# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 AVCCTRTAATTA MEME-1 AVCCTRTAATTA 1.2e-072 1.6e-075 -172.22 0.0 195 489 431 545 0.39877 6.6e-078 244 1 TGAGTCABY MEME-3 TGAGTCABY 3.3e-007 4.4e-010 -21.53 0.0 300 492 184 222 0.60976 1.8e-012 245 1 RCATGATMTCATTTAATCCTCAYAAMARBC MEME-5 RCATGATMTCATTTAATCCTCAYAAMARBC 1.6e-002 2.2e-005 -10.73 0.0 63 471 10 12 0.13376 9.3e-008 235 1 RTGATTTATGWGKTGMDRWAA MEME-8 RTGATTTATGWGKTGMDRWAA 3.6e-001 4.8e-004 -7.63 0.0 156 480 36 57 0.32500 2.0e-006 239 2 DTAATTR DREME-1 DTAATTR 1.4e-053 1.8e-056 -128.34 0.0 138 494 263 389 0.27935 7.4e-059 246 2 RTGACTCA DREME-2 RTGACTCA 4.4e-008 5.9e-011 -23.55 0.0 133 493 75 130 0.26978 2.4e-013 246 2 TAATSA DREME-3 TAATSA 2.6e-009 3.4e-012 -26.39 0.0 115 495 151 365 0.23232 1.4e-014 247 2 RTAAAY DREME-4 RTAAAY 1.3e-003 1.7e-006 -13.28 0.0 243 495 307 496 0.49091 6.9e-009 247 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 4.7e-011 6.3e-014 -30.40 0.0 118 490 217 545 0.24082 2.6e-016 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 3.6e-002 4.8e-005 -9.95 0.0 122 492 194 562 0.24797 2.0e-007 245 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 1.0e-004 1.4e-007 -15.81 0.0 263 491 382 577 0.53564 5.6e-010 245 3 M0415_1.02 (KLF9)_(Mus_musculus)_(DBD_1.00) VTAACGGN 1.9e0000 2.5e-003 -6.00 0.0 173 493 227 512 0.35091 1.0e-005 246 3 M0424_1.02 (SNAI3)_(Mus_musculus)_(DBD_0.75) NNTGACAKNN 2.1e-001 2.7e-004 -8.20 0.0 221 491 326 596 0.45010 1.1e-006 245 3 M0610_1.02 TET1 NNYRCGYWN 9.0e-001 1.2e-003 -6.73 0.0 320 492 298 394 0.65041 4.9e-006 245 3 M0629_1.02 DMRT3 MATGTATCAAN 3.7e0000 5.0e-003 -5.31 0.0 48 490 84 541 0.09796 2.0e-005 244 3 M0633_1.02 DMRT2 KAATKTATWN 2.1e-001 2.8e-004 -8.17 0.0 147 491 218 551 0.29939 1.2e-006 245 3 M0718_1.02 FOXK1 DNRTMAACAH 6.5e0000 8.7e-003 -4.74 0.0 65 491 113 587 0.13238 3.6e-005 245 3 M0719_1.02 FOXG1 RTAAACAW 2.4e0000 3.2e-003 -5.75 0.0 233 493 313 557 0.47262 1.3e-005 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 5.5e0000 7.4e-003 -4.91 0.0 235 489 328 581 0.48057 3.0e-005 244 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 1.2e-001 1.6e-004 -8.73 0.0 177 491 268 584 0.36049 6.6e-007 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 7.7e0000 1.0e-002 -4.58 0.0 237 491 333 590 0.48269 4.2e-005 245 3 M0890_1.02 LHX6 NYAATCAN 2.6e-019 3.4e-022 -49.43 0.0 265 493 437 589 0.53753 1.4e-024 246 3 M0891_1.02 TLX2 NTAAWNNNNN 7.0e0000 9.3e-003 -4.68 0.0 209 491 44 65 0.42566 3.8e-005 245 3 M0892_1.02 EMX1 NYTAATKAVN 4.9e-043 6.6e-046 -104.04 0.0 151 491 352 587 0.30754 2.7e-048 245 3 M0893_1.02 ZFHX2 NNTAATTANN 1.4e-041 1.8e-044 -100.71 0.0 153 491 342 564 0.31161 7.4e-047 245 3 