124940897-124941397 8.3e-10 69_[-10]_9 chr16:30698100-30698600 1.2e-09 38_[+10]_40 chr1:220046262-220046762 5.6e-09 57_[-10]_21 chr15:72117700-72118200 5.6e-09 75_[-10]_3 chr6:154510123-154510623 8e-09 2_[-10]_76 chr16:3400833-3401333 9.4e-09 54_[+10]_24 chr1:179882713-179883213 1.3e-08 73_[+10]_5 chr21:37073624-37074124 2.5e-08 51_[-10]_27 chr6:135497506-135498006 3.1e-08 65_[-10]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGBGGWRGCAGTMGCHGCMG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGBGGWRGCAGTMGCHGCMG width=22 seqs=10 chr15:80989474-80989974 ( 33) GCGGTGGTAGCAGTAGCAGCAG 1 chr9:124940897-124941397 ( 70) GAGGTGGTAACAGTAGCCGCCA 1 chr16:30698100-30698600 ( 39) AAGGCGGTGGCAGTAGCCGCAG 1 chr1:220046262-220046762 ( 58) GCGGTGTCGGCAGTAGCTGCGG 1 chr15:72117700-72118200 ( 76) GCGGCGGAGGCAGTAGTTGCAC 1 chr6:154510123-154510623 ( 3) GCGGGGGAAGGAGGAGCTGCAG 1 chr16:3400833-3401333 ( 55) ACGGTATTGACAGGCGCAGCAA 1 chr1:179882713-179883213 ( 74) GCGGAGGTAACAGTCCCAGCCG 1 chr21:37073624-37074124 ( 52) GCGGGGGTCGCAATTGCAGAAG 1 chr6:135497506-135498006 ( 66) GCGGCGTAGGCAGGCGCTGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGBGGWRGCAGTMGCHGCMG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.462 E= 2.2e+005 37 -997 121 -997 37 121 -997 -997 -997 -997 153 -997 -997 -997 153 -997 -62 -20 -79 137 -62 -997 138 -997 -997 -997 102 96 96 -179 -997 196 137 -179 53 -997 96 -997 102 -997 -997 138 -179 -997 270 -997 -997 -997 -62 -997 138 -997 -997 -997 -20 218 196 -20 -997 -62 -997 -179 138 -997 -997 138 -997 -62 137 -79 -997 137 -997 -997 153 -997 37 121 -997 -997 196 -20 -179 -997 37 -179 102 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGBGGWRGCAGTMGCHGCMG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 10 E= 2.2e+005 0.200000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.300000 0.200000 0.400000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 0.700000 0.300000 0.300000 0.100000 0.000000 0.600000 0.400000 0.100000 0.500000 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.900000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 0.300000 0.700000 0.600000 0.300000 0.000000 0.100000 0.000000 0.100000 0.900000 0.000000 0.000000 0.900000 0.000000 0.100000 0.400000 0.200000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.600000 0.300000 0.100000 0.000000 0.200000 0.100000 0.700000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGBGGWRGCAGTMGCHGCMG MEME-10 regular expression -------------------------------------------------------------------------------- [GA][CA]GG[TCG]G[GT][TA][GA][GA]CAG[TG][AC]GC[ATC]G[CA][AC][GA] -------------------------------------------------------------------------------- Time 2825.