# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:14 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:15 PST 2017) # host: kadru # when: Mon Dec 18 16:14:14 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.213 C 0.287 G 0.285 T 0.215 MOTIF AATAATAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AATAATAA TTATTATT 56 5 9.2e-013 2.9e-008 # AATAATAA TTATTATT 56 5 9.2e-013 2.9e-008 letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 2.9e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCWCTGC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCWCTGC GCAGWGG 73 21 9.9e-009 3.1e-004 # CCACTGC GCAGTGG 33 6 5.3e-006 1.7e-001 # CCTCTGC GCAGAGG 43 15 1.1e-004 3.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 76 E= 3.1e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.434211 0.000000 0.000000 0.565789 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCKCCKCC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CCKCCKCC GGMGGMGG 73 23 5.0e-008 1.6e-003 # CCGCCGCC GGCGGCGG 25 6 3.8e-004 1.2e+001 # CCTCCTCC GGAGGAGG 23 6 1.0e-003 3.3e+001 # CCGCCTCC GGAGGCGG 22 6 1.7e-003 5.3e+001 # CCTCCGCC GGCGGAGG 19 5 3.0e-003 9.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 1.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.539326 0.460674 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.494382 0.505618 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGTCYC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CTGTCYC GRGACAG 47 9 6.9e-008 2.2e-003 # CTGTCTC GAGACAG 27 4 1.4e-005 4.3e-001 # CTGTCCC GGGACAG 22 6 1.7e-003 5.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 49 E= 2.2e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.448980 0.000000 0.551020 0.000000 1.000000 0.000000 0.000000 MOTIF CCGGAAS DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCGGAAS STTCCGG 51 12 1.9e-007 6.1e-003 # CCGGAAC GTTCCGG 32 6 9.2e-006 2.9e-001 # CCGGAAG CTTCCGG 24 6 6.3e-004 2.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 59 E= 6.1e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.525424 0.474576 0.000000 MOTIF CAGCCTS DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAGCCTS SAGGCTG 70 25 8.6e-007 2.7e-002 # CAGCCTG CAGGCTG 39 11 3.2e-005 1.0e+000 # CAGCCTC GAGGCTG 36 14 1.1e-003 3.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 77 E= 2.7e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.493506 0.506494 0.000000 MOTIF AGAYGGA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGAYGGA TCCRTCT 29 3 9.7e-007 3.0e-002 # AGATGGA TCCATCT 14 0 5.7e-005 1.8e+000 # AGACGGA TCCGTCT 15 3 3.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 29 E= 3.0e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.517241 0.000000 0.482759 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 42.19 seconds