# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:08 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP7.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:10 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:20:02 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.291 C 0.207 G 0.211 T 0.291


MOTIF DTAATTR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     DTAATTR    YAATTAH        257         56   3.7e-042   1.1e-037
#          GTAATTA    TAATTAC        110          9   1.5e-025   4.6e-021
#          ATAATTA    TAATTAT        106         14   1.2e-020   3.7e-016
#          TTAATTA    TAATTAA         71          8   8.4e-015   2.6e-010
#          GTAATTG    CAATTAC         32          8   7.1e-005   2.2e+000
#          TTAATTG    CAATTAA         37         14   7.0e-004   2.2e+001
#          ATAATTG    CAATTAT         32         13   2.8e-003   8.8e+001

letter-probability matrix: alength= 4 w= 7 nsites= 301 E= 1.1e-037
0.375415 0.000000 0.368771 0.255814
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.661130 0.000000 0.338870 0.000000


MOTIF RTGACTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGACTCA   TGAGTCAY         54          4   5.4e-013   1.6e-008
#         ATGACTCA   TGAGTCAT         27          1   8.2e-008   2.5e-003
#         GTGACTCA   TGAGTCAC         27          3   3.3e-006   1.0e-001

letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.6e-008
0.482143 0.000000 0.517857 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAATSA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TAATSA     TSATTA        173         82   7.5e-011   2.3e-006
#           TAATGA     TCATTA        115         47   5.0e-009   1.5e-004
#           TAATCA     TGATTA         76         39   1.9e-004   5.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 206 E= 2.3e-006
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.398058 0.601942 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF RTAAAY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      RTAAAY     RTTTAY        247        153   5.5e-009   1.6e-004
#           ATAAAT     ATTTAT        108         59   2.8e-005   8.5e-001
#           GTAAAT     ATTTAC         73         42   1.6e-003   4.7e+001
#           ATAAAC     GTTTAT         68         41   4.4e-003   1.3e+002
#           GTAAAC     GTTTAC         50         29   9.7e-003   2.9e+002

letter-probability matrix: alength= 4 w= 6 nsites= 312 E= 1.6e-004
0.599359 0.000000 0.400641 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.387821 0.000000 0.612179


MOTIF CACKTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CACKTC     GAMGTG         74         28   1.1e-006   3.3e-002
#           CACTTC     GAAGTG         60         24   3.0e-005   8.7e-001
#           CACGTC     GACGTG         16          4   5.6e-003   1.6e+002

letter-probability matrix: alength= 4 w= 6 nsites= 77 E= 3.3e-002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.207792 0.792208
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 77.47 seconds