# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 DDWAGGGAGKRDDNRD MEME-1 DDWAGGGAGKRDDNRD 3.8e-053 5.1e-056 -127.32 0.0 165 485 384 572 0.34021 2.1e-058 242 1 CSYCYCCTCCCTCCCYYYCTBCCYCCYCCYC MEME-2 CSYCYCCTCCCTCCCYYYCTBCCYCCYCCYC 8.4e-001 1.1e-003 -6.78 0.0 74 470 94 380 0.15745 4.8e-006 234 1 WBTGTTTRYTTT MEME-3 WBTGTTTRYTTT 7.9e-013 1.1e-015 -34.47 0.0 175 489 272 496 0.35787 4.4e-018 244 2 DGGGAGK DREME-1 AGGGAGK 3.2e-046 4.3e-049 -111.36 0.0 160 494 338 522 0.32389 1.8e-051 246 2 RYAAACA DREME-2 RYAAACA 1.5e-015 2.1e-018 -40.71 0.0 168 494 198 335 0.34008 8.5e-021 246 2 ATWAA DREME-3 ATWAA 2.5e-002 3.4e-005 -10.29 0.0 146 496 215 540 0.29435 1.4e-007 247 2 GTAAWTA DREME-4 GTAAATA 2.7e-004 3.7e-007 -14.81 0.0 130 494 71 142 0.26316 1.5e-009 246 2 TGACTCA DREME-5 TGACTCA 1.3e-002 1.8e-005 -10.94 0.0 290 494 102 125 0.58704 7.2e-008 246 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGKRAGTGCNN 2.0e-001 2.6e-004 -8.24 0.0 66 490 118 567 0.13469 1.1e-006 244 3 M0405_1.02 (KLF7)_(Mus_musculus)_(DBD_1.00) DGGGCGKGGY 2.0e-008 2.6e-011 -24.36 0.0 85 491 176 594 0.17312 1.1e-013 245 3 M0443_1.02 (KLF12)_(Mus_musculus)_(DBD_1.00) DGGGYGKGKY 1.8e-003 2.4e-006 -12.93 0.0 53 491 110 591 0.10794 9.9e-009 245 3 M0718_1.02 FOXK1 DNRTMAACAH 3.9e-014 5.2e-017 -37.49 0.0 169 491 304 578 0.34420 2.1e-019 245 3 M0719_1.02 FOXG1 RTAAACAW 4.1e-012 5.6e-015 -32.82 0.0 167 493 279 541 0.33874 2.3e-017 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 1.2e-007 1.6e-010 -22.53 0.0 111 489 203 566 0.22699 6.7e-013 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 1.5e-011 2.0e-014 -31.56 0.0 169 493 291 568 0.34280 8.0e-017 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 1.1e-006 1.5e-009 -20.33 0.0 175 491 285 574 0.35642 6.0e-012 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 1.8e-016 2.5e-019 -42.84 0.0 171 491 312 573 0.34827 1.0e-021 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 8.4e-009 1.1e-011 -25.21 0.0 176 492 272 525 0.35772 4.6e-014 245 3 M0890_1.02 LHX6 NYAATCAN 2.2e-001 2.9e-004 -8.13 0.0 213 493 300 563 0.43205 1.2e-006 246 3 M0891_1.02 TLX2 NTAAWNNNNN 7.3e0000 9.9e-003 -4.62 0.0 129 491 39 83 0.26273 4.0e-005 245 3 M0892_1.02 EMX1 NYTAATKAVN 1.2e-006 1.6e-009 -20.26 0.0 175 491 278 559 0.35642 6.5e-012 245 3 M0893_1.02 ZFHX2 NNTAATTANN 2.0e-004 2.7e-007 -15.11 0.0 291 491 378 525 0.59267 1.1e-009 245 3 M0894_1.02 LBX1 TTAATTAG 2.7e-009 3.6e-012 -26.36 0.0 175 493 280 543 0.35497 1.5e-014 246 3 M0896_1.02 VENTX TTAATTAG 2.6e-011 3.5e-014 -30.98 0.0 189 493 302 541 0.38337 