******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:83097803-83098303 1.0000 100 chr10:1499589-1500089 1.0000 100 chr6:125946217-125946717 1.0000 100 chr20:25252755-25253255 1.0000 100 chr4:91064406-91064906 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chr10:101442021-10144252 1.0000 100 chr6:49541134-49541634 1.0000 100 chr5:158451510-158452010 1.0000 100 chr6:47134622-47135122 1.0000 100 chr5:69521094-69521594 1.0000 100 chr15:58332055-58332555 1.0000 100 chr8:109611137-109611637 1.0000 100 chr10:68153488-68153988 1.0000 100 chr8:124077232-124077732 1.0000 100 chr1:38783552-38784052 1.0000 100 chr18:395626-396126 1.0000 100 chr19:40831796-40832296 1.0000 100 chr3:42819866-42820366 1.0000 100 chr16:25049559-25050059 1.0000 100 chr1:151494689-151495189 1.0000 100 chr13:87123923-87124423 1.0000 100 chr7:159146514-159147014 1.0000 100 chr17:5526721-5527221 1.0000 100 chr5:17305899-17306399 1.0000 100 chr10:35195676-35196176 1.0000 100 chr1:175470978-175471478 1.0000 100 chr3:61821736-61822236 1.0000 100 chr19:38862526-38863026 1.0000 100 chr7:133492110-133492610 1.0000 100 chr21:32771755-32772255 1.0000 100 chr21:29217695-29218195 1.0000 100 chr14:34700080-34700580 1.0000 100 chr10:44752846-44753346 1.0000 100 chr4:80307286-80307786 1.0000 100 chr1:11178221-11178721 1.0000 100 chr4:173252274-173252774 1.0000 100 chr14:99821641-99822141 1.0000 100 chr5:94469756-94470256 1.0000 100 chr17:39769935-39770435 1.0000 100 chr6:43321930-43322430 1.0000 100 chr1:80403325-80403825 1.0000 100 chr1:233112912-233113412 1.0000 100 chr9:18976688-18977188 1.0000 100 chr12:25333748-25334248 1.0000 100 chr5:14156506-14157006 1.0000 100 chr19:34218183-34218683 1.0000 100 chr7:116218165-116218665 1.0000 100 chr10:76113918-76114418 1.0000 100 chr16:87388430-87388930 1.0000 100 chr15:98896842-98897342 1.0000 100 chr17:81393850-81394350 1.0000 100 chr10:93209006-93209506 1.0000 100 chr1:220119015-220119515 1.0000 100 chr17:3890048-3890548 1.0000 100 chr21:42974398-42974898 1.0000 100 chr17:48492600-48493100 1.0000 100 chr12:117128158-11712865 1.0000 100 chr10:22552765-22553265 1.0000 100 chr5:124740927-124741427 1.0000 100 chr8:37479278-37479778 1.0000 100 chr1:234700131-234700631 1.0000 100 chr1:86774438-86774938 1.0000 100 chr1:51517930-51518430 1.0000 100 chrX:14039338-14039838 1.0000 100 chr1:16122832-16123332 1.0000 100 chr15:67792456-67792956 1.0000 100 chr15:70494068-70494568 1.0000 100 chr1:214439363-214439863 1.0000 100 chr1:236097023-236097523 1.0000 100 chr8:37302571-37303071 1.0000 100 chr10:75379160-75379660 1.0000 100 chr3:181328952-181329452 1.0000 100 chr13:110965219-11096571 1.0000 100 chr17:77233781-77234281 1.0000 100 chr16:15590853-15591353 1.0000 100 chr17:78558309-78558809 1.0000 100 chr10:87845976-87846476 1.0000 100 chr5:59303274-59303774 1.0000 100 chr5:175378418-175378918 1.0000 100 chr9:85743180-85743680 1.0000 100 chr1:155244578-155245078 1.0000 100 chr17:8288217-8288717 1.0000 100 chr1:234723925-234724425 1.0000 100 chr6:82260156-82260656 1.0000 100 chr17:60173278-60173778 1.0000 100 chr5:124735035-124735535 1.0000 100 chr1:125179940-125180440 1.0000 100 chr17:8222298-8222798 1.0000 100 chr12:54359085-54359585 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.279 C 0.221 G 0.221 T 0.279 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.273 C 0.227 G 0.227 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF RTGAGTCAY MEME-1 width = 9 sites = 170 llr = 1477 E-value = 3.0e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGAGTCAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5::9:::a1 pos.-specific C 2:::::9:3 probability G 3:9:9:1:1 matrix T :a111a::5 bits 2.1 1.9 * * * 1.7 ** * * 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (12.5 bits) 0.9 ******* 0.6 ******* 0.4 ********* 0.2 ********* 0.0 --------- Multilevel ATGAGTCAT consensus G C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAGTCAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr13:95535180-95535680 - 17 4.84e-06 CTGAACTGCC ATGAGTCAT TCTCACCTCT chr10:63707208-63707708 + 33 4.84e-06 AAGGTAGTAA ATGAGTCAT TTTCCAGCAT chr22:40711461-40711961 + 41 4.84e-06 ttacagagac atgagtcat cgagaggcta chr4:72112443-72112943 + 69 4.84e-06 ATGTCTCACA ATGAGTCAT GTTGTGAGTC chr17:45320812-45321312 + 72 4.84e-06 AAAGTGGCTG ATGAGTCAT CTGAATGTGG chr17:67978504-67979004 - 55 4.84e-06 TATCTAATGT ATGAGTCAT TTTCTTGCTC chr3:124429015-124429515 + 77 4.84e-06 ACAATAAGGC ATGAGTCAT TTTTTGCCCA chr19:38543936-38544436 + 43 4.84e-06 TTTCTCTCTG ATGAGTCAT CGCAGATGTG chr6:25173814-25174314 + 50 4.84e-06 CACTTCTAGA ATGAGTCAT CTGGAATTAG chr12:95103155-95103655 + 57 4.84e-06 ATGTATTTTT ATGAGTCAT AGAGTTTCAG chr22:46528127-46528627 - 61 4.84e-06 TGATTGGCGG ATGAGTCAT TCAGGCATGT chr9:86732478-86732978 + 49 4.84e-06 CTGATCATCC ATGAGTCAT TTTTTGGCTC chr18:5518828-5519328 - 70 4.84e-06 AAAGCTTAGG ATGAGTCAT TTTCCCTGCA chr12:65631577-65632077 - 34 4.84e-06 CCCACACACA ATGAGTCAT GTTTGTCTTC chr18:50632165-50632665 + 85 4.84e-06 TCCCTTCCAA ATGAGTCAT CCAGCAT chr18:50870160-50870660 + 33 4.84e-06 TAAAACTCAA ATGAGTCAT TTCTGTGTGC chr22:24727077-24727577 + 29 4.84e-06 AGTTTTCCAA ATGAGTCAT TTGtaattac chr5:174371533-174372033 + 60 4.84e-06 TCTTTAGAGA ATGAGTCAT TTGGTCGTTG chr6:125946217-125946717 + 70 4.84e-06 ggccaagtat atgagtcat cattttggag chr4:173252274-173252774 - 45 8.87e-06 ATACAGAAGT GTGAGTCAT GCCAGCAGCT chr6:47134622-47135122 - 37 8.87e-06 ATACCTTGGT GTGAGTCAT TTCCTGAGAA chr13:113493250-11349375 + 19 8.87e-06 TAGCAGTTGA GTGAGTCAT TAAAATAACA chr5:99900476-99900976 + 58 8.87e-06 cagccaacat gtgagtcat ggctcatgaa chr12:114914166-11491466 + 87 8.87e-06 TTATGATCCA GTGAGTCAT ATCGC chr5:1950734-1951234 + 77 8.87e-06 TCTGCTGTGC GTGAGTCAT CTGCTGTGCG chr17:1115005-1115505 - 62 8.87e-06 AGTGAGATGG GTGAGTCAT CAGCTGGGGC chr22:35364134-35364634 + 85 8.87e-06 TACATAAACA GTGAGTCAT GAATCCA chr5:124908867-124909367 + 15 8.87e-06 CTGAAACAAA GTGAGTCAT CTGGTTTTGT chr5:74632103-74632603 + 4 8.87e-06 GAG GTGAGTCAT GCATTCATAT chr1:234745747-234746247 + 1 8.87e-06 . GTGAGTCAT CCTGACTCGA chr17:933392-933892 - 29 8.87e-06 GATAAGCTGT GTGAGTCAT TTGGTGTTGC chr6:125511920-125512420 - 67 8.87e-06 GACCATGTCA GTGAGTCAT TGACTGCAGG chr2:175805463-175805963 + 41 8.87e-06 ctcaataaat gtgagtcat CCTCGTTAAC chr13:87123923-87124423 + 25 1.29e-05 ctgtaaccac atgagtcac catttataat chr1:232678509-232679009 + 10 1.29e-05 CCTGCAAAT ATGAGTCAC CCTGGTACGT chr7:157933489-157933989 + 31 1.29e-05 TAGTGGAGGG ATGAGTCAC CCTGATTGAC chr3:61894890-61895390 + 83 1.29e-05 ACTCATGCGT ATGAGTCAC TTCATAGCT chr10:33264179-33264679 - 36 1.29e-05 ACCACTCAGA ATGAGTCAC TCACCCTTGG chr3:4741586-4742086 + 71 1.29e-05 GAAGTCAGGA ATGAGTCAC TTCTGAGCGG chr10:70378092-70378592 - 80 1.29e-05 GATTACAGGC ATGAGTCAC TGCGCCCGGC chr6:89297923-89298423 + 42 1.29e-05 TGGAAGGGAG ATGAGTCAC AGGCCTGTAA chr20:25237741-25238241 - 28 1.29e-05 CAACACAAGG ATGAGTCAC CTACGACTTC chr7:150360019-150360519 - 49 1.29e-05 CTCACTGAGG ATGAGTCAC TTATTTTTGT chr5:99020167-99020667 - 5 1.29e-05 GTTTTATGTG ATGAGTCAC CACA chr7:148772489-148772989 + 72 1.29e-05 gctgtgtagc atgagtcac cctgccctca chr15:58332055-58332555 - 86 1.62e-05 GGAGTG GTGAGTCAC GCTTCGTCAC chr3:100002787-100003287 - 82 1.62e-05 ACCTCAGTAT GTGAGTCAC ACAGACATCA chr3:71982566-71983066 - 2 1.62e-05 TAGCCATAAA GTGAGTCAC G chrX:38061257-38061757 - 68 1.62e-05 TGATTAGAGA GTGAGTCAC CTTCTGACTC chr5:125485051-125485551 - 58 1.62e-05 AGCCATTCGT GTGAGTCAC GGAGTGACTT chr7:157932453-157932953 + 4 1.62e-05 GGG GTGAGTCAC TCTGATTGAC chr1:225508457-225508957 - 3 1.62e-05 CAGCCAACTA GTGAGTCAC TG chr1:234700131-234700631 - 68 2.03e-05 AATAATGCCT CTGAGTCAT CCATTAACCT chr9:1458443-1458943 + 30 2.03e-05 CACTTGGTGG CTGAGTCAT GAGGAAAAAT chr2:46481508-46482008 + 84 2.03e-05 cttcccagct ctgagtcat cctcagtt chr15:71747488-71747988 - 39 2.03e-05 TGGTTTGTTT CTGAGTCAT AAAGTTTTGC chr19:40646043-40646543 - 59 2.03e-05 CCTGACAAGC CTGAGTCAT GAATCAAACG chr17:37488137-37488637 + 45 2.03e-05 ATTTGTGTTG CTGAGTCAT TGAATTGACT chr5:90548030-90548530 + 60 2.03e-05 AAATGAATGG CTGAGTCAT TTCAGAAGGA chr1:236097023-236097523 - 12 2.36e-05 CTGCTCCATT CTGAGTCAC CCCTGGCCGC chr19:40920951-40921451 + 45 2.36e-05 AGGGTAAACA CTGAGTCAC TGTGTGTAAA chr3:190972895-190973395 + 54 2.36e-05 tcccaaattc ctgagtcac agaaactatg chr3:9976950-9977450 + 52 2.36e-05 GACACTTTAG CTGAGTCAC ATTTAAAAAC chr20:51934166-51934666 - 85 2.36e-05 TGCACCT CTGAGTCAC TTTGTATTGA chr7:152709602-152710102 - 53 2.36e-05 TGACATCAGG CTGAGTCAC ACTAGTCTGT chr13:110965219-11096571 - 9 2.76e-05 AGGGTGGAGA ATGAGTCAG GATGGAGT chr18:395626-396126 - 71 2.76e-05 AATTTTCCAA ATGAGTCAG ACGCACGCTG chr1:229893782-229894282 + 48 2.76e-05 ATAATGGGAA ATGAGTCAG AGAGAAGGGT chr20:50165944-50166444 - 55 2.76e-05 CCAAGCACGC ATGAGTCAG AAGCAGTTAT chr20:4041777-4042277 - 33 2.76e-05 ACTCCATGCT ATGAGTCAG AGCAACCAGA chr1:232704730-232705230 + 37 2.76e-05 ATGGCTGCTA ATGAGTCAG CTGCTAAGTG chr16:15590853-15591353 + 63 3.10e-05 acttgaaaca gtgagtcag atcctgttat chr8:630750-631250 - 28 3.10e-05 ATAGGAGGTT GTGAGTCAG CTCTGTCCAT chr3:58471279-58471779 + 40 3.10e-05 TGTGTGCAGA GTGAGTCAG ATGTTTGCAC chr3:14432161-14432661 - 82 3.10e-05 GAAGGAGTGG GTGAGTCAG CAGGCAGCCA chr19:4575296-4575796 + 58 3.10e-05 ACAAGTCCTG GTGAGTCAG GGCTCAGGAA chr17:3890048-3890548 - 89 3.43e-05 GTG CTGAGTCAG GCAACAGCCC chr10:68153488-68153988 + 43 3.43e-05 TAGCAAATTT CTGAGTCAG AGCCACCAGT chr13:110870167-11087066 - 32 3.43e-05 ATGACCAGCG CTGAGTCAG TCTAGGAGCA chr5:174503744-174504244 - 32 3.43e-05 TTACGCAAGA CTGAGTCAG CCGAGCAATT chr5:34608739-34609239 + 60 3.43e-05 TGGCCAATTA CTGAGTCAG CCACACACTT chr4:31089744-31090244 - 66 3.43e-05 TACACGACAT CTGAGTCAG GTGTTTCTTA chr5:125277458-125277958 - 61 3.43e-05 ACCTTCAGGG CTGAGTCAG ATGTGATTAG chr10:3220724-3221224 - 65 3.92e-05 TCTGATTGAC ATGAGTCAA TCCCTGTGAT chr21:34845662-34846162 + 36 3.92e-05 GTAACACAGA ATGAGTCAA ACAGTATTAA chr1:228903003-228903503 + 24 3.92e-05 CCCAATCCTC ATGAGTCAA CCAGAGAGCT chr7:51606678-51607178 - 33 3.92e-05 TTTAATAGGA ATGAGTCAA TACTCATAAA chr1:235917404-235917904 - 35 3.92e-05 CATCAAATGA ATGAGTCAA TGTGGGCTTG chr6:112231662-112232162 + 77 3.92e-05 CATGTGTTTT ATGAGTCAA ATTTTATGAG chr1:237873395-237873895 - 88 3.92e-05 TTCC ATGAGTCAA CCCTTTTTGC chr12:117125729-11712622 - 59 4.40e-05 GTCAGGACAG ATGAGTGAT GTGACATGAT chr17:44820577-44821077 + 60 4.40e-05 TTAATTCCAC ATGAGTGAT AATAGATGTT chr9:127388304-127388804 - 73 4.40e-05 TGCAATAAAG ATGAGTGAT GTGGTAAGAA chr5:69521094-69521594 + 23 5.39e-05 tgagtatacg atgattcat tctcctattt chr17:68381052-68381552 - 35 5.39e-05 CAACAAAACC ATGATTCAT GAATTTGCTT chr4:118327827-118328327 - 15 5.39e-05 GTCTCAATTT ATGATTCAT TCTTAAGCAA chr10:29646400-29646900 - 80 5.39e-05 CAGTGTCATG ATGATTCAT ACTTCTTCCT chr17:57541792-57542292 + 32 5.39e-05 TGGTTCATGG ATGATTCAT GACTCTGCTT chr10:4663058-4663558 - 20 5.39e-05 CGTGTTCTGC ATGATTCAT GCAACTGCTA chr4:156931253-156931753 + 34 5.39e-05 TGTGGGGGAG GTGAGTCAA CAGTGATTCT chr6:21748569-21749069 - 89 5.39e-05 TTA GTGAGTCAA TAAAATAAAA chr7:105024683-105025183 + 24 5.39e-05 CCAGTTCAAG ATGATTCAT TGGTTTCCAG chr11:9565981-9566481 - 92 5.39e-05 . GTGAGTCAA GGGGCCGTGT chr3:171801840-171802340 - 2 5.39e-05 TTTTATGACA ATGATTCAT T chr2:234880375-234880875 - 13 5.39e-05 TACATCAGCT ATGATTCAT TCCTGTGATC chr9:85743180-85743680 + 58 6.37e-05 TGCCACAAGA GTGAGTGAT TTATGTTTTG chr6:142323331-142323831 + 18 6.37e-05 gtctcataag attagtcat gcattgctta chr18:75212354-75212854 - 87 6.37e-05 CCATG GTGAGTGAT TTATTGATGT chr7:151709611-151710111 + 19 6.37e-05 GTGTGATGCT GTGAGTGAT GTGTGACATT chr4:53943641-53944141 - 17 6.37e-05 TGACAGCTTC ATTAGTCAT GACTAGGTAA chr5:136123154-136123654 + 79 6.37e-05 CCACAGAAGC ATTAGTCAT TATACAAATA chr10:1498784-1499284 - 6 6.37e-05 TGAGTATTGA GTGAGTGAT TAGTG chr2:212135625-212136125 + 36 6.37e-05 GGCTTGCCAA ATTAGTCAT CTGCCATCTG chr17:76586761-76587261 + 45 6.37e-05 CTCCCTGGCA GTGAGTGAT GGATGAGATG chr10:1499589-1500089 - 22 6.37e-05 TAAGTGATGA GTGAGTGAT GTGTGAGTAA chr16:87388430-87388930 + 1 7.74e-05 . GTGATTCAT TTGACAGGTT chr14:34700080-34700580 + 60 7.74e-05 TGTTTCCAGA GTGATTCAT AGTAGCCAGG chr21:29217695-29218195 - 47 7.74e-05 AGGCGCATAA ATGTGTCAT CAATATGATG chr6:134109467-134109967 + 57 7.74e-05 gttaagagaa atgtgtcat taggcgattt chr1:68384309-68384809 + 73 7.74e-05 GAACTGGAAA GTGATTCAT CTCCTTTATG chr17:66502768-66503268 + 39 7.74e-05 AGCTGTTTTT ATGTGTCAT CCATAAAATA chr1:184930614-184931114 - 20 7.74e-05 ATGTACACTA ATGTGTCAT AAAACCATAA chr10:7525176-7525676 + 10 7.74e-05 GTGATCTTC ATGAGTGAC AGCTGTCTTT chr12:104060776-10406127 + 24 7.74e-05 agagactgga gtgattcat tgacaagtca chr7:100101249-100101749 + 61 7.74e-05 CGGGCCTAGA ATGAGTGAC GGGGAGGCGG chr10:5548802-5549302 + 83 7.74e-05 TTCACTCTAA GTGATTCAT CGAGGGCGT chr7:123643757-123644257 - 66 7.74e-05 CCCTTGAAGA ATGTGTCAT CATCTGCTTT chr5:175378418-175378918 + 58 8.71e-05 agttccaCTG GTTAGTCAT AGTCCATAAA chr5:14156506-14157006 + 83 8.71e-05 TGCCTTGTCA GTTAGTCAT CCAAACAAA chr4:119730088-119730588 - 80 8.71e-05 AAGTGGAAAA ATGATTCAC AAACATTGTT chr19:28863910-28864410 + 76 8.71e-05 aaggcagcac atgattcac tgctatgagg chr22:29621997-29622497 - 65 8.71e-05 AGCACGGATC GTTAGTCAT GTCATTCATC chr9:133977341-133977841 - 82 1.03e-04 GAGGTGCCAG GTGAGTGAC AGCTGTCGTG chr5:124655908-124656408 + 23 1.03e-04 CAGTGCTGCG ATTAGTCAC CCTGAACATA chr22:25930708-25931208 + 69 1.03e-04 ATTTATCACC GTGTGTCAT CCATGCTTCC chr15:36951756-36952256 - 38 1.03e-04 AGGAATGAGT GTGAGTGAC CAAAGCAGCC chr12:68808685-68809185 - 13 1.03e-04 AGAGGAAAAG CTGAGTCAA CCTGCCCACT chr11:65421163-65421663 - 5 1.03e-04 ACTGGTGACT GTGTGTCAT CTGA chrX:14039338-14039838 - 53 1.15e-04 TGTGACTGAC ATGTGTCAC TACAGCCTAT chr17:71438649-71439149 + 58 1.15e-04 GTGTCTCGCC ATGTGTCAC ATTCTTGACT chr16:2799729-2800229 + 52 1.15e-04 GCCTAcagtc atgtgtcac ttaatgaccg chr15:67720444-67720944 - 62 1.15e-04 GTTATGGTCA CTGAGTGAT TGATAGCGCT chr13:106096580-10609708 - 19 1.15e-04 CAAAGTAAAT ATGTGTCAC CAGGAAATAG chr7:80883476-80883976 + 48 1.15e-04 CAGCTTTACA GTGATTCAC TGCCCTTTGG chr3:9141215-9141715 + 11 1.15e-04 CTACATCAGG CTGAGTGAT TTATGTTTCT chr21:29075686-29076186 - 42 1.15e-04 ATAAGTGCTG GTGATTCAC CACCTACCTG chr12:117128158-11712865 + 45 1.24e-04 cacctgtcaa gttagtcac ctgtcacctg chr10:7311286-7311786 - 14 1.24e-04 ACCCAAGTGG GTTAGTCAC TCTTGGATGA chr12:12779468-12779968 - 31 1.33e-04 CCATTGTTTG CTTAGTCAT TTCCCTGTTA chr4:144356274-144356774 + 54 1.33e-04 AGCCGCAGAG CTTAGTCAT AGCAGACATT chr8:6648874-6649374 - 7 1.33e-04 CTGTTCTATC CTTAGTCAT CCTTAG chr6:100464761-100465261 + 88 1.40e-04 GCCAATAGGG CTGAGTGAC ACGA chr19:37655845-37656345 + 45 1.40e-04 GTGGTGTTTG CTGAGTGAC GGCCGCCGCG chr20:53899462-53899962 - 83 1.57e-04 AGGTGATGA CTTAGTCAC CCTGGCTCTG chr20:44728721-44729221 + 81 1.57e-04 aatgagagga cttagtcac ccatctgaga chr19:32373726-32374226 + 40 1.57e-04 gaaaggcttg cttagtcac tgggcatgat chr10:117461665-11746216 + 79 1.57e-04 GACTTTCAAG CTTAGTCAC TGCTTAAGTC chr7:101880999-101881499 - 41 1.57e-04 TGCTTGTCAG CTGAATCAT GTGTTATTAA chr1:81032864-81033364 + 90 1.68e-04 TACAATTACT CTGTGTCAC CA chr3:194134798-194135298 - 48 1.68e-04 GCGTGCGTGT GTGAGTGAG TGTGTGTGCG chr1:81126899-81127399 + 33 1.68e-04 GTGATAAGGC CTGTGTCAC AGTAAGTCAG chr8:10652884-10653384 - 35 1.68e-04 TGTCATATAA ATTAGTCAG TAAATCAATC chr6:149233294-149233794 - 50 1.76e-04 TTACATGTTG GTGATTCAG GGATAAAAAA chr5:10606924-10607424 - 2 1.76e-04 TCATCTATTC ATGTGTCAG G chr5:17379027-17379527 - 61 1.76e-04 ATTAGTGGTA GTGATTCAG TTTGGAGAAG chr6:52482907-52483407 - 74 1.90e-04 GTTAATAACT ATGAGTAAT TGCATAAAGT chr17:32015546-32016046 + 78 1.90e-04 CCAGGGGGGC ATGAGTAAT TGCCTGTAAT chr6:150418471-150418971 - 18 1.90e-04 GACGTTGGAG ATGAGTAAT TTCCCTCTCT chr14:68140172-68140672 - 15 1.90e-04 CAAGGGAAGT GTGTGTCAG TGACTTTCAG chr5:108765629-108766129 + 16 1.90e-04 AGAAAGCTGT ATGAGTAAT ACTGTTTACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAGTCAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:95535180-95535680 4.8e-06 16_[-1]_75 chr10:63707208-63707708 4.8e-06 32_[+1]_59 chr22:40711461-40711961 4.8e-06 40_[+1]_51 chr4:72112443-72112943 4.8e-06 68_[+1]_23 chr17:45320812-45321312 4.8e-06 71_[+1]_20 chr17:67978504-67979004 4.8e-06 54_[-1]_37 chr3:124429015-124429515 4.8e-06 76_[+1]_15 chr19:38543936-38544436 4.8e-06 42_[+1]_49 chr6:25173814-25174314 4.8e-06 49_[+1]_42 chr12:95103155-95103655 4.8e-06 56_[+1]_35 chr22:46528127-46528627 4.8e-06 60_[-1]_31 chr9:86732478-86732978 4.8e-06 48_[+1]_43 chr18:5518828-5519328 4.8e-06 69_[-1]_22 chr12:65631577-65632077 4.8e-06 33_[-1]_58 chr18:50632165-50632665 4.8e-06 84_[+1]_7 chr18:50870160-50870660 4.8e-06 32_[+1]_59 chr22:24727077-24727577 4.8e-06 28_[+1]_63 chr5:174371533-174372033 4.8e-06 59_[+1]_32 chr6:125946217-125946717 4.8e-06 69_[+1]_22 chr4:173252274-173252774 8.9e-06 44_[-1]_47 chr6:47134622-47135122 8.9e-06 36_[-1]_55 chr13:113493250-11349375 8.9e-06 18_[+1]_73 chr5:99900476-99900976 8.9e-06 57_[+1]_34 chr12:114914166-11491466 8.9e-06 86_[+1]_5 chr5:1950734-1951234 8.9e-06 76_[+1]_15 chr17:1115005-1115505 8.9e-06 61_[-1]_30 chr22:35364134-35364634 8.9e-06 84_[+1]_7 chr5:124908867-124909367 8.9e-06 14_[+1]_77 chr5:74632103-74632603 8.9e-06 3_[+1]_88 chr1:234745747-234746247 8.9e-06 [+1]_91 chr17:933392-933892 8.9e-06 28_[-1]_63 chr6:125511920-125512420 8.9e-06 66_[-1]_25 chr2:175805463-175805963 8.9e-06 40_[+1]_51 chr13:87123923-87124423 1.3e-05 24_[+1]_67 chr1:232678509-232679009 1.3e-05 9_[+1]_82 chr7:157933489-157933989 1.3e-05 30_[+1]_61 chr3:61894890-61895390 1.3e-05 82_[+1]_9 chr10:33264179-33264679 1.3e-05 35_[-1]_56 chr3:4741586-4742086 1.3e-05 70_[+1]_21 chr10:70378092-70378592 1.3e-05 79_[-1]_12 chr6:89297923-89298423 1.3e-05 41_[+1]_50 chr20:25237741-25238241 1.3e-05 27_[-1]_64 chr7:150360019-150360519 1.3e-05 48_[-1]_43 chr5:99020167-99020667 1.3e-05 4_[-1]_87 chr7:148772489-148772989 1.3e-05 71_[+1]_20 chr15:58332055-58332555 1.6e-05 85_[-1]_6 chr3:100002787-100003287 1.6e-05 81_[-1]_10 chr3:71982566-71983066 1.6e-05 1_[-1]_90 chrX:38061257-38061757 1.6e-05 67_[-1]_24 chr5:125485051-125485551 1.6e-05 