******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:4253961-4254461 1.0000 100 chr19:10332927-10333427 1.0000 100 chr6:32971004-32971504 1.0000 100 chr19:34501532-34502032 1.0000 100 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chr19:39341652-39342152 1.0000 100 chr20:33401339-33401839 1.0000 100 chr15:101724042-10172454 1.0000 100 chr5:149755386-149755886 1.0000 100 chr11:62841286-62841786 1.0000 100 chr1:206612156-206612656 1.0000 100 chr1:225998873-225999373 1.0000 100 chr3:183107272-183107772 1.0000 100 chr7:129054701-129055201 1.0000 100 chr19:43575749-43576249 1.0000 100 chr11:59557580-59558080 1.0000 100 chr12:109477334-10947783 1.0000 100 chr14:54818832-54819332 1.0000 100 chr19:58327005-58327505 1.0000 100 chr5:139341763-139342263 1.0000 100 chr20:58650922-58651422 1.0000 100 chr14:35826311-35826811 1.0000 100 chr22:20495983-20496483 1.0000 100 chr10:72354566-72355066 1.0000 100 chr20:24992264-24992764 1.0000 100 chr15:68277402-68277902 1.0000 100 chr19:44259443-44259943 1.0000 100 chr10:13298621-13299121 1.0000 100 chr19:36837855-36838355 1.0000 100 chr5:148825829-148826329 1.0000 100 chr17:32341936-32342436 1.0000 100 chr1:36255917-36256417 1.0000 100 chr1:109484058-109484558 1.0000 100 chr16:3183985-3184485 1.0000 100 chr17:59209678-59210178 1.0000 100 chr19:41376159-41376659 1.0000 100 chr14:22982638-22983138 1.0000 100 chr6:3231621-3232121 1.0000 100 chr22:32472788-32473288 1.0000 100 chr5:181218520-181219020 1.0000 100 chr1:93078872-93079372 1.0000 100 chr16:30874977-30875477 1.0000 100 chr10:117541472-11754197 1.0000 100 chr6:79078056-79078556 1.0000 100 chr20:52972214-52972714 1.0000 100 chr17:45148393-45148893 1.0000 100 chr19:37594249-37594749 1.0000 100 chrX:73944035-73944535 1.0000 100 chr19:1383510-1384010 1.0000 100 chr21:39313556-39314056 1.0000 100 chr1:44213164-44213664 1.0000 100 chr12:54188168-54188668 1.0000 100 chr19:39411901-39412401 1.0000 100 chr19:17337039-17337539 1.0000 100 chr11:47578724-47579224 1.0000 100 chrUn_KI270467v1:3122-36 1.0000 100 chr19:35947339-35947839 1.0000 100 chr12:12266976-12267476 1.0000 100 chrUn_KI270467v1:2070-25 1.0000 100 chr19:36916386-36916886 1.0000 100 chr10:93702413-93702913 1.0000 100 chr1:235688752-235689252 1.0000 100 chr6:131628047-131628547 1.0000 100 chr7:102572306-102572806 1.0000 100 chr19:37655818-37656318 1.0000 100 chr5:150459727-150460227 1.0000 100 chr19:40556267-40556767 1.0000 100 chr1_KI270713v1_random:2 1.0000 100 chr6:24774894-24775394 1.0000 100 chr19:37371123-37371623 1.0000 100 chr12:8949986-8950486 1.0000 100 chr19:44207464-44207964 1.0000 100 chr1:241357387-241357887 1.0000 100 chr12:117189352-11718985 1.0000 100 chr1:183471815-183472315 1.0000 100 chr19:35643410-35643910 1.0000 100 chr12:47080555-47081055 1.0000 100 chr19:41310147-41310647 1.0000 100 chrUn_KI270466v1:187-687 1.0000 100 chr1:37989799-37990299 1.0000 100 chr19:36488967-36489467 1.0000 100 chr15:65610888-65611388 1.0000 100 chr19:44164465-44164965 1.0000 100 chr1:63523036-63523536 1.0000 100 chr2:235741461-235741961 1.0000 100 chr10:23411313-23411813 1.0000 100 chr6:41318730-41319230 1.0000 100 chr1:155244209-155244709 1.0000 100 chr8:28514878-28515378 1.0000 100 chrUn_KI270467v1:2907-34 1.0000 100 chr12:1085293-1085793 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.214 C 0.286 G 0.286 T 0.214 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/REPIN1.