Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.fa
Database contains 3000 sequences, 1500000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TCGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 ACCATATGTT
M0178_1.02 10 AACAGCTGTT
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTC
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGG
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTG
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GTTGCGGGAC
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 AATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 GCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 CCCCGCGGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AATAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 GTTAATTAAC
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATTACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATT
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CCAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACC
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCTAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 ACCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGC
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 GTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ACTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTCTT
M1601_1.02 9 ATTGTTCTC
M1605_1.02 10 ATTCATCTTT
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACATTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATGATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATTTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCT
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAAA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCCA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 GGAACATTCTGTTC
M4438_1.02 15 AGGTCACGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CGCCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 ATGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CCATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCATC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACAGAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCGGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGACTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGCGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCACCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGT
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 ACCACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTAGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 CTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAA
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CACAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACC
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACAGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 TTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAT
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGACCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATCCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 GGTTGGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGTCACGTGCAGAGGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTGTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCCC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTT
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GATAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAGGGCGCGAAAC
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAACG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 GACCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATG
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTATT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 CTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTA
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ACTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACGTAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATCATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 CCATTAAACT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGCGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CATAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGAGTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 CTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TCTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTTTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAAGTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAA
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCCAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAAA
M6459_1.02 14 AACCACAAACCCCA
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 CCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTGGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTCTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCCCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAG
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 CCCCAGGTGG
M6529_1.02 7 TCTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GGGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAATCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.245 C 0.255 G 0.255 T 0.245


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M6453_1.02 RFX3 chr19 - 32537861 32537874 3.72e-09 0.0109 TTACCATGGCAACC
M6453_1.02 RFX3 chr19 - 28396489 28396502 4.43e-08 0.0432 TTGCCATGGCAACA
M6453_1.02 RFX3 chr19 + 28396491 28396504 4.43e-08 0.0432 ttgccatggcaaca
M6453_1.02 RFX3 chr17 - 58755670 58755683 7.45e-08 0.0544 TCGCCATGGCAACC
M6453_1.02 RFX3 chr1 - 63523524 63523537 1.52e-07 0.0664 TCACCATGGCAACT
M6453_1.02 RFX3 chr16 - 89924602 89924615 1.56e-07 0.0664 TTTCCATGGCAACA
M6453_1.02 RFX3 chr20 + 347853 347866 1.67e-07 0.0664 TTCCCATGGCAACC
M6453_1.02 RFX3 chr9 - 125746076 125746089 1.82e-07 0.0664 TCGCCATGGTAACC
M6453_1.02 RFX3 chr19 + 32537863 32537876 3.27e-07 0.106 TTGCCATGGTAACT
M6453_1.02 RFX3 chr17 - 46778104 46778117 6.76e-07 0.18 TAACCATAGCAACC
M6453_1.02 RFX3 chr16 + 89924604 89924617 6.8e-07 0.18 TTGCCATGGAAACC
M6453_1.02 RFX3 chr1 - 183471813 183471826 8.26e-07 0.18 CTGCCATGGCAACT
M6453_1.02 RFX3 chr14 - 105474308 105474321 8.75e-07 0.18 TTTCCATAGCAACA