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:62603128-62603628 4.17e-03 7_[+7(7.17e-09)]_80 chr6:36442932-36443432 8.59e-02 100 chr9:85940954-85941454 2.14e-02 28_[+3(1.26e-06)]_50 chr4:6640313-6640813 2.35e-05 1_[+1(7.69e-08)]_38_[-2(2.17e-05)]_\ 14 chr12:120116809-12011730 3.76e-01 100 chr10:102461062-10246156 3.85e-01 100 chr8:11564446-11564946 6.61e-01 100 chr10:86399999-86400499 3.53e-02 51_[+2(1.09e-05)]_33 chr12:132956023-13295652 5.21e-01 100 chr12:117190157-11719065 1.63e-01 77_[-10(7.20e-05)]_1 chr11:116835826-11683632 5.73e-04 38_[-1(2.41e-05)]_31 chr14:35826384-35826884 2.25e-01 100 chr4:102827041-102827541 9.66e-02 4_[-4(6.28e-06)]_74 chr1:237042479-237042979 2.41e-06 30_[+1(3.28e-07)]_17_[-2(1.23e-05)]_\ 6 chr22:31496260-31496760 4.33e-01 100 chr5:60843802-60844302 9.70e-03 70_[-3(4.09e-05)]_8 chr5:72816496-72816996 1.45e-02 31_[+1(3.56e-05)]_38 chr1:181022522-181023022 1.30e-03 74_[+2(6.80e-06)]_10 chr1:153678642-153679142 2.35e-01 100 chr18:50281381-50281881 5.05e-01 100 chr13:75480685-75481185 9.79e-11 [+2(9.55e-09)]_84 chr16:75148358-75148858 1.31e-01 5_[-4(1.10e-05)]_73 chr6:139291841-139292341 2.45e-16 13_[-9(1.02e-08)]_11_[-1(9.81e-16)]_\ 33 chr8:406788-407288 5.12e-01 100 chr8:89984302-89984802 4.73e-01 100 chr3:192409279-192409779 4.21e-01 100 chr2:96321583-96322083 1.63e-01 16_[+2(7.67e-06)]_68 chr1:31065708-31066208 8.67e-01 100 chr3:142596179-142596679 6.49e-01 100 chr7:30594615-30595115 4.00e-02 60_[-3(1.52e-06)]_18 chr12:122225782-12222628 5.18e-02 100 chr1:244918690-244919190 1.90e-02 14_[+2(4.31e-05)]_70 chr6:142301700-142302200 7.07e-01 100 chr10:25016619-25017119 5.62e-02 63_[-10(8.97e-05)]_15 chr12:95548182-95548682 8.68e-02 24_[-4(2.23e-06)]_54 chr16:22206192-22206692 5.16e-01 100 chr12:111841775-11184227 7.75e-01 100 chr6:43181871-43182371 2.32e-01 100 chr12:63668467-63668967 1.82e-02 2_[-1(1.34e-05)]_67 chr1:108963077-108963577 6.28e-01 100 chr5:132556726-132557226 7.29e-03 23_[-2(9.32e-05)]_61 chr16:84116713-84117213 6.97e-02 30_[+8(9.70e-05)]_37 chr1:235504678-235505178 2.15e-01 100 chr12:56266771-56267271 4.88e-01 100 chr15:78077058-78077558 4.15e-02 60_[+1(2.78e-06)]_9 chr14:90060420-90060920 1.32e-01 68_[+4(5.73e-05)]_10 chr20:51562414-51562914 1.57e-01 100 chr12:64404504-64405004 4.27e-01 100 chr8:30911862-30912362 8.56e-02 100 chr6:53359332-53359832 1.20e-03 10_[-4(8.34e-06)]_44_[-4(3.20e-05)]_\ 2 chr19:55407852-55408352 1.37e-01 58_[-1(7.75e-05)]_11 chr19:37906428-37906928 4.22e-02 36_[-2(6.68e-05)]_23_[+2(1.56e-05)]_\ 9 chr5:76403038-76403538 1.77e-01 100 chr12:49130654-49131154 2.04e-02 100 chr16:5033468-5033968 1.85e-05 9_[-2(1.13e-06)]_75 chr19:45768024-45768524 4.18e-01 100 chr6:1311611-1312111 9.83e-10 [-1(2.05e-11)]_24_[+3(3.71e-05)]_23 