1.4e-016 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 4.1e-017 5.5e-020 -44.35 0.0 199 491 338 554 0.40530 2.2e-022 245 3 M0900_1.02 SHOX HTAATTRV 9.6e-006 1.3e-008 -18.16 0.0 175 493 273 557 0.35497 5.3e-011 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.1e-010 1.5e-013 -29.55 0.0 178 492 277 517 0.36179 6.0e-016 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 9.3e-004 1.3e-006 -13.59 0.0 115 491 171 488 0.23422 5.1e-009 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 2.3e-006 3.2e-009 -19.57 0.0 204 492 301 538 0.41463 1.3e-011 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 6.2e-003 8.4e-006 -11.69 0.0 287 493 367 527 0.58215 3.4e-008 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 2.3e-008 3.2e-011 -24.18 0.0 194 494 267 477 0.39271 1.3e-013 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 2.5e-005 3.4e-008 -17.21 0.0 242 494 352 565 0.48988 1.4e-010 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 9.1e-005 1.2e-007 -15.92 0.0 116 492 197 561 0.23577 5.0e-010 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 1.1e-004 1.5e-007 -15.74 0.0 238 492 348 568 0.48374 6.0e-010 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 2.9e-004 4.0e-007 -14.74 0.0 120 492 197 549 0.24390 1.6e-009 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 4.8e-010 6.5e-013 -28.06 0.0 158 492 268 555 0.32114 2.7e-015 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 1.7e-012 2.3e-015 -33.72 0.0 264 492 165 200 0.53659 9.3e-018 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 6.4e-010 8.6e-013 -27.78 0.0 184 492 288 532 0.37398 3.5e-015 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATYA 2.7e-011 3.6e-014 -30.95 0.0 177 493 246 446 0.35903 1.5e-016 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 6.9e-013 9.3e-016 -34.61 0.0 162 492 280 550 0.32927 3.8e-018 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 1.2e-008 1.6e-011 -24.86 0.0 176 492 278 540 0.35772 6.5e-014 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.7e-008 2.3e-011 -24.51 0.0 184 492 280 524 0.37398 9.3e-014 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 6.3e-009 8.6e-012 -25.48 0.0 185 493 289 539 0.37525 3.5e-014 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 2.0e-009 2.8e-012 -26.62 0.0 176 492 292 566 0.35772 1.1e-014 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 9.2e-008 1.2e-010 -22.81 0.0 111 491 201 558 0.22607 5.1e-013 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 1.3e-019 1.8e-022 -50.09 0.0 177 491 316 548 0.36049 7.2e-025 