# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:08 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:10 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:17:24 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.207 C 0.289 G 0.297 T 0.207


MOTIF ACAVGT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACAVGT     ACBTGT        440         67   2.0e-114   6.2e-110
#           ACAGGT     ACCTGT        356         37   6.1e-095   2.0e-090
#           ACAAGT     ACTTGT         93         24   5.0e-012   1.6e-007
#           ACACGT     ACGTGT         24          8   3.1e-003   1.0e+002

letter-probability matrix: alength= 4 w= 6 nsites= 541 E= 6.2e-110
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.177449 0.046211 0.776340 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CTGTTGCD DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTTGCD   HGCAACAG         72          6   1.4e-016   4.2e-012
#         CTGTTGCT   AGCAACAG         40          3   8.5e-010   2.6e-005
#         CTGTTGCA   TGCAACAG         20          2   5.3e-005   1.6e+000
#         CTGTTGCG   CGCAACAG         12          1   1.6e-003   5.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 4.2e-012
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.270270 0.000000 0.162162 0.567568


MOTIF RGGAAR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      RGGAAR     YTTCCY        214        117   2.3e-010   6.9e-006
#           GGGAAG     CTTCCC         86         38   3.3e-006   1.0e-001
#           GGGAAA     TTTCCC         65         29   7.2e-005   2.2e+000
#           AGGAAG     CTTCCT         69         40   2.4e-003   7.2e+001
#           AGGAAA     TTTCCT         47         26   7.6e-003   2.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 277 E= 6.9e-006
0.451264 0.000000 0.548736 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.407942 0.000000 0.592058 0.000000


MOTIF CARCAGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CARCAGG    CCTGYTG         81         33   1.4e-006   4.1e-002
#          CAGCAGG    CCTGCTG         53         22   1.5e-004   4.4e+000
#          CAACAGG    CCTGTTG         30         12   3.4e-003   1.0e+002

letter-probability matrix: alength= 4 w= 7 nsites= 85 E= 4.1e-002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.364706 0.000000 0.635294 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 59.12 seconds