M6453_1.02 RFX3 chr10 + 102419528 102419541 8.82e-07 0.18 TTACTATGGCAACT
M6453_1.02 RFX3 chr1 + 29752209 29752222 9.22e-07 0.18 TTCCCATAGCAACC
M6453_1.02 RFX3 chr9 + 125746078 125746091 1.43e-06 0.242 TTACCATGGCGACC
M6453_1.02 RFX3 chr10 - 102419526 102419539 1.43e-06 0.242 TTGCCATAGTAACT
M6453_1.02 RFX3 chr3 + 42149102 42149115 1.49e-06 0.242 TTTCTATGGCAACG
M6453_1.02 RFX3 chr1 - 232863984 232863997 1.6e-06 0.242 ATACCATGACAACA
M6453_1.02 RFX3 chr1 + 11845900 11845913 1.78e-06 0.242 ACTCCATGGCAACA
M6453_1.02 RFX3 chr12 - 108468303 108468316 1.84e-06 0.242 TTTCCATGACAACA
M6453_1.02 RFX3 chr5 - 111365348 111365361 1.84e-06 0.242 TTTCCATGACAACA
M6453_1.02 RFX3 chr19 + 45953149 45953162 1.9e-06 0.242 TCGTCATGGCAACC
M6453_1.02 RFX3 chr1 + 146039502 146039515 2.04e-06 0.244 CTACCATGGAAACA
M6453_1.02 RFX3 chr20 - 347851 347864 2.08e-06 0.244 TTGCCATGGGAACC
M6453_1.02 RFX3 chr8 + 25028175 25028188 3.12e-06 0.351 gtactatGGTAaca
M6453_1.02 RFX3 chr5 - 13554001 13554014 3.5e-06 0.379 GTGCTATGGCAACA
M6453_1.02 RFX3 chr17 + 58755672 58755685 4.2e-06 0.438 TTGCCATGGCGACA
M6453_1.02 RFX3 chr1 - 94100843 94100856 4.52e-06 0.446 TCACGATGGCAACG
M6453_1.02 RFX3 chr7 - 132135351 132135364 4.58e-06 0.446 TTTCCATGGGAACC
M6453_1.02 RFX3 chr9 - 77576027 77576040 5e-06 0.463 TCACCATGGTTACT
M6453_1.02 RFX3 chr2 + 219218666 219218679 5.07e-06 0.463 TCACCATGGCAATG
M6453_1.02 RFX3 chr9 + 132114504 132114517 5.42e-06 0.473 ccaccatggctaca
M6453_1.02 RFX3 chr3 - 186307998 186308011 5.61e-06 0.473 ATACCATGGGAACA
M6453_1.02 RFX3 chr14 + 105474310 105474323 5.8e-06 0.473 TTGCTATGGAAACC
M6453_1.02 RFX3 chr7 - 140541571 140541584 5.83e-06 0.473 GCACCATAGTAACT
M6453_1.02 RFX3 chr1 - 183471783 183471796 6.13e-06 0.484 TTGTCATAGTAACC
M6453_1.02 RFX3 chr13 - 94551772 94551785 6.83e-06 0.515 TCACCATGTTAACC
M6453_1.02 RFX3 chr9 + 23829736 23829749 7.31e-06 0.515 ATACCGTGGCAACC
M6453_1.02 RFX3 chr3 - 42149100 42149113 7.56e-06 0.515 TTGCCATAGAAACT
M6453_1.02 RFX3 chr16 + 47787825 47787838 7.63e-06 0.515 ctcccatgacaacc
M6453_1.02 RFX3 chr19 - 53903332 53903345 7.72e-06 0.515 AATCCATGGTAACA
M6453_1.02 RFX3 chr1 - 75617129 75617142 7.72e-06 0.515 ACACCCTGGTAACC
M6453_1.02 RFX3 chr9 - 101537005 101537018 7.75e-06 0.515 TTTCAATGGCAACC
M6453_1.02 RFX3 chr19 - 8966128 8966141 8.23e-06 0.532 CCACCATGGGAACC
M6453_1.02 RFX3 chr17 + 38667382 38667395 8.38e-06 0.532 ttgctatgatAACC
M6453_1.02 RFX3 chr17 + 32261937 32261950 9.2e-06 0.56 TTTCCATGGCAGCC
M6453_1.02 RFX3 chr11 + 65354314 65354327 9.2e-06 0.56 TGTCCATGGTAACC
M6453_1.02 RFX3 chr10 - 4141420 4141433 9.83e-06 0.582 TAACCATAGAAACA
M6453_1.02 RFX3 chr19 + 28396523 28396536 1.01e-05 0.582 tttccatggcaatg
M6453_1.02 RFX3 chr5 + 116559825 116559838 1.02e-05 0.582 gtaccatgccaaca
M6453_1.02 RFX3 chr12 - 109736747 109736760 1.19e-05 0.626 TCGCCATGGGAACT
M6453_1.02 RFX3 chr1 + 183471815 183471828 1.2e-05 0.626 TTGCCATGGCAGCT
M6453_1.02 RFX3 chr13 + 91058390 91058403 1.24e-05 0.626 tcaccatggcacct
M6453_1.02 RFX3 chr2 - 218992036 218992049 1.24e-05 0.626 TCACCATGGCACCT