chr12:46268778-46269278 5.61e-03 5_[-4(5.70e-06)]_73 chr15:80989474-80989974 2.52e-08 32_[+10(2.23e-13)]_46 chr1:99849895-99850395 1.05e-01 100 chr8:9002689-9003189 1.32e-01 100 chr1:180502194-180502694 3.25e-02 27_[-3(3.36e-05)]_51 chr16:22190105-22190605 1.08e-01 100 chr10:72215760-72216260 7.54e-03 38_[+2(2.57e-06)]_46 chr20:25248044-25248544 5.35e-01 100 chr1:52365866-52366366 5.15e-01 100 chr12:133130235-13313073 8.87e-05 73_[-2(2.99e-07)]_11 chr5:217957-218457 7.43e-01 100 chr13:46387090-46387590 7.01e-01 100 chr3:157437777-157438277 1.97e-22 38_[+4(7.66e-07)]_1_[-1(1.22e-20)]_\ 8 chr5:55534315-55534815 2.42e-01 100 chr4:15001968-15002468 4.48e-02 8_[-2(4.31e-05)]_76 chr16:30417789-30418289 2.47e-02 2_[+2(4.31e-05)]_82 chr1:92030007-92030507 6.64e-01 100 chr22:29882944-29883444 1.70e-04 64_[+3(1.66e-06)]_14 chr20:4014869-4015369 4.58e-01 100 chr22:41022403-41022903 2.93e-01 100 chr7:27662672-27663172 6.66e-07 20_[+2(3.52e-06)]_31_[+4(1.02e-07)]_\ 11 chr10:91923633-91924133 6.79e-04 16_[-3(1.06e-05)]_20_[+4(4.68e-06)]_\ 20 chr1:52552657-52553157 8.37e-01 100 chr12:58920139-58920639 7.36e-04 29_[+7(8.57e-09)]_58 chr5:10353306-10353806 4.39e-01 100 chr13:113584178-11358467 7.84e-06 28_[-1(1.09e-10)]_22_[+2(3.24e-05)]_\ 3 chr12:49060517-49061017 8.44e-05 25_[+3(1.22e-08)]_53 chr17:19648428-19648928 2.73e-01 100 chr5:149731872-149732372 3.61e-01 100 chr4:86892031-86892531 6.98e-01 86_[-7(7.49e-05)]_1 chr2:96265832-96266332 2.46e-05 51_[+5(2.47e-11)]_22 chrX:153928155-153928655 5.89e-01 100 chr16:3400833-3401333 2.47e-07 27_[-5(5.22e-08)]_[+10(9.43e-09)]_\ 24 chr1:92485563-92486063 3.37e-01 100 chr19:38647225-38647725 1.13e-01 12_[+2(1.95e-05)]_72 chr1:147172194-147172694 9.07e-01 100 chr1:113390312-113390812 7.40e-01 100 chr1:225653507-225654007 4.90e-01 100 chr10:931542-932042 2.32e-01 21_[+2(7.27e-05)]_63 chr1:111989984-111990484 7.19e-22 15_[+1(6.95e-17)]_22_[+3(8.09e-06)]_\ 10 chr7:116671801-116672301 7.93e-03 40_[+4(1.78e-06)]_38 chr17:75182670-75183170 1.70e-05 52_[+3(2.61e-07)]_1_[+4(2.74e-05)]_\ 3 chr7:87933896-87934396 2.44e-02 2_[-4(9.85e-07)]_76 chr12:64824376-64824876 1.12e-06 18_[-4(3.03e-08)]_60 chr17:41864592-41865092 4.38e-03 16_[-3(1.98e-06)]_62 chr1:200669429-200669929 2.47e-01 23_[+3(4.52e-06)]_55 chr19:38402978-38403478 1.19e-01 100 chr15:79896596-79897096 2.50e-01 42_[-3(4.93e-05)]_36 chr22:24555617-24556117 2.64e-03 71_[+3(5.63e-08)]_7 chr12:32106592-32107092 7.58e-01 100 chr5:124735117-124735617 1.03e-01 42_[-8(4.77e-05)]_25 chr10:117543493-11754399 7.77e-02 100 chr17:78254321-78254821 3.93e-05 44_[+5(1.83e-12)]_29 chr6:152301963-152302463 1.56e-01 100 chr3:128153406-128153906 2.77e-02 100 chr13:78603443-78603943 9.01e-05 72_[-2(5.29e-06)]_12 