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.208 C 0.292 G 0.292 T 0.208 ******************************************************************************** ******************************************************************************** MOTIF TATTATTATTDTTWTT MEME-1 width = 16 sites = 111 llr = 1691 E-value = 2.2e-317 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTATTATTDTTWTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 161:51:7:14::51: pos.-specific C ::2:::::1:::1:1: probability G :2::2112::31:2:: matrix T 918a39919849938a bits 2.3 * 2.0 * * * 1.8 * * * * * * 1.6 * * ** * ** * Relative 1.4 * ** ** ** ** * Entropy 1.1 * ** ** ** ** ** (22.0 bits) 0.9 **** ***** ** ** 0.7 ************* ** 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel TATTATTATTATTATT consensus G T T T sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTATTATTDTTWTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr10:23411313-23411813 - 51 2.45e-11 CCAGAAATAT TATTATTATTATTATT ATTGTTGTTG chr1:241357387-241357887 + 83 2.45e-11 GCAGATGATt tattattattattatt at chr1:235688752-235689252 - 36 2.45e-11 TTATTATTAT TATTATTATTATTATT ATTTGAGACG chr1:36255917-36256417 + 74 2.45e-11 CTGCCTGGat tattattattattatt attgttatta chr3:183107272-183107772 + 39 2.45e-11 gttttgtttt tattattattattatt attattattt chr5:149755386-149755886 + 13 2.45e-11 TTGTTGTTGt tattattattattatt gttattatta chr1:44487450-44487950 - 26 2.45e-11 TTATTATTAT TATTATTATTATTATT ATTTTAGTAG chr19:43682205-43682705 - 24 2.45e-11 TTATTATTAT TATTATTATTATTATT ATTTTGAGAC chr19:34478445-34478945 + 3 2.45e-11 at tattattattattatt attCTGgagg chr3:14764280-14764780 + 2 2.45e-11 t tattattattattatt attattatta chr19:50356775-50357275 - 5 2.45e-11 GGATCTTTAC TATTATTATTATTATT ATTT chr6:7250761-7251261 + 7 2.45e-11 GGtttt tattattattattatt attattacag chr2:61136737-61137237 - 58 2.45e-11 GCCTCATTAT TATTATTATTATTATT ATCGTTGTTG chr19:38954718-38955218 + 3 2.45e-11 at tattattattattatt attattattt chr22:29602720-29603220 - 46 2.45e-11 TTATTATTGT TATTATTATTATTATT AATTATTATT chr17:48595521-48596021 + 68 2.45e-11 ttgttgttgt tattattattattatt atcatcatca chr8:65731762-65732262 + 5 2.45e-11 tcta tattattattattatt attattgttg chr19:13727312-13727812 - 45 2.45e-11 TTATTATTAT TATTATTATTATTATT ATTGTTATTA chr6:27603518-27604018 + 76 2.45e-11 gcgcccggcc tattattattattatt attattgtt chr1:19642506-19643006 - 30 2.45e-11 TTGTTGTTGT TATTATTATTATTATT AGAGACAGAA chr8:37538045-37538545 - 52 2.45e-11 CCAGGATTGT TATTATTATTATTATT TGGTTTGTTT chr16:40589-41089 - 76 2.45e-11 ATTATTATT TATTATTATTATTATT TTTGAGATGG chr17:18363685-18364185 + 56 4.91e-11 GCAGACACTT TATTATTATTATTTTT GTTAtttttt chr1:155244209-155244709 - 2 9.09e-11 TCACCATTAT TATTATTATTGTTATT A chr2:235741461-235741961 + 30 9.09e-11 TTAAGCACTt tattattattgttatt attattattg chr1_KI270713v1_random:2 + 60 9.09e-11 ttatcattat tattattattgttatt attattattg chr19:35881936-35882436 - 19 9.09e-11 ATTTATTTTT TATTTTTATTTTTATT TTTAGACAGG chr12:112942521-11294302 + 78 9.09e-11 ttgttgtttc tattattattgttatt attatta chr12:1085293-1085793 + 52 1.25e-10 CCTGGCCCgt tattattattattgtt gttgttgttg chr6:144482120-144482620 + 75 1.25e-10 AGAGGTATGC tattattattattgtt gttattatta chr21:31582137-31582637 - 14 1.25e-10 CTTGTGCTGT TATTATTATTATTGTT ATTGTTATTA chr16:24970657-24971157 + 12 1.25e-10 ttgttctgct tattattatttttgtt tgtttttttg chr3:187744894-187745394 - 24 1.25e-10 GTTATGTATT TATTATTATTATTGTT GTCTTTGAGT chr19:40556267-40556767 + 44 2.36e-10 tattgttact tattgttatttttatt gttactgttt chr14:54818832-54819332 - 76 2.36e-10 TATTATTGA TATTGTTATTATTATT ACCTTGCCAG chr19:3047348-3047848 + 15 2.36e-10 taatacttac tattgttattattatt attactaGCT chr15:73738476-73738976 - 13 2.36e-10 TTTCTTTTTT