57_[-1]_34 chr7:157932453-157932953 1.6e-05 3_[+1]_88 chr1:225508457-225508957 1.6e-05 2_[-1]_89 chr1:234700131-234700631 2e-05 67_[-1]_24 chr9:1458443-1458943 2e-05 29_[+1]_62 chr2:46481508-46482008 2e-05 83_[+1]_8 chr15:71747488-71747988 2e-05 38_[-1]_53 chr19:40646043-40646543 2e-05 58_[-1]_33 chr17:37488137-37488637 2e-05 44_[+1]_47 chr5:90548030-90548530 2e-05 59_[+1]_32 chr1:236097023-236097523 2.4e-05 11_[-1]_80 chr19:40920951-40921451 2.4e-05 44_[+1]_47 chr3:190972895-190973395 2.4e-05 53_[+1]_38 chr3:9976950-9977450 2.4e-05 51_[+1]_40 chr20:51934166-51934666 2.4e-05 84_[-1]_7 chr7:152709602-152710102 2.4e-05 52_[-1]_39 chr13:110965219-11096571 2.8e-05 8_[-1]_83 chr18:395626-396126 2.8e-05 70_[-1]_21 chr1:229893782-229894282 2.8e-05 47_[+1]_44 chr20:50165944-50166444 2.8e-05 54_[-1]_37 chr20:4041777-4042277 2.8e-05 32_[-1]_59 chr1:232704730-232705230 2.8e-05 36_[+1]_55 chr16:15590853-15591353 3.1e-05 62_[+1]_29 chr8:630750-631250 3.1e-05 27_[-1]_64 chr3:58471279-58471779 3.1e-05 39_[+1]_52 chr3:14432161-14432661 3.1e-05 81_[-1]_10 chr19:4575296-4575796 3.1e-05 57_[+1]_34 chr17:3890048-3890548 3.4e-05 88_[-1]_3 chr10:68153488-68153988 3.4e-05 42_[+1]_49 chr13:110870167-11087066 3.4e-05 31_[-1]_60 chr5:174503744-174504244 3.4e-05 31_[-1]_60 chr5:34608739-34609239 3.4e-05 59_[+1]_32 chr4:31089744-31090244 3.4e-05 65_[-1]_26 chr5:125277458-125277958 3.4e-05 60_[-1]_31 chr10:3220724-3221224 3.9e-05 64_[-1]_27 chr21:34845662-34846162 3.9e-05 35_[+1]_56 chr1:228903003-228903503 3.9e-05 23_[+1]_68 chr7:51606678-51607178 3.9e-05 32_[-1]_59 chr1:235917404-235917904 3.9e-05 34_[-1]_57 chr6:112231662-112232162 3.9e-05 76_[+1]_15 chr1:237873395-237873895 3.9e-05 87_[-1]_4 chr12:117125729-11712622 4.4e-05 58_[-1]_33 chr17:44820577-44821077 4.4e-05 59_[+1]_32 chr9:127388304-127388804 4.4e-05 72_[-1]_19 chr5:69521094-69521594 5.4e-05 22_[+1]_69 chr17:68381052-68381552 5.4e-05 34_[-1]_57 chr4:118327827-118328327 5.4e-05 14_[-1]_77 chr10:29646400-29646900 5.4e-05 79_[-1]_12 chr17:57541792-57542292 5.4e-05 31_[+1]_60 chr10:4663058-4663558 5.4e-05 19_[-1]_72 chr4:156931253-156931753 5.4e-05 33_[+1]_58 chr6:21748569-21749069 5.4e-05 88_[-1]_3 chr7:105024683-105025183 5.4e-05 23_[+1]_68 chr11:9565981-9566481 5.4e-05 91_[-1] chr3:171801840-171802340 5.4e-05 1_[-1]_90 chr2:234880375-234880875 5.4e-05 12_[-1]_79 chr9:85743180-85743680 6.4e-05 57_[+1]_34 chr6:142323331-142323831 6.4e-05 17_[+1]_74 chr18:75212354-75212854 6.4e-05 86_[-1]_5 chr7:151709611-151710111 6.4e-05 18_[+1]_73 chr4:53943641-53944141 6.4e-05 16_[-1]_75 chr5:136123154-136123654 6.4e-05 78_[+1]_13 chr10:1498784-1499284 6.4e-05 5_[-1]_86 chr2:212135625-212136125 6.4e-05 35_[+1]_56 chr17:76586761-76587261 6.4e-05 44_[+1]_47 chr10:1499589-1500089 6.4e-05 21_[-1]_70 chr16:87388430-87388930 7.7e-05 [+1]_91 chr14:34700080-34700580 7.7e-05 59_[+1]_32 chr21:29217695-29218195 7.7e-05 46_[-1]_45 chr6:134109467-134109967 7.7e-05 56_[+1]_35 chr1:68384309-68384809 7.7e-05 72_[+1]_19 chr17:66502768-66503268 7.7e-05 38_[+1]_53 chr1:184930614-184931114 7.7e-05 19_[-1]_72 chr10:7525176-7525676 7.7e-05 9_[+1]_82 chr12:104060776-10406127 7.7e-05 23_[+1]_68 chr7:100101249-100101749 7.7e-05 60_[+1]_31 chr10:5548802-5549302 7.7e-05 82_[+1]_9 chr7:123643757-123644257 7.7e-05 65_[-1]_26 chr5:175378418-175378918 8.7e-05 57_[+1]_34 chr5:14156506-14157006 8.7e-05 82_[+1]_9 chr4:119730088-119730588 8.7e-05 79_[-1]_12 chr19:28863910-28864410 8.7e-05 75_[+1]_16 chr22:29621997-29622497 8.7e-05 64_[-1]_27 chr9:133977341-133977841 0.0001 81_[-1]_10 chr5:124655908-124656408 0.0001 22_[+1]_69 chr22:25930708-25931208 0.0001 68_[+1]_23 chr15:36951756-36952256 0.0001 37_[-1]_54 chr12:68808685-68809185 0.0001 12_[-1]_79 chr11:65421163-65421663 0.0001 4_[-1]_87 chrX:14039338-14039838 0.00012 52_[-1]_39 chr17:71438649-71439149 0.00012 57_[+1]_34 chr16:2799729-2800229 0.00012 51_[+1]_40 chr15:67720444-67720944 0.00012 61_[-1]_30 chr13:106096580-10609708 0.00012 18_[-1]_73 chr7:80883476-80883976 0.00012 47_[+1]_44 chr3:9141215-9141715 0.00012 10_[+1]_81 chr21:29075686-29076186 0.00012 41_[-1]_50 chr12:117128158-11712865 0.00012 44_[+1]_47 chr10:7311286-7311786 0.00012 13_[-1]_78 chr12:12779468-12779968 0.00013 30_[-1]_61 chr4:144356274-144356774 0.00013 53_[+1]_38 chr8:6648874-6649374 0.00013 6_[-1]_85 chr6:100464761-100465261 0.00014 87_[+1]_4 chr19:37655845-37656345 0.00014 44_[+1]_47 chr20:53899462-53899962 0.00016 82_[-1]_9 chr20:44728721-44729221 0.00016 80_[+1]_11 chr19:32373726-32374226 0.00016 39_[+1]_52 chr10:117461665-11746216 0.00016 78_[+1]_13 chr7:101880999-101881499 0.00016 40_[-1]_51 chr1:81032864-81033364 0.00017 89_[+1]_2 chr3:194134798-194135298 0.00017 47_[-1]_44 chr1:81126899-81127399 0.00017 32_[+1]_59 chr8:10652884-10653384 0.00017 34_[-1]_57 chr6:149233294-149233794 0.00018 49_[-1]_42 chr5:10606924-10607424 0.00018 1_[-1]_90 chr5:17379027-17379527 0.00018 60_[-1]_31 chr6:52482907-52483407 0.00019 73_[-1]_18 chr17:32015546-32016046 0.00019 77_[+1]_14 chr6:150418471-150418971 0.00019 17_[-1]_74 chr14:68140172-68140672 0.00019 14_[-1]_77 chr5:108765629-108766129 0.00019 15_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAGTCAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGAGTCAY width=9 seqs=170 chr13:95535180-95535680 ( 17) ATGAGTCAT 1 chr10:63707208-63707708 ( 33) ATGAGTCAT 1 chr22:40711461-40711961 ( 41) ATGAGTCAT 1 chr4:72112443-72112943 ( 69) ATGAGTCAT 1 chr17:45320812-45321312 ( 72) ATGAGTCAT 1 chr17:67978504-67979004 ( 55) ATGAGTCAT 1 chr3:124429015-124429515 ( 77) ATGAGTCAT 1 chr19:38543936-38544436 ( 43) ATGAGTCAT 1 chr6:25173814-25174314 ( 50) ATGAGTCAT 1 chr12:95103155-95103655 ( 57) ATGAGTCAT 1 chr22:46528127-46528627 ( 61) ATGAGTCAT 1 chr9:86732478-86732978 ( 49) ATGAGTCAT 1 chr18:5518828-5519328 ( 70) ATGAGTCAT 1 chr12:65631577-65632077 ( 34) ATGAGTCAT 1 chr18:50632165-50632665 ( 85) ATGAGTCAT 1 chr18:50870160-50870660 ( 33) ATGAGTCAT 1 chr22:24727077-24727577 ( 29) ATGAGTCAT 1 chr5:174371533-174372033 ( 60) ATGAGTCAT 1 chr6:125946217-125946717 ( 70) ATGAGTCAT 1 chr4:173252274-173252774 ( 45) GTGAGTCAT 1 chr6:47134622-47135122 ( 37) GTGAGTCAT 1 chr13:113493250-11349375 ( 19) GTGAGTCAT 1 chr5:99900476-99900976 ( 58) GTGAGTCAT 1 chr12:114914166-11491466 ( 87) GTGAGTCAT 1 chr5:1950734-1951234 ( 77) GTGAGTCAT 1 chr17:1115005-1115505 ( 62) GTGAGTCAT 1 chr22:35364134-35364634 ( 85) GTGAGTCAT 1 chr5:124908867-124909367 ( 15) GTGAGTCAT 1 chr5:74632103-74632603 ( 4) GTGAGTCAT 1 chr1:234745747-234746247 ( 1) GTGAGTCAT 1 chr17:933392-933892 ( 29) GTGAGTCAT 1 chr6:125511920-125512420 ( 67) GTGAGTCAT 1 chr2:175805463-175805963 ( 41) GTGAGTCAT 1 chr13:87123923-87124423 ( 25) ATGAGTCAC 1 chr1:232678509-232679009 ( 10) ATGAGTCAC 1 chr7:157933489-157933989 ( 31) ATGAGTCAC 1 chr3:61894890-61895390 ( 83) ATGAGTCAC 1 chr10:33264179-33264679 ( 36) ATGAGTCAC 1 chr3:4741586-4742086 ( 71) ATGAGTCAC 1 chr10:70378092-70378592 ( 80) ATGAGTCAC 1 chr6:89297923-89298423 ( 42) ATGAGTCAC 1 chr20:25237741-25238241 ( 28) ATGAGTCAC 1 chr7:150360019-150360519 ( 49) ATGAGTCAC 1 chr5:99020167-99020667 ( 5) ATGAGTCAC 1 chr7:148772489-148772989 ( 72) ATGAGTCAC 1 chr15:58332055-58332555 ( 86) GTGAGTCAC 1 chr3:100002787-100003287 ( 82) GTGAGTCAC 1 chr3:71982566-71983066 ( 2) GTGAGTCAC 1 chrX:38061257-38061757 ( 68) GTGAGTCAC 1 chr5:125485051-125485551 ( 58) GTGAGTCAC 1 chr7:157932453-157932953 ( 4) GTGAGTCAC 1 chr1:225508457-225508957 ( 3) GTGAGTCAC 1 chr1:234700131-234700631 ( 68) CTGAGTCAT 1 chr9:1458443-1458943 ( 30) CTGAGTCAT 1 chr2:46481508-46482008 ( 84) CTGAGTCAT 1 chr15:71747488-71747988 ( 39) CTGAGTCAT 1 chr19:40646043-40646543 ( 59) CTGAGTCAT 1 chr17:37488137-37488637 ( 45) CTGAGTCAT 1 chr5:90548030-90548530 ( 60) CTGAGTCAT 1 chr1:236097023-236097523 ( 12) CTGAGTCAC 1 chr19:40920951-40921451 ( 45) CTGAGTCAC 1 chr3:190972895-190973395 ( 54) CTGAGTCAC 1 chr3:9976950-9977450 ( 52) CTGAGTCAC 1 chr20:51934166-51934666 ( 85) CTGAGTCAC 1 chr7:152709602-152710102 ( 53) CTGAGTCAC 1 chr13:110965219-11096571 ( 9) ATGAGTCAG 1 chr18:395626-396126 ( 71) ATGAGTCAG 1 chr1:229893782-229894282 ( 48) ATGAGTCAG 1 chr20:50165944-50166444 ( 55) ATGAGTCAG 1 chr20:4041777-4042277 ( 33) ATGAGTCAG 1 chr1:232704730-232705230 ( 37) ATGAGTCAG 1 chr16:15590853-15591353 ( 63) GTGAGTCAG 1 chr8:630750-631250 ( 28) GTGAGTCAG 1 chr3:58471279-58471779 ( 40) GTGAGTCAG 1 chr3:14432161-14432661 ( 82) GTGAGTCAG 1 chr19:4575296-4575796 ( 58) GTGAGTCAG 1 chr17:3890048-3890548 ( 89) CTGAGTCAG 1 chr10:68153488-68153988 ( 43) CTGAGTCAG 1 chr13:110870167-11087066 ( 32) CTGAGTCAG 1 chr5:174503744-174504244 ( 32) CTGAGTCAG 1 chr5:34608739-34609239 ( 60) CTGAGTCAG 1 chr4:31089744-31090244 ( 66) CTGAGTCAG 1 chr5:125277458-125277958 ( 61) CTGAGTCAG 1 chr10:3220724-3221224 ( 65) ATGAGTCAA 1 chr21:34845662-34846162 ( 36) ATGAGTCAA 1 chr1:228903003-228903503 ( 24) ATGAGTCAA 1 chr7:51606678-51607178 ( 33) ATGAGTCAA 1 chr1:235917404-235917904 ( 35) ATGAGTCAA 1 chr6:112231662-112232162 ( 77) ATGAGTCAA 1 chr1:237873395-237873895 ( 88) ATGAGTCAA 1 chr12:117125729-11712622 ( 59) ATGAGTGAT 1 chr17:44820577-44821077 ( 60) ATGAGTGAT 1 chr9:127388304-127388804 ( 73) ATGAGTGAT 1 chr5:69521094-69521594 ( 23) ATGATTCAT 1 chr17:68381052-68381552 ( 35) ATGATTCAT 1 chr4:118327827-118328327 ( 15) ATGATTCAT 1 chr10:29646400-29646900 ( 80) ATGATTCAT 1 chr17:57541792-57542292 ( 32) ATGATTCAT 1 chr10:4663058-4663558 ( 20) ATGATTCAT 1 chr4:156931253-156931753 ( 34) GTGAGTCAA 1 chr6:21748569-21749069 ( 89) GTGAGTCAA 1 chr7:105024683-105025183 ( 24) ATGATTCAT 1 chr11:9565981-9566481 ( 92) GTGAGTCAA 1 chr3:171801840-171802340 ( 2) ATGATTCAT 1 chr2:234880375-234880875 ( 13) ATGATTCAT 1 chr9:85743180-85743680 ( 58) GTGAGTGAT 1 chr6:142323331-142323831 ( 18) ATTAGTCAT 1 chr18:75212354-75212854 ( 87) GTGAGTGAT 1 chr7:151709611-151710111 ( 19) GTGAGTGAT 1 chr4:53943641-53944141 ( 17) ATTAGTCAT 1 chr5:136123154-136123654 ( 79) ATTAGTCAT 1 chr10:1498784-1499284 ( 6) GTGAGTGAT 1 chr2:212135625-212136125 ( 36) ATTAGTCAT 1 chr17:76586761-76587261 ( 45) GTGAGTGAT 1 chr10:1499589-1500089 ( 22) GTGAGTGAT 1 chr16:87388430-87388930 ( 1) GTGATTCAT 1 chr14:34700080-34700580 ( 60) GTGATTCAT 1 chr21:29217695-29218195 ( 47) ATGTGTCAT 1 chr6:134109467-134109967 ( 57) ATGTGTCAT 1 chr1:68384309-68384809 ( 73) GTGATTCAT 1 chr17:66502768-66503268 ( 39) ATGTGTCAT 1 chr1:184930614-184931114 ( 20) ATGTGTCAT 1 chr10:7525176-7525676 ( 10) ATGAGTGAC 1 chr12:104060776-10406127 ( 24) GTGATTCAT 1 chr7:100101249-100101749 ( 61) ATGAGTGAC 1 chr10:5548802-5549302 ( 83) GTGATTCAT 1 chr7:123643757-123644257 ( 66) ATGTGTCAT 1 chr5:175378418-175378918 ( 58) GTTAGTCAT 1 chr5:14156506-14157006 ( 83) GTTAGTCAT 1 chr4:119730088-119730588 ( 80) ATGATTCAC 1 chr19:28863910-28864410 ( 76) ATGATTCAC 1 chr22:29621997-29622497 ( 65) GTTAGTCAT 1 chr9:133977341-133977841 ( 82) GTGAGTGAC 1 chr5:124655908-124656408 ( 23) ATTAGTCAC 1 chr22:25930708-25931208 ( 69) GTGTGTCAT 1 chr15:36951756-36952256 ( 38) GTGAGTGAC 1 chr12:68808685-68809185 ( 13) CTGAGTCAA 1 chr11:65421163-65421663 ( 5) GTGTGTCAT 1 chrX:14039338-14039838 ( 53) ATGTGTCAC 1 chr17:71438649-71439149 ( 58) ATGTGTCAC 1 chr16:2799729-2800229 ( 52) ATGTGTCAC 1 chr15:67720444-67720944 ( 62) CTGAGTGAT 1 chr13:106096580-10609708 ( 19) ATGTGTCAC 1 chr7:80883476-80883976 ( 48) GTGATTCAC 1 chr3:9141215-9141715 ( 11) CTGAGTGAT 1 chr21:29075686-29076186 ( 42) GTGATTCAC 1 chr12:117128158-11712865 ( 45) GTTAGTCAC 1 chr10:7311286-7311786 ( 14) GTTAGTCAC 1 chr12:12779468-12779968 ( 31) CTTAGTCAT 1 chr4:144356274-144356774 ( 54) CTTAGTCAT 1 chr8:6648874-6649374 ( 7) CTTAGTCAT 1 chr6:100464761-100465261 ( 88) CTGAGTGAC 1 chr19:37655845-37656345 ( 45) CTGAGTGAC 1 chr20:53899462-53899962 ( 83) CTTAGTCAC 1 chr20:44728721-44729221 ( 81) CTTAGTCAC 1 chr19:32373726-32374226 ( 40) CTTAGTCAC 1 chr10:117461665-11746216 ( 79) CTTAGTCAC 1 chr7:101880999-101881499 ( 41) CTGAATCAT 1 chr1:81032864-81033364 ( 90) CTGTGTCAC 1 chr3:194134798-194135298 ( 48) GTGAGTGAG 1 chr1:81126899-81127399 ( 33) CTGTGTCAC 1 chr8:10652884-10653384 ( 35) ATTAGTCAG 1 chr6:149233294-149233794 ( 50) GTGATTCAG 1 chr5:10606924-10607424 ( 2) ATGTGTCAG 1 chr5:17379027-17379527 ( 61) GTGATTCAG 1 chr6:52482907-52483407 ( 74) ATGAGTAAT 1 chr17:32015546-32016046 ( 78) ATGAGTAAT 1 chr6:150418471-150418971 ( 18) ATGAGTAAT 1 chr14:68140172-68140672 ( 15) GTGTGTCAG 1 chr5:108765629-108766129 ( 16) ATGAGTAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAGTCAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 9.85358 E= 3.0e-076 79 -14 51 -1405 -1405 -1405 -1405 187 -1405 -1405 198 -137 174 -1405 -1405 -163 -553 -1405 195 -121 -1405 -1405 -1405 187 -354 194 -110 -1405 187 -1405 -1405 -1405 -208 31 -69 91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAGTCAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 170 E= 3.0e-076 0.470588 0.205882 0.323529 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.894118 0.105882 0.911765 0.000000 0.000000 0.088235 0.005882 0.000000 0.876471 0.117647 0.000000 0.000000 0.000000 1.000000 0.023529 0.870588 0.105882 0.000000 1.000000 0.000000 0.000000 0.000000 0.064706 0.282353 0.141176 0.511765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAGTCAY MEME-1 regular expression -------------------------------------------------------------------------------- [AGC]TGAGTCA[TC] -------------------------------------------------------------------------------- Time 397.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGTGTGTGTGTGTGTGT MEME-2 width = 22 sites = 16 llr = 360 E-value = 1.7e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::11:::::::12::1::1::1 pos.-specific C 2:1:::::::1:111:12:::: probability G 828:9:a1a181619:919:a1 matrix T :8:91a:9:91918:918:a:9 bits 2.1 * * * 1.9 ** * ** 1.7 *** * * ** 1.5 * ***** *** *** Relative 1.3 ** ********* *** **** Entropy 1.1 ************ **** **** (32.5 bits) 0.9 ************ ********* 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GTGTGTGTGTGTGTGTGTGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr10:101442021-10144252 + 77 5.18e-14 ctgtgtgtat gtgtgtgtgtgtgtgtgtgtgt AA chr15:40092244-40092744 - 11 5.18e-14 GCGCACAAGG GTGTGTGTGTGTGTGTGTGTGT GAGTCTGTGT chr20:53611331-53611831 - 52 5.18e-14 GCCAGAGGTG GTGTGTGTGTGTGTGTGTGTGT TTTTAAATGG chr6:111568258-111568758 + 1 5.18e-14 . gtgtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr1:167162907-167163407 - 46 5.18e-14 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGT TTTTGGTAGC chr19:35947356-35947856 + 42 5.18e-14 GGCACTGTTC gtgtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr5:93582567-93583067 + 7 2.00e-13 GTAAgt gtgtgtgtgtgtatgtgtgtgt gtgtgtgACC chr20:52972202-52972702 + 23 5.04e-13 gtgcgagggt gtgtgtgtgtgtttgtgtgtgt gtgcatatgt chr8:16825873-16826373 - 14 7.10e-12 TTTTTAATGT GTGTGTGTGTGTATGTCTGTGT GTGTGTGTGT chr5:10606924-10607424 - 35 1.43e-11 ACAGTCTATT CTGAGTGTGTGTGTGTGCGTGT AACAGTAGCA chr3:194134798-194135298 - 57 6.56e-11 CGGGCCGGGA GGATGTGTGTGTGCGTGCGTGT GTGAGTGAGT chr16:12120425-12120925 + 34 1.17e-09 TGCGTCATCT GGCTGTGTGTCTGTGTTTATGT TTGGGTCCCT chr22:42964917-42965417 + 73 3.66e-09 atagcaccca ctgtgtgtgtctatgtggatga aattcg chr7:150360019-150360519 - 2 3.66e-09 TGTGGTGTTT GTGTGTGTGGTGGGCTGTGTGT G chr12:121719941-12172044 - 77 1.18e-08 CG GTAAGTGGGGGTCTGTGCGTGG GAGGCACGCA chr1:155127056-155127556 - 6 3.23e-08 TAAAGTGCAA CGCTTTGTGTGATCGAGTGTGT AACGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:101442021-10144252 5.2e-14 76_[+2]_2 chr15:40092244-40092744 5.2e-14 10_[-2]_68 chr20:53611331-53611831 5.2e-14 51_[-2]_27 chr6:111568258-111568758 5.2e-14 [+2]_78 chr1:167162907-167163407 5.2e-14 45_[-2]_33 chr19:35947356-35947856 5.2e-14 41_[+2]_37 chr5:93582567-93583067 2e-13 6_[+2]_72 chr20:52972202-52972702 5e-13 22_[+2]_56 chr8:16825873-16826373 7.1e-12 13_[-2]_65 chr5:10606924-10607424 1.4e-11 34_[-2]_44 chr3:194134798-194135298 6.6e-11 56_[-2]_22 chr16:12120425-12120925 1.2e-09 33_[+2]_45 chr22:42964917-42965417 3.7e-09 72_[+2]_6 chr7:150360019-150360519 3.7e-09 1_[-2]_77 chr12:121719941-12172044 1.2e-08 76_[-2]_2 chr1:155127056-155127556 3.2e-08 5_[-2]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGTGTGTGTGTGTGTGT width=22 seqs=16 chr10:101442021-10144252 ( 77) GTGTGTGTGTGTGTGTGTGTGT 1 chr15:40092244-40092744 ( 11) GTGTGTGTGTGTGTGTGTGTGT 1 chr20:53611331-53611831 ( 52) GTGTGTGTGTGTGTGTGTGTGT 1 chr6:111568258-111568758 ( 1) GTGTGTGTGTGTGTGTGTGTGT 1 chr1:167162907-167163407 ( 46) GTGTGTGTGTGTGTGTGTGTGT 1 chr19:35947356-35947856 ( 42) GTGTGTGTGTGTGTGTGTGTGT 1 chr5:93582567-93583067 ( 7) GTGTGTGTGTGTATGTGTGTGT 1 chr20:52972202-52972702 ( 23) GTGTGTGTGTGTTTGTGTGTGT 1 chr8:16825873-16826373 ( 14) GTGTGTGTGTGTATGTCTGTGT 1 chr5:10606924-10607424 ( 35) CTGAGTGTGTGTGTGTGCGTGT 1 chr3:194134798-194135298 ( 57) GGATGTGTGTGTGCGTGCGTGT 1 chr16:12120425-12120925 ( 34) GGCTGTGTGTCTGTGTTTATGT 1 chr22:42964917-42965417 ( 73) CTGTGTGTGTCTATGTGGATGA 1 chr7:150360019-150360519 ( 2) GTGTGTGTGGTGGGCTGTGTGT 1 chr12:121719941-12172044 ( 77) GTAAGTGGGGGTCTGTGCGTGG 1 chr1:155127056-155127556 ( 6) CGCTTTGTGTGATCGAGTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.5321 E= 1.7e-047 -1064 -28 184 -1064 -1064 -1064 -28 157 -113 -86 172 -1064 -113 -1064 -1064 168 -1064 -1064 205 -212 -1064 -1064 -1064 187 -1064 -1064 214 -1064 -1064 -1064 -186 178 -1064 -1064 214 -1064 -1064 -1064 -86 168 -1064 -86 184 -212 -212 -1064 -186 168 -54 -186 146 -113 -1064 -86 -186 157 -1064 -186 205 -1064 -212 -1064 -1064 178 -1064 -186 195 -212 -1064 -28 -186 146 -113 -1064 195 -1064 -1064 -1064 -1064 187 -1064 -1064 214 -1064 -212 -1064 -186 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 16 E= 1.7e-047 0.000000 0.187500 0.812500 0.000000 0.000000 0.000000 0.187500 0.812500 0.125000 0.125000 0.750000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.125000 0.812500 0.062500 0.062500 0.000000 0.062500 0.875000 0.187500 0.062500 0.625000 0.125000 0.000000 0.125000 0.062500 0.812500 0.000000 0.062500 0.937500 0.000000 0.062500 0.000000 0.000000 0.937500 0.000000 0.062500 0.875000 0.062500 0.000000 0.187500 0.062500 0.750000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.062500 0.000000 0.062500 0.875000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGTGT MEME-2 regular expression -------------------------------------------------------------------------------- GTGTGTGTGTGTGTGTGTGTGT -------------------------------------------------------------------------------- Time 735.89 secs. ******************************************************************************** ******************************************************************************** MOTIF SATGACRTCAYY MEME-3 width = 12 sites = 116 llr = 1044 E-value = 1.1e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif SATGACRTCAYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 28::9:5:29:1 pos.