chr6:138987934-138988434 3.37e-02 48_[-10(4.77e-06)]_30 chr22:20319815-20320315 3.43e-01 100 chr2:148644407-148644907 5.19e-07 36_[+3(6.47e-08)]_1_[+4(5.99e-09)]_\ 19 chr19:5903605-5904105 1.69e-01 70_[+2(8.58e-05)]_14 chr5:41870066-41870566 2.30e-01 100 chr6:3118507-3119007 2.50e-01 100 chr11:76380961-76381461 3.99e-05 7_[-3(9.69e-08)]_71 chr6:154510123-154510623 1.23e-03 2_[-10(7.95e-09)]_76 chr5:138575631-138576131 2.52e-02 53_[+2(2.66e-05)]_31 chr7:76393215-76393715 2.21e-01 44_[+10(1.47e-05)]_34 chr20:50191683-50192183 8.53e-01 100 chr9:137129508-137130008 5.26e-03 36_[+2(7.92e-07)]_48 chr10:128150038-12815053 3.15e-01 6_[-4(5.70e-06)]_72 chr1:45339830-45340330 9.28e-01 100 chr19:39507176-39507676 6.16e-02 75_[+10(7.41e-05)]_3 chr15:75023386-75023886 7.30e-02 100 chr15:96356901-96357401 5.43e-01 100 chr20:57351196-57351696 9.04e-01 100 chr2:135741497-135741997 8.20e-04 50_[-4(1.00e-05)]_11_[-2(1.75e-05)]_\ 1 chr3:134795161-134795661 5.20e-15 13_[+2(1.50e-08)]_12_[-1(7.86e-14)]_\ 28 chr19:46860358-46860858 5.27e-05 7_[+2(6.80e-06)]_77 chr6:39114811-39115311 9.62e-01 100 chr5:132490375-132490875 4.52e-04 58_[+3(9.69e-08)]_20 chr12:122021733-12202223 1.31e-20 1_[+1(3.69e-19)]_5_[+1(7.69e-08)]_\ 12_[+9(4.17e-05)]_8 chr18:33577839-33578339 8.00e-04 51_[+8(4.48e-05)]_16 chr12:89351502-89352002 6.27e-01 100 chr8:17922834-17923334 1.08e-01 100 chr3:168249675-168250175 8.35e-01 100 chr16:1772783-1773283 6.50e-01 100 chr7:44796254-44796754 2.52e-03 11_[+4(2.53e-05)]_18_[+2(3.24e-05)]_\ 33 chr3:9932928-9933428 6.41e-01 100 chr16:67183738-67184238 5.17e-02 21_[-1(3.72e-05)]_48 chr20:64038677-64039177 2.40e-01 100 chr12:98644814-98645314 2.24e-01 100 chr9:129626117-129626617 5.70e-01 100 chr6:118894615-118895115 1.41e-01 100 chr17:47649622-47650122 1.18e-03 71_[-3(5.67e-07)]_7 chr1:26500362-26500862 9.76e-01 100 chr8:94719716-94720216 1.82e-03 73_[+3(1.14e-06)]_5 chr17:1516448-1516948 1.00e-01 100 chr10:102419478-10241997 5.35e-05 62_[+3(1.52e-06)]_16 chr6:119349435-119349935 3.65e-02 100 chr1:21782600-21783100 4.58e-01 100 chr2:45650825-45651325 2.86e-22 18_[-2(2.99e-07)]_1_[-1(9.74e-18)]_\ 2_[+7(5.18e-05)]_4_[+7(7.17e-09)]_2 chr6:34392580-34393080 1.74e-02 71_[+3(3.53e-05)]_7 chr1:63523058-63523558 2.67e-02 40_[-2(9.32e-05)]_44 chr3:14178261-14178761 8.11e-02 1_[-3(4.52e-06)]_77 chr14:31207807-31208307 2.46e-02 1_[+2(2.94e-05)]_83 chr5:66144293-66144793 4.06e-01 100 chr11:20387371-20387871 2.15e-02 72_[-4(1.78e-06)]_6 chr12:50057195-50057695 3.62e-02 76_[+4(1.10e-05)]_2 chr12:121352151-12135265 3.05e-02 100 chr19:5719930-5720430 2.61e-01 8_[-8(9.70e-05)]_59 chr16:2215025-2215525 3.31e-01 100 chr1:201435671-201436171 2.94e-23 14_[+9(1.04e-07)]_4_[+9(7.01e-05)]_\ 