TATTTTTATTTTTTTT ATTTTTGAGA chr1:226790505-226791005 - 85 2.36e-10 . TATTGTTATTATTATT TTCAGACAGG chr19:16292326-16292826 + 83 2.36e-10 atttatttgt tgttattattattatt at chr12:117189352-11718985 - 49 3.36e-10 TCATTGTCAT TATTATTATTGTTGTT GTTGTTACAA chr19:40508804-40509304 + 57 3.36e-10 gagttttttt TATTATTATTGTTGTT GTTTATTGCT chr20:1469724-1470224 - 2 1.32e-09 GCAGTGGTAG TGTTGTTATTATTATT A chr1:26329828-26330328 - 84 1.32e-09 T TATTATTGTTGTTATT GTTATCATGA chr1:11297705-11298205 + 37 2.98e-09 CTATTACTTT TACTATTAttgttttt tgtttttttg chr17:43574902-43575402 + 14 3.33e-09 atgcaccctt tattattattattgct attgtttaat chr5:174327120-174327620 + 57 5.62e-09 TGTCattatg tgttattactattatt gtcatcataa chr17:7616403-7616903 - 35 5.62e-09 GCCGGGCCAC TATTATTATTATTTGT TGTTGTTGTT chr1:50978972-50979472 - 27 6.34e-09 GGTTGTTTTT TGTTTTTGTTTTTATT TGGTGGTGGG chr19:58278888-58279388 - 62 7.94e-09 CCGCCGTCGT TATTGTTGTTATTGTT ACCTGAAGCC chr16:30408586-30409086 + 24 9.04e-09 ATGGCtcttt tattattactgttgtt attgtttgag chr1:28648566-28649066 + 49 1.16e-08 ATTCTGTGTG TGTTTTTTTTTTTTTT TAGAGGCTGC chr19:41376159-41376659 + 77 1.31e-08 cggtccttgt tgctgttattattatt ggctatta chr12:120533965-12053446 - 47 1.45e-08 TTTGTTTTGG TTTTGTTTTTTTTATT TCCTCCCCCA chr6:27214821-27215321 - 64 1.79e-08 ACCCGCTTTT TGTTTTTGTTTTTGTT TTTTAATGAG chr13:46551297-46551797 + 56 1.79e-08 TACTTTCATt tattattattgtcgtt attattatGA chr17:75368277-75368777 + 48 1.79e-08 gtcaggcGTT TGtttttttttttgtt gttttttttt chr5:150459727-150460227 + 75 2.04e-08 agtgtagatt tattattatcgttgtt gttgttgttg chr6:2634300-2634800 - 41 2.04e-08 CCGTAAGCTC TGTTATTATTATCTTT TGATTTATAA chr19:40719213-40719713 + 79 2.32e-08 atgaggtaga tacttttttttttttt ctgaga chr21:36122987-36123487 - 39 2.84e-08 TGGCTTCATA TTTTTTTATTATTTAT TTATTTATTT chr12:8949986-8950486 + 69 3.92e-08 CCTTGGGGTG AATTATTATTGTTACT GTTATCTCTG chr6:44247016-44247516 + 29 4.36e-08 GCTGTATTCG TGTTGTTTTTGTTTTT TTCTGTCCTT chr22:32472788-32473288 - 81 6.52e-08 TTTT TGTTGTTGTTGTTGTT TGAGATGGAG chr16:3183985-3184485 + 38 6.52e-08 CCCTCtgttt tgttgttgttgttgtt gtttttTGAC chr19:38962006-38962506 - 3 8.80e-08 GCCAAACTCC AATTATTATTTATTTT TT chr12:54051953-54052453 - 7 1.57e-07 CGAAAAGTCG TAATGTGATTTTTTTT CCCTCT chr6:135030492-135030992 - 58 1.71e-07 CACTACTCTT TATTGTTATTTTTCCT CTTTATTATT chr15:71780260-71780760 - 59 1.71e-07 TTTCTTTTGG TGTTTTTGTTTGTTTT TTTAGTTGTA chr1:233293988-233294488 + 79 1.89e-07 gtaaatctgg tactattactttttct catttt chr1:151012476-151012976 + 83 1.89e-07 ttggttacga tattattctcattttt tt chr5:160008628-160009128 - 25 2.27e-07 TTTATTTATT TATTTATTTATTTATT TTTGAGACAG chr19:40567067-40567567 - 33 2.27e-07 TTTATTTATT TATTTATTTATTTATT TTTGAGACAG chr6:42565310-42565810 + 45 2.71e-07 GGGTGTGttt tgttgttgtttgtttt tgtttttgag chr7:114085831-114086331 - 12 3.53e-07 TACTTTGCGT TGTTATTGTCGTTGTT GTTGTTGATA chr14:32134462-32134962 - 54 3.53e-07 TGAGACATTG TGATGATATTTTTATT TCAAACAAGA chr1:232670018-232670518 - 47 4.19e-07 AAGCTGCGAG AGTTGTTACTGTTATT GATGATGGTA chr19:44259443-44259943 + 23 4.54e-07 gcccagctaa tttttgtatttttagt agagacgggg chr19:39033051-39033551 - 57 4.54e-07 GCCCAGCTAA TTTTTGTATTTTTAGT AGAGACGGGG chr1:236089906-236090406 + 85 4.54e-07 gtccggctaa tttttgtatttttagt chr19:38243750-38244250 - 11 4.95e-07 TGTGAATTGG TTTTATTTTATTTTAT TTCTTTGTTT chr1:155193878-155194378 - 64 4.95e-07 ACGCTCGGCT AATTTTTGTAGTTTTT AGTAGAGACG chr12:47080555-47081055 + 3 5.85e-07 CC TTTTTttcttttttct ctcttctcct chr1:146035622-146036122 - 51 1.19e-06 TGGTGAGCGA TTTCTTTATTTGTGTT TTTCTACATT chr19:1442273-1442773 - 48 1.19e-06 CTGTTTATCT TACTTTTGCATTTTTT