Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
ATGGATGGATGGATGGATGGATGG 24 ATGGATGGATGGATGGATGGATGG
TCCATCCAT 9 TCCATCCAT
TGGATGGAT 9 TGGATGGAT
YCATCCATC 9 CCATCCATC
ATGGATGGA 9 ATGGATGGA
CSCRSKGCMTKCTGGGARWTGTAGTCCW 28 CGCGGGGCATGCTGGGAATTGTAGTCCA
TCYCYYYYTCTCTCYYYCCCTC 22 TCCCTCCCTCTCTCTCTCCCTC
GRRTGGRTGKRTGDRTGKRTGG 22 GGGTGGGTGGGTGAGTGGGTGG
VGAGCGCCGAGC 12 CGAGCGCCGAGC
ATGGATRGATGG 12 ATGGATGGATGG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.230 C 0.270 G 0.270 T 0.230


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
VGAGCGCCGAGC MEME-9 chr22 - 35257401 35257412 9.37e-08 0.0183 AGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr2 - 55617725 55617736 9.37e-08 0.0183 AGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr1 + 111990076 111990087 9.37e-08 0.0183 AGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr6 + 693123 693134 2.04e-07 0.0205 CGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr19 + 15432839 15432850 2.04e-07 0.0205 CGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr1 - 32817360 32817371 3.15e-07 0.0205 GGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr20 - 46031839 46031850 3.15e-07 0.0205 GGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr17 + 75855766 75855777 3.15e-07 0.0205 GGAGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr6 + 98834601 98834612 3.15e-07 0.0205 ggagcgccgagc
VGAGCGCCGAGC MEME-9 chr6 + 43059345 43059356 3.94e-07 0.0231 AGAGCGCAGAGC
VGAGCGCCGAGC MEME-9 chr1 + 43368390 43368401 4.88e-07 0.026 CGAGCGCAGAGC
VGAGCGCCGAGC MEME-9 chr1 - 115337760 115337771 5.82e-07 0.0284 GGAGCGCAGAGC
VGAGCGCCGAGC MEME-9 chr12 + 54579937 54579948 6.61e-07 0.0298 AGAGCGCCGAGT
VGAGCGCCGAGC MEME-9 chr6 + 693155 693166 8.34e-07 0.0306 CGAGCGCCGAGT
VGAGCGCCGAGC MEME-9 chr3 + 15099203 15099214 8.34e-07 0.0306 CGAGCGCCGAGT
VGAGCGCCGAGC MEME-9 chr19 + 15432846 15432857 8.34e-07 0.0306 CGAGCGCCGAGT
VGAGCGCCGAGC MEME-9 chr9 + 133336231 133336242 1.01e-06 0.0348 CGAACGCCGAGC
VGAGCGCCGAGC MEME-9 chr16 - 27203470 27203481 1.1e-06 0.0359 GGAGCGCCGAGT
VGAGCGCCGAGC MEME-9 chr6 + 116371396 116371407 1.29e-06 0.0398 CGAGCACCGAGC
VGAGCGCCGAGC MEME-9 chr21 - 31344025 31344036 1.38e-06 0.0406 AGAGCCCCGAGC