M6453_1.02 RFX3 chr20 - 34058979 34058992 1.27e-05 0.626 TCTCCCTGGTAACA
M6453_1.02 RFX3 chr1 + 9593589 9593602 1.28e-05 0.626 TTTCCCTAGCAACA
M6453_1.02 RFX3 chr1 + 151166274 151166287 1.29e-05 0.626 TTGCTCTGGCAACA
M6453_1.02 RFX3 chr11 - 128288384 128288397 1.29e-05 0.626 AAGCCATGGAAACC
M6453_1.02 RFX3 chr1 + 50268309 50268322 1.32e-05 0.626 GCTCCATAGCAACT
M6453_1.02 RFX3 chr2 + 234335696 234335709 1.35e-05 0.626 TTCCCACGGCAACC
M6453_1.02 RFX3 chr9 + 19720677 19720690 1.37e-05 0.626 TTACAATGACAACC
M6453_1.02 RFX3 chr2 - 219218664 219218677 1.4e-05 0.626 TTGCCATGGTGACT
M6453_1.02 RFX3 chr1 + 242847469 242847482 1.42e-05 0.626 CTGCCATAGAAACA
M6453_1.02 RFX3 chr17 + 46778106 46778119 1.44e-05 0.626 ttgctatggttACG
M6453_1.02 RFX3 chr1 + 232085191 232085204 1.44e-05 0.626 caaccatgataaca
M6453_1.02 RFX3 chr9 + 94490474 94490487 1.48e-05 0.626 atgccatggcaccc
M6453_1.02 RFX3 chr17 + 34706123 34706136 1.5e-05 0.626 AAACCATGACAACT
M6453_1.02 RFX3 chr20 + 53997380 53997393 1.5e-05 0.626 ttcccattgcaaca
M6453_1.02 RFX3 chr11 - 62980498 62980511 1.5e-05 0.626 TCACCATAGCAATC
M6453_1.02 RFX3 chr17 + 58166153 58166166 1.67e-05 0.688 TTACCTTGACAACA
M6453_1.02 RFX3 chr20 - 43040769 43040782 1.7e-05 0.692 CAGCCATGGCTACC
M6453_1.02 RFX3 chr5 - 141041266 141041279 1.73e-05 0.694 GCACCATGGCCACG
M6453_1.02 RFX3 chr1 - 231108049 231108062 1.76e-05 0.696 TCTCCATGCCAACG
M6453_1.02 RFX3 chr1 - 52002516 52002529 1.79e-05 0.696 GCACCATGGTTACT
M6453_1.02 RFX3 chr16 + 2861129 2861142 1.91e-05 0.71 TTTCCATGTTAACA
M6453_1.02 RFX3 chr22 - 17058171 17058184 1.93e-05 0.71 CAGCCATGGAAACA
M6453_1.02 RFX3 chr11 - 22337626 22337639 1.96e-05 0.71 ATGCTATGGAAACC
M6453_1.02 RFX3 chr10 + 67781356 67781369 1.97e-05 0.71 ttgccatagccaca
M6453_1.02 RFX3 chr14 + 73949900 73949913 1.98e-05 0.71 TCTCCAAGGCAACG
M6453_1.02 RFX3 chr18 + 37565125 37565138 2.03e-05 0.71 TCTCCATGGCATCG
M6453_1.02 RFX3 chr19 + 32537786 32537799 2.08e-05 0.71 TCTCCATGGTGACC
M6453_1.02 RFX3 chr16 + 1189032 1189045 2.11e-05 0.71 CCACCATGGCCACA
M6453_1.02 RFX3 chr1 - 232405165 232405178 2.11e-05 0.71 GCACCATGGCCACA
M6453_1.02 RFX3 chr8 - 102175894 102175907 2.13e-05 0.71 GTGCCATGGGAACT
M6453_1.02 RFX3 chr5 + 140711440 140711453 2.13e-05 0.71 TTTCCATGGtaaaa
M6453_1.02 RFX3 chr5 - 140711438 140711451 2.13e-05 0.71 TTACCATGGAAAGG
M6453_1.02 RFX3 chr9 - 136497110 136497123 2.14e-05 0.71 ACCCCATGGCTACC
M6453_1.02 RFX3 chr7 + 141079495 141079508 2.17e-05 0.713 ATTCCATGATAACT
M6453_1.02 RFX3 chr3 - 9704461 9704474 2.24e-05 0.716 CCCCCATGGCTACC
M6453_1.02 RFX3 chr6 - 98657998 98658011 2.25e-05 0.716 CTATCATGGAAACA
M6453_1.02 RFX3 chr2 + 94925381 94925394 2.26e-05 0.716 gcaccatggcacca
M6453_1.02 RFX3 chr12 + 108468305 108468318 2.29e-05 0.716 TTGTCATGGAAACT
M6453_1.02 RFX3 chr19 - 45953147 45953160 2.32e-05 0.716 TTGCCATGACGACG
M6453_1.02 RFX3 chr12 + 15435988 15436001 2.35e-05 0.716 TCATcatggaaact
M6453_1.02 RFX3 chr1 + 16493138 16493151 2.41e-05 0.716 TCGCTATGGTTACC
M6453_1.02 RFX3 chr18 - 46542729 46542742 2.41e-05 0.716 TGGCCATGACAACA
M6453_1.02 RFX3 chr20 + 49485840 49485853 2.44e-05 0.716 tccccatggccacc