M0894_1.02 LBX1 TTAATTAG 1.4e-037 1.8e-040 -91.50 0.0 157 493 345 578 0.31846 7.4e-043 246 3 M0896_1.02 VENTX TTAATTAG 2.1e-042 2.8e-045 -102.60 0.0 153 493 347 573 0.31034 1.1e-047 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 2.4e-009 3.2e-012 -26.47 0.0 177 491 300 581 0.36049 1.3e-014 245 3 M0900_1.02 SHOX HTAATTRV 1.2e-036 1.6e-039 -89.34 0.0 161 493 352 586 0.32657 6.4e-042 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.5e-035 1.9e-038 -86.83 0.0 160 492 340 567 0.32520 7.9e-041 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 1.7e-029 2.3e-032 -72.84 0.0 111 491 254 546 0.22607 9.5e-035 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 1.9e-038 2.6e-041 -93.47 0.0 164 492 356 578 0.33333 1.0e-043 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.2e-033 1.6e-036 -82.40 0.0 141 493 310 566 0.28600 6.7e-039 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 1.5e-032 2.0e-035 -79.90 0.0 162 494 322 538 0.32794 8.1e-038 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 6.6e-032 8.8e-035 -78.42 0.0 114 494 276 586 0.23077 3.6e-037 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 1.4e-013 1.8e-016 -36.24 0.0 150 492 279 581 0.30488 7.4e-019 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 2.2e-023 2.9e-026 -58.81 0.0 258 492 441 590 0.52439 1.2e-028 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 2.8e-040 3.8e-043 -97.68 0.0 164 492 361 581 0.33333 1.5e-045 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 2.7e-047 3.6e-050 -113.86 0.0 136 492 338 585 0.27642 1.5e-052 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 6.3e-005 8.4e-008 -16.29 0.0 254 492 128 170 0.51626 3.4e-010 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.6e-031 2.1e-034 -77.53 0.0 160 492 337 579 0.32520 8.7e-037 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATYA 3.2e-030 4.3e-033 -74.52 0.0 203 493 343 499 0.41176 1.8e-035 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 2.2e-036 3.0e-039 -88.72 0.0 150 492 335 582 0.30488 1.2e-041 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTVD 3.5e-001 4.7e-004 -7.67 0.0 328 492 449 595 0.66667 1.9e-006 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 1.9e-037 2.5e-040 -91.18 0.0 148 492 331 574 0.30081 1.0e-042 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.1e-029 1.5e-032 -73.26 0.0 160 492 328 568 0.32520 6.2e-035 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 1.3e-035 1.8e-038 -86.91 0.0 161 493 348 582 0.32657 7.3e-041 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.3e-033 1.7e-036 -82.34 0.0 160 492 346 589 0.32520 7.1e-039 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 1.9e-029 2.5e-032 -72.76 0.0 151 491 326 591 0.30754 1.0e-034 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 6.7e-015 9.0e-018 -39.25 0.0 163 491 300 580 0.33198 3.7e-020 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 9.8e-050 1.3e-052 -119.46 0.0 140 492 344 576 0.28455 5.4e-055 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 1.3e-002 1.8e-005 -10.94 0.0 116 490 178 523 0.23673 7.3e-008 244 3 M1868_1.02 GATA2 DSAGATAAGAAHYH 2.2e0000 2.9e-003 -5.85 0.0 261 487 349 558 0.53593 1.2e-005 243 3 M2267_1.02 CDX2 TTTTATKRCHB 5.1e-003 6.8e-006 -11.89 0.0 178 490 263 551 0.36327 2.8e-008 244 3 M2270_1.02 DUX4 TAAYYYAATCA 3.2e0000 4.2e-003 -5.47 0.0 118 490 164 508 0.24082 1.7e-005 244 3 M2278_1.02 FOS DVTGASTCATB 5.5e-003 7.3e-006 -11.82 0.0 320 490 403 528 0.65306 3.0e-008 244 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 7.1e-008 9.5e-011 -23.07 0.0 162 488 266 554 0.33197 3.9e-013 243 3 M2289_1.02 JUN DDRATGATGTMAT 2.1e-005 2.7e-008 -17.41 0.0 240 488 331 525 0.49180 1.1e-010 243 3 M2292_1.02 JUND DRTGASTCATS 6.5e-004 8.7e-007 -13.95 0.0 272 490 349 512 0.55510 3.6e-009 244 3 M2388_1.02 SREBF2 RTGGGGTGAY 8.8e-001 1.2e-003 -6.74 0.0 331 491 422 555 0.67413 4.8e-006 245 3 M4452_1.02 BATF TYYYRWWATGASTCA 6.4e0000 8.5e-003 -4.77 0.0 178 486 253 564 0.36626 3.5e-005 242 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 4.8e-002 6.4e-005 -9.65 0.0 320 486 402 529 0.65844 2.7e-007 242 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 2.8e0000 3.8e-003 -5.57 0.0 331 487 387 506 0.67967 1.6e-005 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 5.2e-001 6.9e-004 -7.27 0.0 270 486 380 585 0.55556 2.9e-006 242 3 M4600_1.02 GATA1 NSAGATAAGVV 2.8e-002 3.7e-005 -10.20 0.0 232 490 333 573 0.47347 1.5e-007 244 3 M4619_1.02 FOSL1 BGGTGASTCAT 1.3e-001 1.7e-004 -8.70 0.0 318 490 371 494 0.64898 6.9e-007 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 1.4e-001 1.8e-004 -8.62 0.0 214 486 283 518 0.44033 7.5e-007 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 1.1e0000 1.5e-003 -6.49 0.0 324 484 347 454 0.66942 6.3e-006 241 3 M4681_1.02 BACH2 TGCTGAGTCA 9.8e0000 1.3e-002 -4.33 0.0 197 491 233 475 0.40122 5.4e-005 245 3 M5284_1.02 ALX3 BNTAATTRGY 1.1e-038 1.4e-041 -94.06 0.0 185 491 383 577 0.37678 5.8e-044 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 6.0e-008 8.0e-011 -23.25 0.0 104 488 186 531 0.21311 3.3e-013 243 3 M5291_1.02 ARX YTAATTNRATTAN 3.0e-005 4.0e-008 -17.03 0.0 122 488 186 489 0.25000 1.7e-010 243 3 M5292_1.02 ATF4 RKATGAYGCAATM 1.1e0000 1.4e-003 -6.54 0.0 240 488 273 458 0.49180 5.9e-006 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 6.2e-005 8.3e-008 -16.31 0.0 223 487 179 