VGAGCGCCGAGC MEME-9 chr19 + 35352622 35352633 1.56e-06 0.0415 GGAGCACCGAGC
VGAGCGCCGAGC MEME-9 chr6 - 43059411 43059422 1.56e-06 0.0415 GGAGCACCGAGC
VGAGCGCCGAGC MEME-9 chr19 + 15432832 15432843 1.76e-06 0.0448 CGAGTGCCGAGC
VGAGCGCCGAGC MEME-9 chr19 - 39970639 39970650 1.87e-06 0.0448 GGAGCCCCGAGC
VGAGCGCCGAGC MEME-9 chr12 - 22544542 22544553 2.04e-06 0.0448 AGAGCGCCGAAC
VGAGCGCCGAGC MEME-9 chr9 + 131502971 131502982 2.04e-06 0.0448 GGAGTGCCGAGC
VGAGCGCCGAGC MEME-9 chr1 + 46247660 46247671 2.14e-06 0.0448 CGAGCGCCGAAC
VGAGCGCCGAGC MEME-9 chr1 - 109090718 109090729 2.14e-06 0.0448 CGAGCGCCGAAC
VGAGCGCCGAGC MEME-9 chr7 - 103347870 103347881 2.67e-06 0.0541 AGAGCACAGAGC
VGAGCGCCGAGC MEME-9 chr15 - 101724119 101724130 2.77e-06 0.0541 AGAGCGCGGAGC
VGAGCGCCGAGC MEME-9 chr2 - 44169707 44169718 3.05e-06 0.0551 GGAGCGCAGAGT
VGAGCGCCGAGC MEME-9 chr17 - 7915634 7915645 3.14e-06 0.0551 AGAGCGCCGAGG
VGAGCGCCGAGC MEME-9 chr5 + 69167421 69167432 3.14e-06 0.0551 AGAGCGCCGAGG
VGAGCGCCGAGC MEME-9 chr20 - 16729946 16729957 3.3e-06 0.0551 CGAGCACAGAGC
VGAGCGCCGAGC MEME-9 chr10 + 75111983 75111994 3.38e-06 0.0551 agagcccagagc
VGAGCGCCGAGC MEME-9 chr15 + 75203044 75203055 3.38e-06 0.0551 AGAGCCCAGAGC
VGAGCGCCGAGC MEME-9 chr21 + 31343928 31343939 3.62e-06 0.0575 CGCGCGCCGAGC
VGAGCGCCGAGC MEME-9 chr1 + 46442778 46442789 4.07e-06 0.0592 CGAGCCCAGAGC
VGAGCGCCGAGC MEME-9 chr22 - 35257451 35257462 4.07e-06 0.0592 CGAGCCCAGAGC
VGAGCGCCGAGC MEME-9 chr19 - 36128090 36128101 4.18e-06 0.0592 GGAGCGCGGAGC
VGAGCGCCGAGC MEME-9 chr1 - 93079256 93079267 4.18e-06 0.0592 GGAGCGCGGAGC
VGAGCGCCGAGC MEME-9 chr5 + 154039053 154039064 4.57e-06 0.0592 GGAGCGCCGAGG
VGAGCGCCGAGC MEME-9 chr15 + 66851423 66851434 4.66e-06 0.0592 GGAGCCCAGAGC
VGAGCGCCGAGC MEME-9 chr12 - 45216134 45216145 4.66e-06 0.0592 GGAGCCCAGAGC
VGAGCGCCGAGC MEME-9 chr10 - 86400558 86400569 4.66e-06 0.0592 GGAGCCCAGAGC
VGAGCGCCGAGC MEME-9 chrX - 153928513 153928524 4.66e-06 0.0592 GGAGCCCAGAGC
VGAGCGCCGAGC MEME-9 chr12 - 82358469 82358480 4.74e-06 0.0592 AGAGCTCCGAGC
VGAGCGCCGAGC MEME-9 chr6 - 11093746 11093757 4.89e-06 0.0597 GGAGTGCAGAGC
VGAGCGCCGAGC MEME-9 chr2 - 61017660 61017671 5.1e-06 0.0608 AGAACACCGAGC
VGAGCGCCGAGC MEME-9 chr10 + 75403381 75403392 5.43e-06 0.0608 GGAACGCCGAGT
