Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TCGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 GCCATATGTT
M0178_1.02 10 AACAGCTGTT
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTC
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGG
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTG
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GGTGCGGGAC
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 AATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 GCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 CCCCGCGGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AATAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 GTTAATTAAC
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATTACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATT
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CCAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACC
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCCAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 ACCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGC
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 GTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ACTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTCTT
M1601_1.02 9 ATTGTTCTC
M1605_1.02 10 ATTCATCTTT
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACACTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATGATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATTTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCT
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAAA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCCA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 GGAACATTCTGTTC
M4438_1.02 15 AGGTCACGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CGCCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 GTGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CCATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCAGC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACAGAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCGGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGACTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGCGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCACCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGT
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 ACCACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTAGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 CTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAA
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CACAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACC
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACAGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 TTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAT
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGCCCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATCCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 GGTTGGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGTCACGTGCAGAGGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTGTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCCC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTT
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GATAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAGGGCGCGAAAC
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAACG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 GGCCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATG
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTATT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 CTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTC
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ACTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACGTAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATCATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 CCATTAAACT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGCGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CGTAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGAGTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 CTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TCTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTTTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAAGTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAA
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCCAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAGA
M6459_1.02 14 AACCACAAACCCCA
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 CCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTGGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTCTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCCCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAG
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 CCCCAGGTGG
M6529_1.02 7 TCTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GGGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAGTCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.226 C 0.274 G 0.274 T 0.226


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M4536_1.02 E2F1 chr8 - 74350343 74350357 1.29e-07 0.0463 AAGGAGGGCGCGCGG
M4536_1.02 E2F1 chr1 + 230426478 230426492 1.9e-07 0.0463 gggcggggcgcgcgg
M4536_1.02 E2F1 chr15 - 74995551 74995565 2.48e-07 0.0463 GGGGAGCGCGCGCGC
M4536_1.02 E2F1 chr6 + 117907139 117907153 7.9e-07 0.0967 GAGGAGAGCGCGCAG
M4536_1.02 E2F1 chr14 - 57865632 57865646 9.5e-07 0.0967 CGGGCGGGCGCGCGG
M4536_1.02 E2F1 chr9 - 37784988 37785002 1.04e-06 0.0967 CAGCAGGGCGCGCGC
M4536_1.02 E2F1 chr9 + 132582127 132582141 1.28e-06 0.102 AGAAGGCGCGCGCGG
M4536_1.02 E2F1 chr1 + 209937854 209937868 1.84e-06 0.128 CGGGAGGGCGCCCGG