278 0.45791 3.4e-010 243 3 M5294_1.02 BARHL2 NHTAAAYGNY 1.7e-003 2.3e-006 -12.99 0.0 117 491 199 579 0.23829 9.3e-009 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 2.0e-007 2.6e-010 -22.06 0.0 144 484 214 473 0.29752 1.1e-012 241 3 M5302_1.02 BATF3 TGATGACGTCATCA 2.7e-001 3.6e-004 -7.94 0.0 255 487 95 130 0.52361 1.5e-006 243 3 M5310_1.02 BSX NTAATBRS 3.3e-034 4.4e-037 -83.71 0.0 153 493 334 581 0.31034 1.8e-039 246 3 M5323_1.02 CREB3 KGRTGACGTCAYNV 4.4e-001 5.9e-004 -7.43 0.0 259 487 179 266 0.53183 2.4e-006 243 3 M5339_1.02 DLX1 NNTAATTRNN 3.7e-039 5.0e-042 -95.10 0.0 113 491 288 581 0.23014 2.0e-044 245 3 M5342_1.02 DLX4 NTAATTRN 3.7e-041 4.9e-044 -99.72 0.0 153 493 350 586 0.31034 2.0e-046 246 3 M5343_1.02 DLX5 NTAATTRN 7.5e-047 1.0e-049 -112.83 0.0 155 493 363 585 0.31440 4.1e-052 246 3 M5344_1.02 DLX6 NTAATTRB 2.0e-040 2.6e-043 -98.04 0.0 147 493 341 586 0.29817 1.1e-045 246 3 M5348_1.02 DRGX NTAATYHAATTAN 1.2e-007 1.6e-010 -22.57 0.0 198 488 287 510 0.40574 6.5e-013 243 3 M5349_1.02 DUXA NTRAYYTAATCAN 1.3e-002 1.8e-005 -10.94 0.0 118 488 184 536 0.24180 7.3e-008 243 3 M5388_1.02 EMX2 NYTAATTAVB 2.9e-048 3.9e-051 -116.08 0.0 161 491 368 572 0.32790 1.6e-053 245 3 M5390_1.02 EN1 VBTAATTRSB 6.9e-038 9.2e-041 -92.19 0.0 191 491 394 588 0.38900 3.7e-043 245 3 M5394_1.02 EN2 NNTAATTRVN 2.1e-040 2.8e-043 -97.97 0.0 115 491 294 582 0.23422 1.2e-045 245 3 M5414_1.02 ESX1 DNTAATTRRN 2.0e-041 2.6e-044 -100.34 0.0 185 491 394 588 0.37678 1.1e-046 245 3 M5427_1.02 EVX1 SNTAATTABB 2.4e-037 3.2e-040 -90.95 0.0 219 491 424 585 0.44603 1.3e-042 245 3 M5428_1.02 EVX2 NNTAATKABB 4.0e-037 5.3e-040 -90.44 0.0 151 491 340 585 0.30754 2.2e-042 245 3 M5446_1.02 FOXD4L2 RTAAACA 8.1e-002 1.1e-004 -9.13 0.0 234 494 337 586 0.47368 4.4e-007 246 3 M5460_1.02 FOXL1 RTAAACA 2.9e-001 3.8e-004 -7.87 0.0 234 494 331 580 0.47368 1.6e-006 246 3 M5480_1.02 GBX1 RBTAATTRGB 3.7e-036 4.9e-039 -88.20 0.0 183 491 374 575 0.37271 2.0e-041 245 3 M5481_1.02 GBX2 NYTAATTRSB 4.3e-040 5.7e-043 -97.26 0.0 149 491 341 581 0.30346 2.3e-045 245 3 M5493_1.02 GMEB2 KTRCGTAA 6.1e-001 8.2e-004 -7.11 0.0 321 493 296 390 0.65112 3.3e-006 246 3 M5502_1.02 GSX1 NBTAATKRSN 6.6e-034 8.9e-037 -83.01 0.0 163 491 351 589 0.33198 3.6e-039 245 3 M5503_1.02 GSX2 DYTAATKRVN 5.5e-035 7.4e-038 -85.50 0.0 147 491 332 589 0.29939 3.0e-040 245 3 M5517_1.02 HMBOX1 MYTAGTTAMS 5.6e0000 7.4e-003 -4.90 0.0 267 491 346 549 0.54379 3.0e-005 245 3 M5518_1.02 HMX1 NDTTAATTGNT 4.0e-015 5.4e-018 -39.76 0.0 136 490 264 575 0.27755 2.2e-020 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 1.6e-014 2.1e-017 -38.39 0.0 118 490 240 582 0.24082 8.7e-020 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 