VGAGCGCCGAGC MEME-9 chr3 - 12664152 12664163 5.43e-06 0.0608 CGAGCACCGAGT
VGAGCGCCGAGC MEME-9 chr5 - 154038894 154038905 5.43e-06 0.0608 GGAACGCCGAGT
VGAGCGCCGAGC MEME-9 chr17 + 2101671 2101682 5.59e-06 0.0608 cgaacaccgagc
VGAGCGCCGAGC MEME-9 chr20 + 34303151 34303162 5.59e-06 0.0608 AGAGCCCCGAGT
VGAGCGCCGAGC MEME-9 chr10 + 62049334 62049345 6.46e-06 0.0689 AGAGCGCTGAGC
VGAGCGCCGAGC MEME-9 chr19 + 15432756 15432767 6.63e-06 0.0695 CGAGTGCCGAGT
VGAGCGCCGAGC MEME-9 chr10 - 7818462 7818473 6.95e-06 0.0713 CGAATGCCGAGC
VGAGCGCCGAGC MEME-9 chr1 - 151190177 151190188 7.05e-06 0.0713 CGAGCGTCGAGC
VGAGCGCCGAGC MEME-9 chr1 - 113929601 113929612 8.05e-06 0.0796 GGAATGCCGAGC
VGAGCGCCGAGC MEME-9 chr1 + 154220645 154220656 8.14e-06 0.0796 GGAGCGTCGAGC
VGAGCGCCGAGC MEME-9 chr5 - 98773154 98773165 9.19e-06 0.0884 AGAGCGCCGCGC
VGAGCGCCGAGC MEME-9 chr3 + 173398186 173398197 9.43e-06 0.0893 GGAGCGCAGAGG
VGAGCGCCGAGC MEME-9 chr15 - 63121725 63121736 9.85e-06 0.0903 CGAGCGCCGATC
VGAGCGCCGAGC MEME-9 chr1 - 171742070 171742081 9.85e-06 0.0903 CGAGCGCCGATC
VGAGCGCCGAGC MEME-9 chr5 + 58583107 58583118 1.32e-05 0.117 AGAGTGCAGAGT
VGAGCGCCGAGC MEME-9 chr19 - 42242909 42242920 1.32e-05 0.117 AGCGCACCGAGC
VGAGCGCCGAGC MEME-9 chr7 + 158856475 158856486 1.49e-05 0.129 GGCACGCCGAGC
VGAGCGCCGAGC MEME-9 chr10 + 102421164 102421175 1.51e-05 0.129 AGAGCCCGGAGC
VGAGCGCCGAGC MEME-9 chr14 - 24141967 24141978 1.53e-05 0.129 AGAGTACAGAGC
VGAGCGCCGAGC MEME-9 chr12 + 89526074 89526085 1.54e-05 0.129 CGAGCCCCGAGA
VGAGCGCCGAGC MEME-9 chr19 + 32972227 32972238 1.57e-05 0.13 CGAGCACCGAGG
VGAGCGCCGAGC MEME-9 chr3 + 190513768 190513779 1.6e-05 0.131 AGCGTGCCGAGC
VGAGCGCCGAGC MEME-9 chr1 + 44986674 44986685 1.84e-05 0.144 AGACCGCCGAGC
VGAGCGCCGAGC MEME-9 chr10 + 62049203 62049214 1.84e-05 0.144 AGAGAGCAGAGC
VGAGCGCCGAGC MEME-9 chr14 + 74572379 74572390 1.84e-05 0.144 GGAGTGCCGAGA
VGAGCGCCGAGC MEME-9 chr1 - 235505020 235505031 1.92e-05 0.148 AGAGCACAGAAC
VGAGCGCCGAGC MEME-9 chr16 + 2205490 2205501 1.97e-05 0.148 GGAGTGCGGAGC
VGAGCGCCGAGC MEME-9 chr19 + 37218056 37218067 1.97e-05 0.148 GGAGTGCGGAGC
VGAGCGCCGAGC MEME-9 chr17 + 68512086 68512097 2e-05 0.148 AGAGCGAAGAGC