-specific C 3::::8218:45 probability G 42:8:13:::1: matrix T 1:a211:9::43 bits 2.1 1.9 1.7 * 1.5 * * *** Relative 1.3 ***** *** Entropy 1.1 ***** *** (13.0 bits) 0.9 ***** *** 0.6 ***** *** 0.4 *********** 0.2 ************ 0.0 ------------ Multilevel GATGACATCACC consensus C T G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATGACRTCAYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:78558309-78558809 + 3 5.66e-08 TG GATGACATCACC CTCATGGGTG chr17:74514037-74514537 - 71 1.13e-07 ACCACCCCCA CATGACATCACC CATTACATAT chr1:3992053-3992553 - 56 1.13e-07 ATCACCTCTC CATGACATCACC CCTCCATGAC chr16:19102301-19102801 + 64 1.13e-07 AAATTCTCAC CATGACATCACC AGACAATGTC chr5:158451510-158452010 - 89 2.28e-07 . GATGACATCATC GGCTTTGGCA chr17:7931968-7932468 - 2 2.28e-07 CTCTCGCCTC GATGACGTCACC C chrX:41084525-41085025 - 55 2.28e-07 GAACCCGGAT GATGACGTCACC GGCCTCCCCC chr9:97921992-97922492 + 37 4.00e-07 GAACAAGCCA GATGACGTCATC CCGCTCGCCA chr15:70494068-70494568 - 83 1.01e-06 GATAGT GATGACCTCATC CCGGGTTGTC chr18:3966565-3967065 + 77 1.01e-06 aacagatttg gatgacatcagc atgttgatgt chr9:86741394-86741894 - 63 1.40e-06 TCACTCTTAC CATGACGTCACT TTGAAAGGTG chr14:68140172-68140672 - 41 1.40e-06 CCTGGTTTTC CATGACATCAGC AGCATTCCAA chr5:168317634-168318134 - 65 1.40e-06 CCAGGATTTT CATGACGTCACT GGGCTATTGC chr3:9141215-9141715 + 52 1.40e-06 AGTTATTACC CATGACCTCATC CTGGCAACTT chr17:51046568-51047068 + 49 1.51e-06 GCTCCCAAGC GATGACGTCATT CCGTTCTCCC chr17:5526721-5527221 - 70 1.75e-06 CCCTGGAAAC GATGACCTCACT GCCTGACACA chr1:159916140-159916640 + 32 2.07e-06 ttttctctgc aatgacatcact ctccctgact chr8:144456660-144457160 + 41 2.07e-06 ACATCACAGA GATGACATCACA CTGGCATCAT chr17:57541792-57542292 + 66 2.73e-06 TGCCGCTGGA GGTGACATCATC TATTCGGGAC chr10:5548802-5549302 + 44 2.73e-06 TCTATCTCAG GGTGACGTCACC TCATACACAG chr1:1000621-1001121 + 51 2.73e-06 CGAGCGGGCT GGTGACGTCACC AGGCACCCGG chr5:14264585-14265085 + 15 2.73e-06 GCCCGGAGAG GGTGACGTCACC TCCCTCTGCG chr7:133492110-133492610 - 25 3.31e-06 TGTCTTAACA AATGACATCATT ACCTACCCAA chr9:77099339-77099839 - 21 3.31e-06 AGAAAACTCG AATGACATCAGC AGCAGCACTT chr15:89498160-89498660 - 32 3.31e-06 ACAAATAAAA AATGACCTCATC GCTCGTCACC chr10:85642760-85643260 + 15 4.28e-06 GCGAGCCAAC CATGACATAACC CTTCTCCAGT chr3:9976950-9977450 - 85 5.00e-06 TCAT GGTGACCTCACC CTTCTTAGGA chr3:100002787-100003287 - 14 5.66e-06 CTGCACAATC CATTACGTCATC CCTCCTCTGC chr1:81032864-81033364 + 27 5.66e-06 ACTTTTATTA CATGATATCACC AGGCTTTTAT chr6:169395992-169396492 + 31 5.66e-06 AGGGACCGAA AATGACCTCACT CTGCAGACAA chr10:129440215-12944071 + 12 6.53e-06 TCGCCTCTAC GATGACACCATC CTCCCTCTAC chr3:168974969-168975469 + 18 6.53e-06 TTCTTCATAA CATTACATCACT TCTACAGGCA chr9:17900549-17901049 - 33 6.53e-06 CACAGAAAAA AATGACATCACA AACTGTTAAG chr12:117128158-11712865 + 27 7.35e-06 ctgtcaatgc catgtcatcacc tgtcaagtta chr1:233112912-233113412 + 7 7.35e-06 CAGTTG GGTGACATCAGC TTGTCATCAC chr17:37567065-37567565 + 62 7.35e-06 gactgaatat ggtgacatcatt caccaaggaa chr17:46101204-46101704 - 5 7.35e-06 TTGCAGTTAG GATTACATCATT GTAT chr17:60173278-60173778 - 56 8.73e-06 AGTGCTGACT GATGACATCAGA CACTAGGCTA chr1:68217035-68217535 - 34 8.73e-06 GTTAACACCA CATGAGGTCACC AGGCTTCAAG chr9:129495811-129496311 - 72 9.79e-06 GTGGTCCCGG CATTACCTCATC GCGGCGCGCG chr8:18954690-18955190 - 29 9.79e-06 TCCATCCTAA CGTGACGTCACT TACAAAGTTG chr2:234880375-234880875 - 23 9.79e-06 GACATGTGTG CATTACATCAGC TATGATTCAT chr6:149704761-149705261 + 27 1.08e-05 gtagtttcct gatgacttcacc tcataaatca chr12:124720640-12472114 + 61 1.08e-05 AGGGGATTTG GATGAGCTCACC CAGCGGCAGG chr7:158097563-158098063 - 13 1.24e-05 CATTATTTCT TATGACATCATT AGAGACCATT chr5:99020167-99020667 + 87 1.24e-05 ATGGCTTTAG TATGACATCATT CT chr15:67792456-67792956 - 6 1.38e-05 GATGACATCC AATGACATAATC TTGGA chr7:116218165-116218665 - 38 1.38e-05 TTCAATGAAA CATGATATCACT TTATCATCAA chr16:72927611-72928111 + 50 1.54e-05 GGGGATACCA CATGACATAATT CGCATTAAAA chr1:229221146-229221646 + 21 1.54e-05 CCAGGCACTG GATGACTTCATC TATTTACCTT chr1:175841758-175842258 - 24 1.70e-05 ACACCTCCAT GGTGACCTCAGC CTCTAACGTA chr19:34184878-34185378 - 59 1.70e-05 TAACTCTAGA GGTTACATCATC TTCGACTGAA chr1:229230238-229230738 + 7 1.70e-05 GGCCAG AATGACACCATC CGCCTACCTC chr10:93209006-93209506 + 2 1.96e-05 T TATGACCTCACT GCTTATGATC chr17:77233781-77234281 + 19 2.13e-05 caaatacaGG GATGAGGTCAGC AAAATGAGTT chr13:41696497-41696997 - 2 2.13e-05 GTTAAATGCT GATGACATAACA T chr7:152709602-152710102 + 23 2.13e-05 ATTAGTTTAA AATGACCTCATA CTAGTGTCAC chr13:112213417-11221391 + 5 2.33e-05 aatg aatgacgccatc aaggttgaca chr14:100022752-10002325 + 28 2.33e-05 AATCCCTGCA GATGATCTCACT CCACTGAGCA chr6:16849225-16849725 - 22 2.33e-05 GCTTAGTGAG GATGACATCTTC TTTATGCTTG chr6:136403046-136403546 + 39 2.64e-05 ATCATGGTGA GATGTCGTCagc tcttgcttca chr1:8626296-8626796 - 26 2.64e-05 GGTTTATGGT CATGATGTCATT AGCCATTAGG chr3:115518407-115518907 - 80 2.64e-05 TAAATTACT GATGACCTAATT CCCAGCTGCA chr1:39183755-39184255 - 24 2.64e-05 CACCTGCTCC TGTGACATCATC CTGTCATTAT chr1:93960727-93961227 - 46 2.64e-05 TTATCTCCAA GATGACATCCCC ACAGAGCTGA chr9:14326308-14326808 - 33 2.64e-05 TCAGGTTTTT GATGACACCACA AACCACTTGA chr5:108765629-108766129 - 86 2.88e-05 AGT CATGACTTCACT TTTGACTGCT chr22:27115741-27116241 + 46 2.88e-05 acaattccag cattagatcacc caacattcct chr14:89279580-89280080 - 72 3.20e-05 CCTTGTCAGA GATGTCATCACA TTTTTAGTGC chr3:71102143-71102643 + 55 3.20e-05 ATAGTTTGCT CATGATATCACA GCTCAGTAAC chr9:127388304-127388804 + 25 3.54e-05 CCTCTGCTGT GGTTACCTCATC GCTTTGAACA chr1:61141546-61142046 - 41 3.96e-05 CATGTCAGTT AATTACATCAGT TAGCCACTAT chr1:80054123-80054623 + 60 3.96e-05 tgatcacaca catgagctcatt cttggctcgg chr12:89769160-89769660 - 28 3.96e-05 CGCACAGCAG GATTTCATCATC AAATGTCAAT chr6:1630697-1631197 + 46 3.96e-05 TAAGGTTGTC AGTGACCTCAGC ATTCCAGGCT chr6:41767097-41767597 + 44 3.96e-05 gcctgaggca agttacgtcacc tcttggcctg chr21:29217695-29218195 + 32 4.32e-05 ATTTTCCTGG AATTACATCATA TTGATGACAC chr19:33473622-33474122 - 8 4.32e-05 TCCCCACAAA CATGAGATCATA ACTGGAT chr22:29621997-29622497 + 85 4.32e-05 ATCCGTGCTA CATTACCTCAGT GTCT chr6:87095013-87095513 + 8 4.32e-05 TAATTAC CATGACGTCAAT TTTTACCATG chr5:17305899-17306399 + 23 4.72e-05 TGCTTCAGGC AATGATGTCAGC AGTTGCGTGT chr1:155127056-155127556 + 54 4.72e-05 GCATCTAGGC GATGACACAATC TCCAGAACAA chr10:68153488-68153988 - 66 6.81e-05 CTCATAGCCA CATGATACCATC CATCACTGGT chr6:37191853-37192353 - 1 6.81e-05 GCACATGATG TATGACACCACT chr20:25252755-25253255 - 17 6.81e-05 AACCACGCCT GATGTGGTCACC AAAAGGTGAC chr6:134109467-134109967 + 71 7.49e-05 gtcattaggc gatttcatcatt gtgcaaacat chr6:142323331-142323831 + 74 7.49e-05 atcgttaggt gatttcgtcact gtgcaaacat chr10:63707208-63707708 + 49 8.07e-05 CATTTTCCAG CATGATATAACT AGAATTGGTT chr17:34981750-34982250 + 35 8.07e-05 CTTGAAAGAT AACGACGTCACC GATCATaata chr1:47690395-47690895 - 84 8.07e-05 ACATG GATAACATCATC AACTCATCAC chr6:90137763-90138263 - 62 8.07e-05 TTAGAATAGT CATGATCTCATA GAGTATTAGG chr6:15735649-15736149 - 69 8.75e-05 CGTGGGAGGA AATGATGTCAGT GTGGTTTATA chr9:1458443-1458943 - 63 9.51e-05 GAATATGAAC AATGACATCTGC TGCAACACTG chr6:142885231-142885731 - 40 9.51e-05 TAGCTTTATC TGTGACCTCAGC GAATGGACAA chr1:177255361-177255861 + 2 9.51e-05 T GATTAGATCACA TCTTTGCAAA chr19:18364892-18365392 + 39 9.51e-05 GCAGGGATGA GATGACGTAAAC TTCCTCAGAT chr6:28212745-28213245 - 16 1.03e-04 CTTGTAGAAA CATGATCTAATC GTTTTTCCTG chr8:109611137-109611637 + 26 1.11e-04 CATTTGGCAC CATTACATCAAT TGGGTGCATC chr1:164611765-164612265 - 36 1.11e-04 TGAAAAATAA CATTACATCATG TTGCCTGTGT chr20:44728721-44729221 + 30 1.21e-04 ctctataatg aatgacgtcttt cactcaacat chr2:53987375-53987875 + 66 1.21e-04 gccaatacct gatgttgtcact gctttttatt chr1:9802989-9803489 + 51 1.21e-04 GGGAGGAAAG GATTAGATAACC TCTCAAGGGG chr10:22552765-22553265 - 62 1.32e-04 TTCCCTGTCA CATGAGGTAATT CTGCTGGGGT chr14:76486253-76486753 + 5 1.32e-04 CTAT AATTACATCTCC CTTTATTACC chr3:190972895-190973395 - 69 1.78e-04 AACAAATATC TATTACCTCATA GTTTCTGTGA chr11:110305510-11030601 + 34 1.78e-04 TCTAAGTTCA AATTACATAAGT ACATAATTCA chr1:221393990-221394490 - 38 1.78e-04 GAAGTGAGCC CAAGACGTCACT AGGACAGTGG chr18:48998095-48998595 + 14 1.90e-04 GGGCCCTGGA CATGATGTAACA CCCCTGGCTC chr6:125511920-125512420 + 10 1.90e-04 ccaaatggg aactacatcacc tgagagataa chr18:50870160-50870660 + 66 1.90e-04 CAGCAAATAA AATGTCATAATT GTTTCTCATT chr10:7525176-7525676 + 52 2.06e-04 GGGAAATATA GATGACGCAATA GAAAGTAGCT chr15:66886241-66886741 - 79 2.36e-04 TAACTTGCTT GATGACGCCCTC GGGGAGAAAC chr21:36909840-36910340 + 83 2.53e-04 ATGGAATTTA TATGACGCAATC CAATTC chr15:71279016-71279516 + 41 2.91e-04 TTGTACTTAA GGTTACGTAACA GCTCATAGTG chr1:153490323-153490823 - 33 3.09e-04 GATAATGTCT CGTTTCGTCATT AGGAGGGATT chr10:87845976-87846476 - 24 3.99e-04 TCTAGTCTTG CGTGACATAATG ACGTTTCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATGACRTCAYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:78558309-78558809 5.7e-08 2_[+3]_86 chr17:74514037-74514537 1.1e-07 70_[-3]_18 chr1:3992053-3992553 1.1e-07 55_[-3]_33 chr16:19102301-19102801 1.1e-07 63_[+3]_25 chr5:158451510-158452010 2.3e-07 88_[-3] chr17:7931968-7932468 2.3e-07 1_[-3]_87 chrX:41084525-41085025 2.3e-07 54_[-3]_34 chr9:97921992-97922492 4e-07 36_[+3]_52 chr15:70494068-70494568 1e-06 82_[-3]_6 chr18:3966565-3967065 1e-06 76_[+3]_12 chr9:86741394-86741894 1.4e-06 62_[-3]_26 chr14:68140172-68140672 1.4e-06 40_[-3]_48 chr5:168317634-168318134 1.4e-06 64_[-3]_24 chr3:9141215-9141715 1.4e-06 51_[+3]_37 chr17:51046568-51047068 1.5e-06 48_[+3]_40 chr17:5526721-5527221 1.8e-06 69_[-3]_19 chr1:159916140-159916640 2.1e-06 31_[+3]_57 chr8:144456660-144457160 2.1e-06 40_[+3]_48 chr17:57541792-57542292 2.7e-06 65_[+3]_23 chr10:5548802-5549302 2.7e-06 43_[+3]_45 chr1:1000621-1001121 2.7e-06 50_[+3]_38 chr5:14264585-14265085 2.7e-06 14_[+3]_74 chr7:133492110-133492610 3.3e-06 24_[-3]_64 chr9:77099339-77099839 3.3e-06 20_[-3]_68 chr15:89498160-89498660 3.3e-06 31_[-3]_57 chr10:85642760-85643260 4.3e-06 14_[+3]_74 chr3:9976950-9977450 5e-06 84_[-3]_4 chr3:100002787-100003287 5.7e-06 13_[-3]_75 chr1:81032864-81033364 5.7e-06 26_[+3]_62 chr6:169395992-169396492 5.7e-06 30_[+3]_58 chr10:129440215-12944071 6.5e-06 11_[+3]_77 chr3:168974969-168975469 6.5e-06 17_[+3]_71 chr9:17900549-17901049 6.5e-06 32_[-3]_56 chr12:117128158-11712865 7.4e-06 26_[+3]_62 chr1:233112912-233113412 7.4e-06 6_[+3]_82 chr17:37567065-37567565 7.4e-06 61_[+3]_27 chr17:46101204-46101704 7.4e-06 4_[-3]_84 chr17:60173278-60173778 8.7e-06 55_[-3]_33 chr1:68217035-68217535 8.7e-06 33_[-3]_55 chr9:129495811-129496311 9.8e-06 71_[-3]_17 chr8:18954690-18955190 9.8e-06 28_[-3]_60 chr2:234880375-234880875 9.8e-06 22_[-3]_66 chr6:149704761-149705261 1.1e-05 26_[+3]_62 chr12:124720640-12472114 1.1e-05 60_[+3]_28 chr7:158097563-158098063 1.2e-05 12_[-3]_76 chr5:99020167-99020667 1.2e-05 86_[+3]_2 chr15:67792456-67792956 1.4e-05 5_[-3]_83 chr7:116218165-116218665 1.4e-05 37_[-3]_51 chr16:72927611-72928111 1.5e-05 49_[+3]_39 chr1:229221146-229221646 1.5e-05 20_[+3]_68 chr1:175841758-175842258 1.7e-05 23_[-3]_65 chr19:34184878-34185378 1.7e-05 58_[-3]_30 chr1:229230238-229230738 1.7e-05 6_[+3]_82 chr10:93209006-93209506 2e-05 1_[+3]_87 chr17:77233781-77234281 2.1e-05 18_[+3]_70 chr13:41696497-41696997 2.1e-05 1_[-3]_87 chr7:152709602-152710102 2.1e-05 22_[+3]_66 chr13:112213417-11221391 2.3e-05 4_[+3]_84 chr14:100022752-10002325 2.3e-05 27_[+3]_61 chr6:16849225-16849725 2.3e-05 21_[-3]_67 chr6:136403046-136403546 2.6e-05 38_[+3]_50 chr1:8626296-8626796 2.6e-05 25_[-3]_63 chr3:115518407-115518907 2.6e-05 79_[-3]_9 chr1:39183755-39184255 2.6e-05 23_[-3]_65 chr1:93960727-93961227 2.6e-05 45_[-3]_43 chr9:14326308-14326808 2.6e-05 32_[-3]_56 chr5:108765629-108766129 2.9e-05 85_[-3]_3 chr22:27115741-27116241 2.9e-05 45_[+3]_43 chr14:89279580-89280080 3.2e-05 71_[-3]_17 chr3:71102143-71102643 3.2e-05 54_[+3]_34 chr9:127388304-127388804 3.5e-05 24_[+3]_64 chr1:61141546-61142046 4e-05 40_[-3]_48 chr1:80054123-80054623 4e-05 59_[+3]_29 chr12:89769160-89769660 4e-05 27_[-3]_61 chr6:1630697-1631197 4e-05 45_[+3]_43 chr6:41767097-41767597 4e-05 43_[+3]_45 chr21:29217695-29218195 4.3e-05 31_[+3]_57 chr19:33473622-33474122 4.3e-05 7_[-3]_81 chr22:29621997-29622497 4.3e-05 84_[+3]_4 chr6:87095013-87095513 4.3e-05 7_[+3]_81 chr5:17305899-17306399 4.7e-05 22_[+3]_66 chr1:155127056-155127556 4.7e-05 53_[+3]_35 chr10:68153488-68153988 6.8e-05 65_[-3]_23 chr6:37191853-37192353 6.8e-05 [-3]_88 chr20:25252755-25253255 6.8e-05 16_[-3]_72 chr6:134109467-134109967 7.5e-05 70_[+3]_18 chr6:142323331-142323831 7.5e-05 73_[+3]_15 chr10:63707208-63707708 8.1e-05 48_[+3]_40 chr17:34981750-34982250 8.1e-05 34_[+3]_54 chr1:47690395-47690895 8.1e-05 83_[-3]_5 chr6:90137763-90138263 8.1e-05 61_[-3]_27 chr6:15735649-15736149 8.7e-05 68_[-3]_20 chr9:1458443-1458943 9.5e-05 62_[-3]_26 chr6:142885231-142885731 9.5e-05 39_[-3]_49 chr1:177255361-177255861 9.5e-05 1_[+3]_87 chr19:18364892-18365392 9.5e-05 38_[+3]_50 chr6:28212745-28213245 0.0001 15_[-3]_73 chr8:109611137-109611637 0.00011 25_[+3]_63 chr1:164611765-164612265 0.00011 35_[-3]_53 chr20:44728721-44729221 0.00012 29_[+3]_59 chr2:53987375-53987875 0.00012 65_[+3]_23 chr1:9802989-9803489 0.00012 50_[+3]_38 chr10:22552765-22553265 0.00013 61_[-3]_27 chr14:76486253-76486753 0.00013 4_[+3]_84 chr3:190972895-190973395 0.00018 68_[-3]_20 chr11:110305510-11030601 0.00018 33_[+3]_55 chr1:221393990-221394490 0.00018 37_[-3]_51 chr18:48998095-48998595 0.00019 13_[+3]_75 chr6:125511920-125512420 0.00019 9_[+3]_79 chr18:50870160-50870660 0.00019 65_[+3]_23 chr10:7525176-7525676 0.00021 51_[+3]_37 chr15:66886241-66886741 0.00024 78_[-3]_10 chr21:36909840-36910340 0.00025 82_[+3]_6 chr15:71279016-71279516 0.00029 40_[+3]_48 chr1:153490323-153490823 0.00031 32_[-3]_56 chr10:87845976-87846476 0.0004 23_[-3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATGACRTCAYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SATGACRTCAYY width=12 seqs=116 chr17:78558309-78558809 ( 3) GATGACATCACC 1 chr17:74514037-74514537 ( 71) CATGACATCACC 1 chr1:3992053-3992553 ( 56) CATGACATCACC 1 chr16:19102301-19102801 ( 64) CATGACATCACC 1 chr5:158451510-158452010 ( 89) GATGACATCATC 1 chr17:7931968-7932468 ( 2) GATGACGTCACC 1 chrX:41084525-41085025 ( 55) GATGACGTCACC 1 chr9:97921992-97922492 ( 37) GATGACGTCATC 1 chr15:70494068-70494568 ( 83) GATGACCTCATC 1 chr18:3966565-3967065 ( 77) GATGACATCAGC 1 chr9:86741394-86741894 ( 63) CATGACGTCACT 1 chr14:68140172-68140672 ( 41) CATGACATCAGC 1 chr5:168317634-168318134 ( 65) CATGACGTCACT 1 chr3:9141215-9141715 ( 52) CATGACCTCATC 1 chr17:51046568-51047068 ( 49) GATGACGTCATT 1 chr17:5526721-5527221 ( 70) GATGACCTCACT 1 chr1:159916140-159916640 ( 32) AATGACATCACT 1 chr8:144456660-144457160 ( 41) GATGACATCACA 1 chr17:57541792-57542292 ( 66) GGTGACATCATC 1 chr10:5548802-5549302 ( 44) GGTGACGTCACC 1 chr1:1000621-1001121 ( 51) GGTGACGTCACC 1 chr5:14264585-14265085 ( 15) GGTGACGTCACC 1 chr7:133492110-133492610 ( 25) AATGACATCATT 1 chr9:77099339-77099839 ( 21) AATGACATCAGC 1 chr15:89498160-89498660 ( 32) AATGACCTCATC 1 chr10:85642760-85643260 ( 15) CATGACATAACC 1 chr3:9976950-9977450 ( 85) GGTGACCTCACC 1 chr3:100002787-100003287 ( 14) CATTACGTCATC 1 chr1:81032864-81033364 ( 27) CATGATATCACC 1 chr6:169395992-169396492 ( 31) AATGACCTCACT 1 chr10:129440215-12944071 ( 12) GATGACACCATC 1 chr3:168974969-168975469 ( 18) CATTACATCACT 1 chr9:17900549-17901049 ( 33) AATGACATCACA 1 chr12:117128158-11712865 ( 27) CATGTCATCACC 1 chr1:233112912-233113412 ( 7) GGTGACATCAGC 1 chr17:37567065-37567565 ( 62) GGTGACATCATT 1 chr17:46101204-46101704 ( 5) GATTACATCATT 1 chr17:60173278-60173778 ( 56) GATGACATCAGA 1 chr1:68217035-68217535 ( 34) CATGAGGTCACC 1 chr9:129495811-129496311 ( 72) CATTACCTCATC 1 chr8:18954690-18955190 ( 29) CGTGACGTCACT 1 chr2:234880375-234880875 ( 23) CATTACATCAGC 1 chr6:149704761-149705261 ( 27) GATGACTTCACC 1 chr12:124720640-12472114 ( 61) GATGAGCTCACC 1 chr7:158097563-158098063 ( 13) TATGACATCATT 1 chr5:99020167-99020667 ( 87) TATGACATCATT 1 chr15:67792456-67792956 ( 6) AATGACATAATC 1 chr7:116218165-116218665 ( 38) CATGATATCACT 1 chr16:72927611-72928111 ( 50) CATGACATAATT 1 chr1:229221146-229221646 ( 21) GATGACTTCATC 1 chr1:175841758-175842258 ( 24) GGTGACCTCAGC 1 chr19:34184878-34185378 ( 59) GGTTACATCATC 1 chr1:229230238-229230738 ( 7) AATGACACCATC 1 chr10:93209006-93209506 ( 2) TATGACCTCACT 1 chr17:77233781-77234281 ( 19) GATGAGGTCAGC 1 chr13:41696497-41696997 ( 2) GATGACATAACA 1 chr7:152709602-152710102 ( 23) AATGACCTCATA 1 chr13:112213417-11221391 ( 5) AATGACGCCATC 1 chr14:100022752-10002325 ( 28) GATGATCTCACT 1 chr6:16849225-16849725 ( 22) GATGACATCTTC 1 chr6:136403046-136403546 ( 39) GATGTCGTCAGC 1 chr1:8626296-8626796 ( 26) CATGATGTCATT 1 chr3:115518407-115518907 ( 80) GATGACCTAATT 1 chr1:39183755-39184255 ( 24) TGTGACATCATC 1 chr1:93960727-93961227 ( 46) GATGACATCCCC 1 chr9:14326308-14326808 ( 33) GATGACACCACA 1 chr5:108765629-108766129 ( 86) CATGACTTCACT 1 chr22:27115741-27116241 ( 46) CATTAGATCACC 1 chr14:89279580-89280080 ( 72) GATGTCATCACA 1 chr3:71102143-71102643 ( 55) CATGATATCACA 1 chr9:127388304-127388804 ( 25) GGTTACCTCATC 1 