TTCCAACTTT chr1:67850428-67850928 + 83 1.50e-06 aatacatggt agctcttattattATT TC chr19:44212611-44213111 - 11 1.50e-06 CAGTAACGAC TATCTTTATTGCTATT TTAAAGATGA chr19:36528785-36529285 + 45 1.50e-06 TGAGTCCCTG TGTTAGGACTGTTATT GTGTGACTGT chr1:30488250-30488750 - 6 1.50e-06 TCATTACCAT TACTATTACCATTACT ATTAC chr19:48645976-48646476 + 59 1.88e-06 cCGTGGTGTT ATTTAATTTTGTTGTT GGGCTGGGGG chrUn_KI270467v1:2907-34 + 29 2.02e-06 ataatttggg tactttgatattttat gtacagtatg chrUn_KI270466v1:187-687 + 55 2.02e-06 atattttgtg tactttgatattttat gtacagcata chrUn_KI270467v1:2070-25 + 33 2.02e-06 atattttggg tactttgatattttat gtacagtatg chrUn_KI270467v1:3122-36 + 65 2.02e-06 atattttggg tactttgatattttat ggacagtata chr12:70242753-70243253 - 38 2.18e-06 TTCGTGTTTG TGTTTGTGTTTGTGTT GGACACCCCC chr19:34218154-34218654 + 84 2.18e-06 TGCTGTGGGG TTTTGTGGTTTGTTTT C chr11:62841286-62841786 - 52 2.51e-06 AGCTAAATAG TTATGTTCTTGTTGTT TGAGTTGGAT chr1:51519416-51519916 - 50 2.89e-06 TATAAAGTGC CATTATTATTTTCTAT CATTATCTCA chr5:149449008-149449508 - 3 3.10e-06 TCTGTTAAGG TGACATTATTAATATT AT chr10:45564504-45565004 - 49 3.32e-06 GTCATATTAC TGTTATTGTCGTCGTT GTTGTTGTTT chr17:8226686-8227186 - 79 4.07e-06 GTGGCT TTTTTTTGTGTGTGTT TTGTTTTCTG chr19:35535955-35536455 - 52 4.36e-06 TAAGGGGAGA TAATAGTACTTTTCTT AGAGGGTTGT chr17:8173083-8173583 - 46 5.66e-06 TTTGCAGTCT TGCTATTGCTGTTTGT CTATTTTGCA chr1:61692230-61692730 - 55 6.05e-06 CTCTTTCTCT TTCTTTTTCTTTCTTT CTTTCTCTCT chr5:112160615-112161115 + 73 6.45e-06 GGTGCGAGCT TGCTGTGGTTTTTGCT CTGGGTCCTC chr5:38783078-38783578 + 4 7.32e-06 GGC TATTGTTGCTGGTGCT TCTGCAAGAG chr17:58631420-58631920 - 6 7.79e-06 GTCTGAGTAG TTCTGGGTTTTTTTTT TTTTC chr5:148825829-148826329 + 1 8.82e-06 . TTCTGTGTTTGTTTCT GGCCGCGTTT chr3:4987101-4987601 + 49 1.13e-05 AACCTAGAAG TATCATTAtgggtact attacaattc chr1:146387203-146387703 + 61 1.13e-05 gtggcagggc agatattatggttact gaaatgcctt chr17:7484227-7484727 + 42 1.35e-05 GGAACCCGGT TACTTATTTATTCGTT ACCCTTTTTC chr1:148402448-148402948 + 56 3.08e-05 GAGGGGTGTG AGCTTATACTTatatt tatctggcag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTATTATTDTTWTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:23411313-23411813 2.5e-11 50_[-1]_34 chr1:241357387-241357887 2.5e-11 82_[+1]_2 chr1:235688752-235689252 2.5e-11 35_[-1]_49 chr1:36255917-36256417 2.5e-11 73_[+1]_11 chr3:183107272-183107772 2.5e-11 38_[+1]_46 chr5:149755386-149755886 2.5e-11 12_[+1]_72 chr1:44487450-44487950 2.5e-11 25_[-1]_59 chr19:43682205-43682705 2.5e-11 23_[-1]_61 chr19:34478445-34478945 2.5e-11 2_[+1]_82 chr3:14764280-14764780 2.5e-11 1_[+1]_83 chr19:50356775-50357275 2.5e-11 4_[-1]_80 chr6:7250761-7251261 2.5e-11 6_[+1]_78 chr2:61136737-61137237 2.5e-11 57_[-1]_27 chr19:38954718-38955218 2.5e-11 2_[+1]_82 chr22:29602720-29603220 2.5e-11 45_[-1]_39 chr17:48595521-48596021 2.5e-11 67_[+1]_17 chr8:65731762-65732262 2.5e-11 4_[+1]_80 chr19:13727312-13727812 2.5e-11 44_[-1]_40 chr6:27603518-27604018 2.5e-11 75_[+1]_9 chr1:19642506-19643006 2.5e-11 29_[-1]_55 chr8:37538045-37538545 2.5e-11 51_[-1]_33 chr16:40589-41089 2.5e-11 75_[-1]_9 chr17:18363685-18364185 4.9e-11 55_[+1]_29 chr1:155244209-155244709 9.1e-11 1_[-1]_83 chr2:235741461-235741961 9.1e-11 29_[+1]_55 chr1_KI270713v1_random:2 9.1e-11 59_[+1]_25 chr19:35881936-35882436 9.1e-11 18_[-1]_66 chr12:112942521-11294302 9.1e-11 77_[+1]_7 chr12:1085293-1085793 1.3e-10 51_[+1]_33 chr6:144482120-144482620 1.3e-10 74_[+1]_10 chr21:31582137-31582637 1.3e-10 13_[-1]_71 chr16:24970657-24971157 1.3e-10 11_[+1]_73 chr3:187744894-187745394 1.3e-10 