M4536_1.02 E2F1 chr7 + 101165599 101165613 2.06e-06 0.128 AAGGGGAGCGCGCGG
M4536_1.02 E2F1 chr14 - 57865667 57865681 2.68e-06 0.133 GAGGTGGGCGCGCAG
M4536_1.02 E2F1 chr10 + 49762305 49762319 2.74e-06 0.133 GGGGTGCGCGCGCGC
M4536_1.02 E2F1 chr1 + 231162609 231162623 3.04e-06 0.133 AGGAGGCGCGCGCTG
M4536_1.02 E2F1 chr13 + 43786021 43786035 3.1e-06 0.133 AGGCAGGGCGCGCTC
M4536_1.02 E2F1 chrX - 49200288 49200302 3.39e-06 0.134 GGAGGGGGCGCGAGG
M4536_1.02 E2F1 chr7 + 101165601 101165615 3.8e-06 0.134 GGGGAGCGCGCGGGG
M4536_1.02 E2F1 chr17 + 44308565 44308579 3.84e-06 0.134 GAGGGGGGCGGGCGG
M4536_1.02 E2F1 chr10 + 102419633 102419647 5.07e-06 0.134 GGCGGGGGCGCGCGG
M4536_1.02 E2F1 chr15 + 74995536 74995550 5.12e-06 0.134 CGGGCGCGCGCGCGC
M4536_1.02 E2F1 chr9 + 132582125 132582139 5.12e-06 0.134 GGAGAAGGCGCGCGC
M4536_1.02 E2F1 chr10 + 102419754 102419768 5.15e-06 0.134 GGACGAGGCGCGCGG
M4536_1.02 E2F1 chr19 + 40218300 40218314 5.2e-06 0.134 GGAGAGGGCGGGAGG
M4536_1.02 E2F1 chr12 - 113065432 113065446 5.44e-06 0.134 GGAAGGCGCGGGCGG
M4536_1.02 E2F1 chr22 + 30802859 30802873 5.58e-06 0.134 cgggcgggcgggcgg
M4536_1.02 E2F1 chr17 + 29390230 29390244 5.73e-06 0.134 AGGGCGCGCGCGCGC
M4536_1.02 E2F1 chr19 - 45496502 45496516 6.07e-06 0.136 CGAGGACGCGCGCGG
M4536_1.02 E2F1 chr7 + 146115963 146115977 7.13e-06 0.153 GGGAGAGGCGCGCGC
M4536_1.02 E2F1 chr22 - 44975511 44975525 8.25e-06 0.165 CAGGAGGGCGCCCAG
M4536_1.02 E2F1 chr22 - 50600302 50600316 8.56e-06 0.165 GGGAGGCGCGGGAGG
M4536_1.02 E2F1 chrX + 49200241 49200255 8.69e-06 0.165 gggcggcgcgcgcTC
M4536_1.02 E2F1 chr10 - 25174571 25174585 8.83e-06 0.165 CGGGGGCGCGGGAGG
M4536_1.02 E2F1 chr20 + 63653455 63653469 9.66e-06 0.173 agcgagggcgggcgg
M4536_1.02 E2F1 chr15 - 74995549 74995563 1.03e-05 0.173 GGAGCGCGCGCGCGC
M4536_1.02 E2F1 chr19 + 17681738 17681752 1.04e-05 0.173 CAGAGGCGCGGGCAG
M4536_1.02 E2F1 chr10 - 132185495 132185509 1.09e-05 0.173 GTGGAGGGCGCGCGG
M4536_1.02 E2F1 chr13 - 43786024 43786038 1.12e-05 0.173 CGGGAGCGCGCCCTG
M4536_1.02 E2F1 chr5 + 174045633 174045647 1.14e-05 0.173 GGAGGGGGCGCGAGC
M4536_1.02 E2F1 chr19 - 3971354 3971368 1.15e-05 0.173 AGGAGAGGCGGGCGG
M4536_1.02 E2F1 chr15 + 74995512 74995526 1.21e-05 0.178 CGCGGGCGCGCGCAG
M4536_1.02 E2F1 chr10 + 102419635 102419649 1.24e-05 0.178 CGGGGGCGCGCGGGG
M4536_1.02 E2F1 chr22 + 30802868 30802882 1.33e-05 0.181 gggcggagcgggcgC
M4536_1.02 E2F1 chr14 + 60981100 60981114 1.36e-05 0.181 GAAGAGGGCGCGCGT
M4536_1.02 E2F1 chr1 - 6245282 6245296 1.38e-05 0.181 GAACAGCGCGGGCGC
M4536_1.02 E2F1 chr5 - 140402545 140402559 1.4e-05 0.181 AGGGTGGGCGGGAGG
M4536_1.02 E2F1 chr3 - 192727634 192727648 1.42e-05 0.181 CGGGGGAGCGGGAGG
M4536_1.02 E2F1 chr10 + 102419556 102419570 1.5e-05 0.183 GGCCAGGGCGGGCAG
M4536_1.02 E2F1 chr10 - 132294575 132294589 1.53e-05 0.183 GAGAAGGGCGCCAGG
M4536_1.02 E2F1 chr20 + 35227027 35227041 1.54e-05 0.183 GGGCAGGGCGGGGGG
M4536_1.02 E2F1 chr12 - 44877010 44877024 1.61e-05 0.187 GCAGGGGGCGCGCGG
