Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
AAYAMAYAMAYAMAYAMAYAMATAMAYAMAYAA 33 AATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAAWWAAANWWD 22 ATAAATAAATAAAAAAAACAAA
KSHGKGYGCGKGNGKGBGNGSG 22 GGTGGGTGCGGGGGTGTGTGCG
ACAGAGCRAGACTCYRTCTCAA 22 ACAGAGCGAGACTCTGTCTCAA
TCACGCCTGYAATCCCMGCACTTTGGGAGGCCGARGCRGGYGG 43 TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGG
TGAGGTCAGGAGTTYGAGACCAKCCTGRCMA 31 TGAGGTCAGGAGTTCGAGACCAGCCTGGCCA
CCCSCSYCCBSSCCCCGCCCCB 22 CCCGCCCCCCCGCCCCGCCCCC
TTTGATATTTTATGTACAGTATATAATAYAT 31 TTTGATATTTTATGTACAGTATATAATACAT
TGAGTCA 7 TGAGTCA
AGAGGGAGAGRGARRGRGARAG 22 AGAGGGAGAGAGAAAGGGAGAG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.227 C 0.273 G 0.273 T 0.227

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
TGAGTCA MEME-9 chr10 - 625290 625296 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 630862 630868 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 630899 630905 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 630978 630984 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 631017 631023 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 631063 631069 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 631102 631108 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 631142 631148 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 1064288 1064294 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 1064387 1064393 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 - 1115267 1115273 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr9 + 1458673 1458679 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr9 + 1458740 1458746 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr5 + 1950917 1950923 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr5 + 1951011 1951017 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr16 + 3020976 3020982 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr16 - 3021121 3021127 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 - 3314409 3314415 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 - 3314864 3314870 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 - 3890212 3890218 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 - 3890337 3890343 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr3 + 5023364 5023370 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr3 + 5023372 5023378 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr3 - 5023543 5023549 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 - 6223405 6223411 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 + 6223480 6223486 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr19 - 9075760 9075766 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 + 10212367 10212373 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 + 11344630 11344636 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr4 + 13640384 13640390 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr19 + 13731300 13731306 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 + 13731456 13731462 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 14929664 14929670 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr16 + 15590994 15591000 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr16 + 15591116 15591122 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr1 + 16122919 16122925 5.41e-05 0.196 Tgagtca
TGAGTCA MEME-9 chr8 + 17026793 17026799 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 + 17115143 17115149 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr10 + 17228525 17228531 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr16 - 19555408 19555414 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr20 - 20211593 20211599 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr16 - 21511654 21511660 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr22 + 24727306 24727312 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 - 25333867 25333873 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr7 - 25856861 25856867 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr22 - 27213004 27213010 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 + 28425648 28425654 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr1 + 28885114 28885120 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 28885256 28885262 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr21 - 29217875 29217881 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 - 33473173 33473179 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 - 33473523 33473529 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr21 + 34845898 34845904 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr21 - 34888137 34888143 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 + 36070501 36070507 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 - 36070595 36070601 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 - 36070744 36070750 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 + 36140064 36140070 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 - 39770115 39770121 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr22 + 40711702 40711708 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr19 + 40750287 40750293 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 + 40831916 40831922 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 + 40920957 40920963 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr19 + 40921196 40921202 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr13 - 41132693 41132699 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 41870270 41870276 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 41870290 41870296 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr1 + 41870330 41870336 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr13 + 42720592 42720598 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr6 + 43322125 43322131 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr6 - 43322288 43322294 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr19 - 43755054 43755060 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr20 + 44018379 44018385 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 - 44752991 44752997 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 + 45321084 45321090 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr20 + 46085307 46085313 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr2 + 46481792 46481798 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr12 - 47706020 47706026 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr13 - 48727422 48727428 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr18 + 49656086 49656092 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr18 + 49656385 49656391 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr13 + 51638644 51638650 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr20 - 53899820 53899826 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 + 57112278 57112284 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 + 57782478 57782484 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr17 + 59829312 59829318 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 + 59829464 59829470 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 - 63419278 63419284 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 - 63419306 63419312 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 - 63419334 63419340 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr11 - 65382477 65382483 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr11 + 65382538 65382544 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr11 - 65472245 65472251 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 + 65628405 65628411 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr15 + 67792637 67792643 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 - 68381131 68381137 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 68384508 68384514 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 - 68808898 68808904 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 - 70477873 70477879 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr15 + 70526766 70526772 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 - 71426838 71426844 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 + 71438963 71438969 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 - 72204400 72204406 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr15 + 74546293 74546299 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr5 + 74632307 74632313 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr14 - 76486393 76486399 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 + 77233842 77233848 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr7 + 80877118 80877124 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr17 + 81094993 81094999 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr6 - 82260496 82260502 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr9 - 85402241 85402247 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr9 + 85743248 85743254 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr8 - 86108873 86108879 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr13 + 87124148 87124154 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr10 + 87762025 87762031 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr2 + 88330308 88330314 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 + 89701863 89701869 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr2 - 100903051 100903057 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr10 - 104329535 104329541 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr13 + 113493469 113493475 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr12 + 114914453 114914459 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr7 + 116218492 116218498 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr5 + 124909082 124909088 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr9 + 129488678 129488684 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr7 - 133492275 133492281 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr5 + 134850825 134850831 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr6 + 137853734 137853740 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 150235719 150235725 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr5 + 174371793 174371799 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr5 - 174382836 174382842 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 175471148 175471154 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr2 + 175805704 175805710 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr1 + 182617934 182617940 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr1 - 183060624 183060630 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr4 - 185913003 185913009 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr3 + 190973149 190973155 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr3 + 194089790 194089796 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr3 + 196318532 196318538 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr1 - 198763598 198763604 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 212596512 212596518 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 214439704 214439710 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 219325234 219325240 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 219325455 219325461 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 225654824 225654830 5.41e-05 0.196 tgagtca
TGAGTCA MEME-9 chr1 - 228861374 228861380 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 + 232704967 232704973 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 232704983 232704989 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 234700399 234700405 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 234700532 234700538 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 235504969 235504975 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097080 236097086 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097119 236097125 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097148 236097154 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097177 236097183 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097206 236097212 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097235 236097241 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097264 236097270 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097293 236097299 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097322 236097328 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097351 236097357 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr1 - 236097380 236097386 5.41e-05 0.196 TGAGTCA
TGAGTCA MEME-9 chr2 + 237128492 237128498 5.41e-05 0.196 TGAGTCA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_9 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TGAGTCA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_9
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZBTB1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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