# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:15 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SCRT1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:15 PST 2017)
#        host: kadru
#        when: Mon Dec 18 16:11:41 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.222 C 0.267 G 0.285 T 0.226


MOTIF ACARGT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACARGT     ACYTGT        463         78   7.9e-120   2.5e-115
#           ACAGGT     ACCTGT        400         54   9.6e-103   3.1e-098
#           ACAAGT     ACTTGT         92         29   6.4e-010   2.0e-005

letter-probability matrix: alength= 4 w= 6 nsites= 636 E= 2.5e-115
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.155660 0.000000 0.844340 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CCTGTTGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTGTTGC   GCAACAGG         39          5   4.3e-008   1.3e-003
#         CCTGTTGC   GCAACAGG         39          5   4.3e-008   1.3e-003

letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.3e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATYCCAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ATYCCAG    CTGGRAT         31          3   2.8e-007   8.5e-003
#          ATCCCAG    CTGGGAT         18          2   1.8e-004   5.6e+000
#          ATTCCAG    CTGGAAT         13          1   8.7e-004   2.7e+001

letter-probability matrix: alength= 4 w= 7 nsites= 31 E= 8.5e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.580645 0.000000 0.419355
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCCGCCYC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGCCYC   GRGGCGGG         33          5   1.5e-006   4.7e-002
#         CCCGCCTC   GAGGCGGG         15          1   2.4e-004   7.3e+000
#         CCCGCCCC   GGGGCGGG         19          4   1.2e-003   3.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.7e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.527778 0.000000 0.472222
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 31.53 seconds