Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa
Database contains 600 sequences, 120000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GGGCGGRR | 8 | GGGCGGGG |
GTAGTYY | 7 | GTAGTCC |
GGCGKGKC | 8 | GGCGGGGC |
CCAATSA | 7 | CCAATCA |
CTTCCKS | 7 | CTTCCGC |
GTCACGY | 7 | GTCACGC |
TGGGAR | 6 | TGGGAG |
ACCGCCY | 7 | ACCGCCC |
ATTGGY | 6 | ATTGGC |
AAGATGGC | 8 | AAGATGGC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background):
A 0.175 C 0.325 G 0.325 T 0.175
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
CCAATSA | DREME-4 | chr16 | + | 2429196 | 2429202 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 6737685 | 6737691 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 13747819 | 13747825 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 13952355 | 13952361 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 18204325 | 18204331 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr20 | + | 20712920 | 20712926 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr6 | + | 26596858 | 26596864 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr16 | + | 30370685 | 30370691 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr1 | + | 32817548 | 32817554 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 32972038 | 32972044 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr20 | + | 33720351 | 33720357 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr20 | + | 33720435 | 33720441 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr20 | + | 33720476 | 33720482 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr21 | + | 39312467 | 39312473 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr22 | + | 40636780 | 40636786 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 41264132 | 41264138 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr1 | + | 45491353 | 45491359 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr21 | + | 46323907 | 46323913 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 48364311 | 48364317 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 49766699 | 49766705 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr16 | + | 50741959 | 50741965 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr6 | + | 52284857 | 52284863 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr12 | + | 53379916 | 53379922 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr17 | + | 58517924 | 58517930 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr18 | + | 62187099 | 62187105 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr15 | + | 70099699 | 70099705 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr15 | + | 75454093 | 75454099 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr7 | + | 100586254 | 100586260 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr7 | + | 100586381 | 100586387 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr7 | + | 100586412 | 100586418 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr14 | + | 103715512 | 103715518 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr12 | + | 113221359 | 113221365 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr7 | + | 151028318 | 151028324 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr7 | + | 151028359 | 151028365 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr7 | + | 151028397 | 151028403 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr6 | + | 166627373 | 166627379 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr6 | + | 166627473 | 166627479 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr5 | + | 177497735 | 177497741 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr5 | + | 178153925 | 178153931 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr2 | + | 218270261 | 218270267 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr16 | - | 1343157 | 1343163 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr17 | - | 1716386 | 1716392 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr16 | - | 28950802 | 28950808 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr16 | - | 30610470 | 30610476 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr6 | - | 30617383 | 30617389 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr16 | - | 30634459 | 30634465 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr1 | - | 31644953 | 31644959 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr1 | - | 33037030 | 33037036 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr21 | - | 33491602 | 33491608 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr21 | - | 33642253 | 33642259 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | - | 35628948 | 35628954 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr8 | - | 37762534 | 37762540 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr8 | - | 37762565 | 37762571 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | - | 38850463 | 38850469 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | - | 38899861 | 38899867 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | - | 41264065 | 41264071 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | - | 42076088 | 42076094 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr21 | - | 46324071 | 46324077 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr17 | - | 47896121 | 47896127 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr6 | - | 52284819 | 52284825 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr6 | - | 53545228 | 53545234 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr18 | - | 62522964 | 62522970 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr17 | - | 63621996 | 63622002 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr17 | - | 63622090 | 63622096 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr15 | - | 70099733 | 70099739 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr10 | - | 74826345 | 74826351 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr3 | - | 88059120 | 88059126 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr14 | - | 91060732 | 91060738 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr10 | - | 102918245 | 102918251 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr1 | - | 117060146 | 117060152 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr1 | - | 117060177 | 117060183 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr3 | - | 133573490 | 133573496 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr5 | - | 176389117 | 176389123 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr2 | - | 224585747 | 224585753 | 3.2e-05 | 0.1 | CCAATCA |
CCAATSA | DREME-4 | chr19 | + | 1205556 | 1205562 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 1490827 | 1490833 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 6425223 | 6425229 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | + | 7214498 | 7214504 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 8592452 | 8592458 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr2 | + | 9631051 | 9631057 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr2 | + | 9631103 | 9631109 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 17309511 | 17309517 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr22 | + | 23839257 | 23839263 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr16 | + | 28950862 | 28950868 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr16 | + | 30370766 | 30370772 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr22 | + | 31662292 | 31662298 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 32675229 | 32675235 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 35744993 | 35744999 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 35870138 | 35870144 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 40570899 | 40570905 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 40576821 | 40576827 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr7 | + | 44848314 | 44848320 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 57633112 | 57633118 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr2 | + | 62705599 | 62705605 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | + | 63550235 | 63550241 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | + | 63550353 | 63550359 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr10 | + | 74151127 | 74151133 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | + | 82023057 | 82023063 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | + | 82023108 | 82023114 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | + | 82023158 | 82023164 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr1 | + | 155002212 | 155002218 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr6 | + | 166627421 | 166627427 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr1 | + | 169893988 | 169893994 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 2151761 | 2151767 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr20 | - | 3889244 | 3889250 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr8 | - | 10840038 | 10840044 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr16 | - | 30610439 | 30610445 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr6 | - | 30617351 | 30617357 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 35628986 | 35628992 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 36141414 | 36141420 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr22 | - | 38705587 | 38705593 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 38850321 | 38850327 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 38899913 | 38899919 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 41264095 | 41264101 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 42268834 | 42268840 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 42268874 | 42268880 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 48714184 | 48714190 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 48714281 | 48714287 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | - | 48993420 | 48993426 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | - | 58518022 | 58518028 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr17 | - | 81223074 | 81223080 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr12 | - | 121399975 | 121399981 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr5 | - | 138543330 | 138543336 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr1 | - | 155244744 | 155244750 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr5 | - | 160119634 | 160119640 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr1 | - | 205750265 | 205750271 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr1 | - | 234724221 | 234724227 | 6.4e-05 | 0.117 | CCAATGA |
CCAATSA | DREME-4 | chr19 | + | 6425266 | 6425272 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr17 | + | 7214552 | 7214558 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr19 | + | 10717771 | 10717777 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr19 | + | 10717899 | 10717905 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr21 | + | 33641910 | 33641916 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr7 | + | 44848345 | 44848351 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr1 | + | 45491293 | 45491299 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr12 | + | 56360403 | 56360409 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr12 | + | 57694069 | 57694075 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr17 | + | 75456530 | 75456536 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr3 | + | 88059140 | 88059146 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr12 | + | 95217693 | 95217699 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr7 | + | 107168927 | 107168933 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr1 | + | 230979013 | 230979019 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr16 | - | 1343241 | 1343247 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr19 | - | 4472090 | 4472096 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr19 | - | 8525717 | 8525723 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr3 | - | 14948436 | 14948442 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr17 | - | 17972685 | 17972691 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr19 | - | 32972140 | 32972146 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr19 | - | 38374480 | 38374486 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr19 | - | 40610142 | 40610148 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr17 | - | 47896163 | 47896169 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr18 | - | 74292125 | 74292131 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr6 | - | 89080668 | 89080674 | 9.82e-05 | 0.147 | CCAATTA |
CCAATSA | DREME-4 | chr10 | - | 102245300 | 102245306 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr10 | - | 102743766 | 102743772 | 9.82e-05 | 0.147 | CCAATAA |
CCAATSA | DREME-4 | chr5 | - | 173057253 | 173057259 | 9.82e-05 | 0.147 | CCAATTA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background --motif CCAATSA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/fimo_out_3 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP3.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.