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 4.5e-013 6.0e-016 -35.04 0.0 176 492 292 539 0.35772 2.5e-018 245 3 M1863_1.02 FOXD1 GTAAACAW 1.0e-010 1.4e-013 -29.60 0.0 115 493 212 546 0.23327 5.7e-016 246 3 M2267_1.02 CDX2 TTTTATKRCHB 2.9e-008 3.9e-011 -23.98 0.0 132 490 220 527 0.26939 1.6e-013 244 3 M2270_1.02 DUX4 TAAYYYAATCA 3.5e-003 4.7e-006 -12.28 0.0 160 490 222 497 0.32653 1.9e-008 244 3 M2273_1.02 E2F6 RGGCGGGARRV 1.0e-005 1.4e-008 -18.09 0.0 162 490 263 569 0.33061 5.7e-011 244 3 M2281_1.02 FOXH1 BNSAATCCACA 2.6e-001 3.5e-004 -7.97 0.0 102 490 157 533 0.20816 1.4e-006 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 1.8e-004 2.4e-007 -15.24 0.0 172 486 268 559 0.35391 9.9e-010 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 7.6e-008 1.0e-010 -23.01 0.0 146 488 232 516 0.29918 4.2e-013 243 3 M2292_1.02 JUND DRTGASTCATS 3.9e0000 5.3e-003 -5.24 0.0 220 490 264 487 0.44898 2.2e-005 244 3 M2385_1.02 FOXP2 RWGTAAACAVR 4.0e-014 5.3e-017 -37.47 0.0 138 490 255 553 0.28163 2.2e-019 244 3 M2391_1.02 KLF5 DGGGHGGGGC 1.5e-003 2.1e-006 -13.09 0.0 181 491 278 574 0.36864 8.4e-009 245 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 6.6e-012 8.9e-015 -32.35 0.0 140 486 258 568 0.28807 3.7e-017 242 3 M4619_1.02 FOSL1 BGGTGASTCAT 2.6e0000 3.5e-003 -5.65 0.0 264 490 295 464 0.53878 1.4e-005 244 3 M5209_1.02 (SP5)_(Drosophila_melanogaster)_(DBD_0.93) GKGGGCGKRKC 6.4e-004 8.6e-007 -13.96 0.0 54 490 108 554 0.11020 3.5e-009 244 3 M5284_1.02 ALX3 BNTAATTRGY 1.2e-005 1.6e-008 -17.93 0.0 117 491 197 544 0.23829 6.7e-011 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 7.4e-003 9.9e-006 -11.52 0.0 166 488 229 501 0.34016 4.1e-008 243 3 M5291_1.02 ARX YTAATTNRATTAN 2.4e0000 3.2e-003 -5.74 0.0 156 488 197 478 0.31967 1.3e-005 243 3 M5294_1.02 BARHL2 NHTAAAYGNY 8.4e-003 1.1e-005 -11.39 0.0 155 491 236 557 0.31568 4.6e-008 245 3 M5310_1.02 BSX NTAATBRS 1.9e-009 2.6e-012 -26.67 0.0 175 493 284 550 0.35497 1.1e-014 246 3 M5339_1.02 DLX1 NNTAATTRNN 2.2e-002 3.0e-005 -10.42 0.0 117 491 186 553 0.23829 1.2e-007 245 3 M5342_1.02 DLX4 NTAATTRN 6.6e-006 8.9e-009 -18.54 0.0 111 493 196 566 0.22515 3.6e-011 246 3 M5343_1.02 DLX5 NTAATTRN 1.8e-004 2.4e-007 -15.23 0.0 111 493 189 561 0.22515 9.8e-010 246 3 M5344_1.02 DLX6 NTAATTRB 3.9e-008 5.2e-011 -23.68 0.0 169 493 278 565 0.34280 2.1e-013 246 3 M5345_1.02 DMBX1 NHTAATCCBH 2.5e0000 3.3e-003 -5.71 0.0 65 491 113 580 0.13238 1.4e-005 245 3 M5348_1.02 DRGX NTAATYHAATTAN 1.7e-002 2.3e-005 -10.67 0.0 174 488 231 489 0.35656 9.6e-008 243 3 M5349_1.02 DUXA