# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:15 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:15 PST 2017)
#        host: kadru
#        when: Mon Dec 18 16:11:06 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.201 C 0.302 G 0.296 T 0.200


MOTIF DCTGTCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     DCTGTCC    GGACAGH        462         34   9.0e-158   2.7e-153
#          GCTGTCC    GGACAGC        380         18   2.3e-126   6.9e-122
#          TCTGTCC    GGACAGA         60         12   1.5e-009   4.4e-005
#          ACTGTCC    GGACAGT         46          7   1.0e-008   3.1e-004

letter-probability matrix: alength= 4 w= 7 nsites= 522 E= 2.7e-153
0.090038 0.000000 0.793103 0.116858
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAGNACC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CAGNACC    GGTNCTG        429         52   3.8e-120   1.1e-115
#          CAGCACC    GGTGCTG        316         25   2.3e-087   6.8e-083
#          CAGGACC    GGTCCTG         85         15   2.7e-014   7.8e-010
#          CAGTACC    GGTACTG         30          1   1.1e-008   3.1e-004
#          CAGAACC    GGTTCTG         31         12   2.3e-003   6.8e+001

letter-probability matrix: alength= 4 w= 7 nsites= 506 E= 1.1e-115
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.063241 0.699605 0.177866 0.059289
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTGCTGAW DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGCTGAW   WTCAGCAC         29          2   1.7e-007   4.9e-003
#         GTGCTGAA   TTCAGCAC         22          2   1.5e-005   4.3e-001
#         GTGCTGAT   ATCAGCAC          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 4.9e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.741935 0.000000 0.000000 0.258065


# Stopping reason: E-value threshold exceeded
#    Running time: 26.69 seconds