# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB20.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB20.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB20.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB20.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:01 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB20.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:02 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:56:24 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.175 C 0.326 G 0.324 T 0.176


MOTIF CCYGGRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCYGGRA    TYCCRGG        266         58   4.6e-044   1.4e-039
#          CCCGGGA    TCCCGGG        178         28   4.2e-033   1.3e-028
#          CCTGGAA    TTCCAGG         46         11   9.8e-007   3.0e-002
#          CCCGGAA    TTCCGGG         40          8   1.1e-006   3.2e-002
#          CCTGGGA    TCCCAGG         34         11   3.3e-004   1.0e+001

letter-probability matrix: alength= 4 w= 7 nsites= 314 E= 1.4e-039
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.738854 0.000000 0.261146
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.280255 0.000000 0.719745 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCCGGGY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCCGGGY    RCCCGGG        119         40   6.6e-012   2.0e-007
#          CCCGGGC    GCCCGGG         93         31   1.9e-009   5.5e-005
#          CCCGGGT    ACCCGGG         40         15   3.9e-004   1.1e+001

letter-probability matrix: alength= 4 w= 7 nsites= 131 E= 2.0e-007
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.702290 0.000000 0.297710


MOTIF CWGCAK DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CWGCAK     MTGCWG        177         91   1.5e-009   4.4e-005
#           CTGCAT     ATGCAG         48         16   2.5e-005   7.3e-001
#           CTGCAG     CTGCAG         51         19   5.3e-005   1.6e+000
#           CAGCAT     ATGCTG         31         13   4.2e-003   1.2e+002
#           CAGCAG     CTGCTG         81         53   6.6e-003   1.9e+002

letter-probability matrix: alength= 4 w= 6 nsites= 217 E= 4.4e-005
0.000000 1.000000 0.000000 0.000000
0.525346 0.000000 0.000000 0.474654
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.631336 0.368664


MOTIF RGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       RGGAA      TTCCY        305        218   2.6e-007   7.7e-003
#            GGGAA      TTCCC        207        150   2.0e-004   5.8e+000
#            AGGAA      TTCCT        151        104   5.7e-004   1.7e+001

letter-probability matrix: alength= 4 w= 5 nsites= 418 E= 7.7e-003
0.406699 0.000000 0.593301 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATWCAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AATWCAG    CTGWATT         28          3   1.8e-006   5.0e-002
#          AATACAG    CTGTATT         20          3   2.2e-004   6.0e+000
#          AATTCAG    CTGAATT          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 29 E= 5.0e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.724138 0.000000 0.000000 0.275862
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 81.04 seconds