2_[+1(1.22e-20)]_3_[+3(4.09e-05)] chr17:82450427-82450927 2.56e-01 100 chr17:78840852-78841352 9.39e-01 100 chr20:47501848-47502348 4.00e-03 5_[+3(4.88e-06)]_73 chr3:17742469-17742969 6.23e-02 11_[-4(1.83e-05)]_67 chr5:140175269-140175769 9.58e-01 100 chr19:58305229-58305729 2.42e-01 100 chr8:23714502-23715002 2.84e-16 40_[+9(1.69e-06)]_[+1(4.60e-16)]_1_\ [-2(2.99e-07)] chr4:140154061-140154561 6.96e-02 100 chr21:33229970-33230470 6.64e-01 100 chr17:39754237-39754737 8.66e-03 58_[-3(4.18e-06)]_20 chr12:22335138-22335638 8.53e-24 [-1(1.22e-20)]_[+2(1.13e-06)]_2_\ [+4(4.52e-07)]_29 chr2:86195184-86195684 3.15e-07 63_[+1(1.48e-08)]_6 chr22:37807745-37808245 9.59e-01 100 chr2:96208557-96209057 1.54e-03 76_[+2(4.31e-05)]_8 chr19:35545298-35545798 9.83e-01 100 chr1:116909855-116910355 1.72e-03 77_[+3(1.82e-07)]_1 chr3:48240924-48241424 2.79e-04 26_[-2(3.58e-07)]_58 chr10:31928002-31928502 1.24e-09 13_[+2(2.08e-08)]_11_[-9(2.09e-06)]_\ 16_[-1(5.68e-10)]_1 chr8:27310793-27311293 4.51e-01 100 chr12:133037200-13303770 1.81e-01 55_[-2(7.67e-06)]_29 chr7:30135738-30136238 1.17e-11 31_[-1(2.78e-12)]_4_[+2(3.58e-07)]_\ 18 chr5:149730861-149731361 3.66e-03 78_[+3(1.26e-07)] chr19:2165021-2165521 1.76e-01 100 chr19:50384131-50384631 1.10e-02 60_[+3(4.49e-05)]_18 chr5:73215989-73216489 2.96e-02 68_[+4(1.99e-05)]_10 chr12:28190401-28190901 1.98e-02 12_[+4(5.70e-06)]_66 chr22:31399162-31399662 3.42e-01 78_[-3(4.93e-05)] chr22:32474665-32475165 2.10e-01 100 chr6:6007308-6007808 9.86e-20 59_[-1(1.22e-20)]_10 chr14:104752839-10475333 1.31e-02 36_[-4(1.55e-05)]_42 chr16:29973537-29974037 5.65e-02 70_[-3(8.84e-05)]_8 chr6:89081563-89082063 5.47e-02 68_[+4(1.10e-05)]_10 chr3:31980555-31981055 4.48e-17 50_[-9(1.02e-08)]_3_[-1(8.17e-17)]_\ 4 chr9:124940897-124941397 5.02e-07 45_[-2(2.66e-05)]_8_[-10(8.28e-10)]_\ 9 chr1:1511798-1512298 4.02e-01 100 chr10:110008106-11000860 5.39e-01 100 chr6:87408222-87408722 5.31e-02 26_[+2(4.09e-06)]_13_[-9(7.36e-05)]_\ 7_[-9(7.36e-05)]_14 chrX:14029683-14030183 9.82e-01 100 chr4:173369650-173370150 2.58e-11 5_[-1(7.70e-12)]_16_[-9(7.07e-08)]_\ 36 chr1:36088752-36089252 2.44e-02 1_[-4(2.97e-07)]_77 chr5:132369672-132370172 6.84e-02 29_[+2(7.67e-06)]_55 chr10:32958256-32958756 6.37e-03 8_[+4(9.77e-05)]_70 chr1:229342644-229343144 7.41e-01 100 chr18:26226283-26226783 9.88e-01 100 chr7:139340196-139340696 4.51e-03 74_[-2(1.09e-05)]_10 chr6:100881114-100881614 3.62e-01 100 chr5:98928799-98929299 4.51e-02 9_[+2(4.31e-05)]_75 chr1:179882713-179883213 6.38e-04 73_[+10(1.29e-08)]_5 chr5:65925716-65926216 1.62e-01 100 chr1:154220567-154221067 1.52e-03 23_[-2(3.24e-05)]_39_[+4(1.31e-05)] chr1:52842790-52843290 7.09e-01 100 chr15:72117700-72118200 2.41e-03 