# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB26.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018)
#        host: surya
#        when: Mon Jun 11 07:46:34 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.149 C 0.352 G 0.357 T 0.143


MOTIF GCGCGYBC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCGYBC   GVRCGCGC        275        108   1.1e-025   2.9e-021
#         GCGCGCGC   GCGCGCGC        115         34   3.9e-013   1.0e-008
#         GCGCGTGC   GCACGCGC         79         25   1.4e-008   3.6e-004
#         GCGCGCCC   GGGCGCGC         87         30   1.4e-008   3.7e-004
#         GCGCGCTC   GAGCGCGC         71         24   2.7e-007   7.0e-003
#         GCGCGTCC   GGACGCGC         29         10   1.4e-003   3.7e+001
#         GCGCGTTC   GAACGCGC         22          6   1.7e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 364 E= 2.9e-021
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.642857 0.000000 0.357143
0.000000 0.288462 0.453297 0.258242
0.000000 1.000000 0.000000 0.000000


MOTIF GGRRA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GGRRA      TYYCC        408        278   2.1e-014   5.2e-010
#            GGGGA      TCCCC        233        155   9.5e-007   2.4e-002
#            GGGAA      TTCCC        160         98   8.5e-006   2.2e-001
#            GGAAA      TTTCC         94         47   1.6e-005   4.1e-001
#            GGAGA      TCTCC        182        120   2.4e-005   6.0e-001

letter-probability matrix: alength= 4 w= 5 nsites= 678 E= 5.2e-010
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.424779 0.000000 0.575221 0.000000
0.349558 0.000000 0.650442 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF SCGGGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      SCGGGA     TCCCGS        183        101   1.6e-008   3.8e-004
#           GCGGGA     TCCCGC        129         66   5.1e-007   1.2e-002
#           CCGGGA     TCCCGG         69         39   1.6e-003   3.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 214 E= 3.8e-004
0.000000 0.345794 0.654206 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 15.24 seconds