# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:11 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:13 PST 2017) # host: wotan # when: Mon Dec 18 16:19:18 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.175 C 0.329 G 0.321 T 0.174 MOTIF GGGCGGRR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GGGCGGRR YYCCGCCC 281 63 1.9e-046 5.7e-042 # GGGCGGGG CCCCGCCC 164 28 7.2e-029 2.1e-024 # GGGCGGAG CTCCGCCC 88 10 3.2e-018 9.6e-014 # GGGCGGGA TCCCGCCC 60 18 4.5e-007 1.3e-002 # GGGCGGAA TTCCGCCC 31 10 6.0e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 381 E= 5.7e-042 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.354331 0.000000 0.645669 0.000000 0.259843 0.000000 0.740157 0.000000 MOTIF GTAGTYY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GTAGTYY RRACTAC 69 6 1.0e-015 3.0e-011 # GTAGTTC GAACTAC 21 1 4.7e-006 1.4e-001 # GTAGTCC GGACTAC 26 3 6.1e-006 1.8e-001 # GTAGTCT AGACTAC 13 0 1.1e-004 3.4e+000 # GTAGTTT AAACTAC 12 2 6.2e-003 1.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 75 E= 3.0e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.560000 0.000000 0.440000 0.000000 0.666667 0.000000 0.333333 MOTIF GGCGKGKC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGCGKGKC GMCMCGCC 107 25 6.1e-015 1.8e-010 # GGCGTGGC GCCACGCC 44 6 8.8e-009 2.6e-004 # GGCGGGGC GCCCCGCC 41 11 1.2e-005 3.6e-001 # GGCGTGTC GACACGCC 12 1 1.6e-003 4.8e+001 # GGCGGGTC GACCCGCC 20 7 8.9e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 123 E= 1.8e-010 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.504065 0.495935 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.739837 0.260163 0.000000 1.000000 0.000000 0.000000 MOTIF CCAATSA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CCAATSA TSATTGG 54 4 5.4e-013 1.6e-008 # CCAATCA TGATTGG 33 1 1.3e-009 3.9e-005 # CCAATGA TCATTGG 28 3 1.8e-006 5.2e-002 letter-probability matrix: alength= 4 w= 7 nsites= 67 E= 1.6e-008 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.552239 0.447761 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTTCCKS DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTTCCKS SMGGAAG 114 38 1.6e-011 4.7e-007 # CTTCCGG CCGGAAG 37 6 5.5e-007 1.6e-002 # CTTCCTC GAGGAAG 31 11 1.2e-003 3.5e+001 # CTTCCGC GCGGAAG 34 14 2.3e-003 6.7e+001 # CTTCCTG CAGGAAG 20 7 8.9e-003 2.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 127 E= 4.7e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.566929 0.433071 0.000000 0.551181 0.448819 0.000000 MOTIF GTCACGY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GTCACGY RCGTGAC 31 1 5.3e-009 1.5e-004 # GTCACGT ACGTGAC 16 0 1.4e-005 3.9e-001 # GTCACGC GCGTGAC 16 1 1.3e-004 3.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 34 E= 1.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 MOTIF TGGGAR DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TGGGAR YTCCCA 159 85 6.9e-008 2.0e-003 # TGGGAG CTCCCA 106 52 2.5e-006 7.2e-002 # TGGGAA TTCCCA 58 34 6.1e-003 1.7e+002 letter-probability matrix: alength= 4 w= 6 nsites= 184 E= 2.0e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.331522 0.000000 0.668478 0.000000 MOTIF ACCGCCY DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ACCGCCY RGGCGGT 74 25 1.4e-007 4.0e-003 # ACCGCCC GGGCGGT 52 20 6.6e-005 1.8e+000 # ACCGCCT AGGCGGT 23 5 4.0e-004 1.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 81 E= 4.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.703704 0.000000 0.296296 MOTIF ATTGGY DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ATTGGY RCCAAT 68 24 1.0e-006 2.9e-002 # ATTGGT ACCAAT 32 7 2.7e-005 7.5e-001 # ATTGGC GCCAAT 40 18 2.2e-003 6.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 76 E= 2.9e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.552632 0.000000 0.447368 MOTIF AAGATGGC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AAGATGGC GCCATCTT 19 0 1.7e-006 4.5e-002 # AAGATGGC GCCATCTT 19 0 1.7e-006 4.5e-002 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.5e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 162.14 seconds