# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:57 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SP2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:58 PDT 2018) # host: kadru # when: Thu May 10 16:58:11 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.185 C 0.320 G 0.315 T 0.180 MOTIF CCAATVR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CCAATVR YBATTGG 347 37 1.0e-090 3.2e-086 # CCAATCA TGATTGG 130 4 3.7e-037 1.1e-032 # CCAATGA TCATTGG 82 8 6.0e-018 1.8e-013 # CCAATGG CCATTGG 86 11 5.7e-017 1.8e-012 # CCAATCG CGATTGG 71 7 1.6e-015 4.9e-011 # CCAATAG CTATTGG 43 4 7.3e-010 2.2e-005 # CCAATAA TTATTGG 19 3 3.9e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 461 E= 3.2e-086 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.136659 0.483731 0.379610 0.000000 0.540130 0.000000 0.459870 0.000000 MOTIF CCGCCYH DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCGCCYH DRGGCGG 405 123 7.2e-063 2.1e-058 # CCGCCCC GGGGCGG 204 48 5.9e-030 1.7e-025 # CCGCCCA TGGGCGG 85 15 2.7e-014 7.8e-010 # CCGCCTC GAGGCGG 103 31 1.4e-011 4.1e-007 # CCGCCTT AAGGCGG 60 16 8.2e-008 2.4e-003 # CCGCCTA TAGGCGG 26 1 1.6e-007 4.7e-003 # CCGCCCT AGGGCGG 77 28 3.1e-007 9.1e-003 letter-probability matrix: alength= 4 w= 7 nsites= 620 E= 2.1e-058 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.677419 0.000000 0.322581 0.190323 0.564516 0.000000 0.245161 MOTIF CCARTCC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CCARTCC GGAYTGG 68 13 5.0e-011 1.4e-006 # CCAATCC GGATTGG 47 8 2.1e-008 6.0e-004 # CCAGTCC GGACTGG 21 5 1.1e-003 3.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 70 E= 1.4e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACBTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CACBTC GAVGTG 135 62 7.4e-009 2.1e-004 # CACTTC GAAGTG 47 16 3.8e-005 1.1e+000 # CACCTC GAGGTG 71 38 6.1e-004 1.7e+001 # CACGTC GACGTG 30 12 3.4e-003 9.7e+001 letter-probability matrix: alength= 4 w= 6 nsites= 154 E= 2.1e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.474026 0.194805 0.331169 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 21.20 seconds