# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SALL2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SALL2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SALL2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SALL2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:12:58 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/SALL2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:12:59 PDT 2018) # host: kadru # when: Thu May 10 17:02:21 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.239 C 0.247 G 0.272 T 0.242 MOTIF CCGGAAS DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CCGGAAS STTCCGG 27 1 8.2e-008 2.3e-003 # CCGGAAC GTTCCGG 15 0 2.8e-005 7.8e-001 # CCGGAAG CTTCCGG 16 1 1.3e-004 3.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 33 E= 2.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.484848 0.515152 0.000000 MOTIF ATTACCW DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATTACCW WGGTAAT 34 4 2.1e-007 5.7e-003 # ATTACCT AGGTAAT 14 0 5.7e-005 1.6e+000 # ATTACCA TGGTAAT 21 4 4.0e-004 1.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 5.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.560000 0.000000 0.000000 0.440000 MOTIF CABAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CABAAA TTTVTG 114 53 2.2e-007 6.0e-003 # CACAAA TTTGTG 62 30 3.5e-004 9.6e+000 # CAGAAA TTTCTG 35 17 7.6e-003 2.1e+002 # CATAAA TTTATG 23 9 9.2e-003 2.5e+002 letter-probability matrix: alength= 4 w= 6 nsites= 139 E= 6.0e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.546763 0.273381 0.179856 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGAAGGAW DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGAAGGAW WTCCTTCC 40 7 3.4e-007 9.2e-003 # GGAAGGAA TTCCTTCC 31 6 1.6e-005 4.3e-001 # GGAAGGAT ATCCTTCC 13 1 8.7e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 9.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.855556 0.000000 0.000000 0.144444 MOTIF MTGASTCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST MTGASTCA TGASTCAK 30 3 5.2e-007 1.4e-002 # CTGACTCA TGAGTCAG 14 0 5.7e-005 1.5e+000 # ATGAGTCA TGACTCAT 16 1 1.3e-004 3.4e+000 # ATGACTCA TGAGTCAT 13 2 3.5e-003 9.6e+001 # CTGAGTCA TGACTCAG 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.4e-002 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGCGGAR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGCGGAR YTCCGCC 40 8 1.1e-006 2.9e-002 # GGCGGAG CTCCGCC 29 6 4.7e-005 1.3e+000 # GGCGGAA TTCCGCC 13 2 3.5e-003 9.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 2.9e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.282609 0.000000 0.717391 0.000000 MOTIF GGTGGTGA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GGTGGTGA TCACCACC 40 8 1.1e-006 2.9e-002 # GGTGGTGA TCACCACC 40 8 1.1e-006 2.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.9e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 37.55 seconds