VGAGCGCCGAGC MEME-9 chr11 + 46594105 46594116 2.04e-05 0.148 CGAGCGCCGAAA
VGAGCGCCGAGC MEME-9 chr15 - 75452328 75452339 2.05e-05 0.148 GGAACTCCGAGC
VGAGCGCCGAGC MEME-9 chr1 + 150010297 150010308 2.08e-05 0.149 GGAGTGCCGAGG
VGAGCGCCGAGC MEME-9 chr12 - 56104295 56104306 2.25e-05 0.159 AGAACGCTGAGC
VGAGCGCCGAGC MEME-9 chr9 + 128657091 128657102 2.28e-05 0.159 GGAGCGCAGATC
VGAGCGCCGAGC MEME-9 chr17 - 17300898 17300909 2.31e-05 0.16 AGAGCACAGAGA
VGAGCGCCGAGC MEME-9 chr17 + 48908255 48908266 2.38e-05 0.16 CGAGCCCAGAAC
VGAGCGCCGAGC MEME-9 chr1 - 234612506 234612517 2.38e-05 0.16 CGAGCCCAGAAC
VGAGCGCCGAGC MEME-9 chr3 - 15099137 15099148 2.42e-05 0.16 CGAGTTCCGAGC
VGAGCGCCGAGC MEME-9 chr6 + 104859761 104859772 2.46e-05 0.16 AGAGCACTGAGC
VGAGCGCCGAGC MEME-9 chr1 - 28648644 28648655 2.51e-05 0.16 CGCACGCAGAGC
VGAGCGCCGAGC MEME-9 chr3 + 173397806 173397817 2.56e-05 0.16 AGCGCGCGGAGC
VGAGCGCCGAGC MEME-9 chr3 + 141876064 141876075 2.59e-05 0.16 AGAGCCCAGAGA
VGAGCGCCGAGC MEME-9 chr3 + 141876096 141876107 2.59e-05 0.16 AGAGCCCAGAGA
VGAGCGCCGAGC MEME-9 chr3 + 141876128 141876139 2.59e-05 0.16 AGAGCCCAGAGA
VGAGCGCCGAGC MEME-9 chr3 + 141876160 141876171 2.59e-05 0.16 AGAGCCCAGAGA
VGAGCGCCGAGC MEME-9 chr19 + 39341913 39341924 2.71e-05 0.165 AGAAAGCCGAGC
VGAGCGCCGAGC MEME-9 chr12 + 110502233 110502244 2.73e-05 0.165 AGAGTGCAGAGA
VGAGCGCCGAGC MEME-9 chr1 + 161621615 161621626 2.92e-05 0.169 AGAGTGCTGAGC
VGAGCGCCGAGC MEME-9 chr12 - 56080071 56080082 2.96e-05 0.169 GGAACGCAGAGG
VGAGCGCCGAGC MEME-9 chr12 + 48815604 48815615 3.01e-05 0.169 AGCGTGCAGAGC
VGAGCGCCGAGC MEME-9 chr12 - 121872740 121872751 3.01e-05 0.169 AGAGCTCAGAGT
VGAGCGCCGAGC MEME-9 chr16 + 589320 589331 3.05e-05 0.169 CGAGCGCCGATT
VGAGCGCCGAGC MEME-9 chr1 + 91404824 91404835 3.05e-05 0.169 CGAGCGCCGATT
VGAGCGCCGAGC MEME-9 chrX + 153928575 153928586 3.05e-05 0.169 AGAGAACCGAGC
VGAGCGCCGAGC MEME-9 chr1 - 93079188 93079199 3.06e-05 0.169 CGAGCGCGGAGG
VGAGCGCCGAGC MEME-9 chr17 - 49497585 49497596 3.09e-05 0.169 CGCGCGCCGAGG
VGAGCGCCGAGC MEME-9 chr1 - 43368333 43368344 3.15e-05 0.169 CGAGCCCTGAGC
VGAGCGCCGAGC MEME-9 chr12 + 55830210 55830221 3.17e-05 0.169 CGATCACCGAGC
VGAGCGCCGAGC MEME-9 chr17 - 2101440 2101451 3.17e-05 0.169 AGAGTGCAGAGG