NTRAYYTAATCAN 7.4e-005 9.9e-008 -16.12 0.0 292 488 379 520 0.59836 4.1e-010 243 3 M5388_1.02 EMX2 NYTAATTAVB 6.8e-006 9.2e-009 -18.50 0.0 147 491 229 527 0.29939 3.8e-011 245 3 M5390_1.02 EN1 VBTAATTRSB 6.7e-005 9.0e-008 -16.22 0.0 175 491 270 557 0.35642 3.7e-010 245 3 M5394_1.02 EN2 NNTAATTRVN 5.9e-005 7.9e-008 -16.35 0.0 117 491 197 553 0.23829 3.2e-010 245 3 M5414_1.02 ESX1 DNTAATTRRN 5.4e-009 7.3e-012 -25.65 0.0 175 491 288 562 0.35642 3.0e-014 245 3 M5427_1.02 EVX1 SNTAATYABB 8.2e-006 1.1e-008 -18.33 0.0 161 491 255 551 0.32790 4.5e-011 245 3 M5428_1.02 EVX2 NNTAATKABB 2.3e-008 3.1e-011 -24.19 0.0 159 491 263 553 0.32383 1.3e-013 245 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 8.0e0000 1.1e-002 -4.53 0.0 123 487 170 514 0.25257 4.4e-005 243 3 M5446_1.02 FOXD4L2 RTAAACA 3.3e-017 4.5e-020 -44.55 0.0 170 494 310 571 0.34413 1.8e-022 246 3 M5460_1.02 FOXL1 RTAAACA 1.4e-018 1.9e-021 -47.71 0.0 170 494 312 567 0.34413 7.8e-024 246 3 M5471_1.02 FOXO6 GTAAACATGTTTAC 2.3e0000 3.1e-003 -5.77 0.0 227 487 139 229 0.46612 1.3e-005 243 3 M5480_1.02 GBX1 RBTAATTRGB 5.2e-007 7.0e-010 -21.08 0.0 111 491 190 529 0.22607 2.8e-012 245 3 M5481_1.02 GBX2 NYTAATTRSB 5.2e-006 7.1e-009 -18.77 0.0 115 491 197 548 0.23422 2.9e-011 245 3 M5500_1.02 GSC VYTAATCCBH 8.6e0000 1.2e-002 -4.46 0.0 165 491 238 573 0.33605 4.8e-005 245 3 M5502_1.02 GSX1 NBTAATKRSN 1.1e-009 1.5e-012 -27.21 0.0 193 491 312 562 0.39308 6.2e-015 245 3 M5503_1.02 GSX2 DYTAATKRVN 3.8e-010 5.2e-013 -28.29 0.0 195 491 316 561 0.39715 2.1e-015 245 3 M5518_1.02 HMX1 NDTTAATTGNT 6.8e-008 9.1e-011 -23.12 0.0 112 490 203 556 0.22857 3.7e-013 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 9.4e-006 1.3e-008 -18.19 0.0 112 490 197 562 0.22857 5.2e-011 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 2.0e-002 2.7e-005 -10.52 0.0 112 490 184 567 0.22857 1.1e-007 244 3 M5541_1.02 HOXB2 NNTAATKANN 1.4e-008 1.8e-011 -24.71 0.0 159 491 265 556 0.32383 7.5e-014 245 3 M5542_1.02 HOXB3 NYTAATKRNN 2.3e-008 3.1e-011 -24.19 0.0 175 491 284 558 0.35642 1.3e-013 245 3 M5543_1.02 HOXB5 NHTAATKRNN 3.7e-010 5.1e-013 -28.31 0.0 175 491 295 569 0.35642 2.1e-015 245 3 M5544_1.02 HOXC10 DTTTWATKDB 1.0e-005 1.4e-008 -18.08 0.0 161 491 258 561 0.32790 5.7e-011 245 3 M5547_1.02 HOXC11 DGTCRTWAAAH 1.8e-006 2.4e-009 -19.85 0.0 194 490 286 529 0.39592 9.8e-012 244 3 M5551_1.02 HOXC12 TTTTATTRC 8.9e-006 1.2e-008 -18.24 0.0 116 492 198 551 0.23577 4.9e-011 245 3 M5553_1.02 HOXC13 CYAATAAAAH 8.8e-003 1.2e-005 -11.35 0.0 87 491 148 546 0.17719 4.8e-008 