M6453_1.02 RFX3 chr17 + 79420585 79420598 2.44e-05 0.716 TCTCCATGGCACCA
M6453_1.02 RFX3 chr12 + 109736749 109736762 2.45e-05 0.716 TTCCCATGGCGACT
M6453_1.02 RFX3 chr10 + 4141422 4141435 2.48e-05 0.717 tttctatggttacc
M6453_1.02 RFX3 chr1 + 35557445 35557458 2.54e-05 0.724 TCTCCATGCTAACC
M6453_1.02 RFX3 chr1 + 230861578 230861591 2.55e-05 0.724 tggtcatggcaacc
M6453_1.02 RFX3 chr5 + 107372960 107372973 2.62e-05 0.737 TTTCCCTGGCTACC
M6453_1.02 RFX3 chr16 - 12268638 12268651 2.86e-05 0.768 GTCCCATAACAACG
M6453_1.02 RFX3 chr1 + 237040944 237040957 2.86e-05 0.768 TCGTCATGGCTACA
M6453_1.02 RFX3 chr1 + 226782491 226782504 2.87e-05 0.768 tcaccatgacaaac
M6453_1.02 RFX3 chr13 - 94280801 94280814 2.9e-05 0.768 ATTCCATGGCACCC
M6453_1.02 RFX3 chr2 + 72841524 72841537 2.93e-05 0.768 TCTCCATGGTATCC
M6453_1.02 RFX3 chr1 - 195113643 195113656 2.93e-05 0.768 TCTCCATGGTACCC
M6453_1.02 RFX3 chr1 + 230707872 230707885 2.93e-05 0.768 GTGTCATGGAAACC
M6453_1.02 RFX3 chr11 + 22337628 22337641 2.94e-05 0.768 TTTCCATAGCATCC
M6453_1.02 RFX3 chr18 - 36481688 36481701 3.1e-05 0.801 TTCCCATGGTAATA
M6453_1.02 RFX3 chr8 - 10991536 10991549 3.37e-05 0.856 GACCTATGGCAACC
M6453_1.02 RFX3 chr2 + 178962454 178962467 3.41e-05 0.856 tcaccatggaaagc
M6453_1.02 RFX3 chr3 + 105869438 105869451 3.43e-05 0.856 GTTTCATAGCAACA
M6453_1.02 RFX3 chr17 - 82388506 82388519 3.44e-05 0.856 CCACCATGGTCACA
M6453_1.02 RFX3 chr16 - 31457134 31457147 3.45e-05 0.856 GTTCCATGGCAGCG
M6453_1.02 RFX3 chr1 - 151995178 151995191 3.6e-05 0.884 TTTTCCTGGCAACA
M6453_1.02 RFX3 chr8 - 142383727 142383740 3.66e-05 0.891 TCACCTTGATAACC
M6453_1.02 RFX3 chr19 - 28396521 28396534 3.73e-05 0.901 TTGCCATGGAAAGG
M6453_1.02 RFX3 chr8 + 21601725 21601738 3.77e-05 0.903 TTTCCAAGGTAACT
M6453_1.02 RFX3 chr10 - 70950500 70950513 3.86e-05 0.903 GAACCATGGCAAGG
M6453_1.02 RFX3 chr1 - 146039500 146039513 3.86e-05 0.903 TTTCCATGGTAGCT
M6453_1.02 RFX3 chr1 + 100894959 100894972 3.88e-05 0.903 TCTCCAAGGTAACA
M6453_1.02 RFX3 chr3 - 44136844 44136857 3.89e-05 0.903 CACCCATGGAAACC
M6453_1.02 RFX3 chr16 + 12268822 12268835 3.96e-05 0.91 TCTCCATGGTATCA
M6453_1.02 RFX3 chr1 - 34709836 34709849 3.99e-05 0.912 CTTCCATGGCAATA
M6453_1.02 RFX3 chr10 - 97960453 97960466 4.05e-05 0.918 CCATCATGGAAACA
M6453_1.02 RFX3 chr21 - 42429883 42429896 4.14e-05 0.926 TCACCATGCAAACA
M6453_1.02 RFX3 chr12 + 96901221 96901234 4.17e-05 0.926 CAACAATGGCAACA
M6453_1.02 RFX3 chr16 - 7182518 7182531 4.25e-05 0.926 TTTCTATAACAACA
M6453_1.02 RFX3 chr3 - 160831087 160831100 4.25e-05 0.926 TCTCCCTAGCAACT
M6453_1.02 RFX3 chr2 + 202377504 202377517 4.25e-05 0.926 GTGCCCTGGCTACC
M6453_1.02 RFX3 chrX - 72210294 72210307 4.3e-05 0.931 TTTCCCTGACAACT
M6453_1.02 RFX3 chr11 + 64977981 64977994 4.56e-05 0.977 TTTCCAAAGTAACC
M6453_1.02 RFX3 chr1 + 47808973 47808986 4.58e-05 0.977 TTGCTAAGGTAACC
M6453_1.02 RFX3 chr10 + 93702892 93702905 4.65e-05 0.982 TAACCTTAGTAACG
M6453_1.02 RFX3 chr22 + 25193564 25193577 4.69e-05 0.982 TCTCCCTGGCTACC
M6453_1.02 RFX3 chr1 - 20324688 20324701 4.71e-05 0.982 CTGCCCTGGAAACA
M6453_1.02 RFX3 chr1 + 231242930 231242943 4.74e-05 0.983 CTTCCACGGTAACC
