# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:11 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:13 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:19:08 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.222 C 0.277 G 0.279 T 0.222


MOTIF GTTCYA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTTCYA     TRGAAC        352         35   8.8e-095   2.9e-090
#           GTTCTA     TAGAAC        274         12   1.4e-082   4.6e-078
#           GTTCCA     TGGAAC        101         23   2.2e-014   7.4e-010

letter-probability matrix: alength= 4 w= 6 nsites= 424 E= 2.9e-090
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.287736 0.000000 0.712264
1.000000 0.000000 0.000000 0.000000


MOTIF AGAACM DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AGAACM     KGTTCT        150         51   6.2e-015   2.0e-010
#           AGAACC     GGTTCT        114         32   1.1e-013   3.6e-009
#           AGAACA     TGTTCT         45         21   1.7e-003   5.3e+001

letter-probability matrix: alength= 4 w= 6 nsites= 170 E= 2.0e-010
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.300000 0.700000 0.000000 0.000000


MOTIF CTAGAKC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CTAGAKC    GMTCTAG         55         13   6.4e-008   2.0e-003
#          CTAGAGC    GCTCTAG         37          8   5.4e-006   1.7e-001
#          CTAGATC    GATCTAG         21          5   1.1e-003   3.5e+001

letter-probability matrix: alength= 4 w= 7 nsites= 61 E= 2.0e-003
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.622951 0.377049
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 50.60 seconds