# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:54 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/TSHZ1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:54 PDT 2018)
#        host: surya
#        when: Thu May 10 17:03:20 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.283 C 0.221 G 0.221 T 0.275


MOTIF GTCAYY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTCAYY     RRTGAC        252         97   1.8e-023   5.6e-019
#           GTCATC     GATGAC         88         27   9.0e-010   2.9e-005
#           GTCACC     GGTGAC         64         17   2.7e-008   8.5e-004
#           GTCATT     AATGAC         82         31   2.6e-007   8.3e-003
#           GTCACT     AGTGAC         73         31   1.0e-005   3.3e-001

letter-probability matrix: alength= 4 w= 6 nsites= 357 E= 5.6e-019
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.462185 0.000000 0.537815
0.000000 0.515406 0.000000 0.484594


MOTIF ATAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATAAA      TTTAT        284        130   3.5e-021   1.1e-016
#            ATAAA      TTTAT        284        130   3.5e-021   1.1e-016

letter-probability matrix: alength= 4 w= 5 nsites= 382 E= 1.1e-016
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AWTTAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AWTTAC     GTAAWT        119         45   2.4e-010   7.2e-006
#           AATTAC     GTAATT         64         21   7.2e-007   2.2e-002
#           ATTTAC     GTAAAT         58         26   2.0e-004   6.0e+000

letter-probability matrix: alength= 4 w= 6 nsites= 129 E= 7.2e-006
1.000000 0.000000 0.000000 0.000000
0.542636 0.000000 0.000000 0.457364
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TGACTCAB DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACTCAB   VTGAGTCA         49          9   2.2e-008   6.7e-004
#         TGACTCAC   GTGAGTCA         20          4   7.0e-004   2.1e+001
#         TGACTCAG   CTGAGTCA         13          1   8.7e-004   2.6e+001
#         TGACTCAT   ATGAGTCA         17          4   3.4e-003   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 6.7e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.403509 0.228070 0.368421


MOTIF CTGHCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CTGHCA     TGDCAG        176         98   5.1e-008   1.5e-003
#           CTGACA     TGTCAG         77         36   3.3e-005   9.8e-001
#           CTGTCA     TGACAG         73         35   8.3e-005   2.5e+000
#           CTGCCA     TGGCAG         67         37   1.4e-003   4.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 212 E= 1.5e-003
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.349057 0.353774 0.000000 0.297170
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 23.38 seconds