M6453_1.02 RFX3 chr8 + 141715983 141715996 4.96e-05 1 GCTCCATAGAAACA
M6453_1.02 RFX3 chr17 + 42180082 42180095 4.98e-05 1 GCGCTATGGAAACA
M6453_1.02 RFX3 chr19 + 14795268 14795281 5e-05 1 GCACCATtgtaact
M6453_1.02 RFX3 chr6 - 79841792 79841805 5.11e-05 1 CTGCCATAGCAAGG
M6453_1.02 RFX3 chr16 + 21820868 21820881 5.22e-05 1 TCCTCATGGAAACG
M6453_1.02 RFX3 chr17 + 35359556 35359569 5.27e-05 1 CTATCATGGGAACA
M6453_1.02 RFX3 chr16 - 23974628 23974641 5.29e-05 1 TTTCCATGACATCC
M6453_1.02 RFX3 chr20 - 5510650 5510663 5.42e-05 1 GTACCATGGACACC
M6453_1.02 RFX3 chr1 + 11194579 11194592 5.49e-05 1 GTATCATAACAACA
M6453_1.02 RFX3 chr4 + 15001282 15001295 5.61e-05 1 CTACCATGGAAAGC
M6453_1.02 RFX3 chr7 - 30970971 30970984 5.61e-05 1 GTACCATGGAAAGC
M6453_1.02 RFX3 chr19 - 57667503 57667516 5.67e-05 1 TTTCCATCACAACA
M6453_1.02 RFX3 chr11 - 93198315 93198328 5.74e-05 1 TAACTATAGAAACA
M6453_1.02 RFX3 chr7 + 65832206 65832219 5.76e-05 1 caaccttggtaaca
M6453_1.02 RFX3 chr12 - 8829739 8829752 5.82e-05 1 TATCCATGGTGACA
M6453_1.02 RFX3 chr18 + 77144736 77144749 5.87e-05 1 GCATCCTGGCAACA
M6453_1.02 RFX3 chr2 + 240840486 240840499 5.87e-05 1 GCATCCTGGCAACA
M6453_1.02 RFX3 chr22 + 19201977 19201990 5.89e-05 1 ctgccatagccaca
M6453_1.02 RFX3 chr14 + 63413281 63413294 5.91e-05 1 ATTCCATGTCAACT
M6453_1.02 RFX3 chr10 + 122879167 122879180 5.93e-05 1 TAGTCCTGGCAACG
M6453_1.02 RFX3 chr11 - 125903517 125903530 5.98e-05 1 TCTCAATGGTAACT
M6453_1.02 RFX3 chr10 + 58336230 58336243 6.03e-05 1 TCACACTGGCAACA
M6453_1.02 RFX3 chr13 + 97753349 97753362 6.05e-05 1 ttgccttgggaacc
M6453_1.02 RFX3 chr6 + 114432392 114432405 6.07e-05 1 TGACAATGGCAACA
M6453_1.02 RFX3 chr16 + 19307985 19307998 6.19e-05 1 CTTCCATGTCAACT
M6453_1.02 RFX3 chr20 + 5510835 5510848 6.23e-05 1 cagccttggcaaca
M6453_1.02 RFX3 chr19 + 40567084 40567097 6.23e-05 1 cagccttggcaaca
M6453_1.02 RFX3 chr19 - 11528445 11528458 6.23e-05 1 CAGCCTTGGCAACA
M6453_1.02 RFX3 chr3 - 13142001 13142014 6.23e-05 1 CTTCTATGGCTACA
M6453_1.02 RFX3 chr21 - 31586529 31586542 6.29e-05 1 TTTCCATAGTATCA
M6453_1.02 RFX3 chr14 - 89906115 89906128 6.32e-05 1 TCCTCATGATAACC
M6453_1.02 RFX3 chr10 + 58176399 58176412 6.33e-05 1 ttctcataacaacc
M6453_1.02 RFX3 chr22 - 37561665 37561678 6.33e-05 1 CTGTCATGGTTACG
M6453_1.02 RFX3 chr7 - 141451278 141451291 6.33e-05 1 TTCTCATAACAACC
M6453_1.02 RFX3 chr14 + 24513085 24513098 6.35e-05 1 TGTCCATGGCTACA
M6453_1.02 RFX3 chr7 - 134059181 134059194 6.35e-05 1 CGCCCATGGCAACT
M6453_1.02 RFX3 chr12 + 96901274 96901287 6.37e-05 1 TTACCATAACAGCA
M6453_1.02 RFX3 chr19 - 55066101 55066114 6.37e-05 1 TAACCATATTAACA
M6453_1.02 RFX3 chr12 - 49104854 49104867 6.4e-05 1 TTACCCTGGCAATT
M6453_1.02 RFX3 chr17 - 47652746 47652759 6.43e-05 1 CAACTCTGGCAACC
M6453_1.02 RFX3 chr17 + 45777741 45777754 6.47e-05 1 cagctatgacaacc
M6453_1.02 RFX3 chr4 + 20474301 20474314 6.5e-05 1 GTACTATGGGAACT
M6453_1.02 RFX3 chr10 - 127557315 127557328 6.52e-05 1 TAACCATCACAACA
M6453_1.02 RFX3 chr1 + 166069388 166069401 6.54e-05 1 TAATCATGGGAACA
M6453_1.02 RFX3 chr17 - 38667380 38667393 6.54e-05 1 TTATCATAGCAAGC