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 6.4e-003 8.7e-006 -11.66 0.0 185 491 250 504 0.37678 3.5e-008 245 3 M5557_1.02 HOXD12 GTAATAAAA 2.0e-004 2.7e-007 -15.11 0.0 164 492 252 550 0.33333 1.1e-009 245 3 M5563_1.02 HOXD8 VHWAATTADV 5.7e-001 7.7e-004 -7.16 0.0 105 491 166 559 0.21385 3.2e-006 245 3 M5583_1.02 ISL2 YTAAKTGC 3.5e-002 4.7e-005 -9.97 0.0 113 493 186 575 0.22921 1.9e-007 246 3 M5584_1.02 ISX YTAATCTAATTAR 2.3e-003 3.0e-006 -12.70 0.0 200 488 227 414 0.40984 1.3e-008 243 3 M5587_1.02 JDP2 ATGASTCAT 4.2e-003 5.7e-006 -12.08 0.0 184 492 227 453 0.37398 2.3e-008 245 3 M5593_1.02 KLF16 GGGGGCGTGKC 5.3e-001 7.2e-004 -7.24 0.0 64 490 109 542 0.13061 2.9e-006 244 3 M5602_1.02 LHX9 YTAATTRN 5.1e-007 6.8e-010 -21.11 0.0 175 493 279 560 0.35497 2.8e-012 246 3 M5604_1.02 LMX1A YTAATTAA 3.7e-008 5.0e-011 -23.72 0.0 197 493 298 536 0.39959 2.0e-013 246 3 M5605_1.02 LMX1B TTAATTRN 1.7e-006 2.3e-009 -19.90 0.0 111 493 193 546 0.22515 9.2e-012 246 3 M5623_1.02 MEOX1 VSTAATTAHC 5.7e-011 7.7e-014 -30.19 0.0 209 491 328 548 0.42566 3.1e-016 245 3 M5624_1.02 MEOX2 DSTAATTAWN 2.9e-009 3.9e-012 -26.26 0.0 207 491 325 557 0.42159 1.6e-014 245 3 M5631_1.02 MIXL1 NBTAATTRVN 4.3e-008 5.8e-011 -23.57 0.0 181 491 288 553 0.36864 2.4e-013 245 3 M5635_1.02 MNX1 TTTAATTRNH 9.3e-012 1.3e-014 -32.01 0.0 195 491 317 552 0.39715 5.1e-017 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 1.0e-001 1.3e-004 -8.92 0.0 247 483 270 429 0.51139 5.6e-007 241 3 M5672_1.02 NOTO NBTAATTARN 2.7e-004 3.7e-007 -14.81 0.0 175 491 264 549 0.35642 1.5e-009 245 3 M5714_1.02 PHOX2A TAATYYAATTA 2.3e-001 3.2e-004 -8.06 0.0 106 490 154 501 0.21633 1.3e-006 244 3 M5715_1.02 PHOX2B TAATYYAATTA 3.6e-001 4.9e-004 -7.62 0.0 106 490 155 509 0.21633 2.0e-006 244 3 M5746_1.02 POU6F2 WTAATKAGST 3.1e-009 4.2e-012 -26.20 0.0 173 491 277 541 0.35234 1.7e-014 245 3 M5771_1.02 RAX DYTAATTRRY 8.1e-005 1.1e-007 -16.03 0.0 111 491 189 554 0.22607 4.5e-010 245 3 M5772_1.02 RAX2 BTAATTRR 6.7e-007 9.1e-010 -20.82 0.0 115 493 204 561 0.23327 3.7e-012 246 3 M5807_1.02 SHOX2 YTAATTRR 4.6e-004 6.2e-007 -14.29 0.0 111 493 187 558 0.22515 2.5e-009 246 3 M5856_1.02 SP8 RGKGGGCGTGKY 3.9e0000 5.2e-003 -5.25 0.0 147 489 214 560 0.30061 2.2e-005 244 3 M5941_1.02 UNCX NTAATYBAATTAN 7.3e-001 9.8e-004 -6.93 0.0 172 488 239 535 0.35246 4.0e-006 243 3 M5944_1.02 VAX1 YTAATTAN 1.2e-009 1.6e-012 -27.14 0.0 201 493 316 552 0.40771 6.6e-015 246 3 M5945_1.02 VAX2 YTAATTAN 4.2e-009 5.6e-012 -25.91 0.0 207 493 322 555 0.41988 2.3e-014 246 3 M5949_1.02 VSX1 YTAATTAN 1.3e-004 1.8e-007 -15.53 