M4536_1.02 E2F1 chr1 + 231162607 231162621 1.75e-05 0.2 AGAGGAGGCGCGCGC
M4536_1.02 E2F1 chr1 + 32886659 32886673 1.8e-05 0.201 GGGAAGCGCGCGGTG
M4536_1.02 E2F1 chr7 - 101165622 101165636 1.86e-05 0.203 GGGCGGGGCGCGCCC
M4536_1.02 E2F1 chr14 - 57865636 57865650 1.88e-05 0.203 CGGACGGGCGGGCGC
M4536_1.02 E2F1 chr20 + 63653459 63653473 2.04e-05 0.215 agggcgggcgggagg
M4536_1.02 E2F1 chr20 - 5911553 5911567 2.12e-05 0.22 GAGGAAGGCGCGATG
M4536_1.02 E2F1 chr10 - 132185493 132185507 2.27e-05 0.231 GGAGGGCGCGCGGGG
M4536_1.02 E2F1 chr5 + 140400994 140401008 2.46e-05 0.236 CAGAAAGGCGGGAGG
M4536_1.02 E2F1 chr16 - 1188904 1188918 2.49e-05 0.236 ACGCAGGGCGGGCAG
M4536_1.02 E2F1 chr19 - 51422150 51422164 2.56e-05 0.236 GGACAGCGCGGGCTC
M4536_1.02 E2F1 chr5 - 16179192 16179206 2.58e-05 0.236 GGCCGGCGCGGGCGG
M4536_1.02 E2F1 chr8 - 61288329 61288343 2.63e-05 0.236 AGGCTGAGCGGGCGC
M4536_1.02 E2F1 chr5 - 141883472 141883486 2.66e-05 0.236 CGGAGAAGCGCGAAG
M4536_1.02 E2F1 chr15 + 72319980 72319994 2.72e-05 0.236 ggagagggcgggggg
M4536_1.02 E2F1 chr3 - 48662023 48662037 2.72e-05 0.236 GGGCACCGCGCGCTG
M4536_1.02 E2F1 chr8 + 74350720 74350734 2.79e-05 0.236 CGGGGACGCGCCCGG
M4536_1.02 E2F1 chr19 - 45496552 45496566 2.79e-05 0.236 GCGGGGGGCGCGCTG
M4536_1.02 E2F1 chr22 - 50600311 50600325 2.88e-05 0.236 GGGCGAGGCGGGAGG
M4536_1.02 E2F1 chr17 - 2749978 2749992 2.99e-05 0.236 CGCCAGGGCGGGAGG
M4536_1.02 E2F1 chr7 - 146115970 146115984 3.01e-05 0.236 CAAGGAGGCGCGCGC
M4536_1.02 E2F1 chr6 + 158536427 158536441 3.04e-05 0.236 CGGATGGGCGCGGAG
M4536_1.02 E2F1 chr6 - 117907159 117907173 3.06e-05 0.236 GCGGGGCGCGGGCGG
M4536_1.02 E2F1 chr6 - 154039521 154039535 3.12e-05 0.236 CGGCCGGGCGGGCAC
M4536_1.02 E2F1 chr1 + 37764425 37764439 3.13e-05 0.236 GCGGAGCGCGCCCGG
M4536_1.02 E2F1 chr14 - 51095130 51095144 3.25e-05 0.236 CGGGCTGGCGCGCGG
M4536_1.02 E2F1 chr2 - 219308296 219308310 3.37e-05 0.236 CGGGACAGCGCGAGG
M4536_1.02 E2F1 chr2 + 219308505 219308519 3.39e-05 0.236 AAAGAGGGCGCCAGG
M4536_1.02 E2F1 chr19 - 45496500 45496514 3.39e-05 0.236 AGGACGCGCGCGGGG
M4536_1.02 E2F1 chr19 - 42143718 42143732 3.45e-05 0.236 AAGAAGCGCGGGCGT
M4536_1.02 E2F1 chr11 + 46392614 46392628 3.49e-05 0.236 CCGGAGAGCGGGCAG
M4536_1.02 E2F1 chr6 + 25652144 25652158 3.55e-05 0.236 CAGGACAGCGCgcag
M4536_1.02 E2F1 chr15 + 74995510 74995524 3.57e-05 0.236 GGCGCGGGCGCGCGC
M4536_1.02 E2F1 chr11 - 46392733 46392747 3.57e-05 0.236 GGCCAGGGCGCGGGG
M4536_1.02 E2F1 chr17 + 2749733 2749747 3.62e-05 0.236 gggcggggcgggggg
M4536_1.02 E2F1 chr19 + 12832563 12832577 3.64e-05 0.236 CAGGAGCGCGCGAGA
M4536_1.02 E2F1 chr19 + 55217361 55217375 3.64e-05 0.236 GGGGAAGGCGGGATG
M4536_1.02 E2F1 chr15 - 74995553 74995567 3.72e-05 0.236 GCGGGGAGCGCGCGC
M4536_1.02 E2F1 chrX + 49200239 49200253 3.76e-05 0.236 gggggcggcgcgcgc
M4536_1.02 E2F1 chr11 - 123654048 123654062 3.81e-05 0.236 GGCGAGAGCGGGCGC