VGAGCGCCGAGC MEME-9 chr6 + 104859695 104859706 3.22e-05 0.169 CGCGCCCAGAGC
VGAGCGCCGAGC MEME-9 chr15 + 30903872 30903883 3.25e-05 0.169 GGCGCGCGGAGC
VGAGCGCCGAGC MEME-9 chr9 - 36258449 36258460 3.25e-05 0.169 CGAGCGACGAGT
VGAGCGCCGAGC MEME-9 chr5 - 41904408 41904419 3.27e-05 0.169 AGATCCCCGAGC
VGAGCGCCGAGC MEME-9 chr6 + 27605857 27605868 3.32e-05 0.169 GGAGCTCCGAAC
VGAGCGCCGAGC MEME-9 chr5 + 139274141 139274152 3.32e-05 0.169 GGAGCTCCGAAC
VGAGCGCCGAGC MEME-9 chr16 - 2205702 2205713 3.41e-05 0.171 GGAAAGCCGAGC
VGAGCGCCGAGC MEME-9 chr12 - 45216163 45216174 3.41e-05 0.171 GGAAAGCCGAGC
VGAGCGCCGAGC MEME-9 chr6 - 104859642 104859653 3.47e-05 0.173 GGCGCGCCGAGG
VGAGCGCCGAGC MEME-9 chr10 - 51074738 51074749 3.56e-05 0.174 GGATCACCGAGC
VGAGCGCCGAGC MEME-9 chr1 - 148264870 148264881 3.56e-05 0.174 GGATCACCGAGC
VGAGCGCCGAGC MEME-9 chr19 + 29606251 29606262 3.69e-05 0.179 CGAGCTCCGAGA
VGAGCGCCGAGC MEME-9 chr17 + 62757529 62757540 3.81e-05 0.183 GGAGCCCAGAGG
VGAGCGCCGAGC MEME-9 chr6 + 27505704 27505715 3.92e-05 0.187 AGAATGCAGAGT
VGAGCGCCGAGC MEME-9 chr19 - 43798998 43799009 4e-05 0.188 CGAGCCCCGATC
VGAGCGCCGAGC MEME-9 chr1 + 22342162 22342173 4.01e-05 0.188 CGCGCTCCGAGC
VGAGCGCCGAGC MEME-9 chr9 + 36258501 36258512 4.11e-05 0.191 GGAGTGCCGAAT
VGAGCGCCGAGC MEME-9 chr16 - 2205432 2205443 4.34e-05 0.201 CGAGCGTAGAGT
VGAGCGCCGAGC MEME-9 chr7 + 103347798 103347809 4.38e-05 0.201 GGAGCTCGGAGC
VGAGCGCCGAGC MEME-9 chr21 - 29002853 29002864 4.41e-05 0.201 AGAGTGCGGAGT
VGAGCGCCGAGC MEME-9 chr3 + 141876019 141876030 4.47e-05 0.202 GGAGCCCCGCGC
VGAGCGCCGAGC MEME-9 chr2 + 32039869 32039880 4.54e-05 0.203 GGCGCGCAGAAC
VGAGCGCCGAGC MEME-9 chr3 + 158110267 158110278 4.59e-05 0.204 GGAGCTCCGAGG
VGAGCGCCGAGC MEME-9 chr16 + 29816319 29816330 4.62e-05 0.204 GGAGTACCGAAC
VGAGCGCCGAGC MEME-9 chr1 + 148265144 148265155 4.79e-05 0.21 agagtccagagt
VGAGCGCCGAGC MEME-9 chr19 + 43901451 43901462 4.97e-05 0.216 AGAGCCTAGAGC
VGAGCGCCGAGC MEME-9 chr17 - 3965610 3965621 5.11e-05 0.22 AGAGCACAGAAT
VGAGCGCCGAGC MEME-9 chr16 - 21820549 21820560 5.44e-05 0.231 AGAACGAAGAGC
VGAGCGCCGAGC MEME-9 chr1 - 27914868 27914879 5.44e-05 0.231 AGCACGCCGAAC
VGAGCGCCGAGC MEME-9 chr5 + 58583121 58583132 5.52e-05 0.231 GGAGCGTGGAGC