8.2e-014 1.1e-016 -36.75 0.0 116 490 237 588 0.23673 4.5e-019 244 3 M5541_1.02 HOXB2 NNTAATKANN 9.9e-047 1.3e-049 -112.54 0.0 161 491 372 586 0.32790 5.4e-052 245 3 M5542_1.02 HOXB3 NYTAATKRNN 1.3e-035 1.8e-038 -86.93 0.0 161 491 351 587 0.32790 7.2e-041 245 3 M5543_1.02 HOXB5 NHTAATKRNN 3.1e-041 4.2e-044 -99.89 0.0 161 491 365 594 0.32790 1.7e-046 245 3 M5544_1.02 HOXC10 DTTTWATKDB 3.8e-005 5.0e-008 -16.81 0.0 163 491 267 583 0.33198 2.0e-010 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 1.0e-006 1.4e-009 -20.39 0.0 158 490 259 562 0.32245 5.7e-012 244 3 M5551_1.02 HOXC12 TTTTATTRC 4.0e-006 5.4e-009 -19.04 0.0 124 492 218 577 0.25203 2.2e-011 245 3 M5553_1.02 HOXC13 CYAATAAAAH 8.7e-002 1.2e-004 -9.06 0.0 67 491 121 567 0.13646 4.7e-007 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 2.0e-003 2.7e-006 -12.82 0.0 153 491 228 533 0.31161 1.1e-008 245 3 M5557_1.02 HOXD12 GTAATAAAA 4.4e-008 5.9e-011 -23.56 0.0 242 492 369 575 0.49187 2.4e-013 245 3 M5563_1.02 HOXD8 VHWAATTADV 1.1e-009 1.5e-012 -27.24 0.0 115 491 221 585 0.23422 6.1e-015 245 3 M5581_1.02 IRX2 CWTGTCRTGTWN 1.1e-002 1.5e-005 -11.12 0.0 235 489 330 556 0.48057 6.1e-008 244 3 M5582_1.02 IRX5 SWTGTYRTGTWN 5.4e-004 7.3e-007 -14.14 0.0 235 489 347 576 0.48057 3.0e-009 244 3 M5583_1.02 ISL2 YTAAKTGC 1.5e-011 2.0e-014 -31.56 0.0 179 493 313 590 0.36308 8.0e-017 246 3 M5584_1.02 ISX YTAATCTAATTAR 1.9e-010 2.6e-013 -28.98 0.0 190 488 248 426 0.38934 1.1e-015 243 3 M5587_1.02 JDP2 ATGASTCAT 2.6e-005 3.5e-008 -17.17 0.0 134 492 204 505 0.27236 1.4e-010 245 3 M5594_1.02 LBX2 CTBRANSTRATTA 7.5e-003 1.0e-005 -11.52 0.0 132 488 215 576 0.27049 4.1e-008 243 3 M5602_1.02 LHX9 YTAATTRN 1.5e-035 2.0e-038 -86.81 0.0 147 493 331 586 0.29817 8.1e-041 246 3 M5604_1.02 LMX1A YTAATTAA 1.2e-038 1.7e-041 -93.89 0.0 153 493 337 568 0.31034 6.8e-044 246 3 M5605_1.02 LMX1B TTAATTRN 1.1e-038 1.4e-041 -94.07 0.0 161 493 351 575 0.32657 5.7e-044 246 3 M5623_1.02 MEOX1 VSTAATTAHC 3.9e-047 5.2e-050 -113.49 0.0 219 491 439 580 0.44603 2.1e-052 245 3 M5624_1.02 MEOX2 DSTAATTAWN 7.7e-048 1.0e-050 -115.10 0.0 201 491 424 587 0.40937 4.2e-053 245 3 M5631_1.02 MIXL1 NBTAATTRVN 5.5e-040 7.3e-043 -97.02 0.0 163 491 361 584 0.33198 3.0e-045 245 3 M5635_1.02 MNX1 TTTAATTRNH 6.0e-050 8.1e-053 -119.95 0.0 169 491 386 583 0.34420 3.3e-055 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 5.0e-011 6.7e-014 -30.34 0.0 141 483 218 462 0.29193 2.8e-016 241 3 M5672_1.02 NOTO NBTAATTARN 9.4e-020 1.3e-022 -50.42 0.0 109 491 242 587 0.22200 5.2e-025 245 3 M5704_1.02 PAX3 TAATYRATTA 1.1e-001 1.4e-004 -8.84 0.0 153 491 147 333 0.31161 5.9e-007 245 3 M5705_1.02 PAX4 YTAATTAG 