# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/WT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/WT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/WT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/WT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:08 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/WT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:10 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:18:53 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.277 C 0.224 G 0.224 T 0.274


MOTIF DGGGAGK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     DGGGAGK    MCTCCCH        364        109   3.2e-053   9.7e-049
#          AGGGAGG    CCTCCCT        145         33   6.6e-021   2.0e-016
#          AGGGAGT    ACTCCCT        107         15   2.7e-020   8.3e-016
#          TGGGAGG    CCTCCCA         68         18   8.7e-009   2.6e-004
#          GGGGAGG    CCTCCCC         91         40   1.4e-006   4.4e-002
#          GGGGAGT    ACTCCCC         42         11   7.4e-006   2.3e-001
#          TGGGAGT    ACTCCCA         42         12   1.8e-005   5.4e-001

letter-probability matrix: alength= 4 w= 7 nsites= 619 E= 9.7e-049
0.546042 0.000000 0.268174 0.185784
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.654281 0.345719


MOTIF RYAAACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     RYAAACA    TGTTTRY        162         31   1.4e-026   4.0e-022
#          GTAAACA    TGTTTAC         46          5   5.7e-010   1.7e-005
#          ATAAACA    TGTTTAT         64         14   1.4e-009   4.2e-005
#          ACAAACA    TGTTTGT         41          6   5.3e-008   1.6e-003
#          GCAAACA    TGTTTGC         25          6   3.8e-004   1.1e+001

letter-probability matrix: alength= 4 w= 7 nsites= 185 E= 4.0e-022
0.616216 0.000000 0.383784 0.000000
0.000000 0.378378 0.000000 0.621622
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATWAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATWAA      TTWAT        355        222   9.5e-015   2.8e-010
#            ATAAA      TTTAT        246        134   2.2e-012   6.4e-008
#            ATTAA      TTAAT        182        126   1.4e-004   4.0e+000

letter-probability matrix: alength= 4 w= 5 nsites= 532 E= 2.8e-010
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.605263 0.000000 0.000000 0.394737
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTAAWTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GTAAWTA    TAWTTAC         44          5   2.0e-009   5.6e-005
#          GTAAATA    TATTTAC         30          5   8.6e-006   2.4e-001
#          GTAATTA    TAATTAC         15          0   2.8e-005   7.8e-001

letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 5.6e-005
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.673913 0.000000 0.000000 0.326087
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TGACTCA    TGAGTCA         44          7   3.4e-008   9.4e-004
#          TGACTCA    TGAGTCA         44          7   3.4e-008   9.4e-004

letter-probability matrix: alength= 4 w= 7 nsites= 44 E= 9.4e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCTGTK DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GCTGTK     MACAGC         82         32   5.0e-007   1.4e-002
#           GCTGTG     CACAGC         42         17   5.9e-004   1.6e+001
#           GCTGTT     AACAGC         40         17   1.3e-003   3.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 85 E= 1.4e-002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.529412 0.470588


# Stopping reason: E-value threshold exceeded
#    Running time: 81.02 seconds