VGAGCGCCGAGC MEME-9 chr15 + 66851451 66851462 5.52e-05 0.231 GGAGCGTGGAGC
VGAGCGCCGAGC MEME-9 chr19 + 38374437 38374448 5.58e-05 0.232 AGCGTCCCGAGC
VGAGCGCCGAGC MEME-9 chr3 - 158110018 158110029 5.67e-05 0.234 GGAATGCCGAGG
VGAGCGCCGAGC MEME-9 chr1 - 219928188 219928199 5.71e-05 0.234 GGCGCGCTGAGC
VGAGCGCCGAGC MEME-9 chr6 - 30908243 30908254 5.74e-05 0.234 AGAGCCCAGAAT
VGAGCGCCGAGC MEME-9 chr1 + 155308888 155308899 5.88e-05 0.236 CGATCGCGGAGC
VGAGCGCCGAGC MEME-9 chr19 - 39402766 39402777 5.88e-05 0.236 GGAGAGCAGAGT
VGAGCGCCGAGC MEME-9 chr17 - 3965157 3965168 6.01e-05 0.24 GGAGCGCTGAGG
VGAGCGCCGAGC MEME-9 chr16 + 589149 589160 6.15e-05 0.242 CGCGTCCCGAGC
VGAGCGCCGAGC MEME-9 chr6 - 8435770 8435781 6.15e-05 0.242 AGAGCGCCGATG
VGAGCGCCGAGC MEME-9 chr1 + 46179668 46179679 6.35e-05 0.247 GGATCACAGAGC
VGAGCGCCGAGC MEME-9 chr17 - 32483665 32483676 6.35e-05 0.247 GGATCACAGAGC
VGAGCGCCGAGC MEME-9 chr17 - 2030117 2030128 6.54e-05 0.253 AGAACGCGGAGA
VGAGCGCCGAGC MEME-9 chr5 - 69167145 69167156 6.6e-05 0.253 AGCACGCCGAGA
VGAGCGCCGAGC MEME-9 chr19 - 42176472 42176483 6.66e-05 0.254 CGAGAGCCGAGG
VGAGCGCCGAGC MEME-9 chr15 + 101723931 101723942 6.73e-05 0.255 GGACCACCGAgc
VGAGCGCCGAGC MEME-9 chr16 + 28292060 28292071 6.82e-05 0.255 CGAATGCAGAAC
VGAGCGCCGAGC MEME-9 chr15 + 75452558 75452569 6.82e-05 0.255 AGAGTACAGAAC
VGAGCGCCGAGC MEME-9 chr15 + 67254352 67254363 6.96e-05 0.258 GGAACGCCGAAG
VGAGCGCCGAGC MEME-9 chr19 - 44212792 44212803 7.12e-05 0.259 GGAGCGCGGATC
VGAGCGCCGAGC MEME-9 chr1 + 32394792 32394803 7.17e-05 0.259 GGATCCCAGAGC
VGAGCGCCGAGC MEME-9 chr14 + 88385513 88385524 7.17e-05 0.259 GGATCCCAGAGC
VGAGCGCCGAGC MEME-9 chr10 - 32980725 32980736 7.17e-05 0.259 AGAACCCAGAGA
VGAGCGCCGAGC MEME-9 chr19 + 35717043 35717054 7.24e-05 0.259 AGAAAGCCGAGT
VGAGCGCCGAGC MEME-9 chr1 + 36464460 36464471 7.24e-05 0.259 GGAGCTCAGAGA
VGAGCGCCGAGC MEME-9 chr10 + 75403410 75403421 7.33e-05 0.259 GGAGAGCCgagg
VGAGCGCCGAGC MEME-9 chr6 - 11094024 11094035 7.33e-05 0.259 GGAGAGCCGAGG
VGAGCGCCGAGC MEME-9 chr12 + 2004482 2004493 7.46e-05 0.259 AGATCGCAGAAC
VGAGCGCCGAGC MEME-9 chr1 + 182789365 182789376 7.46e-05 0.259 GGATTGCAGAGC
VGAGCGCCGAGC MEME-9 chr6 - 139027853 139027864 7.46e-05 0.259 AGAATGCAGAGA