2.3e-024 3.1e-027 -61.05 0.0 115 493 248 547 0.23327 1.2e-029 246 3 M5709_1.02 PAX7 WAATYRATTA 1.4e-001 1.9e-004 -8.58 0.0 97 491 122 409 0.19756 7.7e-007 245 3 M5714_1.02 PHOX2A TAATYYAATTA 5.0e-013 6.7e-016 -34.93 0.0 110 490 208 528 0.22449 2.8e-018 244 3 M5715_1.02 PHOX2B TAATYYAATTA 8.0e-013 1.1e-015 -34.48 0.0 106 490 204 534 0.21633 4.4e-018 244 3 M5735_1.02 POU3F3 WAATTWGCATAWW 3.7e-001 4.9e-004 -7.62 0.0 120 488 174 516 0.24590 2.0e-006 243 3 M5738_1.02 POU3F4 ATTWGCATA 9.5e0000 1.3e-002 -4.37 0.0 176 492 228 515 0.35772 5.2e-005 245 3 M5740_1.02 POU4F1 ATGMATAATTAATG 2.7e-001 3.6e-004 -7.93 0.0 173 487 233 510 0.35524 1.5e-006 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 1.9e-004 2.5e-007 -15.20 0.0 119 485 183 497 0.24536 1.0e-009 242 3 M5746_1.02 POU6F2 WTAATKAGST 7.6e-023 1.0e-025 -57.55 0.0 113 491 251 573 0.23014 4.1e-028 245 3 M5771_1.02 RAX DYTAATTRRY 3.5e-029 4.7e-032 -72.14 0.0 191 491 370 577 0.38900 1.9e-034 245 3 M5772_1.02 RAX2 BTAATTRR 1.6e-037 2.1e-040 -91.37 0.0 161 493 351 580 0.32657 8.5e-043 246 3 M5807_1.02 SHOX2 YTAATTRR 7.7e-036 1.0e-038 -87.47 0.0 161 493 348 582 0.32657 4.2e-041 246 3 M5941_1.02 UNCX NTAATYBAATTAN 3.3e-008 4.4e-011 -23.85 0.0 106 488 197 559 0.21721 1.8e-013 243 3 M5944_1.02 VAX1 YTAATTAN 5.9e-042 7.9e-045 -101.55 0.0 161 493 361 584 0.32657 3.2e-047 246 3 M5945_1.02 VAX2 YTAATTAN 3.7e-038 4.9e-041 -92.81 0.0 161 493 355 587 0.32657 2.0e-043 246 3 M5949_1.02 VSX1 YTAATTAN 9.9e-038 1.3e-040 -91.82 0.0 159 493 346 575 0.32252 5.4e-043 246 3 M5972_1.02 ZNF410 GANTATTATGGGATGKM 8.0e0000 1.1e-002 -4.54 0.0 148 484 73 160 0.30579 4.5e-005 241 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 5.1e-005 6.8e-008 -16.50 0.0 257 489 240 347 0.52556 2.8e-010 244 3 M6111_1.02 (ZNF652)_(Mus_musculus)_(DBD_1.00) NBAAAGGGTTAAH 1.0e0000 1.4e-003 -6.58 0.0 96 488 116 399 0.19672 5.7e-006 243 3 M6140_1.02 AIRE HTTGGWWWWWWTGGDTWH 3.2e0000 4.3e-003 -5.46 0.0 101 483 163 575 0.20911 1.8e-005 241 3 M6141_1.02 ALX1 TAATBYAATTAY 2.7e-009 3.6e-012 -26.35 0.0 133 489 234 553 0.27198 1.5e-014 244 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 6.6e0000 8.8e-003 -4.73 0.0 89 479 118 449 0.18580 3.7e-005 239 3 M6157_1.02 BARX2 TYRWTAATKR 1.2e-021 1.7e-024 -54.76 0.0 191 491 353 578 0.38900 6.8e-027 245 3 M6167_1.02 CDX1 HCATAAAD 7.1e-001 9.5e-004 -6.96 0.0 153 493 234 586 0.31034 3.9e-006 246 3 M6172_1.02 CEBPE VAKATTDCGHAA 8.5e0000 1.1e-002 -4.48 0.0 187 489 263 567 0.38241 4.7e-005 244 3 M6180_1.02 CREB1 RTGACGTMA 2.4e0000 3.3e-003 -5.73 0.0 266 492 344 545 0.54065 1.3e-005 245 3 M6182_1.02 CRX YTAATCHB 7.0e-002 9.3e-005 -9.28 0.0 223 493 325 585 0.45233 3.8e-007 246 3 