# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:09 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:11 PST 2017) # host: wotan # when: Mon Dec 18 16:19:46 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.187 C 0.314 G 0.315 T 0.184 MOTIF ATGGCNG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGGCNG CNGCCAT 318 30 1.2e-083 3.6e-079 # ATGGCGG CCGCCAT 226 10 3.3e-065 1.0e-060 # ATGGCCG CGGCCAT 63 12 2.7e-010 8.4e-006 # ATGGCTG CAGCCAT 40 5 2.3e-008 7.3e-004 # ATGGCAG CTGCCAT 32 4 7.0e-007 2.2e-002 letter-probability matrix: alength= 4 w= 7 nsites= 376 E= 3.6e-079 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090426 0.164894 0.632979 0.111702 0.000000 0.000000 1.000000 0.000000 MOTIF AAVATGG DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AAVATGG CCATBTT 89 9 3.1e-019 9.4e-015 # AAGATGG CCATCTT 49 3 2.1e-012 6.4e-008 # AACATGG CCATGTT 21 2 2.9e-005 8.7e-001 # AAAATGG CCATTTT 23 4 1.3e-004 4.1e+000 letter-probability matrix: alength= 4 w= 7 nsites= 104 E= 9.4e-015 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.211538 0.557692 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AYTTCC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AYTTCC GGAART 98 25 8.9e-013 2.7e-008 # ACTTCC GGAAGT 69 13 2.8e-011 8.5e-007 # ATTTCC GGAAAT 33 12 1.0e-003 3.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 112 E= 2.7e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.696429 0.000000 0.303571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF MCGGAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST MCGGAA TTCCGK 94 38 1.4e-007 4.0e-003 # CCGGAA TTCCGG 67 27 1.1e-005 3.2e-001 # ACGGAA TTCCGT 31 11 1.2e-003 3.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 108 E= 4.0e-003 0.314815 0.685185 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCGCCDCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCGCCDCC GGHGGCGG 70 23 2.0e-007 6.0e-003 # CCGCCGCC GGCGGCGG 38 11 5.2e-005 1.5e+000 # CCGCCTCC GGAGGCGG 23 7 2.3e-003 6.9e+001 # CCGCCACC GGTGGCGG 19 6 6.8e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 6.0e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.233766 0.000000 0.454545 0.311688 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACGTGAC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CACGTGAC GTCACGTG 19 0 1.7e-006 4.8e-002 # CACGTGAC GTCACGTG 19 0 1.7e-006 4.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.8e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 86.52 seconds