M6453_1.02 RFX3 chr11 + 18111022 18111035 6.56e-05 1 CTGCCATATTAACC
M6453_1.02 RFX3 chr13 - 86193450 86193463 6.58e-05 1 TCACCCTGGCAATA
M6453_1.02 RFX3 chr15 - 101811327 101811340 6.63e-05 1 TTTCCAAAGCAACT
M6453_1.02 RFX3 chr20 + 44777096 44777109 6.69e-05 1 ATTCCATGGCACCT
M6453_1.02 RFX3 chr6 - 78530588 78530601 6.69e-05 1 TTTCCATTATAACC
M6453_1.02 RFX3 chr17 + 38560930 38560943 6.72e-05 1 CTGCCCTGGTTACC
M6453_1.02 RFX3 chr8 + 27459626 27459639 6.75e-05 1 CCTCCATGGCCACA
M6453_1.02 RFX3 chr8 - 61288202 61288215 6.77e-05 1 CAGCCATGGCATCG
M6453_1.02 RFX3 chr21 + 32505881 32505894 6.9e-05 1 agtccatagcaaca
M6453_1.02 RFX3 chr12 - 118982003 118982016 7.01e-05 1 TTACCTTGGCAGCG
M6453_1.02 RFX3 chr3 + 10964982 10964995 7.06e-05 1 gtaacatggaaaca
M6453_1.02 RFX3 chr1 - 230707870 230707883 7.06e-05 1 TTTCCATGACACCA
M6453_1.02 RFX3 chr3 + 126023687 126023700 7.09e-05 1 TTTCCGTGGCTACC
M6453_1.02 RFX3 chr17 - 79420583 79420596 7.14e-05 1 GTGCCATGGAGACC
M6453_1.02 RFX3 chr19 + 31397520 31397533 7.19e-05 1 CCTCCATGGCACCA
M6453_1.02 RFX3 chr3 + 99562089 99562102 7.19e-05 1 CTTCCATGATTACC
M6453_1.02 RFX3 chr16 + 52515056 52515069 7.21e-05 1 gtcccatgaaaaca
M6453_1.02 RFX3 chrX + 12721424 12721437 7.24e-05 1 TCGTCAGGGCAACC
M6453_1.02 RFX3 chr5 + 169641651 169641664 7.34e-05 1 CAACCCTGGAAACC
M6453_1.02 RFX3 chr2 - 234335694 234335707 7.36e-05 1 TTGCCGTGGGAACC
M6453_1.02 RFX3 chr8 + 40829104 40829117 7.42e-05 1 TCCCCCTGGAAACA
M6453_1.02 RFX3 chr22 + 17058173 17058186 7.45e-05 1 tttccatggctgcc
M6453_1.02 RFX3 chr5 + 125137726 125137739 7.45e-05 1 TGTCCATGGTTACC
M6453_1.02 RFX3 chr17 - 36777512 36777525 7.55e-05 1 TCTCCCTGACAACT
M6453_1.02 RFX3 chr15 - 23437723 23437736 7.57e-05 1 TTACCATTTCAACA
M6453_1.02 RFX3 chr17 - 40906917 40906930 7.57e-05 1 ACACCATAAAAACA
M6453_1.02 RFX3 chr10 + 131898675 131898688 7.61e-05 1 attccatagccacc
M6453_1.02 RFX3 chr17 + 76910165 76910178 7.74e-05 1 TCACCCTGGTGACA
M6453_1.02 RFX3 chr9 - 34494152 34494165 7.74e-05 1 CAGCCATGGGAACT
M6453_1.02 RFX3 chr20 - 61608266 61608279 7.87e-05 1 TTTCCCTGCCAACC
M6453_1.02 RFX3 chr11 + 66418851 66418864 7.98e-05 1 CTTCCATGGTGACT
M6453_1.02 RFX3 chr4 - 89540329 89540342 7.98e-05 1 TCACCAGGGAAACT
M6453_1.02 RFX3 chr10 - 89251532 89251545 8.01e-05 1 CAACCAGGGCAACT
M6453_1.02 RFX3 chr7 + 129218960 129218973 8.08e-05 1 TTGCCCTGAAAACA
M6453_1.02 RFX3 chr16 + 47787871 47787884 8.11e-05 1 tggtCATAGCAACG
M6453_1.02 RFX3 chr17 - 2975443 2975456 8.13e-05 1 TTGCTATACCAACG
M6453_1.02 RFX3 chr10 + 126508843 126508856 8.19e-05 1 ACACCATGACACCC
M6453_1.02 RFX3 chr17 + 2054349 2054362 8.22e-05 1 GCCCCATGGTTACT
M6453_1.02 RFX3 chr2 + 234335659 234335672 8.25e-05 1 TTTCCATGGAAGCA
M6453_1.02 RFX3 chr14 + 88978006 88978019 8.32e-05 1 CCCCCATGGCAATG
M6453_1.02 RFX3 chr6 - 19988780 19988793 8.38e-05 1 TTACCATAATAGCG
M6453_1.02 RFX3 chr16 + 30526386 30526399 8.41e-05 1 GCCCCACGGCAACG
M6453_1.02 RFX3 chr1 - 29752409 29752422 8.41e-05 1 ATCCGATGGCAACT
M6453_1.02 RFX3 chr5 - 136365435 136365448 8.41e-05 1 TTACCACTGCAACA
M6453_1.02 RFX3 chr12 + 15435695 15435708 8.5e-05 1 GGTCCATAGTAACC
