# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Sun Mar 18 18:28:13 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB17.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Sun Mar 18 18:28:13 PDT 2018) # host: surya # when: Sun Mar 18 19:13:26 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.229 C 0.263 G 0.284 T 0.224 MOTIF CCAYYTA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CCAYYTA TARRTGG 137 24 2.2e-023 6.6e-019 # CCATCTA TAGATGG 108 17 2.4e-019 7.2e-015 # CCATTTA TAAATGG 28 3 1.8e-006 5.3e-002 # CCACCTA TAGGTGG 26 4 2.4e-005 7.2e-001 # CCACTTA TAAGTGG 8 0 3.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 249 E= 6.6e-019 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.152610 0.000000 0.847390 0.000000 0.791165 0.000000 0.208835 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TRGATGAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TRGATGAA TTCATCYA 104 16 7.8e-019 2.3e-014 # TGGATGAA TTCATCCA 91 16 2.5e-015 7.4e-011 # TAGATGAA TTCATCTA 21 2 2.9e-005 8.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 150 E= 2.3e-014 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCCRTCCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCCRTCCA TGGAYGGA 186 66 5.2e-018 1.5e-013 # TCCATCCA TGGATGGA 182 65 2.0e-017 5.8e-013 # TCCGTCCA TGGACGGA 20 1 9.1e-006 2.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 715 E= 1.5e-013 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.970629 0.000000 0.029371 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGCGCCGM DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGCGCCGM KCGGCGCT 29 1 2.1e-008 6.0e-004 # AGCGCCGA TCGGCGCT 21 1 4.7e-006 1.3e-001 # AGCGCCGC GCGGCGCT 8 0 3.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 6.0e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.733333 0.266667 0.000000 0.000000 MOTIF TCCACYCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TCCACYCA TGRGTGGA 57 15 1.5e-007 4.3e-003 # TCCACTCA TGAGTGGA 27 4 1.4e-005 3.9e-001 # TCCACCCA TGGGTGGA 35 11 2.1e-004 6.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 4.3e-003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.589744 0.000000 0.410256 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RACTACA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST RACTACA TGTAGTY 26 1 1.6e-007 4.7e-003 # GACTACA TGTAGTC 19 1 1.8e-005 5.1e-001 # AACTACA TGTAGTT 7 0 7.7e-003 2.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 27 E= 4.7e-003 0.259259 0.000000 0.740741 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AYTTCCG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AYTTCCG CGGAART 27 2 6.3e-007 1.8e-002 # ACTTCCG CGGAAGT 20 2 5.3e-005 1.5e+000 # ATTTCCG CGGAAAT 7 0 7.7e-003 2.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 28 E= 1.8e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 30.05 seconds