M6186_1.02 DBP KVTTRCATAAB 3.8e-005 5.1e-008 -16.78 0.0 204 490 311 568 0.41633 2.1e-010 244 3 M6188_1.02 DLX2 ATAATTRB 4.2e-035 5.6e-038 -85.77 0.0 135 493 298 549 0.27383 2.3e-040 246 3 M6189_1.02 DLX3 GMTAATTRSW 1.1e-044 1.4e-047 -107.86 0.0 159 491 358 571 0.32383 5.9e-050 245 3 M6197_1.02 E4F1 YGTKACGTC 7.9e0000 1.1e-002 -4.55 0.0 290 492 288 421 0.58943 4.3e-005 245 3 M6228_1.02 FOSB CTGACTCAYV 6.8e-002 9.0e-005 -9.31 0.0 131 491 211 585 0.26680 3.7e-007 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 2.0e0000 2.7e-003 -5.92 0.0 176 488 259 579 0.36066 1.1e-005 243 3 M6238_1.02 FOXF1 WAAATAAACAW 2.4e0000 3.2e-003 -5.75 0.0 236 490 322 563 0.48163 1.3e-005 244 3 M6239_1.02 FOXF2 HWADGTAAACA 1.9e-001 2.6e-004 -8.25 0.0 178 490 260 562 0.36327 1.1e-006 244 3 M6256_1.02 GATA4 RSWGATAAV 1.5e-004 2.0e-007 -15.43 0.0 212 492 328 590 0.43089 8.1e-010 245 3 M6257_1.02 GATA5 WVANWGATAABTYRRHK 8.5e-002 1.1e-004 -9.08 0.0 206 484 299 564 0.42562 4.7e-007 241 3 M6258_1.02 GATA6 NWGATAA 2.6e-010 3.4e-013 -28.70 0.0 220 494 353 578 0.44534 1.4e-015 246 3 M6277_1.02 HLF SKRTTACRYAAYH 1.2e-006 1.5e-009 -20.29 0.0 206 488 275 475 0.42213 6.3e-012 243 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 8.5e-001 1.1e-003 -6.79 0.0 164 486 225 521 0.33745 4.7e-006 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 3.4e-004 4.5e-007 -14.61 0.0 135 487 215 544 0.27721 1.9e-009 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 3.5e-004 4.6e-007 -14.58 0.0 105 489 180 556 0.21472 1.9e-009 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 2.4e-002 3.3e-005 -10.33 0.0 206 490 302 572 0.42041 1.3e-007 244 3 M6292_1.02 HOXA5 CATTAATYAR 9.3e-020 1.2e-022 -50.44 0.0 141 491 276 558 0.28717 5.1e-025 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 5.9e-004 7.9e-007 -14.06 0.0 262 488 302 448 0.53689 3.2e-009 243 3 M6297_1.02 HOXB7 MATYAATCAA 9.3e-009 1.2e-011 -25.11 0.0 143 491 230 513 0.29124 5.1e-014 245 3 M6298_1.02 HOXB8 BMATTAATCAA 1.8e-006 2.4e-009 -19.85 0.0 142 490 221 514 0.28980 9.8e-012 244 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 1.8e-004 2.4e-007 -15.25 0.0 205 487 304 554 0.42094 9.8e-010 243 3 M6301_1.02 HOXD10 AATTAAARCA 1.1e-002 1.5e-005 -11.14 0.0 251 491 360 579 0.51120 5.9e-008 245 3 M6303_1.02 HOXD4 TTAATTKW 5.2e-012 7.0e-015 -32.59 0.0 121 493 233 576 0.24544 2.8e-017 246 3 M6304_1.02 HOXD9 HMATNAAWYT 2.3e-004 3.1e-007 -15.00 0.0 161 491 257 573 0.32790 1.3e-009 245 3 M6315_1.02 ISL1 SYTAATR 3.0e-004 4.1e-007 -14.72 0.0 186 494 282 565 0.37652 1.6e-009 246 3 M6328_1.02 LHX2 YRSDTTYAATWAG 5.1e-024 6.8e-027 -60.25 0.0 120 488 263 567 0.24590 2.8e-029 243 3 M6329_1.02 LHX3 AAAATTAATTARY 