# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:03 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB12.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:04 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:57:19 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.226 C 0.274 G 0.277 T 0.223


MOTIF CYRGAAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CYRGAAC    GTTCYRG        341         33   2.1e-091   7.1e-087
#          CTAGAAC    GTTCTAG        236          8   1.4e-071   4.6e-067
#          CTGGAAC    GTTCCAG         76         10   7.6e-015   2.5e-010
#          CCAGAAC    GTTCTGG         38         10   2.2e-005   7.3e-001
#          CCGGAAC    GTTCCGG         19          5   3.0e-003   1.0e+002

letter-probability matrix: alength= 4 w= 7 nsites= 399 E= 7.1e-087
0.000000 1.000000 0.000000 0.000000
0.000000 0.145363 0.000000 0.854637
0.734336 0.000000 0.265664 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGTTCY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGTTCY     RGAACC        175         71   4.4e-014   1.4e-009
#           GGTTCT     AGAACC        105         39   2.2e-009   7.2e-005
#           GGTTCC     GGAACC         83         33   6.1e-007   2.0e-002

letter-probability matrix: alength= 4 w= 6 nsites= 205 E= 1.4e-009
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.434146 0.000000 0.565854


MOTIF TGACTCR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TGACTCR    YGAGTCA         46          3   1.6e-011   5.0e-007
#          TGACTCA    TGAGTCA         38          3   3.1e-009   9.9e-005
#          TGACTCG    CGAGTCA          8          0   3.8e-003   1.2e+002

letter-probability matrix: alength= 4 w= 7 nsites= 47 E= 5.0e-007
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.829787 0.000000 0.170213 0.000000


MOTIF CTAGAKC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CTAGAKC    GMTCTAG         58         12   4.5e-009   1.4e-004
#          CTAGAGC    GCTCTAG         44          8   1.2e-007   3.7e-003
#          CTAGATC    GATCTAG         18          4   2.0e-003   6.3e+001

letter-probability matrix: alength= 4 w= 7 nsites= 63 E= 1.4e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.682540 0.317460
0.000000 1.000000 0.000000 0.000000


MOTIF CCCCDCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCDCCC   GGGHGGGG         57         17   8.4e-007   2.6e-002
#         CCCCGCCC   GGGCGGGG         23          6   1.0e-003   3.2e+001
#         CCCCTCCC   GGGAGGGG         21          7   5.8e-003   1.8e+002
#         CCCCACCC   GGGTGGGG         15          4   9.1e-003   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 2.6e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.290323 0.000000 0.370968 0.338710
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 104.09 seconds