M4536_1.02 E2F1 chr3 + 48662020 48662034 3.83e-05 0.236 CAGCAGCGCGCGGTG
M4536_1.02 E2F1 chr10 - 49762358 49762372 3.88e-05 0.236 CAGGGGCGCGCGCCC
M4536_1.02 E2F1 chr10 + 49762213 49762227 3.92e-05 0.236 GGAGGGGGCGGGCCG
M4536_1.02 E2F1 chr4 + 8580491 8580505 4.01e-05 0.236 CAGCTGCGCGCGAAC
M4536_1.02 E2F1 chr7 - 83162614 83162628 4.03e-05 0.236 GAGGAGGGAGCGCGG
M4536_1.02 E2F1 chr17 + 29390232 29390246 4.06e-05 0.236 GGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 + 74995538 74995552 4.06e-05 0.236 GGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr1 + 230426574 230426588 4.06e-05 0.236 GCGCAGCGCGGGAGG
M4536_1.02 E2F1 chr10 + 73786354 73786368 4.08e-05 0.236 cgcgtgcgcgcgcTG
M4536_1.02 E2F1 chr10 + 133080162 133080176 4.27e-05 0.236 CGGAAGGGCGGGGGC
M4536_1.02 E2F1 chr10 - 100680939 100680953 4.45e-05 0.236 GGAGGGCGCGGGCCG
M4536_1.02 E2F1 chr15 + 74995540 74995554 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 + 74995542 74995556 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 + 74995544 74995558 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 + 74995546 74995560 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 - 74995539 74995553 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 - 74995541 74995555 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 - 74995543 74995557 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr15 - 74995545 74995559 4.47e-05 0.236 CGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr19 - 33684464 33684478 4.6e-05 0.237 CGGATGGGCGCGAGT
M4536_1.02 E2F1 chr1 - 3502084 3502098 4.73e-05 0.237 AGGAGGCGCGGGGGG
M4536_1.02 E2F1 chr10 - 73786347 73786361 4.81e-05 0.237 CGCACGCGCGCGCGC
M4536_1.02 E2F1 chr15 - 74995547 74995561 4.84e-05 0.237 AGCGCGCGCGCGCGC
M4536_1.02 E2F1 chr16 + 24255930 24255944 4.86e-05 0.237 GGGAAGGGCGGGGTG
M4536_1.02 E2F1 chr10 + 49762238 49762252 4.86e-05 0.237 CGGGCGGGCGGGCCG
M4536_1.02 E2F1 chr9 + 132582208 132582222 4.89e-05 0.237 GGCGAGGGCGCGGAG
M4536_1.02 E2F1 chr10 - 26216228 26216242 4.89e-05 0.237 CGGCGAGGCGGGAAG
M4536_1.02 E2F1 chr16 - 67661019 67661033 4.92e-05 0.237 GGGCCGGGCGGGCCG
M4536_1.02 E2F1 chr14 - 92923439 92923453 4.95e-05 0.237 GGCAGGGGCGCCCGG
M4536_1.02 E2F1 chr17 + 29390228 29390242 4.98e-05 0.237 TGAGGGCGCGCGCGC
M4536_1.02 E2F1 chrX - 49200244 49200258 5.01e-05 0.237 AACGAGCGCGCGCCG
M4536_1.02 E2F1 chr1 + 230426482 230426496 5.07e-05 0.238 ggggcgcgcggccgg
M4536_1.02 E2F1 chr8 - 41896154 41896168 5.21e-05 0.241 GGACAGGGCGGCAGG
M4536_1.02 E2F1 chr10 - 49762310 49762324 5.24e-05 0.241 GCACGGCGCGCGCGC
M4536_1.02 E2F1 chr6 - 117907161 117907175 5.27e-05 0.241 GAGCGGGGCGCGGGC
M4536_1.02 E2F1 chr16 - 22813448 22813462 5.35e-05 0.243 GAGGCACGCGCGCAC
M4536_1.02 E2F1 chr10 - 132185607 132185621 5.66e-05 0.255 GCGGGGAGCGCGCAC
M4536_1.02 E2F1 chr17 + 44308663 44308677 5.81e-05 0.259 GGGGAGGGAGCGAGG