23_[-1]_61 chr19:40556267-40556767 2.4e-10 43_[+1]_41 chr14:54818832-54819332 2.4e-10 75_[-1]_9 chr19:3047348-3047848 2.4e-10 14_[+1]_70 chr15:73738476-73738976 2.4e-10 12_[-1]_72 chr1:226790505-226791005 2.4e-10 84_[-1] chr19:16292326-16292826 2.4e-10 82_[+1]_2 chr12:117189352-11718985 3.4e-10 48_[-1]_36 chr19:40508804-40509304 3.4e-10 56_[+1]_28 chr20:1469724-1470224 1.3e-09 1_[-1]_83 chr1:26329828-26330328 1.3e-09 83_[-1]_1 chr1:11297705-11298205 3e-09 36_[+1]_48 chr17:43574902-43575402 3.3e-09 13_[+1]_71 chr5:174327120-174327620 5.6e-09 56_[+1]_28 chr17:7616403-7616903 5.6e-09 34_[-1]_50 chr1:50978972-50979472 6.3e-09 26_[-1]_58 chr19:58278888-58279388 7.9e-09 61_[-1]_23 chr16:30408586-30409086 9e-09 23_[+1]_61 chr1:28648566-28649066 1.2e-08 48_[+1]_36 chr19:41376159-41376659 1.3e-08 76_[+1]_8 chr12:120533965-12053446 1.4e-08 46_[-1]_38 chr6:27214821-27215321 1.8e-08 63_[-1]_21 chr13:46551297-46551797 1.8e-08 55_[+1]_29 chr17:75368277-75368777 1.8e-08 47_[+1]_37 chr5:150459727-150460227 2e-08 74_[+1]_10 chr6:2634300-2634800 2e-08 40_[-1]_44 chr19:40719213-40719713 2.3e-08 78_[+1]_6 chr21:36122987-36123487 2.8e-08 38_[-1]_46 chr12:8949986-8950486 3.9e-08 68_[+1]_16 chr6:44247016-44247516 4.4e-08 28_[+1]_56 chr22:32472788-32473288 6.5e-08 80_[-1]_4 chr16:3183985-3184485 6.5e-08 37_[+1]_47 chr19:38962006-38962506 8.8e-08 2_[-1]_82 chr12:54051953-54052453 1.6e-07 6_[-1]_78 chr6:135030492-135030992 1.7e-07 57_[-1]_27 chr15:71780260-71780760 1.7e-07 58_[-1]_26 chr1:233293988-233294488 1.9e-07 78_[+1]_6 chr1:151012476-151012976 1.9e-07 82_[+1]_2 chr5:160008628-160009128 2.3e-07 24_[-1]_60 chr19:40567067-40567567 2.3e-07 32_[-1]_52 chr6:42565310-42565810 2.7e-07 44_[+1]_40 chr7:114085831-114086331 3.5e-07 11_[-1]_73 chr14:32134462-32134962 3.5e-07 53_[-1]_31 chr1:232670018-232670518 4.2e-07 46_[-1]_38 chr19:44259443-44259943 4.5e-07 22_[+1]_62 chr19:39033051-39033551 4.5e-07 56_[-1]_28 chr1:236089906-236090406 4.5e-07 84_[+1] chr19:38243750-38244250 5e-07 10_[-1]_74 chr1:155193878-155194378 5e-07 63_[-1]_21 chr12:47080555-47081055 5.9e-07 2_[+1]_82 chr1:146035622-146036122 1.2e-06 50_[-1]_34 chr19:1442273-1442773 1.2e-06 47_[-1]_37 chr1:67850428-67850928 1.5e-06 82_[+1]_2 chr19:44212611-44213111 1.5e-06 10_[-1]_74 chr19:36528785-36529285 1.5e-06 44_[+1]_40 chr1:30488250-30488750 1.5e-06 5_[-1]_79 chr19:48645976-48646476 1.9e-06 58_[+1]_26 chrUn_KI270467v1:2907-34 2e-06 28_[+1]_56 chrUn_KI270466v1:187-687 2e-06 54_[+1]_30 chrUn_KI270467v1:2070-25 2e-06 32_[+1]_52 chrUn_KI270467v1:3122-36 2e-06 64_[+1]_20 chr12:70242753-70243253 2.2e-06 37_[-1]_47 chr19:34218154-34218654 2.2e-06 83_[+1]_1 chr11:62841286-62841786 2.5e-06 51_[-1]_33 chr1:51519416-51519916 2.9e-06 49_[-1]_35 chr5:149449008-149449508 3.1e-06 2_[-1]_82 chr10:45564504-45565004 3.3e-06 48_[-1]_36 chr17:8226686-8227186 4.1e-06 78_[-1]_6 chr19:35535955-35536455 4.4e-06 51_[-1]_33 chr17:8173083-8173583 5.7e-06 45_[-1]_39 chr1:61692230-61692730 6e-06 54_[-1]_30 chr5:112160615-112161115 6.4e-06 72_[+1]_12 chr5:38783078-38783578 7.3e-06 3_[+1]_81 chr17:58631420-58631920 7.8e-06 5_[-1]_79 chr5:148825829-148826329 8.8e-06 [+1]_84 chr3:4987101-4987601 1.1e-05 48_[+1]_36 chr1:146387203-146387703 1.1e-05 60_[+1]_24 chr17:7484227-7484727 1.3e-05 41_[+1]_43 chr1:148402448-148402948 3.1e-05 55_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTATTATTDTTWTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTATTATTDTTWTT width=16 seqs=111 chr10:23411313-23411813 ( 51) TATTATTATTATTATT 1 chr1:241357387-241357887 ( 83) TATTATTATTATTATT 