75_[-10(5.63e-09)]_3 chr11:57667620-57668120 8.42e-02 100 chr17:50866051-50866551 2.07e-01 100 chr8:37899002-37899502 5.88e-02 42_[-9(3.32e-05)]_46 chr6:83065624-83066124 4.83e-01 100 chr10:99620706-99621206 3.19e-01 100 chr12:56448945-56449445 5.59e-02 16_[-2(9.71e-06)]_68 chr8:123396282-123396782 6.26e-01 100 chr1:156660165-156660665 2.71e-15 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chr16:28823904-28824404 1.83e-02 41_[-2(7.27e-05)]_43 chr12:112013315-11201381 4.59e-02 100 chr20:2651993-2652493 7.77e-01 100 chr15:92714532-92715032 4.87e-01 100 chr10:6145056-6145556 4.45e-01 100 chr17:79183433-79183933 1.03e-11 58_[+1(1.33e-12)]_11 chr19:39320205-39320705 1.73e-08 17_[+2(4.71e-05)]_33_[-1(1.40e-09)]_\ 3 chr1:231422355-231422855 9.48e-03 12_[+4(6.91e-06)]_66 chr1:223846010-223846510 1.48e-02 54_[-3(3.29e-06)]_24 chr1:228165840-228166340 4.56e-01 100 chr17:43983637-43984137 3.02e-01 100 chr8:23528872-23529372 1.30e-01 57_[-3(5.63e-05)]_21 chr1:50977634-50978134 9.73e-01 100 chr19:38849260-38849760 7.86e-04 15_[-3(1.28e-05)]_9_[+2(7.27e-05)]_\ 38 chr6:144284880-144285380 4.99e-01 100 chr1:15835747-15836247 1.80e-02 10_[-7(5.53e-08)]_77 chr1:234599723-234600223 1.41e-07 8_[+7(2.80e-08)]_44_[-1(1.89e-07)]_\ 4 chr7:44123257-44123757 1.02e-01 100 chr19:38264469-38264969 9.43e-01 100 chr15:74906373-74906873 3.42e-04 4_[-9(2.34e-06)]_84 chr12:55830579-55831079 5.33e-14 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48_[+3(6.47e-08)]_1_[+2(1.56e-05)]_\ 13 chr1:36224110-36224610 1.23e-05 51_[-5(5.66e-11)]_22 chr15:101295018-10129551 3.68e-02 9_[-5(1.75e-05)]_9_[+10(5.09e-05)]_\ 33 chr5:126777542-126778042 8.27e-01 11_[+4(7.53e-05)]_67 chr19:3785609-3786109 3.28e-02 74_[-9(3.17e-06)]_14 chr16:30957608-30958108 9.06e-01 100 chr19:40603702-40604202 1.43e-02 53_[+4(5.70e-06)]_25 chr17:15999419-15999919 8.37e-01 100 chr9:136118700-136119200 1.35e-02 49_[-10(4.26e-05)]_29 chr10:104232012-10423251 5.07e-01 100 chr1:59296405-59296905 9.15e-01 100 chr16:31180363-31180863 9.90e-02 41_[+2(4.31e-05)]_43 chr4:6715904-6716404 3.32e-12 17_[+1(1.86e-10)]_52 chr5:179858596-179859096 1.44e-01 68_[+2(5.62e-05)]_16 chr11:87037532-87038032 9.44e-04 4_[-3(2.59e-05)]_74 chr6:96924553-96925053 1.39e-19 28_[+2(2.00e-07)]_5_[-1(1.22e-20)]_\ 8_[-9(1.14e-07)] chr5:139293659-139294159 5.08e-06 15_[+10(5.09e-05)]_24_\ [-4(1.91e-07)]_17 chr6:116370918-116371418 4.76e-02 21_[+4(4.68e-06)]_57 chr1:244047730-244048230 6.58e-01 100 chr19:37655829-37656329 2.65e-01 100 chr1:228406190-228406690 2.09e-01 100 chrX:41334352-41334852 9.14e-03 100 chr19:10565633-10566133 5.56e-03 29_[-1(7.16e-05)]_40 chr19:35757862-35758362 3.39e-01 100 chr10:117375405-11737590 1.42e-01 19_[-6(2.45e-05)]_34 chr19:35248696-35249196 