chr1:61141546-61142046 ( 41) AATTACATCAGT 1 chr1:80054123-80054623 ( 60) CATGAGCTCATT 1 chr12:89769160-89769660 ( 28) GATTTCATCATC 1 chr6:1630697-1631197 ( 46) AGTGACCTCAGC 1 chr6:41767097-41767597 ( 44) AGTTACGTCACC 1 chr21:29217695-29218195 ( 32) AATTACATCATA 1 chr19:33473622-33474122 ( 8) CATGAGATCATA 1 chr22:29621997-29622497 ( 85) CATTACCTCAGT 1 chr6:87095013-87095513 ( 8) CATGACGTCAAT 1 chr5:17305899-17306399 ( 23) AATGATGTCAGC 1 chr1:155127056-155127556 ( 54) GATGACACAATC 1 chr10:68153488-68153988 ( 66) CATGATACCATC 1 chr6:37191853-37192353 ( 1) TATGACACCACT 1 chr20:25252755-25253255 ( 17) GATGTGGTCACC 1 chr6:134109467-134109967 ( 71) GATTTCATCATT 1 chr6:142323331-142323831 ( 74) GATTTCGTCACT 1 chr10:63707208-63707708 ( 49) CATGATATAACT 1 chr17:34981750-34982250 ( 35) AACGACGTCACC 1 chr1:47690395-47690895 ( 84) GATAACATCATC 1 chr6:90137763-90138263 ( 62) CATGATCTCATA 1 chr6:15735649-15736149 ( 69) AATGATGTCAGT 1 chr9:1458443-1458943 ( 63) AATGACATCTGC 1 chr6:142885231-142885731 ( 40) TGTGACCTCAGC 1 chr1:177255361-177255861 ( 2) GATTAGATCACA 1 chr19:18364892-18365392 ( 39) GATGACGTAAAC 1 chr6:28212745-28213245 ( 16) CATGATCTAATC 1 chr8:109611137-109611637 ( 26) CATTACATCAAT 1 chr1:164611765-164612265 ( 36) CATTACATCATG 1 chr20:44728721-44729221 ( 30) AATGACGTCTTT 1 chr2:53987375-53987875 ( 66) GATGTTGTCACT 1 chr1:9802989-9803489 ( 51) GATTAGATAACC 1 chr10:22552765-22553265 ( 62) CATGAGGTAATT 1 chr14:76486253-76486753 ( 5) AATTACATCTCC 1 chr3:190972895-190973395 ( 69) TATTACCTCATA 1 chr11:110305510-11030601 ( 34) AATTACATAAGT 1 chr1:221393990-221394490 ( 38) CAAGACGTCACT 1 chr18:48998095-48998595 ( 14) CATGATGTAACA 1 chr6:125511920-125512420 ( 10) AACTACATCACC 1 chr18:50870160-50870660 ( 66) AATGTCATAATT 1 chr10:7525176-7525676 ( 52) GATGACGCAATA 1 chr15:66886241-66886741 ( 79) GATGACGCCCTC 1 chr21:36909840-36910340 ( 83) TATGACGCAATC 1 chr15:71279016-71279516 ( 41) GGTTACGTAACA 1 chr1:153490323-153490823 ( 33) CGTTTCGTCATT 1 chr10:87845976-87846476 ( 24) CGTGACATAATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATGACRTCAYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 10.0944 E= 1.1e-030 -46 49 87 -198 163 -1350 -55 -1350 -498 -372 -1350 184 -498 -1350 177 -34 174 -1350 -1350 -166 -1350 182 -140 -128 87 -33 37 -340 -1350 -140 -1350 174 -81 190 -1350 -1350 180 -372 -1350 -298 -340 90 -63 57 -98 121 -372 22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATGACRTCAYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 116 E= 1.1e-030 0.198276 0.318966 0.413793 0.068966 0.844828 0.000000 0.155172 0.000000 0.008621 0.017241 0.000000 0.974138 0.008621 0.000000 0.775862 0.215517 0.913793 0.000000 0.000000 0.086207 0.000000 0.801724 0.086207 0.112069 0.500000 0.181034 0.293103 0.025862 0.000000 0.086207 0.000000 0.913793 0.155172 0.844828 0.000000 0.000000 0.948276 0.017241 0.000000 0.034483 0.025862 0.422414 0.146552 0.405172 0.137931 0.525862 0.017241 0.318966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATGACRTCAYY MEME-3 regular expression -------------------------------------------------------------------------------- [GC]AT[GT]AC[AG]TCA[CT][CT] -------------------------------------------------------------------------------- Time 1040.18 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 width = 31 sites = 54 llr = 669 E-value = 2.3e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 Description -------------------------------------------------------------------------------- Simplified A 11:2:211:2:11:1::1:11111:2:1:32 pos.-specific C 5473646573755745725564627475745 probability G 3513332221212:13124331262111224 matrix T ::121112151313421511:511:33311: bits 2.1 1.9 1.7 1.5 Relative 1.3 Entropy 1.1 * * * * * (17.9 bits) 0.9 ** * * * * * * * * * 0.6 *** * * * * * ** * * * * * * * 0.4 *** * * * ** * ** ******* *** * 0.2 *** *************************** 0.0 ------------------------------- Multilevel CGCCCCCCCTCCCCCCCTCCCTCGCCCCCCC consensus GC GGGGGGCGTGTTG CGGGCGCGTTT AG sequence T A T G A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr11:112961079-11296157 + 40 3.70e-11 GAGGTTCTCA CCCCCGCCCCCCGCTCCTCGCTCCCATCCCA GTTCCATCAA chr1:234723925-234724425 - 10 1.73e-10 TCTCTCTCCA CCTCCCTCCTCCCTTCCTCCCTCCCTCTCCC TCCATTTCT chr20:52972202-52972702 - 70 2.03e-10 . CGCGCACGCACCCCCGCTTCCTCGCACACAC ACACTCACAC chr20:4041777-4042277 - 51 8.35e-10 GGCACCTCCT CCCAGCCCCATCCCTGCTGGCTCGCCTCCCA CTCCATGCTA chr3:194134798-194135298 + 2 1.31e-09 c cgtcgccgccccccgcctccctgcccccggG GCGCGCGcac chr15:40092244-40092744 + 40 2.02e-09 cacCCTTGTG CGCCCGCCCGCTCTCCCTCCCCAGCATCTCC AGCTCGGTGC chr1:155244578-155245078 - 22 2.69e-09 CTCGCTCTCT CGCTCTCTCTCGCTCGCTCTCTCGCTCTCGC TCTCTCTCTC chr15:96361013-96361513 + 1 9.18e-09 . CGGCCTCCCCGCCCCCGGCCCCGGGACCCCG GAGCGGAGAT chr17:7931968-7932468 - 17 1.05e-08 GGCAGCCTCC CGCCCACTGTCCACGGCTCCGCCTCTCTCGC CTCGATGACG chr17:45148336-45148836 - 20 1.19e-08 GTTCTCCTCC GCCTCCTCCTCTTTTCCTCCCTCCCTCCTCC CCCTTCCCAC chr21:32771755-32772255 - 7 2.55e-08 AGAGGTGTGG GGCTCTCTCTCTCTCTCTCGCTCTCTCTCTC TCTCTC chr17:3890048-3890548 + 38 3.68e-08 TGTGAGGACG CCCGCTCCCACCATCCCTGGGGAGCCCCCAA GCACCAATAC chr11:125164545-12516504 - 67 4.15e-08 GCA GCCGCCGCCGCGCCGCCGCCGCCGCCTGCAA AAGCGTCTCT chr16:73070531-73071031 + 68 4.15e-08 GCCTCTCTCC AGCGCCCGGTCCCCTCCCCCACCACTCACGC CT chr9:81689719-81690219 - 35 6.67e-08 GACAGCCCAG CCCCGCCGCTCTCCTTCCCACCGACCTTCCC ATCATCAGTG chr12:54051968-54052468 + 42 8.41e-08 CAGGCAGCCA GCGGCCGCCAGCCCTGCGCCGCCGCCGACAC AAAGAGTGCG chr12:56725106-56725606 - 23 9.43e-08 GGATCCTAGT CCCACCCCCTCCGCTCCAGGCTTCCTTCTGC AACAGGCGTG chr9:129495811-129496311 - 39 1.65e-07 ACCTCATCGC GGCGCGCGCTCATTGGCTGGCTCCCCCCTTG AAGGACAGCC chr1:6404541-6405041 + 66 2.54e-07 TAAGCCGCAA GGCGCTCCGTCTCTCGGTCTGTGGCCCTCTG GCTC chr19:36604616-36605116 + 68 2.83e-07 GCACACACAC CCCCTGCTGTGCACACCCCCCGCCCCCCCGG GA chr21:39313566-39314066 - 67 3.14e-07 ATT CGGACCACGCGCCCTCCCCTCCCCCACTCGC TGCTGCGGCG chr4:13640089-13640589 - 26 4.75e-07 TGCATGAGAT GACGCACTCTCTCCCCCTCCATCGCCCCATA AAACTCTCCT chr21:42974398-42974898 + 70 5.26e-07 CACCCAGGTA AGCTGTCACTCAACCGCTccgccgccgccgc chr4:18021610-18022110 - 9 5.26e-07 ACCCCCCTCC GGGGGGCGCGCGCTCCGGGGCTCGCGCCGAG GGCTCGCG chr19:37655845-37656345 + 54 5.26e-07 GCTGAGTGAC GGCCGCCGCGCCCCCGCGTACCTGGACCGAG TGCCTGGCCG chr12:54359085-54359585 - 70 6.43e-07 . CGCACGCTCTCTCTCTTTCGCTGTCTCTTAC AGGCAGATTT chr22:20117190-20117690 - 12 7.10e-07 GCTCAGGAGG CGGACACTCTCATTGTCCGGCCCGCCCCGCG CTTCCCGCCA chr1:177209265-177209765 - 42 8.64e-07 TTAGCTATTG CCCAGCCCCACCATTCTTGACTCTCTGCCAG TTCTACAGCC chr5:14264585-14265085 - 34 9.52e-07 CAGTTTGGCA GGCACCGCCCTCGCTCCGCAAGCGCACGCGC AGAGGGAGGT chr19:28863910-28864410 + 15 1.15e-06 gaaacagaat ggtacggccctcgtccctgggcagctcacag acgagacagg chr15:74546097-74546597 - 43 1.27e-06 CAGCTGCCAA GGCGGGGGCAGCCCAGCCGCCTCGGGCCTGA ACTTTCCCAG chr1:93078888-93079388 - 67 1.39e-06 AAC ACCGCGCCCTGCGTCCCCGACTGGGGCTGAA CAAAGAAGGA chrX:73944014-73944514 + 64 1.84e-06 GACGGCTGGG CGCCGGGCCTGTTTGGCTGTGACGCCCACCC CCGGCT chr11:47578729-47579229 + 30 2.02e-06 CATCCCGGAG CCCGGAACCTCCGCTTCCGGCTCCACGTCCG CCCGGAAGAA chr5:124747150-124747650 - 56 2.64e-06 GGTTGTTACT AACTCGCCCATCCCCCTCTCCCAGCCCCGAC ATTTCCAGCA chr17:7836709-7837209 + 3 2.64e-06 TT CCTCCCCCTTCTATTCCCTCCCACCTCTGCC CCGAGTCCAG chr20:58650908-58651408 - 64 2.89e-06 TCCGTC CCTCGCGAGTGCCCCCCTGCGACGCTCGCAA GCCTTGCTCG chr2:45009333-45009833 + 58 2.89e-06 GTCACTGGTA ACCCGAGCCTCGGCGGGCCGGGCGGCTCCCC CCGGCCGGCT chr16:1271746-1272246 + 27 3.15e-06 CTGCATGGTT GGCACCCTGCCAGCTGGTCTCTGGGCCTCTG CATGGTTGGC chr12:12266885-12267385 + 61 3.15e-06 GGAGTCGGCA ACCGCACGCACAGCCTCTGCCTGAGACCCTG GGAGAGGTT chrX:41084525-41085025 + 10 3.15e-06 GAGATCTCA TCTTTCCGCGCCCCTCCCCCCACGGTCCCGG AAAAGGGGGA chr10:93702418-93702918 - 56 3.44e-06 CGTCCCTTTC CGGGCCGTTTCTCCCGCTGCCCTTGTTTCCC GGAGCTGTTC chr19:1383571-1384071 + 68 3.76e-06 TTTCCGCATG CGCTCCGAGCCGCTTTGGGCGGCGGCCCCGG GA chr1:1000621-1001121 - 3 4.09e-06 TCGCGTCACG CGCACGTTCTGCTCCTCGTGGTCCGGCCCGG CC chr6:100464761-100465261 + 28 4.85e-06 CACTCACAAG CCCCCTCGCCTCCCATTGGCCTGGCGCGGCC AGGGGCGAGG chr5:113203155-113203655 + 10 6.77e-06 TGACTCAGC GCTGTCCCTCCCCCACCGGCCTCGGATCTCA TTCCTCTCAA chr12:120904401-12090490 + 21 7.35e-06 CAATCGGGAA CCCCGATGCGCGTCTGTTGGCTGCCACTCAG CTGTCAACCG chr7:100101249-100101749 - 70 8.63e-06 . GATTCCCTTCCGACGCCCGCACCGCCTCCCC GTCACTCATT chr19:4968529-4969029 - 16 8.63e-06 TGACAAGGGA GCCTCAGGGCCCGCCCGACGACCGCACAGAG AGGAGCCAGT chr16:79600660-79601160 + 67 9.35e-06 GGGACGGGCT GGCTTAACCCTTCCTGCGCCGCTGCCTACCC GGG chr19:38899320-38899820 + 67 1.18e-05 CCACTGTGTC CCGTCACCGACTGCTCTGTCCTGTCACCGAC TGC chr10:129525343-12952584 - 64 1.28e-05 CATCGG AGCCGGCCCCGCACCGCACAGCACCTTTCTG ATTAATGATG chr19:4575296-4575796 - 4 1.49e-05 CCGCTCTGAC CCCGGGGCCTTTCCCCTGGGACCTATTTCCC GCC chr1:44213176-44213676 + 41 1.89e-04 CTACAACACC GACCGGAAGTGTTTCTGTCGGCCGCGTTCCG AATGAGCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:112961079-11296157 3.7e-11 39_[+4]_30 chr1:234723925-234724425 1.7e-10 9_[-4]_60 chr20:52972202-52972702 2e-10 69_[-4] chr20:4041777-4042277 8.3e-10 50_[-4]_19 chr3:194134798-194135298 1.3e-09 1_[+4]_68 chr15:40092244-40092744 2e-09 39_[+4]_30 chr1:155244578-155245078 2.7e-09 21_[-4]_48 chr15:96361013-96361513 9.2e-09 [+4]_69 chr17:7931968-7932468 1e-08 16_[-4]_53 chr17:45148336-45148836 1.2e-08 19_[-4]_50 chr21:32771755-32772255 2.6e-08 6_[-4]_63 chr17:3890048-3890548 3.7e-08 37_[+4]_32 chr11:125164545-12516504 4.2e-08 66_[-4]_3 chr16:73070531-73071031 4.2e-08 67_[+4]_2 chr9:81689719-81690219 6.7e-08 34_[-4]_35 chr12:54051968-54052468 8.4e-08 41_[+4]_28 chr12:56725106-56725606 9.4e-08 22_[-4]_47 chr9:129495811-129496311 1.6e-07 38_[-4]_31 chr1:6404541-6405041 2.5e-07 65_[+4]_4 chr19:36604616-36605116 2.8e-07 67_[+4]_2 chr21:39313566-39314066 3.1e-07 66_[-4]_3 chr4:13640089-13640589 4.8e-07 25_[-4]_44 chr21:42974398-42974898 5.3e-07 69_[+4] chr4:18021610-18022110 5.3e-07 8_[-4]_61 chr19:37655845-37656345 5.3e-07 53_[+4]_16 chr12:54359085-54359585 6.4e-07 69_[-4] chr22:20117190-20117690 7.1e-07 11_[-4]_58 chr1:177209265-177209765 8.6e-07 41_[-4]_28 chr5:14264585-14265085 9.5e-07 33_[-4]_36 chr19:28863910-28864410 1.2e-06 14_[+4]_55 chr15:74546097-74546597 1.3e-06 42_[-4]_27 chr1:93078888-93079388 1.4e-06 66_[-4]_3 chrX:73944014-73944514 1.8e-06 63_[+4]_6 chr11:47578729-47579229 2e-06 29_[+4]_40 chr5:124747150-124747650 2.6e-06 55_[-4]_14 chr17:7836709-7837209 2.6e-06 2_[+4]_67 chr20:58650908-58651408 2.9e-06 63_[-4]_6 chr2:45009333-45009833 2.9e-06 57_[+4]_12 chr16:1271746-1272246 3.2e-06 26_[+4]_43 chr12:12266885-12267385 3.2e-06 60_[+4]_9 chrX:41084525-41085025 3.2e-06 9_[+4]_60 chr10:93702418-93702918 3.4e-06 55_[-4]_14 chr19:1383571-1384071 3.8e-06 67_[+4]_2 chr1:1000621-1001121 4.1e-06 2_[-4]_67 chr6:100464761-100465261 4.9e-06 27_[+4]_42 chr5:113203155-113203655 6.8e-06 9_[+4]_60 chr12:120904401-12090490 7.3e-06 20_[+4]_49 chr7:100101249-100101749 8.6e-06 69_[-4] chr19:4968529-4969029 8.6e-06 15_[-4]_54 chr16:79600660-79601160 9.3e-06 66_[+4]_3 chr19:38899320-38899820 1.2e-05 66_[+4]_3 chr10:129525343-12952584 1.3e-05 63_[-4]_6 chr19:4575296-4575796 1.5e-05 3_[-4]_66 chr1:44213176-44213676 0.00019 40_[+4]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS width=31 seqs=54 chr11:112961079-11296157 ( 40) CCCCCGCCCCCCGCTCCTCGCTCCCATCCCA 1 chr1:234723925-234724425 ( 10) CCTCCCTCCTCCCTTCCTCCCTCCCTCTCCC 1 chr20:52972202-52972702 ( 70) CGCGCACGCACCCCCGCTTCCTCGCACACAC 1 chr20:4041777-4042277 ( 51) CCCAGCCCCATCCCTGCTGGCTCGCCTCCCA 1 chr3:194134798-194135298 ( 2) CGTCGCCGCCCCCCGCCTCCCTGCCCCCGGG 1 chr15:40092244-40092744 ( 40) CGCCCGCCCGCTCTCCCTCCCCAGCATCTCC 1 chr1:155244578-155245078 ( 22) CGCTCTCTCTCGCTCGCTCTCTCGCTCTCGC 1 chr15:96361013-96361513 ( 1) CGGCCTCCCCGCCCCCGGCCCCGGGACCCCG 1 chr17:7931968-7932468 ( 17) CGCCCACTGTCCACGGCTCCGCCTCTCTCGC 1 chr17:45148336-45148836 ( 20) GCCTCCTCCTCTTTTCCTCCCTCCCTCCTCC 1 chr21:32771755-32772255 ( 7) GGCTCTCTCTCTCTCTCTCGCTCTCTCTCTC 1 chr17:3890048-3890548 ( 38) CCCGCTCCCACCATCCCTGGGGAGCCCCCAA 1 chr11:125164545-12516504 ( 67) GCCGCCGCCGCGCCGCCGCCGCCGCCTGCAA 1 chr16:73070531-73071031 ( 68) AGCGCCCGGTCCCCTCCCCCACCACTCACGC 1 chr9:81689719-81690219 ( 35) CCCCGCCGCTCTCCTTCCCACCGACCTTCCC 1 chr12:54051968-54052468 ( 42) GCGGCCGCCAGCCCTGCGCCGCCGCCGACAC 1 chr12:56725106-56725606 ( 23) CCCACCCCCTCCGCTCCAGGCTTCCTTCTGC 1 chr9:129495811-129496311 ( 39) GGCGCGCGCTCATTGGCTGGCTCCCCCCTTG 1 chr1:6404541-6405041 ( 66) GGCGCTCCGTCTCTCGGTCTGTGGCCCTCTG 1 chr19:36604616-36605116 ( 68) CCCCTGCTGTGCACACCCCCCGCCCCCCCGG 1 chr21:39313566-39314066 ( 67) CGGACCACGCGCCCTCCCCTCCCCCACTCGC 1 chr4:13640089-13640589 ( 26) GACGCACTCTCTCCCCCTCCATCGCCCCATA 1 chr21:42974398-42974898 ( 70) AGCTGTCACTCAACCGCTCCGCCGCCGCCGC 1 chr4:18021610-18022110 ( 9) GGGGGGCGCGCGCTCCGGGGCTCGCGCCGAG 1 chr19:37655845-37656345 ( 54) GGCCGCCGCGCCCCCGCGTACCTGGACCGAG 1 chr12:54359085-54359585 ( 70) CGCACGCTCTCTCTCTTTCGCTGTCTCTTAC 1 chr22:20117190-20117690 ( 12) CGGACACTCTCATTGTCCGGCCCGCCCCGCG 1 chr1:177209265-177209765 ( 42) CCCAGCCCCACCATTCTTGACTCTCTGCCAG 1 chr5:14264585-14265085 ( 34) GGCACCGCCCTCGCTCCGCAAGCGCACGCGC 1 chr19:28863910-28864410 ( 15) GGTACGGCCCTCGTCCCTGGGCAGCTCACAG 1 chr15:74546097-74546597 ( 43) GGCGGGGGCAGCCCAGCCGCCTCGGGCCTGA 1 chr1:93078888-93079388 ( 67) ACCGCGCCCTGCGTCCCCGACTGGGGCTGAA 1 chrX:73944014-73944514 ( 64) CGCCGGGCCTGTTTGGCTGTGACGCCCACCC 1 chr11:47578729-47579229 ( 30) CCCGGAACCTCCGCTTCCGGCTCCACGTCCG 1 chr5:124747150-124747650 ( 56) AACTCGCCCATCCCCCTCTCCCAGCCCCGAC 1 chr17:7836709-7837209 ( 3) CCTCCCCCTTCTATTCCCTCCCACCTCTGCC 1 chr20:58650908-58651408 ( 64) CCTCGCGAGTGCCCCCCTGCGACGCTCGCAA 1 chr2:45009333-45009833 ( 58) ACCCGAGCCTCGGCGGGCCGGGCGGCTCCCC 1 chr16:1271746-1272246 ( 27) GGCACCCTGCCAGCTGGTCTCTGGGCCTCTG 1 chr12:12266885-12267385 ( 61) ACCGCACGCACAGCCTCTGCCTGAGACCCTG 1 chrX:41084525-41085025 ( 10) TCTTTCCGCGCCCCTCCCCCCACGGTCCCGG 1 chr10:93702418-93702918 ( 56) CGGGCCGTTTCTCCCGCTGCCCTTGTTTCCC 1 chr19:1383571-1384071 ( 68) CGCTCCGAGCCGCTTTGGGCGGCGGCCCCGG 1 chr1:1000621-1001121 ( 3) CGCACGTTCTGCTCCTCGTGGTCCGGCCCGG 1 chr6:100464761-100465261 ( 28) CCCCCTCGCCTCCCATTGGCCTGGCGCGGCC 1 chr5:113203155-113203655 ( 10) GCTGTCCCTCCCCCACCGGCCTCGGATCTCA 1 chr12:120904401-12090490 ( 21) CCCCGATGCGCGTCTGTTGGCTGCCACTCAG 1 chr7:100101249-100101749 ( 70) GATTCCCTTCCGACGCCCGCACCGCCTCCCC 1 chr19:4968529-4969029 ( 16) GCCTCAGGGCCCGCCCGACGACCGCACAGAG 1 chr16:79600660-79601160 ( 67) GGCTTAACCCTTCCTGCGCCGCTGCCTACCC 1 chr19:38899320-38899820 ( 67) CCGTCACCGACTGCTCTGTCCTGTCACCGAC 1 chr10:129525343-12952584 ( 64) AGCCGGCCCCGCACCGCACAGCACCTTTCTG 1 chr19:4575296-4575796 ( 4) CCCGGGGCCTTTCCCCTGGGACCTATTTCCC 1 chr1:44213176-44213676 ( 41) GACCGGAAGTGTTTCTGTCGGCCGCGTTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 10.7966 E= 2.3e-020 -107 119 55 -388 -188 97 108 -1240 -1240 167 -81 -88 -56 47 38 -42 -1240 147 38 -188 -42 78 29 -107 -188 147 -3 -188 -188 108 8 -42 -1240 167 -16 -188 -71 19 -103 76 -1240 155 -16 -107 -156 119 -81 -7 -88 119 -16 -107 -1240 155 -1240 29 -188 91 -62 37 -1240 114 47 -56 -1240 167 -62 -107 -230 8 8 76 -1240 114 78 -130 -130 108 47 -156 -130 143 29 -1240 -230 78 -129 76 -130 143 -16 -188 -230 8 134 -107 -288 171 -3 -1240 -30 71 -103 12 -1240 155 -162 -7 -107 108 -162 21 -388 155 -29 -107 3 63 8 -107 -71 103 71 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 54 E= 2.3e-020 0.129630 0.518519 0.333333 0.018519 0.074074 0.444444 0.481481 0.000000 0.000000 0.722222 0.129630 0.148148 0.185185 0.314815 0.296296 0.203704 0.000000 0.629630 0.296296 0.074074 0.203704 0.388889 0.277778 0.129630 0.074074 0.629630 0.222222 0.074074 0.074074 0.481481 0.240741 0.203704 0.000000 0.722222 0.203704 0.074074 0.166667 0.259259 0.111111 0.462963 0.000000 0.666667 0.203704 0.129630 0.092593 0.518519 0.129630 0.259259 0.148148 0.518519 0.203704 0.129630 0.000000 0.666667 0.000000 0.333333 0.074074 0.425926 0.148148 0.351852 0.000000 0.500000 0.314815 0.185185 0.000000 0.722222 0.148148 0.129630 0.055556 0.240741 0.240741 0.462963 0.000000 0.500000 0.388889 0.111111 0.111111 0.481481 0.314815 0.092593 0.111111 0.611111 0.277778 0.000000 0.055556 0.388889 0.092593 0.462963 0.111111 0.611111 0.203704 0.074074 0.055556 0.240741 0.574074 0.129630 0.037037 0.740741 0.222222 0.000000 0.222222 0.370370 0.111111 0.296296 0.000000 0.666667 0.074074 0.259259 0.129630 0.481481 0.074074 0.314815 0.018519 0.666667 0.185185 0.129630 0.277778 0.351852 0.240741 0.129630 0.166667 0.462963 0.370370 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCNCVCSCYCYCYYSCBSSCYCGCHCYCVS MEME-4 regular expression -------------------------------------------------------------------------------- [CG][GC]C[CGT][CG][CGA][CG][CGT][CG][TC][CG][CT][CG][CT][CT][CG]C[TCG][CG][CG][CG][TC][CG][GC][CG][CTA][CT][CT]C[CAG][CG] -------------------------------------------------------------------------------- Time 1332.00 secs. ******************************************************************************** ******************************************************************************** MOTIF RGCHATAAATCA MEME-5 width = 12 sites = 135 llr = 1125 E-value = 6.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCHATAAATCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 52237:8aa1:7 pos.