M6453_1.02 RFX3 chr4 + 128333437 128333450 8.53e-05 1 gtaccatgaaTACC
M6453_1.02 RFX3 chr7 + 129434516 129434529 8.62e-05 1 tggcaatggcaacg
M6453_1.02 RFX3 chr10 - 77680087 77680100 8.78e-05 1 CACCCATGGGAACC
M6453_1.02 RFX3 chr1 - 29737034 29737047 8.83e-05 1 CTCTTATGGCAACA
M6453_1.02 RFX3 chr14 - 105801445 105801458 8.83e-05 1 CCACCTTGACAACA
M6453_1.02 RFX3 chr9 + 135972355 135972368 8.93e-05 1 ttaccattttaacc
M6453_1.02 RFX3 chr9 - 23829545 23829558 8.93e-05 1 CCACCATACTAACA
M6453_1.02 RFX3 chr20 - 63116694 63116707 8.95e-05 1 CTATCATGGCAATA
M6453_1.02 RFX3 chr19 - 12832601 12832614 9.01e-05 1 TCACGATGGCGACC
M6453_1.02 RFX3 chr1 - 154703230 154703243 9.03e-05 1 TCGCAATAGTAACT
M6453_1.02 RFX3 chr19 + 29329888 29329901 9.09e-05 1 taaccattgctaca
M6453_1.02 RFX3 chr14 + 57865748 57865761 9.09e-05 1 TAGCCATAGTAGCC
M6453_1.02 RFX3 chr6 + 159267451 159267464 9.12e-05 1 CTTTCATAGTAACT
M6453_1.02 RFX3 chr2 + 94759573 94759586 9.16e-05 1 ACACCAGGACAACG
M6453_1.02 RFX3 chr18 + 77361024 77361037 9.19e-05 1 tctccatgacatcc
M6453_1.02 RFX3 chr4 - 94603510 94603523 9.19e-05 1 TTCTCTTGGCAACG
M6453_1.02 RFX3 chr1 - 203220344 203220357 9.22e-05 1 CAATCATGATAACG
M6453_1.02 RFX3 chr12 + 71440075 71440088 9.39e-05 1 GCACCATGGACACC
M6453_1.02 RFX3 chr10 + 131354679 131354692 9.39e-05 1 TTTTCATTGTAACC
M6453_1.02 RFX3 chr12 - 108004663 108004676 9.49e-05 1 GCTCCCTGACAACC
M6453_1.02 RFX3 chr2 + 188292406 188292419 9.52e-05 1 CTGCTATGGCAGCG
M6453_1.02 RFX3 chr10 + 8157346 8157359 9.55e-05 1 TTTCCATCACAACT
M6453_1.02 RFX3 chr7 + 132135353 132135366 9.55e-05 1 ttcccatggaaagg
M6453_1.02 RFX3 chr12 - 110267253 110267266 9.55e-05 1 TTTCCATTACAACT
M6453_1.02 RFX3 chr1 - 110747029 110747042 9.55e-05 1 CATCCATGTCAACC
M6453_1.02 RFX3 chr11 + 30228813 30228826 9.59e-05 1 tcaccatacaaacg
M6453_1.02 RFX3 chr19 - 33348721 33348734 9.59e-05 1 CTCCCATGGCAAAT
M6453_1.02 RFX3 chr19 - 37172740 37172753 9.63e-05 1 GCGCCATATCAACA
M6453_1.02 RFX3 chr1 - 54804022 54804035 9.66e-05 1 TTGCCCTGGTCACA
M6453_1.02 RFX3 chr3 - 159273856 159273869 9.66e-05 1 TTGCCCTGGTCACA
M6453_1.02 RFX3 chr10 + 78727389 78727402 9.71e-05 1 GCACCATGGAGACA
M6453_1.02 RFX3 chr2 - 31107815 31107828 9.71e-05 1 GCACCATGGAAAGC
M6453_1.02 RFX3 chr3 + 54188182 54188195 9.74e-05 1 TTTCTATTGCAACT
M6453_1.02 RFX3 chr1 - 210739587 210739600 9.77e-05 1 TTTCAATGATAACA
M6453_1.02 RFX3 chr13 - 91058157 91058170 9.81e-05 1 GCCCCATGGGAACT
M6453_1.02 RFX3 chr7 - 129218958 129218971 9.9e-05 1 TTTTCAGGGCAACA
M6453_1.02 RFX3 chr22 + 26852316 26852329 9.97e-05 1 TTGCCCTGGTAATA
M6453_1.02 RFX3 chr18 + 36481690 36481703 9.97e-05 1 TTACCATGGGAATT
M6453_1.02 RFX3 chr6 + 138525336 138525349 9.97e-05 1 gcaacatagcaact
M6453_1.02 RFX3 chr10 + 86203827 86203840 0.0001 1 gcaccatggaagcc

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_25 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif M6453_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_25 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REST.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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