VGAGCGCCGAGC MEME-9 chr16 - 2205626 2205637 7.62e-05 0.261 GGACCCCCGAGC
VGAGCGCCGAGC MEME-9 chr1 - 111990173 111990184 7.66e-05 0.261 CGCGCGCGGAGT
VGAGCGCCGAGC MEME-9 chr6 + 116371252 116371263 7.7e-05 0.261 GGAGCGCCGCGG
VGAGCGCCGAGC MEME-9 chr3 + 173397738 173397749 7.7e-05 0.261 GGAGCGCCGCGG
VGAGCGCCGAGC MEME-9 chr5 + 177367178 177367189 8.14e-05 0.274 GGAGCTCAGAGG
VGAGCGCCGAGC MEME-9 chr12 - 45991953 45991964 8.23e-05 0.275 AGAGCGCAGCAC
VGAGCGCCGAGC MEME-9 chr19 + 35717286 35717297 8.32e-05 0.275 GGCGCGCGGAGT
VGAGCGCCGAGC MEME-9 chr19 + 36773259 36773270 8.35e-05 0.275 AGAATGCAGAGG
VGAGCGCCGAGC MEME-9 chr7 - 100081900 100081911 8.35e-05 0.275 AGATCCCCGAGT
VGAGCGCCGAGC MEME-9 chr3 - 196192666 196192677 8.57e-05 0.281 GGAACACAGAGG
VGAGCGCCGAGC MEME-9 chr19 - 35740706 35740717 8.74e-05 0.285 CGAGCCCGGAGA
VGAGCGCCGAGC MEME-9 chr12 - 22544514 22544525 8.8e-05 0.285 CGCGCCCCGAGA
VGAGCGCCGAGC MEME-9 chr6 - 139375629 139375640 9e-05 0.289 AGAGCCCGGAGG
VGAGCGCCGAGC MEME-9 chr3 + 197749326 197749337 9.26e-05 0.289 AGAGTGCCGATT
VGAGCGCCGAGC MEME-9 chr3 - 14651619 14651630 9.28e-05 0.289 AGAGTGCGGAGG
VGAGCGCCGAGC MEME-9 chr17 + 68512274 68512285 9.32e-05 0.289 CGACCGCAGAGT
VGAGCGCCGAGC MEME-9 chr1 + 32817424 32817435 9.39e-05 0.289 AGAGAGTCGAGC
VGAGCGCCGAGC MEME-9 chr10 + 102117977 102117988 9.5e-05 0.289 GGAGCCCGGAGA
VGAGCGCCGAGC MEME-9 chr1 + 240612134 240612145 9.5e-05 0.289 GGAGCCCGGAGA
VGAGCGCCGAGC MEME-9 chr12 - 45216096 45216107 9.5e-05 0.289 GGAGCCCGGAGA
VGAGCGCCGAGC MEME-9 chr3 - 196432633 196432644 9.5e-05 0.289 GGAGCCCGGAGA
VGAGCGCCGAGC MEME-9 chr1 - 201114240 201114251 9.5e-05 0.289 GGAACCCAGAGG
VGAGCGCCGAGC MEME-9 chr12 + 6764736 6764747 9.56e-05 0.289 GGAGTACAGAGA
VGAGCGCCGAGC MEME-9 chrX + 41333878 41333889 9.56e-05 0.289 AGAACTCCGAGG
VGAGCGCCGAGC MEME-9 chr3 + 53347973 53347984 9.56e-05 0.289 AGAGCACAGAAA
VGAGCGCCGAGC MEME-9 chr15 + 69074306 69074317 9.77e-05 0.294 CGAGTCCAGAGA
VGAGCGCCGAGC MEME-9 chr16 + 14975971 14975982 9.85e-05 0.295 GGATCCCCGAGT
VGAGCGCCGAGC MEME-9 chr1 - 93079178 93079189 9.96e-05 0.297 GGAACACCGCGC

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif VGAGCGCCGAGC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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