1.18e-01 100 chr21:44801607-44802107 6.22e-01 100 chr5:139293437-139293937 1.92e-02 48_[-10(6.43e-05)]_30 chr12:6689001-6689501 1.74e-10 4_[+3(2.79e-06)]_6_[+2(3.24e-05)]_5_\ [-1(1.11e-08)]_16 chr12:49366783-49367283 3.16e-02 100 chr6:87155269-87155769 3.54e-01 100 chr19:35987000-35987500 7.54e-01 100 chr12:64222094-64222594 1.49e-03 23_[-2(7.92e-07)]_61 chr21:42893073-42893573 2.38e-02 5_[+2(7.90e-05)]_79 chr1:226407686-226408186 9.19e-01 100 chr1:29237128-29237628 3.96e-03 56_[-2(1.56e-05)]_28 chr21:38660695-38661195 5.07e-01 [-2(3.24e-05)]_84 chr15:65422334-65422834 4.11e-12 1_[-1(3.42e-12)]_10_[+2(4.31e-05)]_\ 42 chr21:37073624-37074124 5.29e-04 51_[-10(2.50e-08)]_27 chr22:19854708-19855208 6.28e-01 100 chr10:104121697-10412219 5.18e-01 100 chr17:58007051-58007551 3.28e-05 19_[+3(2.06e-07)]_28_[+2(7.27e-05)]_\ 15 chr17:4710348-4710848 1.90e-08 37_[+3(3.66e-08)]_11_[-2(1.56e-05)]_\ 14 chr5:87267434-87267934 4.36e-03 76_[-4(6.14e-05)]_2 chr3:194134796-194135296 4.71e-16 44_[-1(5.63e-15)]_25 chr10:73772465-73772965 7.76e-02 11_[+2(1.75e-05)]_73 chr17:42567078-42567578 1.37e-02 68_[-2(2.41e-05)]_16 chr16:30011028-30011528 5.14e-05 5_[-1(5.93e-07)]_11_[-1(2.11e-08)]_\ 22 chr19:46600818-46601318 1.82e-03 84_[-2(7.67e-06)] chr10:102055888-10205638 9.45e-02 82_[+2(3.57e-05)]_2 chr10:102399379-10239987 2.20e-02 70_[+2(1.75e-05)]_14 chr17:74431755-74432255 7.30e-11 54_[+1(1.03e-08)]_15 chr1:121519204-121519704 7.02e-02 72_[+3(3.36e-05)]_6 chr1:228486834-228487334 5.25e-01 100 chr7:42911799-42912299 7.77e-02 56_[+7(5.76e-05)]_31 chr8:33484756-33485256 3.67e-03 83_[-2(7.27e-05)]_1 chr5:137754501-137755001 5.47e-02 78_[+7(5.76e-05)]_9 chr5:50440828-50441328 5.76e-02 100 chr12:56104320-56104820 1.69e-08 7_[-5(1.58e-10)]_34_[-4(4.23e-06)]_\ 10 chr1:212858067-212858567 2.00e-02 62_[+4(6.28e-06)]_16 chr15:69160463-69160963 3.83e-05 31_[-3(3.16e-08)]_47 chr7:114086013-114086513 1.36e-19 15_[-9(1.43e-06)]_7_[-1(4.08e-19)]_\ 35 chr1:228486617-228487117 4.59e-03 11_[+3(1.98e-06)]_67 chr1:155688305-155688805 5.61e-16 2_[-8(3.72e-20)]_28_[-1(1.77e-05)]_\ 6 chr13:48037629-48038129 1.50e-01 15_[+8(9.70e-05)]_52 chr1:54886755-54887255 1.18e-03 25_[+3(8.84e-05)]_53 chr15:65530459-65530959 4.19e-01 100 chr5:171387366-171387866 1.84e-03 29_[+2(2.66e-05)]_28_[-2(6.80e-06)]_\ 11 chr1:229558722-229559222 3.55e-01 100 chr3:48087482-48087982 2.74e-20 17_[+2(7.30e-08)]_2_[+2(9.55e-09)]_\ [-9(8.31e-06)]_1_[-1(1.22e-20)]_5 chr1:228457387-228457887 6.05e-01 100 chr21:39183105-39183605 1.62e-06 1_[-3(2.94e-11)]_77 chr5:134874159-134874659 9.94e-01 100 chr19:38618625-38619125 3.03e-02 26_[+2(2.66e-05)]_32_[+2(8.63e-06)]_\ 10 chr5:10307410-10307910 6.90e-01 100 chr1:236395217-236395717 2.18e-10 