1 chr1:235688752-235689252 ( 36) TATTATTATTATTATT 1 chr1:36255917-36256417 ( 74) TATTATTATTATTATT 1 chr3:183107272-183107772 ( 39) TATTATTATTATTATT 1 chr5:149755386-149755886 ( 13) TATTATTATTATTATT 1 chr1:44487450-44487950 ( 26) TATTATTATTATTATT 1 chr19:43682205-43682705 ( 24) TATTATTATTATTATT 1 chr19:34478445-34478945 ( 3) TATTATTATTATTATT 1 chr3:14764280-14764780 ( 2) TATTATTATTATTATT 1 chr19:50356775-50357275 ( 5) TATTATTATTATTATT 1 chr6:7250761-7251261 ( 7) TATTATTATTATTATT 1 chr2:61136737-61137237 ( 58) TATTATTATTATTATT 1 chr19:38954718-38955218 ( 3) TATTATTATTATTATT 1 chr22:29602720-29603220 ( 46) TATTATTATTATTATT 1 chr17:48595521-48596021 ( 68) TATTATTATTATTATT 1 chr8:65731762-65732262 ( 5) TATTATTATTATTATT 1 chr19:13727312-13727812 ( 45) TATTATTATTATTATT 1 chr6:27603518-27604018 ( 76) TATTATTATTATTATT 1 chr1:19642506-19643006 ( 30) TATTATTATTATTATT 1 chr8:37538045-37538545 ( 52) TATTATTATTATTATT 1 chr16:40589-41089 ( 76) TATTATTATTATTATT 1 chr17:18363685-18364185 ( 56) TATTATTATTATTTTT 1 chr1:155244209-155244709 ( 2) TATTATTATTGTTATT 1 chr2:235741461-235741961 ( 30) TATTATTATTGTTATT 1 chr1_KI270713v1_random:2 ( 60) TATTATTATTGTTATT 1 chr19:35881936-35882436 ( 19) TATTTTTATTTTTATT 1 chr12:112942521-11294302 ( 78) TATTATTATTGTTATT 1 chr12:1085293-1085793 ( 52) TATTATTATTATTGTT 1 chr6:144482120-144482620 ( 75) TATTATTATTATTGTT 1 chr21:31582137-31582637 ( 14) TATTATTATTATTGTT 1 chr16:24970657-24971157 ( 12) TATTATTATTTTTGTT 1 chr3:187744894-187745394 ( 24) TATTATTATTATTGTT 1 chr19:40556267-40556767 ( 44) TATTGTTATTTTTATT 1 chr14:54818832-54819332 ( 76) TATTGTTATTATTATT 1 chr19:3047348-3047848 ( 15) TATTGTTATTATTATT 1 chr15:73738476-73738976 ( 13) TATTTTTATTTTTTTT 1 chr1:226790505-226791005 ( 85) TATTGTTATTATTATT 1 chr19:16292326-16292826 ( 83) TGTTATTATTATTATT 1 chr12:117189352-11718985 ( 49) TATTATTATTGTTGTT 1 chr19:40508804-40509304 ( 57) TATTATTATTGTTGTT 1 chr20:1469724-1470224 ( 2) TGTTGTTATTATTATT 1 chr1:26329828-26330328 ( 84) TATTATTGTTGTTATT 1 chr1:11297705-11298205 ( 37) TACTATTATTGTTTTT 1 chr17:43574902-43575402 ( 14) TATTATTATTATTGCT 1 chr5:174327120-174327620 ( 57) TGTTATTACTATTATT 1 chr17:7616403-7616903 ( 35) TATTATTATTATTTGT 1 chr1:50978972-50979472 ( 27) TGTTTTTGTTTTTATT 1 chr19:58278888-58279388 ( 62) TATTGTTGTTATTGTT 1 chr16:30408586-30409086 ( 24) TATTATTACTGTTGTT 1 chr1:28648566-28649066 ( 49) TGTTTTTTTTTTTTTT 1 chr19:41376159-41376659 ( 77) TGCTGTTATTATTATT 1 chr12:120533965-12053446 ( 47) TTTTGTTTTTTTTATT 1 chr6:27214821-27215321 ( 64) TGTTTTTGTTTTTGTT 1 chr13:46551297-46551797 ( 56) TATTATTATTGTCGTT 1 chr17:75368277-75368777 ( 48) TGTTTTTTTTTTTGTT 1 chr5:150459727-150460227 ( 75) TATTATTATCGTTGTT 1 chr6:2634300-2634800 ( 41) TGTTATTATTATCTTT 1 chr19:40719213-40719713 ( 79) TACTTTTTTTTTTTTT 1 chr21:36122987-36123487 ( 39) TTTTTTTATTATTTAT 1 chr12:8949986-8950486 ( 69) AATTATTATTGTTACT 1 chr6:44247016-44247516 ( 29) TGTTGTTTTTGTTTTT 1 chr22:32472788-32473288 ( 81) TGTTGTTGTTGTTGTT 1 chr16:3183985-3184485 ( 38) TGTTGTTGTTGTTGTT 1 chr19:38962006-38962506 ( 3) AATTATTATTTATTTT 1 chr12:54051953-54052453 ( 7) TAATGTGATTTTTTTT 1 chr6:135030492-135030992 ( 58) TATTGTTATTTTTCCT 1 chr15:71780260-71780760 ( 59) TGTTTTTGTTTGTTTT 1 chr1:233293988-233294488 ( 79) TACTATTACTTTTTCT 1 chr1:151012476-151012976 ( 83) TATTATTCTCATTTTT 1 chr5:160008628-160009128 ( 25) TATTTATTTATTTATT 1 chr19:40567067-40567567 ( 33) TATTTATTTATTTATT 1 chr6:42565310-42565810 ( 45) TGTTGTTGTTTGTTTT 1 chr7:114085831-114086331 ( 12) TGTTATTGTCGTTGTT 1 chr14:32134462-32134962 ( 54) TGATGATATTTTTATT 1 chr1:232670018-232670518 ( 47) AGTTGTTACTGTTATT 1 chr19:44259443-44259943 ( 23) TTTTTGTATTTTTAGT 1 chr19:39033051-39033551 ( 57) TTTTTGTATTTTTAGT 1 chr1:236089906-236090406 ( 85) TTTTTGTATTTTTAGT 1 chr19:38243750-38244250 ( 11) TTTTATTTTATTTTAT 1 chr1:155193878-155194378 ( 64) AATTTTTGTAGTTTTT 1 chr12:47080555-47081055 ( 3) TTTTTTTCTTTTTTCT 1 chr1:146035622-146036122 ( 51) TTTCTTTATTTGTGTT 1 chr19:1442273-1442773 ( 48) TACTTTTGCATTTTTT 1 chr1:67850428-67850928 ( 83) AGCTCTTATTATTATT 1 chr19:44212611-44213111 ( 11) TATCTTTATTGCTATT 1 chr19:36528785-36529285 ( 45) TGTTAGGACTGTTATT 1 chr1:30488250-30488750 ( 6) TACTATTACCATTACT 1 chr19:48645976-48646476 ( 59) ATTTAATTTTGTTGTT 1 chrUn_KI270467v1:2907-34 ( 29) TACTTTGATATTTTAT 1 chrUn_KI270466v1:187-687 ( 55) TACTTTGATATTTTAT 1 chrUn_KI270467v1:2070-25 ( 33) TACTTTGATATTTTAT 1 chrUn_KI270467v1:3122-36 ( 65) TACTTTGATATTTTAT 1 chr12:70242753-70243253 ( 38) TGTTTGTGTTTGTGTT 1 chr19:34218154-34218654 ( 84) TTTTGTGGTTTGTTTT 1 chr11:62841286-62841786 ( 52) TTATGTTCTTGTTGTT 1 chr1:51519416-51519916 ( 50) CATTATTATTTTCTAT 1 chr5:149449008-149449508 ( 3) TGACATTATTAATATT 1 chr10:45564504-45565004 ( 49) TGTTATTGTCGTCGTT 1 chr17:8226686-8227186 ( 79) TTTTTTTGTGTGTGTT 1 chr19:35535955-35536455 ( 52) TAATAGTACTTTTCTT 1 chr17:8173083-8173583 ( 46) TGCTATTGCTGTTTGT 1 chr1:61692230-61692730 ( 55) TTCTTTTTCTTTCTTT 1 chr5:112160615-112161115 ( 73) TGCTGTGGTTTTTGCT 1 chr5:38783078-38783578 ( 4) TATTGTTGCTGGTGCT 1 chr17:58631420-58631920 ( 6) TTCTGGGTTTTTTTTT 1 chr5:148825829-148826329 ( 1) TTCTGTGTTTGTTTCT 1 chr3:4987101-4987601 ( 49) TATCATTATGGGTACT 1 chr1:146387203-146387703 ( 61) AGATATTATGGTTACT 1 chr17:7484227-7484727 ( 42) TACTTATTTATTCGTT 1 chr1:148402448-148402948 ( 56) AGCTTATACTTATATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTATTATTDTTWTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 9.43842 E= 2.2e-317 -153 -501 -1344 214 160 -1344 -32 -62 -195 -85 -1344 191 -1344 -302 -1344 221 137 -501 -56 28 -195 -1344 -221 208 -1344 -1344 -169 213 173 -343 -85 -83 -1344 -143 -1344 210 -121 -269 -343 201 89 -1344 -21 79 -295 -501 -202 210 -1344 -243 -1344 218 122 -401 -32 33 -172 -156 -269 193 -1344 -1344 -1344 226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTATTATTDTTWTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 111 E= 2.2e-317 0.072072 0.009009 0.000000 0.918919 0.630631 0.000000 0.234234 0.135135 0.054054 0.162162 0.000000 0.783784 0.000000 0.036036 0.000000 0.963964 0.540541 0.009009 0.198198 0.252252 0.054054 0.000000 0.063063 0.882883 0.000000 0.000000 0.090090 0.909910 0.693694 0.027027 0.162162 0.117117 0.000000 0.108108 0.000000 0.891892 0.090090 0.045045 0.027027 0.837838 0.387387 0.000000 0.252252 0.360360 0.027027 0.009009 0.072072 0.891892 0.000000 0.054054 0.000000 0.945946 0.486486 0.018018 0.234234 0.261261 0.063063 0.099099 0.045045 0.792793 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTATTATTDTTWTT MEME-1 regular expression -------------------------------------------------------------------------------- T[AG]TT[AT]TTATT[ATG]TT[ATG]TT -------------------------------------------------------------------------------- Time 421.20 secs. ******************************************************************************** ******************************************************************************** MOTIF ACAMAMACAMAMACAMAMAYAM MEME-2 width = 22 sites = 76 llr = 1201 E-value = 9.5e-196 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAMAMACAMAMACAMAMAYAM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 92a465919463928464a184 pos.