0.0 117 493 190 536 0.23732 7.3e-010 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 6.5e-001 8.7e-004 -7.04 0.0 251 489 189 293 0.51329 3.6e-006 244 3 M6111_1.02 (ZNF652)_(Mus_musculus)_(DBD_1.00) NBAAAGGGTTAAH 2.9e0000 3.9e-003 -5.54 0.0 142 488 148 376 0.29098 1.6e-005 243 3 M6114_1.02 FOXA1 WAWGYAAAYA 2.5e-011 3.4e-014 -31.01 0.0 87 491 181 564 0.17719 1.4e-016 245 3 M6141_1.02 ALX1 TAATBYAATTAY 2.9e-001 3.9e-004 -7.85 0.0 179 489 244 523 0.36605 1.6e-006 244 3 M6157_1.02 BARX2 TYRWTAATKR 1.5e-003 2.0e-006 -13.13 0.0 173 491 255 542 0.35234 8.1e-009 245 3 M6166_1.02 CDC5L RWTAYRTTAAMWCVC 7.7e0000 1.0e-002 -4.57 0.0 100 486 145 520 0.20576 4.3e-005 242 3 M6180_1.02 CREB1 RTGACGTMA 2.0e0000 2.7e-003 -5.92 0.0 308 492 370 517 0.62602 1.1e-005 245 3 M6182_1.02 CRX YTAATCHB 2.1e-001 2.8e-004 -8.19 0.0 165 493 247 574 0.33469 1.1e-006 246 3 M6189_1.02 DLX3 GMTAATTRSW 3.8e-005 5.2e-008 -16.78 0.0 195 491 285 536 0.39715 2.1e-010 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 2.5e-010 3.3e-013 -28.74 0.0 120 488 225 566 0.24590 1.4e-015 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 1.3e-015 1.8e-018 -40.85 0.0 146 486 254 510 0.30041 7.5e-021 242 3 M6237_1.02 FOXD3 AAACAAACA 2.6e-006 3.4e-009 -19.49 0.0 138 492 229 553 0.28049 1.4e-011 245 3 M6238_1.02 FOXF1 WAAATAAACAW 1.1e-010 1.4e-013 -29.56 0.0 120 490 220 550 0.24490 5.9e-016 244 3 M6239_1.02 FOXF2 HWADGTAAACA 4.4e-012 5.9e-015 -32.76 0.0 118 490 223 553 0.24082 2.4e-017 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 2.3e-010 3.1e-013 -28.79 0.0 121 491 222 556 0.24644 1.3e-015 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 2.5e-001 3.3e-004 -8.01 0.0 118 488 175 523 0.24180 1.4e-006 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 4.9e-005 6.6e-008 -16.53 0.0 121 485 208 565 0.24948 2.7e-010 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 4.7e-006 6.3e-009 -18.88 0.0 242 488 365 576 0.49590 2.6e-011 243 3 M6247_1.02 FOXO4 MRTAAACAA 2.3e-009 3.1e-012 -26.50 0.0 170 492 283 563 0.34553 1.3e-014 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 1.9e-005 2.5e-008 -17.49 0.0 93 489 150 480 0.19018 1.0e-010 244 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 7.7e0000 1.0e-002 -4.56 0.0 104 486 142 489 0.21399 4.3e-005 242 3 M6289_1.02 HOXA9 WCATAAAYYRTH 2.7e-003 3.7e-006 -12.51 0.0 159 489 241 547 0.32515 1.5e-008 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 7.1e-004 9.5e-007 -13.86 0.0 114 490 186 544 0.23265 3.9e-009 244 3 M6292_1.02 HOXA5 CATTAATYAR 5.6e-006 7.6e-009 -18.70 0.0 191 491 283 