M4536_1.02 E2F1 chr9 - 37784986 37785000 5.87e-05 0.259 GCAGGGCGCGCGCTG
M4536_1.02 E2F1 chr19 - 35644870 35644884 5.94e-05 0.259 GGAGCACGCGCGAAG
M4536_1.02 E2F1 chr1 + 230426588 230426602 5.97e-05 0.259 GGGGAGGGCGGGACC
M4536_1.02 E2F1 chr4 - 8580882 8580896 6e-05 0.259 GAGCGGCGCGCCCAC
M4536_1.02 E2F1 chr20 + 44210454 44210468 6.03e-05 0.259 GGGGACCGCGGGAGG
M4536_1.02 E2F1 chr5 + 175797057 175797071 6.13e-05 0.262 CGGCCGGGCGGGCTC
M4536_1.02 E2F1 chr9 + 135156898 135156912 6.39e-05 0.267 AGAGCGAGCGGGAGG
M4536_1.02 E2F1 chr19 + 45496638 45496652 6.42e-05 0.267 CGCCAGAGCGCGGGG
M4536_1.02 E2F1 chr1 + 235649033 235649047 6.49e-05 0.267 GCCGGGCGCGCGCGG
M4536_1.02 E2F1 chr2 - 219543990 219544004 6.63e-05 0.267 GGCAGGGGCGGGCTG
M4536_1.02 E2F1 chr10 - 73786343 73786357 6.7e-05 0.267 CGCGCGCGCGCGCAC
M4536_1.02 E2F1 chr13 + 27792648 27792662 6.85e-05 0.267 GCAGAGGGCGGGCTG
M4536_1.02 E2F1 chr16 - 30526249 30526263 6.85e-05 0.267 AGGGAGGGAGCGAGG
M4536_1.02 E2F1 chr1 + 145451951 145451965 6.88e-05 0.267 gagggaggcgggaag
M4536_1.02 E2F1 chr10 - 123659482 123659496 6.88e-05 0.267 GGGGCGGGCGCGGTG
M4536_1.02 E2F1 chr9 - 137884897 137884911 6.88e-05 0.267 GAGGGAGGCGGGAAG
M4536_1.02 E2F1 chr19 - 42313579 42313593 6.92e-05 0.267 AGGAGGGGCGGCAGG
M4536_1.02 E2F1 chr10 - 123659437 123659451 6.92e-05 0.267 GGCCGAGGCGGGCGG
M4536_1.02 E2F1 chr16 + 89926353 89926367 7.1e-05 0.267 GGGCCGGGCGGGAAC
M4536_1.02 E2F1 chr19 - 35879995 35880009 7.2e-05 0.267 GGAAGGCGCGGCCAG
M4536_1.02 E2F1 chr11 - 123654088 123654102 7.28e-05 0.267 GGGGTGGGCGGGGAG
M4536_1.02 E2F1 chr17 + 44308793 44308807 7.32e-05 0.267 GGGGGCAGCGGGCGG
M4536_1.02 E2F1 chr10 - 26216310 26216324 7.32e-05 0.267 GGGAAGTGCGGGCGG
M4536_1.02 E2F1 chr8 - 61288178 61288192 7.32e-05 0.267 GGGAAAGGCGGGGAG
M4536_1.02 E2F1 chr19 + 40218358 40218372 7.4e-05 0.267 GGGGACAGCGCGCCG
M4536_1.02 E2F1 chr10 - 26216507 26216521 7.52e-05 0.267 CAGGAAAGCGCGGAG
M4536_1.02 E2F1 chr22 - 50600476 50600490 7.52e-05 0.267 GCGCGGGGCGGGAGG
M4536_1.02 E2F1 chr9 + 37785419 37785433 7.6e-05 0.267 Gggccgggcgcggtg
M4536_1.02 E2F1 chr22 + 50271125 50271139 7.6e-05 0.267 CGGGCAGGCGCGGGG
M4536_1.02 E2F1 chr11 - 123654044 123654058 7.6e-05 0.267 AGAGCGGGCGCGGAG
M4536_1.02 E2F1 chr10 + 132185774 132185788 7.64e-05 0.267 GGGGAGGGCGCGGCC
M4536_1.02 E2F1 chr10 - 73786345 73786359 7.64e-05 0.267 CACGCGCGCGCGCGC
M4536_1.02 E2F1 chr8 - 41896133 41896147 7.87e-05 0.267 GGGCAGAGCGGGTGG
M4536_1.02 E2F1 chr4 + 1410764 1410778 7.95e-05 0.267 GAAGAGGGCGGCAGG
M4536_1.02 E2F1 chr17 + 19378192 19378206 7.95e-05 0.267 TGGGGACGCGCGCGC
M4536_1.02 E2F1 chr4 - 8580654 8580668 7.95e-05 0.267 CGCAGGGGCGCGGGG
M4536_1.02 E2F1 chr20 - 64162155 64162169 7.95e-05 0.267 CAGAAGAGCGGCCGC
M4536_1.02 E2F1 chr7 - 83162625 83162639 7.95e-05 0.267 GGACGCGGCGCGAGG
M4536_1.02 E2F1 chr20 + 10219532 10219546 7.99e-05 0.267 gcgggaggcgggcgg
M4536_1.02 E2F1 chr1 - 2468290 2468304 8.08e-05 0.267 GAGCGGAGCGGGATG