-specific C 1253::2:::81 probability G 351:3::::::: matrix T 1123:a:::812 bits 2.1 1.9 * * 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.1 ******* (12.0 bits) 0.9 ******** 0.6 ******** 0.4 * * ******** 0.2 ************ 0.0 ------------ Multilevel AGCCATAAATCA consensus GCTAG T sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCHATAAATCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr15:70494068-70494568 - 6 7.43e-07 CACGACCTCA AGCAGTAAATCA ATGTT chr14:100022752-10002325 - 63 7.43e-07 GGACCCAGGC AGCAGTAAATCA TCACAACCAT chr6:158405261-158405761 - 39 8.81e-07 AAACCGTCAC AGCTGTAAATCA TGTGCTTAAT chr7:123643757-123644257 - 20 9.80e-07 GCAGGGCAAA ACCAATAAATCA TGTGCTGCCA chr6:25173814-25174314 + 74 1.41e-06 ATTAGCTCAT GCCCATAAATCA ACACAACCCA chr16:87388430-87388930 - 41 1.56e-06 TGATGTAAGT GGCTGTAAATCA TGCTGTCTAG chr19:38862526-38863026 + 80 1.56e-06 ggtgcaacaa ggctgtaaatca attgttcag chr6:136403046-136403546 - 73 2.78e-06 CAAAGACAAT GCCTATAAATCA CTTGCGTCAG chr14:89279580-89280080 + 50 2.78e-06 CAATTGCGTG GCCTATAAATCA GCACTAAAAA chr1:87718323-87718823 + 71 3.11e-06 AGCACAGTCA AGCTATAAATCT GTCCAAAGGC chr3:72123966-72124466 - 42 3.11e-06 CCTGCAGGTC ACCAGTAAATCA CTTGCCTAAA chr5:99900476-99900976 - 84 3.11e-06 ATCTG AGCTATAAATCT GCAGTGATTC chr19:38543936-38544436 - 18 3.11e-06 AGAGAAAAAC AGCAATCAATCA TAGAGGAGCT chr10:72098736-72099236 - 47 3.11e-06 CAGTTTGCAG AGCTATAAATCT GTCAGTCTTA chr8:37302571-37303071 + 50 3.96e-06 AACTGGAACA TGCAATAAATCA TTAGAATGCC chr15:71747488-71747988 + 17 3.96e-06 ttcatgagtc agaaataaatca gcaaaacttt chr5:57042472-57042972 + 23 5.44e-06 tctcctaaca gccagtaaatca ccaggtcctg chr10:132700571-13270107 - 76 5.44e-06 AGCCAAAAGC ATCCATAAATCA GCAGAGAAAG chr12:1171601-1172101 + 34 6.52e-06 CCACTTGACT GGAAATAAATCA CCCAGACTGA chr1:233112912-233113412 - 35 7.56e-06 ATCTGCTTCT AGCTGTAAATCT ACCCTGGTGA chr1:184622175-184622675 - 2 7.56e-06 TGTGTAAGCC AGCTGTAAATCT C chr5:175378418-175378918 + 68 8.96e-06 GTTAGTCATA GTCCATAAATCA CCTCTTCACT chr1:41870130-41870630 - 67 8.96e-06 GAGGGTGACA GACAGTAAATCA GTATTGTGTG chr6:2028603-2029103 - 2 8.96e-06 TCTATTATGA ACACATAAATCA T chr16:79600660-79601160 + 20 8.96e-06 AACTTTTCGG AGCTGTCAATCA GGGCCCAATC chr1:3403743-3404243 + 66 8.96e-06 CTTTACATAA ACACATAAATCA CAATTAACAA chr1:41783158-41783658 + 32 1.03e-05 GGGGTGGCAC GGTTGTAAATCA GAGGAATGGC chr18:62526105-62526605 + 2 1.03e-05 G GGGAATAAATCA TAGGGGCCGC chr1:220119015-220119515 - 86 1.20e-05 TAA AGCAATAAATCC ATCATAAAAC chr1:228861053-228861553 + 32 1.20e-05 ATGGTTCTGG GTCAATAAATCA GTCAGTAAGC chr12:12839802-12840302 - 34 1.20e-05 TTTATGGACA GGCTGTAAATCT GAACATGACA chr9:81689719-81690219 + 69 1.42e-05 GGCGGGGCTG GGCTGTCAATCA AAGTAACGTG chr6:150196030-150196530 + 1 1.42e-05 . AACAATAAATCT TCAGCCCTGC chr11:72308447-72308947 - 50 1.42e-05 GTGGGCGCAG AGCAGTAAAACA TATTGTATAC chr5:90548030-90548530 + 13 1.42e-05 CCAAACCTCA AGTAATAAATCT CAAAAGCTTC chr12:54359085-54359585 + 54 1.59e-05 GCCCTGGGCT GACCATAAATCT GCCTGTAAGA chr19:34218183-34218683 - 25 1.59e-05 CAGCATATCC AGACATAAATCT AGATAAGTAG chr5:124662174-124662674 + 87 1.59e-05 AGGCGTGTGA GCCAATCAATCA CA chr13:112346389-11234688 + 58 1.83e-05 TCAGTAAGCA GGCTATAAATTA CAGACAGATT chr22:35477880-35478380 + 54 1.83e-05 GAAGGAAGGG GCAAATAAATCA CCAAGACAGG chr5:17379027-17379527 + 26 1.83e-05 AAGCACTGGC TGTAATAAATCA CGAAAAGCGA chr10:75402385-75402885 - 50 2.11e-05 CAACAAAAGC TGACATAAATCA CGGGAGGATT chr14:96979558-96980058 + 74 2.11e-05 GGTGTGTCCC AAGCATAAATCA ACCGTAGAGG chr1:54272958-54273458 - 41 2.11e-05 ATGGAAAGTT GAACATAAATCA ATGTCTGCCG chr11:11463347-11463847 + 52 2.11e-05 TACTGTCCTA AGTCGTAAATCT CTCACCCCCA chr3:61894890-61895390 + 28 2.11e-05 GGAAGAAGAC AGCAGTAAATTA TAAACAGGTA chr4:91064406-91064906 + 42 2.11e-05 agcagctgtt tactataaatca ggctgataca chr17:8288217-8288717 + 14 2.36e-05 acacagcgag accTGtcaatca atcaatcaat chr18:42850146-42850646 + 74 2.36e-05 AAGTTGGCCT GGACATAAATCT GGTGGCAGAC chr4:80307286-80307786 - 11 2.69e-05 GAATGGTACT ACATGTAAATCA AAGTAATTAG chr1:81032864-81033364 - 75 2.69e-05 GACACAGAGT AATTGTAAATCA CCATGTGAGA chr15:67792456-67792956 + 54 3.03e-05 ATCAAGATGA AGTTGTAAATCT GCTCTGTGAG chr10:7311286-7311786 + 81 3.03e-05 AGCTACACAG AGCAATAAATGA TCTCCCTG chr6:37191853-37192353 - 39 3.03e-05 ATGCTAGGCA CCCAATAAATCA TCATTCCCAT chr19:47769459-47769959 + 51 3.03e-05 tccatcatcc atccatcaatca tccatccatc chr7:157933489-157933989 - 8 3.41e-05 CCTCCACTAA AACTGTCAATCA GAGTGAC chr7:157932453-157932953 - 47 3.41e-05 CCTCCTCTTA AACTGTCAATCA GAATGACACT chr1:169942357-169942857 - 89 3.83e-05 . TGCAGTAAATCT GCAGCAGTTA chr1:28246631-28247131 - 85 3.83e-05 ATCA ATCAATCAATCA ATCGTTTGAT chr7:159146514-159147014 + 25 4.31e-05 TCTGGCTGGC ATCTATCAATCA CCTATCATCT chr8:124077232-124077732 + 61 4.31e-05 AGGAAATGAG GGCAATAAATGA TCTTGCCTGT chr6:142885231-142885731 + 78 4.31e-05 AAGCCGTGGT TCCCATCAATCA TAAGTCACTC chr18:59455071-59455571 - 19 4.31e-05 CCTTTAAGGG GAGTATAAATCA TGTCAGATTT chr20:53609804-53610304 - 14 4.82e-05 TTTTCAGAGC TCTTATAAATCA TTGGCTATAA chr6:150418471-150418971 + 80 4.82e-05 GCCCTCTGAA AGATGTCAATCA TTTTCTTTA chr12:54033451-54033951 + 10 4.82e-05 AAAACCTGC GGCCATAAATTT TACGATCCAG chr3:124429015-124429515 - 40 4.82e-05 GATAACATCA GGTCATAAATCC CACTGAAGCT chr10:34320202-34320702 + 59 4.82e-05 CAGCAACCAT TATCATAAATCA TGAATGGAAC chr1:232678509-232679009 - 83 5.33e-05 TACCCT GGCCATCAATTA ATTAGTTAAT chr14:91284855-91285355 + 72 5.33e-05 GCCTGAATGG AGCAATCAATCC TTCAAAACAG chr4:185912693-185913193 - 55 5.33e-05 TGTTTATTGC ACCCATAAAACT AATGCAGCAC chr6:43321930-43322430 + 19 5.96e-05 tcataaaaga aggtataaaaca ctttgagatg chr1:224623773-224624273 + 52 5.96e-05 aaccacggag actaataaaaca aagccctctg chr1:232704730-232705230 + 68 5.96e-05 TCAGCACTGC ATCAATAAAACA GATCCCTTCG chr5:99020167-99020667 - 71 5.96e-05 GTCATACTAA AGCCATATATCA AGGATAAGTG chr12:25333748-25334248 + 78 6.58e-05 CAGCAAGTCA ATCCATAAATTA CACAGGGAGG chr6:89297923-89298423 + 11 6.58e-05 GACCTTCCGT GGGCGTCAATCA GGTTGCGGTT chr6:90137763-90138263 + 82 6.58e-05 TGACTATTCT AATCATAAAaca cacacac chr1:38783552-38784052 + 82 7.27e-05 GATGGAGTGT ATCTGTCAATCA TTGTCAC chr10:7302378-7302878 - 48 7.27e-05 GAATGCTCCT TGTAATCAATCA CTTTTACTAG chr17:48590020-48590520 + 73 7.27e-05 AACTCCCCAA AACCATAAAACT AACTTTATGG chr9:96618149-96618649 - 76 7.27e-05 GTTCTTGGAG ACTCATAAATCC AATTTGGCAG chr8:122969497-122969997 + 51 7.27e-05 GTTATGGAGA GATAATCAATCA CTCTCTCAGT chr6:47134622-47135122 + 50 8.07e-05 ACTCACACCA AGGTATAAATTA CCAGTATTGA chr15:96361013-96361513 - 38 8.07e-05 AACGAGCGAC ACCTGTCAATCT CCGCTCCGGG chr18:3409007-3409507 + 84 8.07e-05 aaacaaaCAA AGCTATAAAATA CTGTA chr6:1809342-1809842 + 52 8.07e-05 ATTTTATGGA GGATATAAATTA CTCAAAGGAG chr5:124735035-124735535 - 75 8.87e-05 TGGCCCTGAG CGCTGTAAATCT GTCAGCTCTT chr10:75379160-75379660 - 9 9.75e-05 ATTATCCATC CGAAGTAAATCA TGCTAATC chr18:75212354-75212854 - 27 9.75e-05 CCAGATGACA GGCGATCAATCA CACATCAAAT chr12:104060776-10406127 - 54 9.75e-05 TTCTGGTGGC AGCTGTCAATCC ATGGCAGCCC chr6:16849225-16849725 - 86 9.75e-05 TGC ACTAGTAAAACA TAATTAAGGA chr1:9802989-9803489 - 78 9.75e-05 CTAGACTATA TCCCATAAATCC AGTTTCCCCT chr5:17305899-17306399 + 48 1.07e-04 TGCGTGTTAA ACAAATAAATTA GAGATTCCTT chr15:58332055-58332555 - 8 1.07e-04 ACACCCAGGA TAGAATAAATCA TCAGAGA chr6:125050648-125051148 - 47 1.07e-04 ACTTTAACTG TCTCATAAATCT ATGCCAACAA chr18:50629058-50629558 - 44 1.07e-04 TGCTCAGTCT GGCTATAAACCA TGTAAACGCC chr5:125409107-125409607 + 61 1.07e-04 CAAACACAGG AAAAATAAAACA GCAATTTAAC chr11:32890794-32891294 - 41 1.07e-04 CCAAACAAGT GGCAATAAAACC TTTATAGTCC chr14:76486253-76486753 + 58 1.17e-04 CGACAGAAAC GATCATAAATTA ACAGATTATG chr2:37376644-37377144 - 3 1.17e-04 TCTATAAAAC TGTCATAAATTA TT chr10:117461665-11746216 - 61 1.17e-04 TAAGCTTGAA AGTCGTAAAACT TGATAATAAA chr1:175470978-175471478 - 15 1.28e-04 GGGCAGGGAA GGACATAAATGA GTTCATTACT chr4:18021610-18022110 - 50 1.28e-04 AGGTAGTGAC ACGTGTCAATCA ACCCCCCTCC chr10:3220724-3221224 + 24 1.28e-04 CCTATCAGAT GCATGTCAATCA CAAGGATTGA chr22:27212650-27213150 + 77 1.28e-04 GACAGCCAAA CCCCATAAAACA AAGTCCAGGG chr2:55843188-55843688 + 59 1.28e-04 TTTGACCAAG GACTATAAAACT GTCAAGATCT chr15:98896842-98897342 - 74 1.52e-04 CCCTCTTTAC AGGAATAAATGA CGTGCCAATG chr15:69143722-69144222 + 71 1.52e-04 GTGGTGTGAA GAACATAAATTA TGGCGCAGTT chr5:101288584-101289084 + 71 1.52e-04 acctaaTAGA AACCATAAAATA AAGCGGTTCA chr6:131816109-131816609 + 47 1.52e-04 TGCCTCCATC AACCATAAAATA CCCCCCAAAC chr17:8222298-8222798 + 63 1.64e-04 ATAGATTGAC GCGTGTCAATCA AAGCGAAACC chr7:140396314-140396814 - 82 1.64e-04 TTAACTT GATTATAAATCC TTTGGTAGAA chr5:14264585-14265085 - 79 1.64e-04 CAAAGAGAAG AGTGATAAATCT GCATCAGTTT chr1:244347889-244348389 - 11 1.64e-04 TATATAGTAC AGCCATAAACCT CAAAAAGCTA chr1:234700131-234700631 - 82 1.78e-04 AAATAAC AGTAATAAATAA TGCCTCTGAG chr6:149704761-149705261 + 80 1.78e-04 taaattagct atgaatcaatca aactctatt chr19:2529456-2529956 - 11 1.78e-04 CTCTCATCGA GTCCATAAATGA CACGGAAATG chr15:59885824-59886324 - 14 1.78e-04 CTCAAAAACA CTTCATAAATCA TGCAGCATGA chr21:38984949-38985449 - 7 1.78e-04 GCCAAACCAC AACAATATATCA TTTTAA chr1:214439363-214439863 - 22 1.94e-04 CTCAAGGTCA GCTCGTCAATCT TGTGCTTGCA chr17:68381052-68381552 - 76 1.94e-04 AACCTCTTAA AGCAATAAATAT TTAGCCACAG chr17:35589459-35589959 + 51 1.94e-04 CCTTAGGCCA TACCGTAAATCC TCAGAACAGC chr1:228903003-228903503 - 5 1.94e-04 CATGAGGATT GGGAATAAATGA CCAA chr9:95721114-95721614 + 7 2.10e-04 TAACTG TATCATAAAACA TTTGGAGGAC chr10:114525334-11452583 - 2 2.46e-04 CACGGCTCAT TGGTATAAATTA C chr15:70091851-70092351 + 52 2.46e-04 GATTGTGTGT GCCGATAAAACA CCAGTCAACC chr17:48492600-48493100 + 67 2.64e-04 CTTTTCAGCA CTTCGTAAATCA CCCATCCGCC chr5:137833406-137833906 + 52 2.64e-04 CATGATCACA TCACATAAATTA CTTCTCTAAT chr10:15796070-15796570 - 68 2.85e-04 GCCACTTTTC AGACGTAAAATA AATGGCCTGG chr9:14326308-14326808 + 12 2.85e-04 CATCTTCTAA CATAATAAATCT CAAGTGGTTT chr13:106096580-10609708 - 46 3.05e-04 GCACCTAATT TATCGTAAAACA TCTGACCACA chr5:174503744-174504244 - 7 3.29e-04 AGCAATTTGA ACCAATAAATAT CAAAGT chr17:8173222-8173722 + 76 4.91e-04 gattacgcag agacgttaatca cgtttcatgc chr8:37393040-37393540 + 44 6.64e-04 ATCCCCTTTC GGTAGTATATCT CTCTTCTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCHATAAATCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:70494068-70494568 7.4e-07 5_[-5]_83 chr14:100022752-10002325 7.4e-07 62_[-5]_26 chr6:158405261-158405761 8.8e-07 38_[-5]_50 chr7:123643757-123644257 9.8e-07 19_[-5]_69 chr6:25173814-25174314 1.4e-06 73_[+5]_15 chr16:87388430-87388930 1.6e-06 40_[-5]_48 chr19:38862526-38863026 1.6e-06 79_[+5]_9 chr6:136403046-136403546 2.8e-06 72_[-5]_16 chr14:89279580-89280080 2.8e-06 49_[+5]_39 chr1:87718323-87718823 3.1e-06 70_[+5]_18 chr3:72123966-72124466 3.1e-06 41_[-5]_47 chr5:99900476-99900976 3.1e-06 83_[-5]_5 chr19:38543936-38544436 3.1e-06 17_[-5]_71 chr10:72098736-72099236 3.1e-06 46_[-5]_42 chr8:37302571-37303071 4e-06 49_[+5]_39 chr15:71747488-71747988 4e-06 16_[+5]_72 chr5:57042472-57042972 5.4e-06 22_[+5]_66 chr10:132700571-13270107 5.4e-06 75_[-5]_13 chr12:1171601-1172101 6.5e-06 33_[+5]_55 chr1:233112912-233113412 7.6e-06 34_[-5]_54 chr1:184622175-184622675 7.6e-06 1_[-5]_87 chr5:175378418-175378918 9e-06 67_[+5]_21 chr1:41870130-41870630 9e-06 66_[-5]_22 chr6:2028603-2029103 9e-06 1_[-5]_87 chr16:79600660-79601160 9e-06 19_[+5]_69 chr1:3403743-3404243 9e-06 65_[+5]_23 chr1:41783158-41783658 1e-05 31_[+5]_57 chr18:62526105-62526605 1e-05 1_[+5]_87 chr1:220119015-220119515 1.2e-05 85_[-5]_3 chr1:228861053-228861553 1.2e-05 31_[+5]_57 chr12:12839802-12840302 1.2e-05 33_[-5]_55 chr9:81689719-81690219 1.4e-05 68_[+5]_20 chr6:150196030-150196530 1.4e-05 [+5]_88 chr11:72308447-72308947 1.4e-05 49_[-5]_39 chr5:90548030-90548530 1.4e-05 12_[+5]_76 chr12:54359085-54359585 1.6e-05 53_[+5]_35 chr19:34218183-34218683 1.6e-05 24_[-5]_64 chr5:124662174-124662674 1.6e-05 86_[+5]_2 chr13:112346389-11234688 1.8e-05 57_[+5]_31 chr22:35477880-35478380 1.8e-05 53_[+5]_35 chr5:17379027-17379527 1.8e-05 25_[+5]_63 chr10:75402385-75402885 2.1e-05 49_[-5]_39 chr14:96979558-96980058 2.1e-05 73_[+5]_15 chr1:54272958-54273458 2.1e-05 40_[-5]_48 chr11:11463347-11463847 2.1e-05 51_[+5]_37 chr3:61894890-61895390 2.1e-05 27_[+5]_61 chr4:91064406-91064906 2.1e-05 41_[+5]_47 chr17:8288217-8288717 2.4e-05 13_[+5]_75 chr18:42850146-42850646 2.4e-05 73_[+5]_15 chr4:80307286-80307786 2.7e-05 10_[-5]_78 chr1:81032864-81033364 2.7e-05 74_[-5]_14 chr15:67792456-67792956 3e-05 53_[+5]_35 chr10:7311286-7311786 3e-05 80_[+5]_8 chr6:37191853-37192353 3e-05 38_[-5]_50 chr19:47769459-47769959 3e-05 50_[+5]_38 chr7:157933489-157933989 3.4e-05 7_[-5]_81 chr7:157932453-157932953 3.4e-05 46_[-5]_42 chr1:169942357-169942857 3.8e-05 88_[-5] chr1:28246631-28247131 3.8e-05 84_[-5]_4 chr7:159146514-159147014 4.3e-05 24_[+5]_64 chr8:124077232-124077732 4.3e-05 60_[+5]_28 chr6:142885231-142885731 4.3e-05 77_[+5]_11 chr18:59455071-59455571 4.3e-05 18_[-5]_70 chr20:53609804-53610304 4.8e-05 13_[-5]_75 chr6:150418471-150418971 4.8e-05 79_[+5]_9 chr12:54033451-54033951 4.8e-05 9_[+5]_79 chr3:124429015-124429515 4.8e-05 39_[-5]_49 chr10:34320202-34320702 4.8e-05 58_[+5]_30 chr1:232678509-232679009 5.3e-05 82_[-5]_6 chr14:91284855-91285355 5.3e-05 71_[+5]_17 chr4:185912693-185913193 5.3e-05 54_[-5]_34 chr6:43321930-43322430 6e-05 18_[+5]_70 chr1:224623773-224624273 6e-05 51_[+5]_37 chr1:232704730-232705230 6e-05 67_[+5]_21 chr5:99020167-99020667 6e-05 70_[-5]_18 chr12:25333748-25334248 6.6e-05 77_[+5]_11 chr6:89297923-89298423 6.6e-05 10_[+5]_78 chr6:90137763-90138263 6.6e-05 81_[+5]_7 chr1:38783552-38784052 7.3e-05 81_[+5]_7 chr10:7302378-7302878 7.3e-05 47_[-5]_41 chr17:48590020-48590520 7.3e-05 72_[+5]_16 chr9:96618149-96618649 7.3e-05 75_[-5]_13 chr8:122969497-122969997 7.3e-05 50_[+5]_38 chr6:47134622-47135122 8.1e-05 49_[+5]_39 chr15:96361013-96361513 8.1e-05 37_[-5]_51 chr18:3409007-3409507 8.1e-05 83_[+5]_5 chr6:1809342-1809842 8.1e-05 51_[+5]_37 chr5:124735035-124735535 8.9e-05 74_[-5]_14 chr10:75379160-75379660 9.8e-05 8_[-5]_80 chr18:75212354-75212854 9.8e-05 26_[-5]_62 chr12:104060776-10406127 9.8e-05 53_[-5]_35 chr6:16849225-16849725 9.8e-05 85_[-5]_3 chr1:9802989-9803489 9.8e-05 77_[-5]_11 chr5:17305899-17306399 0.00011 47_[+5]_41 chr15:58332055-58332555 0.00011 7_[-5]_81 chr6:125050648-125051148 0.00011 46_[-5]_42 chr18:50629058-50629558 0.00011 43_[-5]_45 chr5:125409107-125409607 0.00011 60_[+5]_28 chr11:32890794-32891294 0.00011 40_[-5]_48 chr14:76486253-76486753 0.00012 57_[+5]_31 chr2:37376644-37377144 0.00012 2_[-5]_86 chr10:117461665-11746216 0.00012 60_[-5]_28 chr1:175470978-175471478 0.00013 14_[-5]_74 chr4:18021610-18022110 0.00013 49_[-5]_39 chr10:3220724-3221224 0.00013 23_[+5]_65 chr22:27212650-27213150 0.00013 76_[+5]_12 chr2:55843188-55843688 0.00013 58_[+5]_30 chr15:98896842-98897342 0.00015 73_[-5]_15 chr15:69143722-69144222 0.00015 70_[+5]_18 chr5:101288584-101289084 0.00015 70_[+5]_18 chr6:131816109-131816609 0.00015 46_[+5]_42 chr17:8222298-8222798 0.00016 62_[+5]_26 chr7:140396314-140396814 0.00016 81_[-5]_7 chr5:14264585-14265085 0.00016 78_[-5]_10 chr1:244347889-244348389 0.00016 10_[-5]_78 chr1:234700131-234700631 0.00018 81_[-5]_7 chr6:149704761-149705261 0.00018 79_[+5]_9 chr19:2529456-2529956 0.00018 10_[-5]_78 chr15:59885824-59886324 0.00018 13_[-5]_75 chr21:38984949-38985449 0.00018 6_[-5]_82 chr1:214439363-214439863 0.00019 21_[-5]_67 chr17:68381052-68381552 0.00019 75_[-5]_13 chr17:35589459-35589959 0.00019 50_[+5]_38 chr1:228903003-228903503 0.00019 4_[-5]_84 chr9:95721114-95721614 0.00021 6_[+5]_82 chr10:114525334-11452583 0.00025 1_[-5]_87 chr15:70091851-70092351 0.00025 51_[+5]_37 chr17:48492600-48493100 0.00026 66_[+5]_22 chr5:137833406-137833906 0.00026 51_[+5]_37 chr10:15796070-15796570 0.00028 67_[-5]_21 chr9:14326308-14326808 0.00028 11_[+5]_77 chr13:106096580-10609708 0.00031 45_[-5]_43 chr5:174503744-174504244 0.00033 6_[-5]_82 chr17:8173222-8173722 0.00049 75_[+5]_13 chr8:37393040-37393540 0.00066 43_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCHATAAATCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGCHATAAATCA width=12 seqs=135 chr15:70494068-70494568 ( 6) AGCAGTAAATCA 1 chr14:100022752-10002325 ( 63) AGCAGTAAATCA 1 chr6:158405261-158405761 ( 39) AGCTGTAAATCA 1 chr7:123643757-123644257 ( 20) ACCAATAAATCA 1 chr6:25173814-25174314 ( 74) GCCCATAAATCA 1 chr16:87388430-87388930 ( 41) GGCTGTAAATCA 1 chr19:38862526-38863026 ( 80) GGCTGTAAATCA 1 chr6:136403046-136403546 ( 73) GCCTATAAATCA 1 chr14:89279580-89280080 ( 50) GCCTATAAATCA 1 chr1:87718323-87718823 ( 71) AGCTATAAATCT 1 chr3:72123966-72124466 ( 42) ACCAGTAAATCA 1 chr5:99900476-99900976 ( 84) AGCTATAAATCT 1 chr19:38543936-38544436 ( 18) AGCAATCAATCA 1 chr10:72098736-72099236 ( 47) AGCTATAAATCT 1 chr8:37302571-37303071 ( 50) TGCAATAAATCA 1 chr15:71747488-71747988 ( 17) AGAAATAAATCA 1 chr5:57042472-57042972 ( 23) GCCAGTAAATCA 1 chr10:132700571-13270107 ( 76) ATCCATAAATCA 1 chr12:1171601-1172101 ( 34) GGAAATAAATCA 1 chr1:233112912-233113412 ( 35) AGCTGTAAATCT 1 chr1:184622175-184622675 ( 2) AGCTGTAAATCT 1 chr5:175378418-175378918 ( 68) GTCCATAAATCA 1 chr1:41870130-41870630 ( 67) GACAGTAAATCA 1 chr6:2028603-2029103 ( 2) ACACATAAATCA 1 chr16:79600660-79601160 ( 20) AGCTGTCAATCA 1 chr1:3403743-3404243 ( 66) ACACATAAATCA 1 chr1:41783158-41783658 ( 32) GGTTGTAAATCA 1 chr18:62526105-62526605 ( 2) GGGAATAAATCA 1 chr1:220119015-220119515 ( 86) AGCAATAAATCC 1 chr1:228861053-228861553 ( 32) GTCAATAAATCA 1 chr12:12839802-12840302 ( 34) GGCTGTAAATCT 1 chr9:81689719-81690219 ( 69) GGCTGTCAATCA 1 chr6:150196030-150196530 ( 1) AACAATAAATCT 1 chr11:72308447-72308947 ( 50) AGCAGTAAAACA 1 chr5:90548030-90548530 ( 13) AGTAATAAATCT 1 chr12:54359085-54359585 ( 54) GACCATAAATCT 1 chr19:34218183-34218683 ( 25) AGACATAAATCT 1 chr5:124662174-124662674 ( 87) GCCAATCAATCA 1 chr13:112346389-11234688 ( 58) GGCTATAAATTA 1 chr22:35477880-35478380 ( 54) GCAAATAAATCA 1 chr5:17379027-17379527 ( 26) TGTAATAAATCA 1 chr10:75402385-75402885 ( 50) TGACATAAATCA 1 chr14:96979558-96980058 ( 74) AAGCATAAATCA 1 chr1:54272958-54273458 ( 41) GAACATAAATCA 1 chr11:11463347-11463847 ( 52) AGTCGTAAATCT 1 chr3:61894890-61895390 ( 28) AGCAGTAAATTA 1 chr4:91064406-91064906 ( 42) TACTATAAATCA 1 chr17:8288217-8288717 ( 14) ACCTGTCAATCA 1 chr18:42850146-42850646 ( 74) GGACATAAATCT 1 chr4:80307286-80307786 ( 11) ACATGTAAATCA 1 chr1:81032864-81033364 ( 75) AATTGTAAATCA 1 chr15:67792456-67792956 ( 54) AGTTGTAAATCT 1 chr10:7311286-7311786 ( 81) AGCAATAAATGA 1 chr6:37191853-37192353 ( 39) CCCAATAAATCA 1 chr19:47769459-47769959 ( 51) ATCCATCAATCA 1 chr7:157933489-157933989 ( 8) AACTGTCAATCA 1 chr7:157932453-157932953 ( 47) AACTGTCAATCA 1 chr1:169942357-169942857 ( 