6.0e-007 8.0e-010 -20.95 0.0 92 488 156 486 0.18852 3.3e-012 243 3 M6333_1.02 MAFG MATGACT 2.7e-008 3.6e-011 -24.06 0.0 224 494 359 594 0.45344 1.5e-013 246 3 M6342_1.02 MEF2D BCTAWAAATAGC 6.5e0000 8.8e-003 -4.74 0.0 111 489 153 501 0.22699 3.6e-005 244 3 M6343_1.02 MEIS1 CDTWAAVCTGTCA 2.1e-001 2.8e-004 -8.20 0.0 294 488 379 541 0.60246 1.1e-006 243 3 M6347_1.02 MSX2 TAATTNK 2.3e-020 3.1e-023 -51.84 0.0 186 494 340 574 0.37652 1.2e-025 246 3 M6357_1.02 NANOG KTTAATGG 4.2e-004 5.6e-007 -14.40 0.0 133 493 217 565 0.26978 2.3e-009 246 3 M6359_1.02 NFE2L1 NATGACD 1.1e-007 1.4e-010 -22.69 0.0 142 494 254 598 0.28745 5.7e-013 246 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 1.1e-004 1.5e-007 -15.70 0.0 265 487 282 407 0.54415 6.3e-010 243 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 3.7e-004 5.0e-007 -14.51 0.0 147 489 227 539 0.30061 2.1e-009 244 3 M6376_1.02 NKX2-5 TYAAGTG 6.3e-002 8.4e-005 -9.39 0.0 126 494 207 594 0.25506 3.4e-007 246 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 1.3e-007 1.7e-010 -22.50 0.0 130 488 219 536 0.26639 7.0e-013 243 3 M6380_1.02 NOBOX HTAATTRSY 3.6e-039 4.8e-042 -95.15 0.0 190 492 390 579 0.38618 1.9e-044 245 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 4.5e0000 6.0e-003 -5.12 0.0 385 483 471 544 0.79710 2.5e-005 241 3 M6410_1.02 PAX6 TSAWGCGTRAA 4.6e-001 6.1e-004 -7.40 0.0 370 490 474 567 0.75510 2.5e-006 244 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 6.5e0000 8.7e-003 -4.75 0.0 204 486 289 574 0.41975 3.6e-005 242 3 M6415_1.02 PDX1 CTAATTACY 1.5e-033 2.0e-036 -82.19 0.0 220 492 402 558 0.44715 8.2e-039 245 3 M6419_1.02 PKNOX1 HATCARTCAABYB 2.0e0000 2.7e-003 -5.93 0.0 266 488 360 567 0.54508 1.1e-005 243 3 M6426_1.02 POU3F2 CATRAATWWT 6.0e-001 8.1e-004 -7.12 0.0 135 491 208 573 0.27495 3.3e-006 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 9.4e-015 1.3e-017 -38.92 0.0 220 488 349 540 0.45082 5.2e-020 243 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 3.4e-003 4.5e-006 -12.30 0.0 208 486 306 561 0.42798 1.9e-008 242 3 M6439_1.02 PRRX1 TAAYCTG 2.6e0000 3.5e-003 -5.65 0.0 158 494 233 577 0.31984 1.4e-005 246 3 M6440_1.02 PRRX2 YTAATTR 7.0e-036 9.4e-039 -87.56 0.0 142 494 318 570 0.28745 3.8e-041 246 3 M6510_1.02 TEF TGTTTATRTAAMTK 2.8e-004 3.7e-007 -14.81 0.0 267 487 381 567 0.54825 1.5e-009 243 3 M6534_1.02 VSX2 WDAGCTAATTA 5.9e-012 7.9e-015 -32.47 0.0 90 490 177 524 0.18367 3.2e-017 244 3 M6546_1.02 ZFHX3 ATTAWTAATTA 2.7e-009 3.6e-012 -26.36 0.0 96 490 174 510 0.19592 1.5e-014 244 3 M6555_1.02 ZNF333 BKATAATGA 1.2e-021 1.6e-024 -54.81 0.0 114 492 241 548 0.23171 6.4e-027 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).