533 0.38900 3.1e-011 245 3 M6297_1.02 HOXB7 MATYAATCAA 8.7e-002 1.2e-004 -9.05 0.0 165 491 216 485 0.33605 4.8e-007 245 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 2.7e-003 3.7e-006 -12.51 0.0 211 487 295 532 0.43326 1.5e-008 243 3 M6303_1.02 HOXD4 TTAATTKW 8.3e-001 1.1e-003 -6.80 0.0 121 493 182 551 0.24544 4.5e-006 246 3 M6304_1.02 HOXD9 HMATNAAWYT 1.6e-003 2.2e-006 -13.04 0.0 203 491 294 551 0.41344 8.9e-009 245 3 M6315_1.02 ISL1 SYTAATR 1.7e0000 2.3e-003 -6.06 0.0 336 494 414 541 0.68016 9.5e-006 246 3 M6329_1.02 LHX3 AAAATTAATTARY 1.4e-001 1.8e-004 -8.60 0.0 170 488 210 458 0.34836 7.6e-007 243 3 M6333_1.02 MAFG MATGACT 7.1e-001 9.5e-004 -6.96 0.0 184 494 264 567 0.37247 3.9e-006 246 3 M6336_1.02 MAZ RGGGDRGGGAGGGRGGG 1.3e0000 1.8e-003 -6.32 0.0 176 484 247 542 0.36364 7.5e-006 241 3 M6347_1.02 MSX2 TAATTNK 4.4e0000 5.9e-003 -5.13 0.0 106 494 158 548 0.21457 2.4e-005 246 3 M6356_1.02 MZF1 RGDGGGGAD 8.8e-002 1.2e-004 -9.04 0.0 56 492 108 588 0.11382 4.8e-007 245 3 M6357_1.02 NANOG KTTAATGG 5.1e0000 6.8e-003 -4.99 0.0 211 493 279 541 0.42799 2.8e-005 246 3 M6359_1.02 NFE2L1 NATGACD 2.4e-001 3.3e-004 -8.03 0.0 214 494 306 576 0.43320 1.3e-006 246 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 3.8e-002 5.2e-005 -9.87 0.0 113 489 173 527 0.23108 2.1e-007 244 3 M6379_1.02 NKX3-2 ARYTAAGTGGV 9.0e0000 1.2e-002 -4.42 0.0 140 490 209 577 0.28571 5.0e-005 244 3 M6380_1.02 NOBOX HTAATTRSY 5.4e-007 7.3e-010 -21.03 0.0 114 492 199 548 0.23171 3.0e-012 245 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 8.3e-002 1.1e-004 -9.10 0.0 148 486 224 554 0.30453 4.6e-007 242 3 M6415_1.02 PDX1 CTAATTACY 7.8e-009 1.1e-011 -25.28 0.0 194 492 292 525 0.39431 4.3e-014 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 1.5e-008 2.0e-011 -24.62 0.0 168 488 253 500 0.34426 8.4e-014 243 3 M6439_1.02 PRRX1 TAAYCTG 1.2e0000 1.6e-003 -6.44 0.0 32 494 64 557 0.06478 6.5e-006 246 3 M6440_1.02 PRRX2 YTAATTR 1.6e-004 2.1e-007 -15.37 0.0 180 494 270 549 0.36437 8.6e-010 246 3 M6477_1.02 SOX5 WAACAATR 8.4e0000 1.1e-002 -4.48 0.0 153 493 221 568 0.31034 4.7e-005 246 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.7e-003 2.3e-006 -13.00 0.0 185 487 266 532 0.37988 9.3e-009 243 3 M6534_1.02 VSX2 WDAGCTAATTA 2.5e-002 3.4e-005 -10.29 0.0 170 490 216 466 0.34694 1.4e-007 244 3 M6549_1.02 ZIC2 DGGGTGGTC 3.5e0000 4.7e-003 -5.36 0.0 74 492 127 593 0.15041 1.9e-005 245 3 M6555_1.02 ZNF333 BKATAATGA 1.8e0000 2.5e-003 -6.00 0.0 112 492 157 503 0.22764 1.0e-005 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).