89) TGCAGTAAATCT 1 chr1:28246631-28247131 ( 85) ATCAATCAATCA 1 chr7:159146514-159147014 ( 25) ATCTATCAATCA 1 chr8:124077232-124077732 ( 61) GGCAATAAATGA 1 chr6:142885231-142885731 ( 78) TCCCATCAATCA 1 chr18:59455071-59455571 ( 19) GAGTATAAATCA 1 chr20:53609804-53610304 ( 14) TCTTATAAATCA 1 chr6:150418471-150418971 ( 80) AGATGTCAATCA 1 chr12:54033451-54033951 ( 10) GGCCATAAATTT 1 chr3:124429015-124429515 ( 40) GGTCATAAATCC 1 chr10:34320202-34320702 ( 59) TATCATAAATCA 1 chr1:232678509-232679009 ( 83) GGCCATCAATTA 1 chr14:91284855-91285355 ( 72) AGCAATCAATCC 1 chr4:185912693-185913193 ( 55) ACCCATAAAACT 1 chr6:43321930-43322430 ( 19) AGGTATAAAACA 1 chr1:224623773-224624273 ( 52) ACTAATAAAACA 1 chr1:232704730-232705230 ( 68) ATCAATAAAACA 1 chr5:99020167-99020667 ( 71) AGCCATATATCA 1 chr12:25333748-25334248 ( 78) ATCCATAAATTA 1 chr6:89297923-89298423 ( 11) GGGCGTCAATCA 1 chr6:90137763-90138263 ( 82) AATCATAAAACA 1 chr1:38783552-38784052 ( 82) ATCTGTCAATCA 1 chr10:7302378-7302878 ( 48) TGTAATCAATCA 1 chr17:48590020-48590520 ( 73) AACCATAAAACT 1 chr9:96618149-96618649 ( 76) ACTCATAAATCC 1 chr8:122969497-122969997 ( 51) GATAATCAATCA 1 chr6:47134622-47135122 ( 50) AGGTATAAATTA 1 chr15:96361013-96361513 ( 38) ACCTGTCAATCT 1 chr18:3409007-3409507 ( 84) AGCTATAAAATA 1 chr6:1809342-1809842 ( 52) GGATATAAATTA 1 chr5:124735035-124735535 ( 75) CGCTGTAAATCT 1 chr10:75379160-75379660 ( 9) CGAAGTAAATCA 1 chr18:75212354-75212854 ( 27) GGCGATCAATCA 1 chr12:104060776-10406127 ( 54) AGCTGTCAATCC 1 chr6:16849225-16849725 ( 86) ACTAGTAAAACA 1 chr1:9802989-9803489 ( 78) TCCCATAAATCC 1 chr5:17305899-17306399 ( 48) ACAAATAAATTA 1 chr15:58332055-58332555 ( 8) TAGAATAAATCA 1 chr6:125050648-125051148 ( 47) TCTCATAAATCT 1 chr18:50629058-50629558 ( 44) GGCTATAAACCA 1 chr5:125409107-125409607 ( 61) AAAAATAAAACA 1 chr11:32890794-32891294 ( 41) GGCAATAAAACC 1 chr14:76486253-76486753 ( 58) GATCATAAATTA 1 chr2:37376644-37377144 ( 3) TGTCATAAATTA 1 chr10:117461665-11746216 ( 61) AGTCGTAAAACT 1 chr1:175470978-175471478 ( 15) GGACATAAATGA 1 chr4:18021610-18022110 ( 50) ACGTGTCAATCA 1 chr10:3220724-3221224 ( 24) GCATGTCAATCA 1 chr22:27212650-27213150 ( 77) CCCCATAAAACA 1 chr2:55843188-55843688 ( 59) GACTATAAAACT 1 chr15:98896842-98897342 ( 74) AGGAATAAATGA 1 chr15:69143722-69144222 ( 71) GAACATAAATTA 1 chr5:101288584-101289084 ( 71) AACCATAAAATA 1 chr6:131816109-131816609 ( 47) AACCATAAAATA 1 chr17:8222298-8222798 ( 63) GCGTGTCAATCA 1 chr7:140396314-140396814 ( 82) GATTATAAATCC 1 chr5:14264585-14265085 ( 79) AGTGATAAATCT 1 chr1:244347889-244348389 ( 11) AGCCATAAACCT 1 chr1:234700131-234700631 ( 82) AGTAATAAATAA 1 chr6:149704761-149705261 ( 80) ATGAATCAATCA 1 chr19:2529456-2529956 ( 11) GTCCATAAATGA 1 chr15:59885824-59886324 ( 14) CTTCATAAATCA 1 chr21:38984949-38985449 ( 7) AACAATATATCA 1 chr1:214439363-214439863 ( 22) GCTCGTCAATCT 1 chr17:68381052-68381552 ( 76) AGCAATAAATAT 1 chr17:35589459-35589959 ( 51) TACCGTAAATCC 1 chr1:228903003-228903503 ( 5) GGGAATAAATGA 1 chr9:95721114-95721614 ( 7) TATCATAAAACA 1 chr10:114525334-11452583 ( 2) TGGTATAAATTA 1 chr15:70091851-70092351 ( 52) GCCGATAAAACA 1 chr17:48492600-48493100 ( 67) CTTCGTAAATCA 1 chr5:137833406-137833906 ( 52) TCACATAAATTA 1 chr10:15796070-15796570 ( 68) AGACGTAAAATA 1 chr9:14326308-14326808 ( 12) CATAATAAATCT 1 chr13:106096580-10609708 ( 46) TATCGTAAAACA 1 chr5:174503744-174504244 ( 7) ACCAATAAATAT 1 chr17:8173222-8173722 ( 76) AGACGTTAATCA 1 chr8:37393040-37393540 ( 44) GGTAGTATATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCHATAAATCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 9.98614 E= 6.6e-011 86 -213 49 -103 -45 2 106 -150 -81 123 -124 -35 29 59 -335 15 132 -1372 49 -1372 -1372 -1372 -1372 187 155 -24 -1372 -520 184 -1372 -1372 -362 187 -1372 -1372 -1372 -88 -394 -1372 162 -362 183 -235 -112 140 -177 -1372 -35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCHATAAATCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 135 E= 6.6e-011 0.496296 0.051852 0.318519 0.133333 0.200000 0.229630 0.474074 0.096296 0.155556 0.533333 0.096296 0.214815 0.333333 0.340741 0.022222 0.303704 0.681481 0.000000 0.318519 0.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.192593 0.000000 0.007407 0.977778 0.000000 0.000000 0.022222 1.000000 0.000000 0.000000 0.000000 0.148148 0.014815 0.000000 0.837037 0.022222 0.807407 0.044444 0.125926 0.718519 0.066667 0.000000 0.214815 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCHATAAATCA MEME-5 regular expression -------------------------------------------------------------------------------- [AG][GCA][CT][CAT][AG]TAAATC[AT] -------------------------------------------------------------------------------- Time 1609.56 secs. ******************************************************************************** ******************************************************************************** MOTIF ABAAAARHAAACAAVA MEME-6 width = 16 sites = 53 llr = 559 E-value = 3.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif ABAAAARHAAACAAVA MEME-6 Description -------------------------------------------------------------------------------- Simplified A 81989655aa918847 pos.-specific C :41::123::181132 probability G 24:::12:::::::2: matrix T :2:112:3:::1:111 bits 2.1 1.9 1.7 ** 1.5 ** Relative 1.3 * * **** Entropy 1.1 * * * ***** (15.2 bits) 0.9 * *** ****** 0.6 * *** ****** * 0.4 * ************ * 0.2 **************** 0.0 ---------------- Multilevel AGAAAAAAAAACAAAA consensus GC GC C sequence CT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABAAAARHAAACAAVA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr12:31749246-31749746 + 80 3.50e-08 aagcaattat agaaaagcaaacaaga gaaca chr10:50463960-50464460 + 25 5.72e-08 ttttaccaca ataaaaacaaACAAga gattatcctg chr18:3409007-3409507 + 66 6.89e-08 gtctctaaaa acaaaacaaaacaaaC AAAGCTATAA chr19:40646043-40646543 - 83 2.34e-07 GA AGAAAAAAAAAAAAAA GATCCCCTGA chr17:75368271-75368771 - 51 3.53e-07 AAAAAACAAC AAAAAAAAAAACAAAC GCCTGACGCA chr8:122969497-122969997 - 73 4.57e-07 GCACTCCAGG AGAAAGGAAAACAAAC ACTGAGAGAG chr16:22728338-22728838 - 42 5.85e-07 GCAGATTAAA ATATAACAAAACAAAA AGGTTCCATT chr5:125277458-125277958 - 31 6.59e-07 GATTAGTCAG AGAAAAACAAATAAGA ATGGGGGAAG chr6:142885231-142885731 + 53 8.44e-07 GAGGTCACAG ATAAAGCTAAACAACA AGCCGTGGTT chr1:110647250-110647750 + 23 8.44e-07 gaagtttcct ggaataataaacaaca cttctaaaac chr1:151494689-151495189 - 81 9.48e-07 GGGC AGAAAAAAAAAAAAAC TTCCCACCCA chr5:96745693-96746193 - 79 1.06e-06 CACCAG AGAAAAGTAAATAAAA GATCCTTTGA chr6:131816109-131816609 + 71 1.06e-06 CCCCAAACAA GAAAAAATAAACAAGA AACCTTTTAG chr4:119730088-119730588 + 55 1.19e-06 CATTAGTCAG GCAAAAGCAAACATAA ACAATGTTTG chr5:99900476-99900976 - 18 1.88e-06 TTTATGGAGT AGAAAAGAAAACAATT CACAAATTGG chr3:130425432-130425932 - 72 2.09e-06 ACAATTACAC AGAAAAATAAACATTA CACAAAAGAA chr22:40711461-40711961 + 4 2.33e-06 caa acaaaacagaacaaaa aaaCCAagta chr20:44728721-44729221 + 48 2.33e-06 ctttcactca acataataaaacaaaa ggaatttaat chr4:156931253-156931753 + 69 2.33e-06 TAACTATCCA AGAAAAACAACCCACA GTAATCTTCA chr9:18976688-18977188 + 32 2.59e-06 CCACAAAACC ACAAACCAAaacaaat gtgaagcact chr6:107659003-107659503 + 21 2.59e-06 GTATGGACAA ACCAATGAAAACAAGA GGGAAAGTGA chr8:71496041-71496541 - 76 2.59e-06 GGGCTGCCA ACAAAAATAAACCTGA CTGTGATTAA chr17:71438649-71439149 - 24 2.87e-06 ACGCAGCTTA ACAATCACAAACAACA GCACAGTTAA chr1:46643293-46643793 + 84 3.90e-06 TTGTGACCAT ACATTTAAAAACAAAA T chr2:88330133-88330633 + 49 4.31e-06 AGCAAGGGGG AGAAATGTAACCAAGA ACTATCTCTT chr19:34218183-34218683 - 57 5.22e-06 CCTGGGTTTG AGAAAACAAACCACAA AACCCCACAG chrX:38060435-38060935 - 18 5.22e-06 CATGCTCCTG ACAGAAGAAAACCACA ATTGTTCTAC chr6:82072025-82072525 + 33 5.22e-06 ggggagagat gcaaaaataaacagca gcaccaggga chr11:32890794-32891294 + 3 6.32e-06 tg acataaacaaactaca taatggtgtg chr12:85834350-85834850 + 45 6.32e-06 AATTGCTAAA GCAaaacaaaaaaacc tcaaacaaac chr1:234723925-234724425 + 50 7.62e-06 gtggagagag agagaAAAAAACCACC CTGCTGGCAA chr1:210236407-210236907 + 57 7.62e-06 TGTATAATTT GGAAAAGAAAGCAAGA ACTGGGCCCT chr10:75294703-75295203 - 33 7.62e-06 GTGCTGACAG AGAAATATACACAACA GCGTAACCAA chr6:43321930-43322430 + 38 8.33e-06 acactttgag atgaataaaaacaaaa ccacaacact chr13:46674968-46675468 + 65 8.33e-06 ACAGGCAGCT GTAAAAACAAACACAC TGTTAGAACA chr7:120806644-120807144 + 66 8.33e-06 AATGCCCATA ACACATAAAAACAAAT CAGGCATGAC chr19:33473622-33474122 + 81 9.13e-06 GCTCCTTGAG AGAATGGAAAACAATA AAAC chr5:125409107-125409607 - 8 9.13e-06 CGCCATTTGA GGAAACCCAAACCAAA TACAGCT chr10:44752846-44753346 - 58 1.00e-05 TGTTCAATTC ACCAATCTAAACAACC TTGGCCATGG chr17:67978504-67979004 + 83 1.00e-05 AATTTGTTTA AGACAGAAAAACATAA GG chr4:31089744-31090244 + 84 1.09e-05 GATGTCGTGT ACATAGGCAAACCACA A chr1:244347889-244348389 + 43 1.09e-05 ATTATAACTA ACATTTGCAAACAACA AAGTGCTGTC chr15:71747488-71747988 + 49 1.20e-05 atgactcaga aacaaaccaaacaaac cagtgtcctc chr6:139152292-139152792 + 22 1.42e-05 CCTACTGTAA GCAAAGAAAAACATGT TTAACTGAAT chr5:38782954-38783454 - 27 1.55e-05 AATTGTCCTT GCAAAGATAAACAAAG ACCTTCTGAA chr17:45320812-45321312 - 5 1.68e-05 TGCTGACTAA GGCAATAAAAACCAGA ATAT chr15:89498160-89498660 - 48 1.83e-05 AGCATGATTT GTAATACTAAACAAAT AAAAAATGAC chr5:69521094-69521594 - 63 1.99e-05 AGCGTTATCT GTAATAGTAAACAACT GAACACAATT chr1:6404541-6405041 + 3 1.99e-05 at aaataaataaataaaA GTGACATGAC chr7:116218165-116218665 - 83 2.15e-05 AT ATAAAAACAAAAATCC ACCTAACATC chr13:79918546-79919046 - 23 2.15e-05 CTTCATGTTT ATAAAAACAAACTCCA TTAACATGCC chr16:14013440-14013940 - 20 2.52e-05 AATGGCCAAG AGAAAACAAAATATGT CATACATGTG chr22:30196386-30196886 + 5 3.20e-05 CCTC ATAAATTAAACCAAGA AACAGAGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABAAAARHAAACAAVA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:31749246-31749746 3.5e-08 79_[+6]_5 chr10:50463960-50464460 5.7e-08 24_[+6]_60 chr18:3409007-3409507 6.9e-08 65_[+6]_19 chr19:40646043-40646543 2.3e-07 82_[-6]_2 chr17:75368271-75368771 3.5e-07 50_[-6]_34 chr8:122969497-122969997 4.6e-07 72_[-6]_12 chr16:22728338-22728838 5.8e-07 41_[-6]_43 chr5:125277458-125277958 6.6e-07 30_[-6]_54 chr6:142885231-142885731 8.4e-07 52_[+6]_32 chr1:110647250-110647750 8.4e-07 22_[+6]_62 chr1:151494689-151495189 9.5e-07 80_[-6]_4 chr5:96745693-96746193 1.1e-06 78_[-6]_6 chr6:131816109-131816609 1.1e-06 70_[+6]_14 chr4:119730088-119730588 1.2e-06 54_[+6]_30 chr5:99900476-99900976 1.9e-06 17_[-6]_67 chr3:130425432-130425932 2.1e-06 71_[-6]_13 chr22:40711461-40711961 2.3e-06 3_[+6]_81 chr20:44728721-44729221 2.3e-06 47_[+6]_37 chr4:156931253-156931753 2.3e-06 68_[+6]_16 chr9:18976688-18977188 2.6e-06 31_[+6]_53 chr6:107659003-107659503 2.6e-06 20_[+6]_64 chr8:71496041-71496541 2.6e-06 75_[-6]_9 chr17:71438649-71439149 2.9e-06 23_[-6]_61 chr1:46643293-46643793 3.9e-06 83_[+6]_1 chr2:88330133-88330633 4.3e-06 48_[+6]_36 chr19:34218183-34218683 5.2e-06 56_[-6]_28 chrX:38060435-38060935 5.2e-06 17_[-6]_67 chr6:82072025-82072525 5.2e-06 32_[+6]_52 chr11:32890794-32891294 6.3e-06 2_[+6]_82 chr12:85834350-85834850 6.3e-06 44_[+6]_40 chr1:234723925-234724425 7.6e-06 49_[+6]_35 chr1:210236407-210236907 7.6e-06 56_[+6]_28 chr10:75294703-75295203 7.6e-06 32_[-6]_52 chr6:43321930-43322430 8.3e-06 37_[+6]_47 chr13:46674968-46675468 8.3e-06 64_[+6]_20 chr7:120806644-120807144 8.3e-06 65_[+6]_19 chr19:33473622-33474122 9.1e-06 80_[+6]_4 chr5:125409107-125409607 9.1e-06 7_[-6]_77 chr10:44752846-44753346 1e-05 57_[-6]_27 chr17:67978504-67979004 1e-05 82_[+6]_2 chr4:31089744-31090244 1.1e-05 83_[+6]_1 chr1:244347889-244348389 1.1e-05 42_[+6]_42 chr15:71747488-71747988 1.2e-05 48_[+6]_36 chr6:139152292-139152792 1.4e-05 21_[+6]_63 chr5:38782954-38783454 1.5e-05 26_[-6]_58 chr17:45320812-45321312 1.7e-05 4_[-6]_80 chr15:89498160-89498660 1.8e-05 47_[-6]_37 chr5:69521094-69521594 2e-05 62_[-6]_22 chr1:6404541-6405041 2e-05 2_[+6]_82 chr7:116218165-116218665 2.2e-05 82_[-6]_2 chr13:79918546-79919046 2.2e-05 22_[-6]_62 chr16:14013440-14013940 2.5e-05 19_[-6]_65 chr22:30196386-30196886 3.2e-05 4_[+6]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABAAAARHAAACAAVA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ABAAAARHAAACAAVA width=16 seqs=53 chr12:31749246-31749746 ( 80) AGAAAAGCAAACAAGA 1 chr10:50463960-50464460 ( 25) ATAAAAACAAACAAGA 1 chr18:3409007-3409507 ( 66) ACAAAACAAAACAAAC 1 chr19:40646043-40646543 ( 83) AGAAAAAAAAAAAAAA 1 chr17:75368271-75368771 ( 51) AAAAAAAAAAACAAAC 1 chr8:122969497-122969997 ( 73) AGAAAGGAAAACAAAC 1 chr16:22728338-22728838 ( 42) ATATAACAAAACAAAA 1 chr5:125277458-125277958 ( 31) AGAAAAACAAATAAGA 1 chr6:142885231-142885731 ( 53) ATAAAGCTAAACAACA 1 chr1:110647250-110647750 ( 23) GGAATAATAAACAACA 1 chr1:151494689-151495189 ( 81) AGAAAAAAAAAAAAAC 1 chr5:96745693-96746193 ( 79) AGAAAAGTAAATAAAA 1 chr6:131816109-131816609 ( 71) GAAAAAATAAACAAGA 1 chr4:119730088-119730588 ( 55) GCAAAAGCAAACATAA 1 chr5:99900476-99900976 ( 18) AGAAAAGAAAACAATT 1 chr3:130425432-130425932 ( 72) AGAAAAATAAACATTA 1 chr22:40711461-40711961 ( 4) ACAAAACAGAACAAAA 1 chr20:44728721-44729221 ( 48) ACATAATAAAACAAAA 1 chr4:156931253-156931753 ( 69) AGAAAAACAACCCACA 1 chr9:18976688-18977188 ( 32) ACAAACCAAAACAAAT 1 chr6:107659003-107659503 ( 21) ACCAATGAAAACAAGA 1 chr8:71496041-71496541 ( 76) ACAAAAATAAACCTGA 1 chr17:71438649-71439149 ( 24) ACAATCACAAACAACA 1 chr1:46643293-46643793 ( 84) ACATTTAAAAACAAAA 1 chr2:88330133-88330633 ( 49) AGAAATGTAACCAAGA 1 chr19:34218183-34218683 ( 57) AGAAAACAAACCACAA 1 chrX:38060435-38060935 ( 18) ACAGAAGAAAACCACA 1 chr6:82072025-82072525 ( 33) GCAAAAATAAACAGCA 1 chr11:32890794-32891294 ( 3) ACATAAACAAACTACA 1 chr12:85834350-85834850 ( 45) GCAAAACAAAAAAACC 1 chr1:234723925-234724425 ( 50) AGAGAAAAAAACCACC 1 chr1:210236407-210236907 ( 57) GGAAAAGAAAGCAAGA 1 chr10:75294703-75295203 ( 33) AGAAATATACACAACA 1 chr6:43321930-43322430 ( 38) ATGAATAAAAACAAAA 1 chr13:46674968-46675468 ( 65) GTAAAAACAAACACAC 1 chr7:120806644-120807144 ( 66) ACACATAAAAACAAAT 1 chr19:33473622-33474122 ( 81) AGAATGGAAAACAATA 1 chr5:125409107-125409607 ( 8) GGAAACCCAAACCAAA 1 chr10:44752846-44753346 ( 58) ACCAATCTAAACAACC 1 chr17:67978504-67979004 ( 83) AGACAGAAAAACATAA 1 chr4:31089744-31090244 ( 84) ACATAGGCAAACCACA 1 chr1:244347889-244348389 ( 43) ACATTTGCAAACAACA 1 chr15:71747488-71747988 ( 49) AACAAACCAAACAAAC 1 chr6:139152292-139152792 ( 22) GCAAAGAAAAACATGT 1 chr5:38782954-38783454 ( 27) GCAAAGATAAACAAAG 1 chr17:45320812-45321312 ( 5) GGCAATAAAAACCAGA 1 chr15:89498160-89498660 ( 48) GTAATACTAAACAAAT 1 chr5:69521094-69521594 ( 63) GTAATAGTAAACAACT 1 chr1:6404541-6405041 ( 3) AAATAAATAAATAAAA 1 chr7:116218165-116218665 ( 83) ATAAAAACAAAAATCC 1 chr13:79918546-79919046 ( 23) ATAAAAACAAACTCCA 1 chr16:14013440-14013940 ( 20) AGAAAACAAAATATGT 1 chr22:30196386-30196886 ( 5) ATAAATTAAACCAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABAAAARHAAACAAVA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.0891 E= 3.2e-008 147 -1237 11 -1237 -185 66 73 -53 173 -159 -359 -1237 154 -259 -259 -105 167 -1237 -1237 -105 119 -200 -78 -53 85 0 11 -285 79 22 -1237 -5 185 -1237 -359 -1237 185 -359 -1237 -1237 173 -159 -359 -1237 -185 190 -1237 -185 160 -78 -1237 -285 154 -200 -359 -105 60 41 0 -227 127 -27 -359 -105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABAAAARHAAACAAVA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 53 E= 3.2e-008 0.754717 0.000000 0.245283 0.000000 0.075472 0.358491 0.377358 0.188679 0.905660 0.075472 0.018868 0.000000 0.792453 0.037736 0.037736 0.132075 0.867925 0.000000 0.000000 0.132075 0.622642 0.056604 0.132075 0.188679 0.490566 0.226415 0.245283 0.037736 0.471698 0.264151 0.000000 0.264151 0.981132 0.000000 0.018868 0.000000 0.981132 0.018868 0.000000 0.000000 0.905660 0.075472 0.018868 0.000000 0.075472 0.849057 0.000000 0.075472 0.830189 0.132075 0.000000 0.037736 0.792453 0.056604 0.018868 0.132075 0.415094 0.301887 0.226415 0.056604 0.660377 0.188679 0.018868 0.132075 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ABAAAARHAAACAAVA MEME-6 regular expression -------------------------------------------------------------------------------- [AG][GC]AAAA[AGC][ACT]AAACAA[ACG]A -------------------------------------------------------------------------------- Time 1874.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 width = 42 sites = 3 llr = 160 E-value = 8.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 Description -------------------------------------------------------------------------------- Simplified A :::a::aa::7:::aa7:::aa:a::::aaa::a:7aaa7:: pos.-specific C :::::::::::a:::::aa3::::a7:::::a:::::::::: probability G :aa:::::aa3:::::3:::::a::3:a:::::::3:::::: matrix T a:::aa::::::aa:::::7::::::a:::::a:a::::3aa bits 2.1 ** ** * ** * * * * 1.9 ********** ***** ** ***** ********* *** ** 1.7 ********** ***** ** ***** ********* *** ** 1.5 ********** ***** ** ***** ********* *** ** Relative 1.3 ********** ***** ** *************** *** ** Entropy 1.1 *************************************** ** (76.7 bits) 0.9 ****************************************** 0.6 ****************************************** 0.4 ****************************************** 0.2 ****************************************** 0.0 ------------------------------------------ Multilevel TGGATTAAGGACTTAAACCTAAGACCTGAAACTATAAAAATT consensus G G C G G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------ chr2:156781589-156782089 + 2 2.28e-25 a tggattaaggacttaaacctaagacctgaaactataaaaatt ctagaagata chr1:223518477-223518977 + 6 2.38e-24 caaaa tggattaaggacttaagcccaagacctgaaactataaaaatt ctagaagata chr5:59303274-59303774 - 32 9.39e-24 CAACTCAAGA TGGATTAAGGGCTTAAACCTAAGACGTGAAACTATGAAATTT TAGAAGATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:156781589-156782089 2.3e-25 1_[+7]_57 chr1:223518477-223518977 2.4e-24 5_[+7]_53 chr5:59303274-59303774 9.4e-24 31_[-7]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT width=42 seqs=3 chr2:156781589-156782089 ( 2) TGGATTAAGGACTTAAACCTAAGACCTGAAACTATAAAAATT 1 chr1:223518477-223518977 ( 6) TGGATTAAGGACTTAAGCCCAAGACCTGAAACTATAAAAATT 1 chr5:59303274-59303774 ( 32) TGGATTAAGGGCTTAAACCTAAGACGTGAAACTATGAAATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 42 n= 35400 bayes= 13.9739 E= 8.2e-002 -823 -823 -823 187 -823 -823 214 -823 -823 -823 214 -823 187 -823 -823 -823 -823 -823 -823 187 -823 -823 -823 187 187 -823 -823 -823 187 -823 -823 -823 -823 -823 214 -823 -823 -823 214 -823 129 -823 55 -823 -823 214 -823 -823 -823 -823 -823 187 -823 -823 -823 187 187 -823 -823 -823 187 -823 -823 -823 129 -823 55 -823 -823 214 -823 -823 -823 214 -823 -823 -823 55 -823 129 187 -823 -823 -823 187 -823 -823 -823 -823 -823 214 -823 187 -823 -823 -823 -823 214 -823 -823 -823 155 55 -823 -823 -823 -823 187 -823 -823 214 -823 187 -823 -823 -823 187 -823 -823 -823 187 -823 -823 -823 -823 214 -823 -823 -823 -823 -823 187 187 -823 -823 -823 -823 -823 -823 187 129 -823 55 -823 187 -823 -823 -823 187 -823 -823 -823 187 -823 -823 -823 129 -823 -823 29 -823 -823 -823 187 -823 -823 -823 187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 42 nsites= 3 E= 8.2e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATTAAGGRCTTAARCCYAAGACSTGAAACTATRAAAWTT MEME-7 regular expression -------------------------------------------------------------------------------- TGGATTAAGG[AG]CTTAA[AG]CC[TC]AAGAC[CG]TGAAACTAT[AG]AAA[AT]TT -------------------------------------------------------------------------------- Time 2131.