M4536_1.02 E2F1 chr12 - 2752982 2752996 8.08e-05 0.267 GAGCTGAGCGCGGAG
M4536_1.02 E2F1 chr7 - 101165574 101165588 8.12e-05 0.267 TGGAGGCGCGGGCGC
M4536_1.02 E2F1 chr1 + 1299103 1299117 8.16e-05 0.267 GGGAGGGGCGGCCAC
M4536_1.02 E2F1 chr2 + 73291377 73291391 8.24e-05 0.267 AAGAAGAGCGGGGAG
M4536_1.02 E2F1 chr22 - 30802733 30802747 8.29e-05 0.267 GAGAGCCGCGCGAGG
M4536_1.02 E2F1 chr9 + 37027737 37027751 8.33e-05 0.267 GGGCGGGGCGGGGGC
M4536_1.02 E2F1 chr10 - 118596218 118596232 8.33e-05 0.267 CCGCTGAGCGCGCTG
M4536_1.02 E2F1 chr15 + 74995506 74995520 8.37e-05 0.267 TGGCGGCGCGGGCGC
M4536_1.02 E2F1 chr5 - 181170036 181170050 8.46e-05 0.267 AGAGGCGGCGCGAGG
M4536_1.02 E2F1 chr18 + 28175637 28175651 8.5e-05 0.267 CCGGAGCGCGCCAGG
M4536_1.02 E2F1 chr21 + 43322892 43322906 8.54e-05 0.267 ggggagggagcgaag
M4536_1.02 E2F1 chr10 + 102419758 102419772 8.54e-05 0.267 GAGGCGCGCGGCCGG
M4536_1.02 E2F1 chr20 + 35227208 35227222 8.59e-05 0.267 AGGGGCAGCGGGCGG
M4536_1.02 E2F1 chr20 + 63653451 63653465 8.59e-05 0.267 agggagcgagggcgg
M4536_1.02 E2F1 chr1 - 230426901 230426915 8.67e-05 0.267 CGGCGAGGCGGGCTC
M4536_1.02 E2F1 chr7 + 8434077 8434091 8.76e-05 0.267 AGGGACAGCGCCCGG
M4536_1.02 E2F1 chr13 + 27792611 27792625 8.76e-05 0.267 AGGGAAAGCGCGTGG
M4536_1.02 E2F1 chr10 + 49398091 49398105 8.8e-05 0.267 GAGGACGGCGCGCTC
M4536_1.02 E2F1 chr11 - 45899631 45899645 8.85e-05 0.267 GGGAGGGGCGAGCGG
M4536_1.02 E2F1 chr7 - 146115968 146115982 8.85e-05 0.267 AGGAGGCGCGCGCCT
M4536_1.02 E2F1 chr1 - 21659395 21659409 8.94e-05 0.267 GTGGCGAGCGCGCGG
M4536_1.02 E2F1 chr14 + 81435888 81435902 8.98e-05 0.267 AGGCGGGGCGCGGCG
M4536_1.02 E2F1 chr14 - 24052549 24052563 8.98e-05 0.267 GGGAGGGGCGGGCTT
M4536_1.02 E2F1 chr5 - 140400975 140400989 9.12e-05 0.268 GAGCCTAGCGCGCGG
M4536_1.02 E2F1 chr19 + 47472023 47472037 9.17e-05 0.268 gGCGGAGGCGGGCAG
M4536_1.02 E2F1 chr10 - 49762308 49762322 9.17e-05 0.268 ACGGCGCGCGCGCAC
M4536_1.02 E2F1 chr17 + 49707780 49707794 9.3e-05 0.271 AAGCAGAGCGGCAGG
M4536_1.02 E2F1 chr16 + 29900085 29900099 9.49e-05 0.275 CAGCGGCGCGCGGAC
M4536_1.02 E2F1 chr7 - 83162934 83162948 9.54e-05 0.275 AGAGGGCGCGGGCGA
M4536_1.02 E2F1 chr19 - 40218363 40218377 9.63e-05 0.276 CAGCGCGGCGCGCTG
M4536_1.02 E2F1 chr1 - 21659391 21659405 9.68e-05 0.276 CGAGCGCGCGGCCGG
M4536_1.02 E2F1 chr5 - 136365413 136365427 9.83e-05 0.279 CAGAGGAGCGCGCTT
M4536_1.02 E2F1 chr20 + 63653532 63653546 9.98e-05 0.279 ggaaggagcgggggg
M4536_1.02 E2F1 chr10 - 100680941 100680955 9.98e-05 0.279 TGGGAGGGCGCGGGC
M4536_1.02 E2F1 chr1 - 183416913 183416927 9.98e-05 0.279 ATGCAGGGCGCGCCG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_10 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif M4536_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_10 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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