5_[-7(4.91e-08)]_33_[+3(5.05e-09)]_\ 27 chr22:19432150-19432650 3.29e-01 100 chr7:158704795-158705295 6.46e-02 62_[-2(3.57e-05)]_22 chr1:228103059-228103559 9.68e-01 100 chr21:28885049-28885549 1.13e-01 18_[+2(4.71e-05)]_66 chr18:49486976-49487476 1.65e-02 18_[-1(1.69e-05)]_51 chr8:38996732-38997232 4.94e-06 1_[-2(2.41e-05)]_1_[-2(8.58e-05)]_\ 31_[+3(1.10e-07)]_13 chr1:21345629-21346129 9.83e-20 55_[+1(1.22e-20)]_14 chr12:6778654-6779154 2.50e-18 26_[+2(7.30e-08)]_[-9(2.58e-05)]_1_\ [-1(6.75e-18)]_14 chr21:39313509-39314009 6.81e-01 100 chr10:88880377-88880877 1.99e-04 3_[+10(3.37e-05)]_47_[-2(7.67e-06)]_\ 12 chr16:1971820-1972320 9.76e-01 100 chr6:108260940-108261440 6.37e-01 100 chr19:5622598-5623098 1.44e-07 13_[-4(2.34e-05)]_10_[+2(7.92e-07)]_\ 39 chr18:6729193-6729693 1.44e-10 14_[-1(4.81e-11)]_13_[-1(5.14e-12)]_\ 11 chr1:244864318-244864818 8.04e-01 100 chr16:30875099-30875599 9.72e-01 100 chr21:36069859-36070359 7.33e-01 100 chr6:53651754-53652254 6.20e-01 100 chr19:40605344-40605844 2.34e-01 74_[+7(1.82e-05)]_13 chr3:173395619-173396119 1.25e-03 10_[+4(1.83e-05)]_22_[+3(2.71e-08)]_\ 24 chr19:12945552-12946052 2.24e-02 2_[+2(2.17e-05)]_13_[-7(8.41e-05)]_\ 56 chr16:30065002-30065502 3.56e-03 8_[-3(5.63e-08)]_70 chr19:36687348-36687848 2.65e-03 38_[+1(1.28e-05)]_31 chr20:36092999-36093499 4.07e-06 [+9(9.51e-05)]_6_[+1(5.23e-10)]_19_\ [+1(3.27e-05)]_1 chr5:1594284-1594784 6.32e-01 100 chr19:43754804-43755304 7.98e-02 58_[-2(2.66e-05)]_26 chr6:40587285-40587785 3.18e-20 11_[-1(3.96e-20)]_58 chr19:39402428-39402928 7.11e-02 61_[-4(3.20e-05)]_17 chr1:32650869-32651369 6.09e-01 100 chr12:6937735-6938235 5.16e-05 53_[+4(2.59e-10)]_[+4(3.44e-06)]_3 chr1:10793917-10794417 2.67e-18 24_[-2(3.52e-09)]_10_[+1(1.58e-18)]_\ 1_[-2(1.39e-05)]_2 chr21:33324649-33325149 1.58e-03 42_[+9(5.50e-06)]_46 chr2:11483011-11483511 6.31e-13 [+9(7.01e-05)]_1_[-2(1.31e-07)]_8_\ [+9(4.69e-07)]_6_[+1(6.18e-14)]_14 chr16:29805426-29805926 7.22e-06 16_[-4(1.20e-05)]_22_[-2(3.66e-08)]_\ 24 chr6:36680063-36680563 4.38e-21 17_[-2(7.92e-07)]_12_[+1(1.22e-20)]_\ 1_[+9(6.70e-07)]_11 chr16:21519959-21520459 1.68e-22 15_[+6(9.88e-29)]_12_[-4(1.11e-06)]_\ 4 chr5:140107506-140108006 3.16e-03 23_[+3(1.55e-05)]_55 chr10:101830545-10183104 1.72e-08 12_[-1(5.90e-08)]_18_[-9(1.04e-07)]_\ 27 chr4:24472641-24473141 5.16e-18 2_[+3(9.18e-05)]_29_[-2(4.09e-06)]_\ [+1(3.01e-14)] chr15:75639740-75640240 8.13e-01 100 chr8:28401271-28401771 2.76e-10 3_[+9(1.02e-08)]_5_[-2(4.64e-06)]_\ 20_[+1(2.22e-10)]_13 chr1:16644490-16644990 3.41e-04 32_[+2(2.21e-06)]_16_[-1(2.75e-05)]_\ 5 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: surya ********************************************************************************