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GRVAATGASRTGACAGGKGAB MEME-8 width = 21 sites = 14 llr = 217 E-value = 3.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRVAATGASRTGACAGGKGAB MEME-8 Description -------------------------------------------------------------------------------- Simplified A :42671:a:41:7:a1:1:9: pos.-specific C 114::11:5::119:211::3 probability G 86413:9:351911:783913 matrix T 1:12:9::219:1:::151:4 bits 2.1 1.9 * * 1.7 * * * 1.5 ** * ** * Relative 1.3 ** * ** ** Entropy 1.1 * **** ** **** ** (22.4 bits) 0.9 ** **** ** **** ** 0.6 ** ************** ** 0.4 ** ************** *** 0.2 ********************* 0.0 --------------------- Multilevel GGCAATGACGTGACAGGTGAT consensus AGTG GA C G C sequence A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVAATGASRTGACAGGKGAB MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr12:117128158-11712865 - 74 5.83e-12 ACAGGT GACAATGACGTGACAGGTGAC AATGACGTGA chr8:144456660-144457160 + 65 7.54e-10 GGCATCATGA GGGAATGACATCACAGGGGAT GACATTACGG chr20:52974036-52974536 - 52 1.95e-09 ATAGATCAAA GGCAGCGAGATGACAGGTGAT CAATCAAATG chr6:27495557-27496057 - 5 2.74e-09 GATAGATTGG TGAAATGACGTGTCAGGTGAC GTGT chr18:3966565-3967065 + 31 4.21e-09 ctggattaac gagtatgaggtgagaggggac gtctgagcta chr11:27209512-27210012 - 6 8.60e-09 GACTGGGGCA GGGTATGACTTGCCAGGGGAG GGTTT chr9:133977341-133977841 + 40 1.67e-08 ACTTACCCAG GCAAATGACATGACAGGCGGT CCATCCCCAT chr17:74514037-74514537 + 10 1.67e-08 catgtgatg ggtgatcatgtgacaggtgat gtcatgtgat chr17:7836709-7837209 - 49 8.30e-08 GAAGGGAGAG GGGAAAGAGATGGCACGGGAC TGGAACTGGA chr7:151709611-151710111 + 42 2.14e-07 GACATTGAGT GACAGTGACGAGTGACGTGAG ACTGACATTG chr10:121310098-12131059 - 50 2.45e-07 GTTACAAGCT CGATATGAGGTGACAGTTTAG TGGTCAGTCC chr10:23408441-23408941 - 60 3.41e-07 ACCAGATGGT TAGAGTGATATGACACGCTAG AGTTTTAACA chr12:117125729-11712622 - 19 4.97e-07 TAGGCGACAT GACAGTGACGTGACAACAGGT GATGGTTCAG chr17:68019645-68020145 - 4 4.97e-07 TGGAAGAGAG GGCGATCATTGGACAGTTGAT TAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVAATGASRTGACAGGKGAB MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:117128158-11712865 5.8e-12 73_[-8]_6 chr8:144456660-144457160 7.5e-10 64_[+8]_15 chr20:52974036-52974536 1.9e-09 51_[-8]_28 chr6:27495557-27496057 2.7e-09 4_[-8]_75 chr18:3966565-3967065 4.2e-09 30_[+8]_49 chr11:27209512-27210012 8.6e-09 5_[-8]_74 chr9:133977341-133977841 1.7e-08 39_[+8]_40 chr17:74514037-74514537 1.7e-08 9_[+8]_70 chr17:7836709-7837209 8.3e-08 48_[-8]_31 chr7:151709611-151710111 2.1e-07 41_[+8]_38 chr10:121310098-12131059 2.5e-07 49_[-8]_30 chr10:23408441-23408941 3.4e-07 59_[-8]_20 chr12:117125729-11712622 5e-07 18_[-8]_61 chr17:68019645-68020145 5e-07 3_[-8]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVAATGASRTGACAGGKGAB MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRVAATGASRTGACAGGKGAB width=21 seqs=14 chr12:117128158-11712865 ( 74) GACAATGACGTGACAGGTGAC 1 chr8:144456660-144457160 ( 65) GGGAATGACATCACAGGGGAT 1 chr20:52974036-52974536 ( 52) GGCAGCGAGATGACAGGTGAT 1 chr6:27495557-27496057 ( 5) TGAAATGACGTGTCAGGTGAC 1 chr18:3966565-3967065 ( 31) GAGTATGAGGTGAGAGGGGAC 1 chr11:27209512-27210012 ( 6) GGGTATGACTTGCCAGGGGAG 1 chr9:133977341-133977841 ( 40) GCAAATGACATGACAGGCGGT 1 chr17:74514037-74514537 ( 10) GGTGATCATGTGACAGGTGAT 1 chr17:7836709-7837209 ( 49) GGGAAAGAGATGGCACGGGAC 1 chr7:151709611-151710111 ( 42) GACAGTGACGAGTGACGTGAG 1 chr10:121310098-12131059 ( 50) CGATATGAGGTGACAGTTTAG 1 chr10:23408441-23408941 ( 60) TAGAGTGATATGACACGCTAG 1 chr12:117125729-11712622 ( 19) GACAGTGACGTGACAACAGGT 1 chr17:68019645-68020145 ( 4) GGCGATCATTGGACAGTTGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVAATGASRTGACAGGKGAB MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 12.3488 E= 3.2e+002 -1045 -167 179 -93 39 -167 133 -1045 -35 65 65 -193 124 -1045 -67 -35 139 -1045 33 -1045 -193 -167 -1045 165 -1045 -67 192 -1045 187 -1045 -1045 -1045 -1045 114 33 -35 39 -1045 114 -93 -193 -1045 -167 165 -1045 -167 203 -1045 139 -167 -167 -93 -1045 192 -67 -1045 187 -1045 -1045 -1045 -193 -8 165 -1045 -1045 -167 179 -93 -193 -67 33 87 -1045 -1045 192 -93 165 -1045 -67 -1045 -1045 33 33 65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVAATGASRTGACAGGKGAB MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 14 E= 3.2e+002 0.000000 0.071429 0.785714 0.142857 0.357143 0.071429 0.571429 0.000000 0.214286 0.357143 0.357143 0.071429 0.642857 0.000000 0.142857 0.214286 0.714286 0.000000 0.285714 0.000000 0.071429 0.071429 0.000000 0.857143 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.285714 0.214286 0.357143 0.000000 0.500000 0.142857 0.071429 0.000000 0.071429 0.857143 0.000000 0.071429 0.928571 0.000000 0.714286 0.071429 0.071429 0.142857 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.071429 0.214286 0.714286 0.000000 0.000000 0.071429 0.785714 0.142857 0.071429 0.142857 0.285714 0.500000 0.000000 0.000000 0.857143 0.142857 0.857143 0.000000 0.142857 0.000000 0.000000 0.285714 0.285714 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVAATGASRTGACAGGKGAB MEME-8 regular expression -------------------------------------------------------------------------------- G[GA][CGA][AT][AG]TGA[CGT][GA]TGACA[GC]G[TG]GA[TCG] -------------------------------------------------------------------------------- Time 2392.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 width = 28 sites = 10 llr = 202 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 Description -------------------------------------------------------------------------------- Simplified A :a:::71629:18114913673:84:1: pos.-specific C ::116::1:::::1::11:13::11:11 probability G a:564:518:191256::73:1913167 matrix T ::43:342:19:164::8:::61:2922 bits 2.1 * 1.9 ** 1.7 ** * * 1.5 ** *** * * * Relative 1.3 ** **** * * * * Entropy 1.1 ** ** ***** **** * ** * (29.1 bits) 0.9 ** *** ***** **** * ** * * 0.6 ******* ***** ********** * * 0.4 ************************ *** 0.2 **************************** 0.0 ---------------------------- Multilevel GAGGCAGAGATGATGGATGAATGAATGG consensus TTGTTTA GTA AGCA G TT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chr22:37072639-37073139 + 30 7.36e-14 atggatggat gatgcatggatgatggatggatgaatgg atggatggat chr19:47769459-47769959 - 11 2.59e-13 ATGATGGATG GATGGATAGATGATGGATGGATGGATGG ATGATTGATG chr10:1498784-1499284 - 32 8.58e-11 GACGAGTAAT GAGTGAATGATGAGTAATGAATGAGTGT TGAGTAATGA chr10:1499589-1500089 - 41 1.04e-10 GATGAATGAT GAGTGAGCAATGAGTAATGAATGAGTGT TAAGTGATGA chr16:73070531-73071031 - 35 3.00e-10 GCGCTGGAGA GAGGCAGAGAGGATGGATACCGGAATGC AGGCGGCCTG chr15:70196579-70197079 - 27 3.85e-10 TGCAAATTGG GAGGCTTAGATGGCAGATAAAAGATTGG TTTGTGTCAC chr17:71023609-71024109 - 28 1.77e-09 GGCAGCTGTC GAGGCAGTGATGTATGACAAATGACTTG CTGCTGCAAT chr19:28425304-28425804 + 47 2.85e-09 ATAACGGGAT GACTGTGAGATGATTACAGGCTGAATTG TGTCCTCCCC chr2:47265678-47266178 - 37 3.05e-09 AATAAATGTT GATGCATAAATAATGAATGACAGATGAG ATGGATGGAT chr22:27212650-27213150 + 30 5.42e-09 GTGTTGGAGC GATCCTGAGTTGATGGATGAAATCGTCG GCGGCCCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:37072639-37073139 7.4e-14 29_[+9]_43 chr19:47769459-47769959 2.6e-13 10_[-9]_62 chr10:1498784-1499284 8.6e-11 31_[-9]_41 chr10:1499589-1500089 1e-10 40_[-9]_32 chr16:73070531-73071031 3e-10 34_[-9]_38 chr15:70196579-70197079 3.9e-10 26_[-9]_46 chr17:71023609-71024109 1.8e-09 27_[-9]_45 chr19:28425304-28425804 2.9e-09 46_[+9]_26 chr2:47265678-47266178 3.1e-09 36_[-9]_36 chr22:27212650-27213150 5.4e-09 29_[+9]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAKKSAKAGATGATKRATGRAWGADTGG width=28 seqs=10 chr22:37072639-37073139 ( 30) GATGCATGGATGATGGATGGATGAATGG 1 chr19:47769459-47769959 ( 11) GATGGATAGATGATGGATGGATGGATGG 1 chr10:1498784-1499284 ( 32) GAGTGAATGATGAGTAATGAATGAGTGT 1 chr10:1499589-1500089 ( 41) GAGTGAGCAATGAGTAATGAATGAGTGT 1 chr16:73070531-73071031 ( 35) GAGGCAGAGAGGATGGATACCGGAATGC 1 chr15:70196579-70197079 ( 27) GAGGCTTAGATGGCAGATAAAAGATTGG 1 chr17:71023609-71024109 ( 28) GAGGCAGTGATGTATGACAAATGACTTG 1 chr19:28425304-28425804 ( 47) GACTGTGAGATGATTACAGGCTGAATTG 1 chr2:47265678-47266178 ( 37) GATGCATAAATAATGAATGACAGATGAG 1 chr22:27212650-27213150 ( 30) GATCCTGAGTTGATGGATGAAATCGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 12.348 E= 4.3e+002 -997 -997 214 -997 187 -997 -997 -997 -997 -118 114 55 -997 -118 140 14 -997 140 82 -997 136 -997 -997 14 -145 -997 114 55 114 -118 -118 -45 -45 -997 182 -997 172 -997 -997 -145 -997 -997 -118 172 -145 -997 199 -997 155 -997 -118 -145 -145 -118 -18 114 -145 -997 114 55 55 -997 140 -997 172 -118 -997 -997 -145 -118 -997 155 14 -997 162 -997 114 -118 40 -997 136 40 -997 -997 14 -997 -118 114 -997 -997 199 -145 155 -118 -118 -997 55 -118 40 -45 -997 -997 -118 172 -145 -118 140 -45 -997 -118 162 -45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 10 E= 4.3e+002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.500000 0.400000 0.000000 0.100000 0.600000 0.300000 0.000000 0.600000 0.400000 0.000000 0.700000 0.000000 0.000000 0.300000 0.100000 0.000000 0.500000 0.400000 0.600000 0.100000 0.100000 0.200000 0.200000 0.000000 0.800000 0.000000 0.900000 0.000000 0.000000 0.100000 0.000000 0.000000 0.100000 0.900000 0.100000 0.000000 0.900000 0.000000 0.800000 0.000000 0.100000 0.100000 0.100000 0.100000 0.200000 0.600000 0.100000 0.000000 0.500000 0.400000 0.400000 0.000000 0.600000 0.000000 0.900000 0.100000 0.000000 0.000000 0.100000 0.100000 0.000000 0.800000 0.300000 0.000000 0.700000 0.000000 0.600000 0.100000 0.300000 0.000000 0.700000 0.300000 0.000000 0.000000 0.300000 0.000000 0.100000 0.600000 0.000000 0.000000 0.900000 0.100000 0.800000 0.100000 0.100000 0.000000 0.400000 0.100000 0.300000 0.200000 0.000000 0.000000 0.100000 0.900000 0.100000 0.100000 0.600000 0.200000 0.000000 0.100000 0.700000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKKSAKAGATGATKRATGRAWGADTGG MEME-9 regular expression -------------------------------------------------------------------------------- GA[GT][GT][CG][AT][GT][AT][GA]ATGA[TG][GT][GA]AT[GA][AG][AC][TA]GA[AGT]T[GT][GT] -------------------------------------------------------------------------------- Time 2648.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGSTCACGSCTGKAATCCCMR MEME-10 width = 22 sites = 7 llr = 143 E-value = 8.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGSTCACGSCTGKAATCCCMR MEME-10 Description -------------------------------------------------------------------------------- Simplified A 1:11::7:::::1:99::3:66 pos.-specific C :::3:a17:4a::::::7774: probability G 1a761::1a6::94:::::::4 matrix T 7:1:9:11:::a:611a3:3:: bits 2.1 * * * * 1.9 * * * ** * 1.7 * * * ** * 1.5 * * * *** * Relative 1.3 * ** * *** ****** Entropy 1.1 * ** ************** (29.6 bits) 0.9 *** ****************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TGGGTCACGGCTGTAATCCCAA consensus C C G TATCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSTCACGSCTGKAATCCCMR MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr17:75368271-75368771 - 18 1.24e-11 CCTGACGCAG TGGGTCACGCCTATAATCCCAG CACTTTGGAG chr17:46101204-46101704 + 78 2.02e-11 ctgggcacgg tggctcaggcctgtaatcccag c chr12:101052050-10105255 + 29 1.30e-10 GCTGTGAGCC TGGGTCTCGGCTGGAATTACAG TGTGGCTCAT chr18:48998095-48998595 - 64 2.23e-10 GCAGGCACCA AGGGTCCCGCCTGGAATTCCAA GGCAGTCACG chr9:18976688-18977188 + 70 2.90e-10 gcacaatgcc tggctcacggCTGTTATCATCA TCATCTTAT chr2:37376644-37377144 + 48 1.33e-09 AGGACTGTCT TGTGTCATGGCTGTATTCCTCA GCCGGAATTT chr5:93677260-93677760 + 51 1.42e-09 CCACAAGCAG GGAAGCACGGCTGGAATCCCCA CTAAGATCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSTCACGSCTGKAATCCCMR MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:75368271-75368771 1.2e-11 17_[-10]_61 chr17:46101204-46101704 2e-11 77_[+10]_1 chr12:101052050-10105255 1.3e-10 28_[+10]_50 chr18:48998095-48998595 2.2e-10 63_[-10]_15 chr9:18976688-18977188 2.9e-10 69_[+10]_9 chr2:37376644-37377144 1.3e-09 47_[+10]_31 chr5:93677260-93677760 1.4e-09 50_[+10]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSTCACGSCTGKAATCCCMR MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGSTCACGSCTGKAATCCCMR width=22 seqs=7 chr17:75368271-75368771 ( 18) TGGGTCACGCCTATAATCCCAG 1 chr17:46101204-46101704 ( 78) TGGCTCAGGCCTGTAATCCCAG 1 chr12:101052050-10105255 ( 29) TGGGTCTCGGCTGGAATTACAG 1 chr18:48998095-48998595 ( 64) AGGGTCCCGCCTGGAATTCCAA 1 chr9:18976688-18977188 ( 70) TGGCTCACGGCTGTTATCATCA 1 chr2:37376644-37377144 ( 48) TGTGTCATGGCTGTATTCCTCA 1 chr5:93677260-93677760 ( 51) GGAAGCACGGCTGGAATCCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSTCACGSCTGKAATCCCMR MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.3308 E= 8.0e+003 -93 -945 -67 139 -945 -945 214 -945 -93 -945 165 -93 -93 33 133 -945 -945 -945 -67 165 -945 214 -945 -945 139 -67 -945 -93 -945 165 -67 -93 -945 -945 214 -945 -945 92 133 -945 -945 214 -945 -945 -945 -945 -945 187 -93 -945 192 -945 -945 -945 92 106 165 -945 -945 -93 165 -945 -945 -93 -945 -945 -945 187 -945 165 -945 7 7 165 -945 -945 -945 165 -945 7 106 92 -945 -945 106 -945 92 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSTCACGSCTGKAATCCCMR MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 7 E= 8.0e+003 0.142857 0.000000 0.142857 0.714286 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.714286 0.142857 0.142857 0.285714 0.571429 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 0.714286 0.142857 0.000000 0.142857 0.000000 0.714286 0.142857 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 0.428571 0.571429 0.857143 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.285714 0.285714 0.714286 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.571429 0.428571 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSTCACGSCTGKAATCCCMR MEME-10 regular expression -------------------------------------------------------------------------------- TGG[GC]TCACG[GC]CTG[TG]AAT[CT][CA][CT][AC][AG] -------------------------------------------------------------------------------- Time 2905.98 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:83097803-83098303 1.54e-01 100 chr10:1499589-1500089 7.65e-05 40_[-9(1.04e-10)]_1_[-9(5.21e-05)]_\ 3 chr6:125946217-125946717 9.84e-02 69_[+1(4.84e-06)]_22 chr20:25252755-25253255 5.53e-02 16_[-3(6.81e-05)]_72 chr4:91064406-91064906 2.24e-02 41_[+5(2.11e-05)]_47 chr2:224678184-224678684 4.68e-01 100 chr19:4575296-4575796 2.41e-03 3_[-4(1.49e-05)]_23_[+1(3.10e-05)]_\ 34 chr2:234880375-234880875 2.46e-02 12_[-1(5.39e-05)]_1_[-3(9.79e-06)]_\ 66 chr19:18364892-18365392 7.88e-01 38_[+3(9.51e-05)]_50 chr21:29075686-29076186 1.98e-01 100 chr21:38984949-38985449 1.67e-01 100 chr1:151070389-151070889 8.35e-01 100 chr1:237873395-237873895 4.48e-02 87_[-1(3.92e-05)]_4 chr1:244347889-244348389 7.70e-03 42_[+6(1.09e-05)]_42 chr5:17379027-17379527 1.37e-01 25_[+5(1.83e-05)]_63 chr1:64039490-64039990 8.59e-02 100 chr7:148772489-148772989 3.73e-01 71_[+1(1.29e-05)]_20 chr7:33669121-33669621 4.49e-01 100 chr17:71632318-71632818 5.80e-01 100 chr1:232793875-232794375 6.06e-01 100 chr6:150403434-150403934 2.01e-01 100 chr5:174371533-174372033 1.49e-01 59_[+1(4.84e-06)]_32 chr8:144456660-144457160 1.98e-06 13_[-3(3.96e-05)]_1_[+3(6.53e-06)]_\ 2_[+3(2.07e-06)]_12_[+8(7.54e-10)]_15 chr2:45009333-45009833 9.51e-02 57_[+4(2.89e-06)]_12 chr17:26603651-26604151 9.58e-01 100 chr3:171801840-171802340 1.68e-01 1_[-1(5.39e-05)]_90 chr15:70091851-70092351 3.37e-01 100 chr10:121500880-12150138 6.48e-01 100 chr5:133274486-133274986 5.64e-02 100 chr16:14013440-14013940 2.35e-02 19_[-6(2.52e-05)]_65 chr19:36604616-36605116 1.29e-02 67_[+4(2.83e-07)]_2 chr1:3403743-3404243 6.66e-02 65_[+5(8.96e-06)]_23 chr22:35477880-35478380 5.16e-02 53_[+5(1.83e-05)]_35 chr12:106074988-10607548 3.43e-01 100 chr8:6648874-6649374 9.27e-01 100 chr1:6404541-6405041 3.55e-04 2_[+6(1.99e-05)]_47_[+4(2.54e-07)]_\ 4 chr15:70196579-70197079 1.17e-03 26_[-9(3.85e-10)]_46 chr4:144356274-144356774 4.14e-02 100 chr12:122368328-12236882 4.74e-01 100 chr9:14326308-14326808 3.98e-02 32_[-3(2.64e-05)]_56 chr6:15956248-15956748 9.12e-02 100 chr6:1809342-1809842 1.26e-01 51_[+5(8.07e-05)]_37 chr6:41767097-41767597 2.37e-01 43_[+3(3.96e-05)]_28_[-3(6.81e-05)]_\ 5 chr1:44213176-44213676 8.37e-01 100 chr5:137833406-137833906 5.63e-01 100 chr22:24727077-24727577 1.07e-02 28_[+1(4.84e-06)]_63 chr21:37370698-37371198 9.39e-01 100 chr7:101880999-101881499 4.89e-01 100 chr22:27115741-27116241 8.05e-02 45_[+3(2.88e-05)]_43 chr10:34320202-34320702 7.45e-02 58_[+5(4.82e-05)]_30 chr11:9565981-9566481 3.63e-01 