# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered (Wed Dec 27 12:08:59 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/YY1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Dec 27 12:08:59 PST 2017)
#        host: kadru
#        when: Wed Dec 27 12:25:42 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.186 C 0.315 G 0.319 T 0.180


MOTIF AANATGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AANATGGC   GCCATNTT        261          3   2.8e-089   8.5e-085
#         AAGATGGC   GCCATCTT        152          2   1.2e-047   3.6e-043
#         AACATGGC   GCCATGTT         62          1   1.4e-018   4.3e-014
#         AAAATGGC   GCCATTTT         53          0   3.3e-017   1.0e-012
#         AATATGGC   GCCATATT         13          0   1.1e-004   3.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 290 E= 8.5e-085
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.182759 0.213793 0.558621 0.044828
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATGGCBGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGCBGC   GCVGCCAT        101         11   2.8e-021   8.5e-017
#         ATGGCGGC   GCCGCCAT         59          2   2.0e-016   6.1e-012
#         ATGGCTGC   GCAGCCAT         20          2   5.3e-005   1.6e+000
#         ATGGCCGC   GCGGCCAT         28          7   2.1e-004   6.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 8.5e-017
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.254717 0.556604 0.188679
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGAAR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GGAAR      YTTCC        340        232   2.8e-010   8.4e-006
#            GGAAG      CTTCC        252        172   8.7e-007   2.6e-002
#            GGAAA      TTTCC        144         91   7.4e-005   2.2e+000

letter-probability matrix: alength= 4 w= 5 nsites= 489 E= 8.4e-006
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.341513 0.000000 0.658487 0.000000


MOTIF CGYCGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CGYCGCC    GGCGRCG         98         37   1.3e-008   3.8e-004
#          CGCCGCC    GGCGGCG         79         28   1.3e-007   3.7e-003
#          CGTCGCC    GGCGACG         26         11   9.1e-003   2.6e+002

letter-probability matrix: alength= 4 w= 7 nsites= 108 E= 3.8e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.777778 0.000000 0.222222
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.19 seconds