91_[-1(5.39e-05)] chr6:90137763-90138263 1.63e-02 61_[-3(8.07e-05)]_8_[+5(6.58e-05)]_\ 7 chr6:27495557-27496057 1.78e-04 4_[-8(2.74e-09)]_75 chr1:225508457-225508957 6.86e-03 2_[-1(1.62e-05)]_43_[-1(3.10e-05)]_\ 37 chr5:99020167-99020667 1.49e-03 4_[-1(1.29e-05)]_57_[-5(5.96e-05)]_\ 4_[+3(1.24e-05)]_2 chr3:9141215-9141715 1.37e-06 15_[-5(1.42e-05)]_24_[+3(1.40e-06)]_\ 37 chr7:152709602-152710102 1.36e-02 22_[+3(2.13e-05)]_18_[-1(2.36e-05)]_\ [-3(5.18e-05)]_27 chr17:76586761-76587261 1.66e-01 44_[+1(6.37e-05)]_47 chr16:22232696-22233196 1.02e-01 100 chr1:212596192-212596692 8.27e-01 100 chrX:41084525-41085025 1.46e-03 9_[+4(3.15e-06)]_14_[-3(2.28e-07)]_\ 34 chr17:41403931-41404431 9.39e-02 70_[-6(7.11e-05)]_14 chr10:129525343-12952584 1.66e-01 63_[-4(1.28e-05)]_6 chr10:93702418-93702918 4.11e-01 55_[-4(3.44e-06)]_14 chr6:27605461-27605961 8.93e-01 100 chr5:125409775-125410275 9.02e-01 100 chr5:90548030-90548530 6.28e-02 12_[+5(1.42e-05)]_35_[+1(2.03e-05)]_\ 32 chr5:113203155-113203655 6.87e-02 9_[+4(6.77e-06)]_60 chr5:125277458-125277958 7.81e-04 30_[-6(6.59e-07)]_14_[-1(3.43e-05)]_\ 31 chr7:157932453-157932953 6.28e-03 3_[+1(1.62e-05)]_2_[-5(4.82e-05)]_\ 20_[-5(3.41e-05)]_11_[+1(1.62e-05)]_22 chr22:20117190-20117690 5.38e-02 11_[-4(7.10e-07)]_58 chr10:117461665-11746216 5.07e-02 100 chr1:85297799-85298299 3.28e-01 100 chrX:24146271-24146771 8.05e-01 100 chr20:44018060-44018560 4.50e-01 100 chr12:85834350-85834850 9.44e-02 44_[+6(6.32e-06)]_2_[+6(7.11e-05)]_\ 22 chr1:234523504-234524004 1.63e-01 100 chr18:50870160-50870660 9.59e-03 32_[+1(4.84e-06)]_59 chr9:127388304-127388804 2.68e-02 24_[+3(3.54e-05)]_36_[-1(4.40e-05)]_\ 19 chr10:72098736-72099236 1.18e-01 46_[-5(3.11e-06)]_42 chr5:14264585-14265085 1.16e-04 14_[+3(2.73e-06)]_7_[-4(9.52e-07)]_\ 36 chr22:30196386-30196886 5.52e-03 4_[+6(3.20e-05)]_21_[-4(8.32e-05)]_\ 28 chr8:37472281-37472781 5.86e-01 100 chr7:105024683-105025183 4.05e-01 23_[+1(5.39e-05)]_68 chr20:41048747-41049247 2.32e-01 26_[+9(6.82e-05)]_46 chr8:16825873-16826373 1.76e-07 13_[-2(7.10e-12)]_65 chr9:97921992-97922492 2.65e-02 36_[+3(4.00e-07)]_52 chr1:229221146-229221646 1.77e-02 20_[+3(1.54e-05)]_68 chr1:1000621-1001121 7.44e-03 2_[-4(4.09e-06)]_17_[+3(2.73e-06)]_\ 5_[-4(2.88e-05)]_2 chr9:95721114-95721614 6.11e-01 100 chr20:52972202-52972702 9.00e-12 22_[+2(5.04e-13)]_25_[-4(2.03e-10)] chr17:43670900-43671400 4.39e-02 100 chr7:116426339-116426839 1.37e-02 [-6(5.37e-05)]_58_[+10(3.89e-05)]_4 chr21:36909840-36910340 5.40e-01 100 chr12:54051968-54052468 6.47e-03 41_[+4(8.41e-08)]_28 chr5:136729804-136730304 7.92e-01 100 chr5:59127549-59128049 5.68e-01 100 chr7:123643757-123644257 6.87e-06 19_[-5(9.80e-07)]_34_[-1(7.74e-05)]_\ [-2(3.83e-05)]_4 chr13:41696497-41696997 3.73e-02 1_[-3(2.13e-05)]_87 chr1:183471818-183472318 3.52e-01 100 chr17:46101204-46101704 8.61e-08 4_[-3(7.35e-06)]_61_[+10(2.02e-11)]_\ 1 chr19:35947356-35947856 2.73e-07 41_[+2(5.18e-14)]_[+2(2.56e-09)]_15 chr8:71496041-71496541 5.94e-03 7_[-6(1.68e-05)]_52_[-6(2.59e-06)]_\ 9 chr6:158405261-158405761 1.59e-02 38_[-5(8.81e-07)]_50 chr11:65421163-65421663 4.77e-02 100 chr6:163745869-163746369 9.17e-01 100 chr6:100592918-100593418 3.09e-01 100 chr5:108765629-108766129 4.22e-02 85_[-3(2.88e-05)]_3 chr2:37376644-37377144 3.12e-05 47_[+10(1.33e-09)]_31 chr1:221393990-221394490 1.87e-01 100 chr10:75294703-75295203 1.04e-02 32_[-6(7.62e-06)]_52 chr3:71102143-71102643 1.10e-01 54_[+3(3.20e-05)]_34 chr15:71364128-71364628 8.49e-01 100 chr10:8534072-8534572 7.03e-01 100 chr6:112231662-112232162 2.72e-02 76_[+1(3.92e-05)]_15 chr8:42507539-42508039 7.68e-01 100 chr1:28246631-28247131 3.14e-01 84_[-5(3.83e-05)]_4 chr18:31206750-31207250 3.38e-01 100 chr1:244665841-244666341 5.64e-01 100 chr5:168317634-168318134 8.62e-02 64_[-3(1.40e-06)]_24 chr17:37488137-37488637 5.22e-02 44_[+1(2.03e-05)]_47 chr1:232704730-232705230 1.98e-03 36_[+1(2.76e-05)]_7_[-1(2.36e-05)]_\ 6_[+5(5.96e-05)]_21 chr6:4320848-4321348 4.64e-01 100 chr19:37655845-37656345 4.25e-03 53_[+4(5.26e-07)]_16 chr9:17900549-17901049 1.18e-02 32_[-3(6.53e-06)]_56 chr20:52105126-52105626 6.23e-01 100 chr3:16482918-16483418 1.54e-01 63_[+6(4.00e-05)]_21 chr1:9802989-9803489 3.07e-01 77_[-5(9.75e-05)]_11 chr12:1171601-1172101 1.03e-01 33_[+5(6.52e-06)]_55 chr6:131816109-131816609 3.15e-05 21_[-10(1.73e-05)]_27_\ [+6(1.06e-06)]_14 chr12:56725106-56725606 4.39e-03 22_[-4(9.43e-08)]_47 chr13:112346389-11234688 2.22e-01 57_[+5(1.83e-05)]_31 chr6:82072025-82072525 4.63e-02 32_[+6(5.22e-06)]_52 chr11:47578729-47579229 2.55e-01 29_[+4(2.02e-06)]_40 chr1:155127056-155127556 6.97e-05 5_[-2(3.23e-08)]_26_[+3(4.72e-05)]_\ 35 chr1:153490323-153490823 7.87e-03 56_[-6(2.96e-05)]_28 chr7:140396314-140396814 4.47e-01 100 chr7:150360019-150360519 9.68e-06 1_[-2(3.66e-09)]_25_[-1(1.29e-05)]_\ 43 chr6:87095013-87095513 1.50e-01 7_[+3(4.32e-05)]_6_[+3(4.32e-05)]_\ 63 chr5:10606924-10607424 5.83e-08 34_[-2(1.43e-11)]_10_[+9(4.71e-05)]_\ 6 chr19:1021385-1021885 1.65e-01 100 chr19:40646043-40646543 1.72e-04 58_[-1(2.03e-05)]_15_[-6(2.34e-07)]_\ 2 chr20:51934166-51934666 5.01e-04 84_[-1(2.36e-05)]_7 chr11:32890794-32891294 2.52e-03 2_[+6(6.32e-06)]_34_[-6(1.09e-05)]_\ 32 chr12:68808685-68809185 1.49e-01 100 chr11:72308447-72308947 6.85e-02 49_[-5(1.42e-05)]_39 chr18:3966565-3967065 1.41e-06 30_[+8(4.21e-09)]_25_[+3(1.01e-06)]_\ 12 chr6:21748569-21749069 3.40e-02 88_[-1(5.39e-05)]_3 chr20:25237741-25238241 4.99e-03 27_[-1(1.29e-05)]_64 chr16:77409298-77409798 1.71e-02 49_[+7(2.10e-05)]_9 chr4:156931253-156931753 6.39e-03 33_[+1(5.39e-05)]_26_[+6(2.33e-06)]_\ 16 chr10:114525334-11452583 3.45e-01 100 chr15:89498160-89498660 8.57e-04 31_[-3(3.31e-06)]_4_[-6(1.83e-05)]_\ 37 chr19:4968529-4969029 3.31e-02 15_[-4(8.63e-06)]_54 chr19:36169197-36169697 1.46e-01 100 chr12:120904401-12090490 1.13e-02 20_[+4(7.35e-06)]_49 chr3:9976950-9977450 2.61e-05 30_[+8(7.40e-05)]_[+1(2.36e-05)]_24_\ [-3(5.00e-06)]_4 chr15:36951756-36952256 2.31e-01 100 chr7:27165501-27166001 6.39e-01 100 chr12:116718787-11671928 1.58e-01 100 chr10:5548802-5549302 6.28e-03 43_[+3(2.73e-06)]_27_[+1(7.74e-05)]_\ 9 chr16:79600660-79601160 3.55e-03 19_[+5(8.96e-06)]_35_[+4(9.35e-06)]_\ 3 chr10:4663058-4663558 1.54e-02 19_[-1(5.39e-05)]_11_[+2(5.12e-05)]_\ 39 chr8:122969497-122969997 3.06e-04 50_[+5(7.27e-05)]_10_[-6(4.57e-07)]_\ 12 chr1:235917404-235917904 1.75e-02 34_[-1(3.92e-05)]_57 chr1:210236407-210236907 2.18e-02 56_[+6(7.62e-06)]_28 chr10:132700571-13270107 1.14e-02 75_[-5(5.44e-06)]_13 chr19:38652213-38652713 8.45e-02 24_[+8(6.32e-05)]_55 chr6:89297923-89298423 2.12e-03 10_[+5(6.58e-05)]_19_[+1(1.29e-05)]_\ 50 chr1:229230238-229230738 1.60e-03 6_[+3(1.70e-05)]_82 chr1:8439082-8439582 5.54e-01 100 chr9:132744929-132745429 8.43e-01 100 chr20:58650908-58651408 1.94e-01 3_[-4(1.61e-05)]_29_[-4(2.89e-06)]_\ 6 chr16:19102301-19102801 3.11e-03 63_[+3(1.13e-07)]_25 chr18:50632165-50632665 1.74e-02 84_[+1(4.84e-06)]_7 chr10:117148216-11714871 6.53e-01 100 chr4:40333859-40334359 2.79e-01 100 chr3:194350300-194350800 6.55e-01 100 chr4:31089744-31090244 3.68e-03 65_[-1(3.43e-05)]_9_[+6(1.09e-05)]_\ 1 chr2:212135625-212136125 3.04e-03 35_[+1(6.37e-05)]_56 chr1:167162907-167163407 6.96e-07 45_[-2(5.18e-14)]_[-2(4.66e-10)]_11 chr1:209884705-209885205 4.02e-01 100 chr7:100101249-100101749 2.85e-02 7_[+4(8.32e-05)]_20_[-4(2.64e-06)]_\ 11 chr11:110305510-11030601 4.71e-02 100 chr21:33971482-33971982 8.32e-01 100 chr13:79918546-79919046 3.28e-02 22_[-6(2.15e-05)]_62 chr1:8706893-8707393 1.91e-01 100 chr17:57541792-57542292 1.30e-02 31_[+1(5.39e-05)]_25_[+3(2.73e-06)]_\ 23 chr12:65631577-65632077 1.00e-02 33_[-1(4.84e-06)]_58 chr20:4041777-4042277 8.72e-05 32_[-1(2.76e-05)]_9_[-4(8.35e-10)]_\ 19 chr12:101052050-10105255 1.76e-05 28_[+10(1.30e-10)]_50 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9.28e-02 71_[+5(5.33e-05)]_17 chr10:12720310-12720810 2.43e-01 100 chr13:112213417-11221391 1.46e-03 4_[+3(2.33e-05)]_13_[+4(6.47e-05)]_\ 25_[+3(1.96e-05)]_3 chr5:88516356-88516856 4.43e-01 100 chr10:23420944-23421444 1.90e-01 81_[+6(4.31e-05)]_3 chr12:54033451-54033951 5.72e-01 9_[+5(4.82e-05)]_79 chr18:50629058-50629558 1.88e-01 100 chr1:233241734-233242234 7.22e-01 100 chr10:7311286-7311786 1.73e-03 80_[+5(3.03e-05)]_8 chr6:169395992-169396492 2.43e-01 30_[+3(5.66e-06)]_30_[+3(5.66e-06)]_\ 16 chr10:129440215-12944071 4.03e-03 11_[+3(6.53e-06)]_77 chr6:134109467-134109967 2.35e-01 56_[+1(7.74e-05)]_5_[+3(7.49e-05)]_\ 18 chr1:12478149-12478649 2.87e-01 100 chr17:40827937-40828437 1.34e-01 100 chr6:150418471-150418971 2.19e-01 79_[+5(4.82e-05)]_9 chr3:182365035-182365535 2.60e-01 100 chr5:99900476-99900976 1.67e-05 17_[-6(1.88e-06)]_24_[+1(8.87e-06)]_\ 5_[-1(7.74e-05)]_3_[-5(3.11e-06)]_5 chr10:15796070-15796570 2.99e-02 100 chr19:2529456-2529956 8.16e-01 100 chr3:122824947-122825447 5.17e-02 100 chr10:85642760-85643260 1.16e-01 14_[+3(4.28e-06)]_74 chr1:224317340-224317840 2.27e-01 100 chr2:46481508-46482008 9.47e-03 83_[+1(2.03e-05)]_8 chr1:54272958-54273458 3.39e-02 40_[-5(2.11e-05)]_48 chr17:49976170-49976670 2.69e-01 100 chr17:32015546-32016046 3.29e-01 100 chr4:118327827-118328327 3.52e-02 14_[-1(5.39e-05)]_77 chr5:57042472-57042972 2.82e-01 22_[+5(5.44e-06)]_66 chr1:159916140-159916640 9.58e-03 31_[+3(2.07e-06)]_57 chr20:44728721-44729221 4.52e-04 47_[+6(2.33e-06)]_37 chr9:133977341-133977841 3.81e-04 39_[+8(1.67e-08)]_40 chr21:39313566-39314066 1.44e-01 66_[-4(3.14e-07)]_3 chr4:72112443-72112943 3.46e-02 40_[+1(8.87e-06)]_19_[+1(4.84e-06)]_\ 3_[+1(8.87e-06)]_11 chr5:174503744-174504244 3.11e-02 31_[-1(3.43e-05)]_60 chr17:61335987-61336487 4.41e-01 100 chr6:137853589-137854089 3.63e-01 100 chr1:81126899-81127399 2.73e-01 100 chr20:53609804-53610304 4.79e-01 13_[-5(4.82e-05)]_75 chr3:72123966-72124466 4.16e-02 41_[-5(3.11e-06)]_47 chr3:194134798-194135298 3.34e-09 1_[+4(1.31e-09)]_24_[-2(6.56e-11)]_\ 22 chr17:34981750-34982250 4.19e-01 34_[+3(8.07e-05)]_54 chr20:52974036-52974536 9.25e-04 51_[-8(1.95e-09)]_28 chr14:96979558-96980058 3.23e-01 73_[+5(2.11e-05)]_15 chr2:156781589-156782089 5.51e-16 1_[+7(2.28e-25)]_57 chr10:72204254-72204754 9.29e-01 100 chr22:40711461-40711961 3.45e-03 3_[+6(2.33e-06)]_21_[+1(4.84e-06)]_\ 51 chr9:129495811-129496311 1.20e-04 38_[-4(1.65e-07)]_2_[-3(9.79e-06)]_\ 17 chr6:142885231-142885731 3.59e-05 39_[-3(9.51e-05)]_1_[+6(8.44e-07)]_\ 9_[+5(4.31e-05)]_11 chr17:48626355-48626855 1.18e-01 100 chr13:110870167-11087066 1.59e-01 31_[-1(3.43e-05)]_60 chr1:223518477-223518977 4.28e-16 5_[+7(2.38e-24)]_53 chr6:52482907-52483407 2.72e-01 100 chr5:93582567-93583067 2.00e-06 6_[+2(2.00e-13)]_72 chr22:27212650-27213150 1.08e-05 29_[+9(5.42e-09)]_43 chr10:121310098-12131059 1.26e-01 49_[-8(2.45e-07)]_30 chr15:70526457-70526957 2.43e-01 100 chr16:2799729-2800229 7.29e-02 44_[+8(4.74e-05)]_35 chr10:63707208-63707708 1.10e-02 32_[+1(4.84e-06)]_7_[+3(8.07e-05)]_\ 26_[+1(3.10e-05)]_5 chr22:42964917-42965417 3.88e-05 72_[+2(3.66e-09)]_6 chr3:71982566-71983066 1.50e-01 1_[-1(1.62e-05)]_66_[-1(4.84e-06)]_\ 15 chr7:98476742-98477242 4.05e-01 100 chr15:77067283-77067783 6.69e-01 100 chr7:70092362-70092862 2.16e-01 100 chr5:124747150-124747650 1.95e-03 55_[-4(2.64e-06)]_14 chr1:81032864-81033364 8.37e-04 26_[+3(5.66e-06)]_36_[-5(2.69e-05)]_\ 14 chr7:80876821-80877321 5.46e-01 100 chr21:34845662-34846162 1.38e-03 [-6(4.31e-05)]_19_[+1(3.92e-05)]_56 chr6:149704761-149705261 5.14e-03 26_[+3(1.08e-05)]_62 chr4:609400-609900 4.37e-02 100 chr1:41870130-41870630 1.80e-03 66_[-5(8.96e-06)]_22 chr16:1271746-1272246 1.31e-02 26_[+4(3.15e-06)]_43 chr20:53899462-53899962 6.10e-02 100 chr10:75402385-75402885 4.89e-03 7_[+5(5.33e-05)]_30_[-5(2.11e-05)]_\ 39 chr18:49656002-49656502 5.07e-01 100 chr1:228861053-228861553 2.47e-02 31_[+5(1.20e-05)]_57 chr12:806379-806879 1.07e-01 100 chr17:68381052-68381552 4.16e-02 34_[-1(5.39e-05)]_57 chr10:77287683-77288183 6.47e-01 100 chr8:630750-631250 6.00e-02 27_[-1(3.10e-05)]_30_[-1(3.10e-05)]_\ 3_[-8(6.95e-05)]_1 chr15:96361013-96361513 5.83e-04 [+4(9.18e-09)]_6_[-5(8.07e-05)]_51 chr9:81689719-81690219 7.37e-06 34_[-4(6.67e-08)]_3_[+5(1.42e-05)]_\ 20 chr10:72800357-72800857 7.60e-01 100 chr13:95535180-95535680 8.52e-03 16_[-1(4.84e-06)]_75 chr10:50463960-50464460 1.95e-02 24_[+6(5.72e-08)]_60 chr1:232678509-232679009 1.64e-03 9_[+1(1.29e-05)]_64_[-5(5.33e-05)]_\ 6 chr17:71438649-71439149 4.11e-03 23_[-6(2.87e-06)]_61 chr1:87718323-87718823 9.46e-02 20_[+5(8.87e-05)]_38_[+5(3.11e-06)]_\ 18 chr13:113493250-11349375 1.07e-03 18_[+1(8.87e-06)]_73 chr6:136403046-136403546 2.33e-03 38_[+3(2.64e-05)]_22_[-5(2.78e-06)]_\ 16 chr10:3220724-3221224 3.44e-02 64_[-1(3.92e-05)]_27 chr1:61141546-61142046 9.00e-03 40_[-3(3.96e-05)]_48 chr6:125050648-125051148 2.45e-01 100 chr7:13920124-13920624 7.72e-01 100 chr3:100002787-100003287 1.35e-02 13_[-3(5.66e-06)]_56_[-1(1.62e-05)]_\ 10 chr4:18021610-18022110 1.38e-04 8_[-4(5.26e-07)]_29_[+4(5.37e-09)]_\ 1 chr9:1458443-1458943 2.75e-03 3_[-1(7.74e-05)]_17_[+1(2.03e-05)]_\ 24_[-3(9.51e-05)]_26 chr14:76486253-76486753 7.18e-02 100 chr19:40920951-40921451 4.27e-01 44_[+1(2.36e-05)]_47 chr12:31749246-31749746 1.17e-02 79_[+6(3.50e-08)]_5 chr10:101442021-10144252 7.39e-07 76_[+2(5.18e-14)]_2 chr6:49541134-49541634 8.40e-01 100 chr5:158451510-158452010 9.04e-03 46_[+3(1.54e-05)]_30_[-3(2.28e-07)] chr6:47134622-47135122 5.40e-02 36_[-1(8.87e-06)]_4_[+5(8.07e-05)]_\ 39 chr5:69521094-69521594 6.31e-02 22_[+1(5.39e-05)]_31_[-6(1.99e-05)]_\ 22 chr15:58332055-58332555 3.97e-04 85_[-1(1.62e-05)]_6 chr8:109611137-109611637 2.17e-01 100 chr10:68153488-68153988 2.28e-04 [+7(1.80e-05)]_[+1(3.43e-05)]_14_\ [-3(6.81e-05)]_23 chr8:124077232-124077732 1.56e-01 60_[+5(4.31e-05)]_28 chr1:38783552-38784052 4.70e-02 81_[+5(7.27e-05)]_7 chr18:395626-396126 7.84e-02 70_[-1(2.76e-05)]_21 chr19:40831796-40832296 5.74e-01 100 chr3:42819866-42820366 1.18e-01 100 chr16:25049559-25050059 4.33e-01 100 chr1:151494689-151495189 2.47e-03 57_[-8(6.95e-05)]_2_[-6(9.48e-07)]_\ 4 chr13:87123923-87124423 1.74e-01 24_[+1(1.29e-05)]_67 chr7:159146514-159147014 1.73e-02 24_[+5(4.31e-05)]_15_[-9(6.82e-05)]_\ 21 chr17:5526721-5527221 2.39e-03 69_[-3(1.75e-06)]_19 chr5:17305899-17306399 1.40e-03 22_[+3(4.72e-05)]_66 chr10:35195676-35196176 6.89e-01 100 chr1:175470978-175471478 1.99e-02 100 chr3:61821736-61822236 5.09e-01 100 chr19:38862526-38863026 2.26e-02 79_[+5(1.56e-06)]_9 chr7:133492110-133492610 1.45e-02 24_[-3(3.31e-06)]_64 chr21:32771755-32772255 1.98e-03 6_[-4(2.55e-08)]_63 chr21:29217695-29218195 4.06e-03 31_[+3(4.32e-05)]_3_[-1(7.74e-05)]_\ 45 chr14:34700080-34700580 2.46e-01 59_[+1(7.74e-05)]_32 chr10:44752846-44753346 1.46e-01 57_[-6(1.00e-05)]_27 chr4:80307286-80307786 2.60e-01 10_[-5(2.69e-05)]_78 chr1:11178221-11178721 8.24e-01 100 chr4:173252274-173252774 1.79e-01 44_[-1(8.87e-06)]_47 chr14:99821641-99822141 7.27e-01 100 chr5:94469756-94470256 6.57e-01 100 chr17:39769935-39770435 2.96e-01 100 chr6:43321930-43322430 4.15e-03 18_[+5(5.96e-05)]_7_[+6(8.33e-06)]_\ 47 chr1:80403325-80403825 1.55e-01 28_[-10(7.86e-05)]_50 chr1:233112912-233113412 7.75e-04 6_[+3(7.35e-06)]_16_[-5(7.56e-06)]_\ 54 chr9:18976688-18977188 7.29e-10 9_[-2(3.32e-05)]_[+6(2.59e-06)]_22_\ [+10(2.90e-10)]_9 chr12:25333748-25334248 8.93e-02 77_[+5(6.58e-05)]_11 chr5:14156506-14157006 6.91e-01 82_[+1(8.71e-05)]_9 chr19:34218183-34218683 1.07e-03 24_[-5(1.59e-05)]_20_[-6(5.22e-06)]_\ 28 chr7:116218165-116218665 2.71e-03 37_[-3(1.38e-05)]_33_[-6(2.15e-05)]_\ 2 chr10:76113918-76114418 3.41e-02 100 chr16:87388430-87388930 3.20e-04 [+1(7.74e-05)]_31_[-5(1.56e-06)]_48 chr15:98896842-98897342 2.89e-01 100 chr17:81393850-81394350 8.93e-01 100 chr10:93209006-93209506 1.02e-01 1_[+3(1.96e-05)]_87 chr1:220119015-220119515 4.12e-02 85_[-5(1.20e-05)]_3 chr17:3890048-3890548 3.24e-04 37_[+4(3.68e-08)]_20_[-1(3.43e-05)]_\ 3 chr21:42974398-42974898 3.47e-02 69_[+4(5.26e-07)] chr17:48492600-48493100 2.10e-01 100 chr12:117128158-11712865 9.96e-08 26_[+3(7.35e-06)]_17_[-8(5.83e-12)]_\ 24 chr10:22552765-22553265 6.21e-01 100 chr5:124740927-124741427 8.37e-01 100 chr8:37479278-37479778 4.10e-01 100 chr1:234700131-234700631 1.05e-02 17_[+8(6.95e-05)]_29_[-1(2.03e-05)]_\ 24 chr1:86774438-86774938 1.75e-01 11_[-8(2.23e-05)]_68 chr1:51517930-51518430 4.50e-01 100 chrX:14039338-14039838 2.74e-02 100 chr1:16122832-16123332 5.29e-01 100 chr15:67792456-67792956 7.45e-03 5_[-3(1.38e-05)]_36_[+5(3.03e-05)]_\ 35 chr15:70494068-70494568 5.61e-04 5_[-5(7.43e-07)]_65_[-3(1.01e-06)]_\ 6 chr1:214439363-214439863 4.78e-01 100 chr1:236097023-236097523 1.01e-01 9_[-4(2.32e-05)]_[-1(2.36e-05)]_20_\ [-1(2.36e-05)]_22 chr8:37302571-37303071 8.14e-02 49_[+5(3.96e-06)]_39 chr10:75379160-75379660 3.10e-01 8_[-5(9.75e-05)]_80 chr3:181328952-181329452 8.31e-01 100 chr13:110965219-11096571 5.13e-02 8_[-1(2.76e-05)]_8_[-1(2.76e-05)]_\ 19_[-1(2.76e-05)]_8_[-1(2.76e-05)]_21 chr17:77233781-77234281 4.66e-02 18_[+3(2.13e-05)]_28_[+3(2.13e-05)]_\ 30 chr16:15590853-15591353 5.21e-02 62_[+1(3.10e-05)]_4_[+8(2.47e-05)]_\ 4 chr17:78558309-78558809 1.45e-02 2_[+3(5.66e-08)]_10_[+3(2.28e-07)]_\ 10_[+3(1.24e-05)]_42 chr10:87845976-87846476 3.93e-01 100 chr5:59303274-59303774 3.93e-15 31_[-7(9.39e-24)]_27 chr5:175378418-175378918 8.43e-04 57_[+1(8.71e-05)]_1_[+5(8.96e-06)]_\ 21 chr9:85743180-85743680 5.73e-02 62_[-5(1.42e-05)]_26 chr1:155244578-155245078 2.63e-03 21_[-4(2.69e-09)]_17_[-4(3.87e-07)] chr17:8288217-8288717 6.73e-03 13_[+5(2.36e-05)]_[+5(3.83e-05)]_63 chr1:234723925-234724425 8.44e-09 9_[-4(1.73e-10)]_9_[+6(7.62e-06)]_\ 35 chr6:82260156-82260656 4.77e-01 100 chr17:60173278-60173778 8.97e-05 55_[-3(8.73e-06)]_33 chr5:124735035-124735535 1.07e-01 74_[-5(8.87e-05)]_14 chr1:125179940-125180440 9.79e-01 100 chr17:8222298-8222798 1.00e-01 100 chr12:54359085-54359585 2.00e-02 53_[+5(1.59e-05)]_4_[-4(6.43e-07)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: surya ********************************************************************************