-specific C 16:51516:535:71425:6:6 probability G ::::::1:11:::::1::::1: matrix T :2:12::3::11:1:12::4:: bits 2.3 2.0 * * 1.8 * * * 1.6 * * * * * * Relative 1.4 * * * * * * * * Entropy 1.1 * * * * * * * * (22.8 bits) 0.9 * * ** * * * * ** 0.7 *********** *** ****** 0.5 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel ACACACACACACACACACACAC consensus A ATA T ACA ATA T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMAMACAMAMACAMAMAYAM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr20:52972214-52972714 - 11 3.00e-12 ACATATGCAC ACACACACAAACACACACACAC ACCCTCGCAC chr5:134556862-134557362 + 18 3.00e-12 cacacacacc acacaaacacacacacacacac agtgattact chr19:35947339-35947839 - 59 4.80e-12 ACACACACAC ACACACACACACACACACACAC GAACAGTGCC chr19:36837855-36838355 + 55 4.80e-12 GTGCGCGcac acacacacacacacacacatac acacacacac chr1:161097515-161098015 - 23 4.80e-12 ACACACACAC ACACACACACACACACACACAC AGAGAGAGAG chr19:34973379-34973879 - 27 4.80e-12 ACACACACAC ACACACACACACACACACACAC ACTTCCTCTG chr10:92592417-92592917 + 23 4.80e-12 tccgtctcTc acacacacacacacacacacac acacacaAAG chr19:33797037-33797537 - 13 4.80e-12 ACACACACAC ACACACACACACACACACACAC ACCGCGCGGC chr1:21345686-21346186 - 2 4.80e-12 ACACACACAC ACACACACACACACACACACAC A chr19:35819803-35820303 + 55 4.80e-12 aacccaatgt acacacacacacacacacacac acacacacac chr1:226711170-226711670 - 75 4.80e-12 CAAC ACACACACACACACACACACAC ACTCTCTCTC chr19:39320111-39320611 + 1 4.80e-12 . acacacacacacacacacacac acacacacaA chr10:101442020-10144252 - 74 4.80e-12 TACAC ACACACACACACACACACATAC ACACAGAGAC chr1:150235772-150236272 + 72 2.01e-11 gcacgcgcgc acacacatacacacacacatac acacaca chr19:36213947-36214447 + 1 3.61e-11 . acatacacacaaacacacacac CAAGGGATAC chr6:113856712-113857212 + 26 1.43e-10 ACTCGCATAC ACACACATACACATAAACACAC GGAAAGATGG chr19:36916386-36916886 - 59 2.62e-10 TCGTGCCGTC ACACTCACACACACAACCACAC ACCCACACTA chr1:208021748-208022248 - 78 4.59e-10 C ACACACACACACACACACACGA GATACCGTGG chr6:7250761-7251261 - 42 4.59e-10 GAAACCCCAA ATAATAATAACAACAAAAACAA CAATAACAAC chr3:14764280-14764780 - 22 7.78e-10 AACAACAACA ACAACAACAACAACAATAATAA TAATAATAAT chr17:48595521-48596021 - 46 7.78e-10 AATAATAATA ACAACAACAACAACAATAATAA AGATGTGAAA chr3:134795177-134795677 + 26 8.84e-10 cacctctccc ataaacacacacacacacatgc acacccacac chr12:120533965-12053446 + 66 8.84e-10 aacaaaacca aaacaaacaaacaaacaaaaac caaaaaacaa chr12:106075006-10607550 + 79 1.00e-09 CAGTATTAAT CAacacacacacacacacacac chr2:235741461-235741961 - 50 1.46e-09 AACAATAATA ATAATAACAACAACAACAATAA TAATAATAAC chr1:235688752-235689252 + 70 1.46e-09 aataataata ataataacaacaacaacaacaa caacaataa chr10:23411313-23411813 + 22 1.65e-09 atctcaaaTa acaacaacaacaacaacaacaa caacaataat chr3:183107272-183107772 - 66 1.65e-09 CTTCATTTCA ACAACAACAACAACAACAACAA CAAATAATAA chr8:65731762-65732262 - 28 1.65e-09 GTCTAAAATA ACAACAACAACAACAACAACAA CAATAATAAT chr1:19642506-19643006 + 46 1.65e-09 aataataaTa acaacaacaacaacaacaacaa caacttcatt chr1:44487450-44487950 + 48 3.00e-09 aataataata ataataataataacaataataa taatacaaaa chr2:61136737-61137237 + 32 3.00e-09 gactgtctcc aaaaCaacaacaacaacaacaa cgataataat chr5:160008628-160009128 + 44 3.79e-09 ataaataaat aaataaataaataaataaataa ataaataaat chr19:35881936-35882436 + 41 3.79e-09 aataaaaaat aaataaataaataaataaataa ataaataaat chr19:40567067-40567567 + 52 3.79e-09 ataaataaat aaataaataaataaataaataa ataaaGTCTT chr21:36122987-36123487 + 9 3.79e-09 aaaaaaat aaataaataaataaataaataa ataaataaat chr19:16292326-16292826 - 59 3.79e-09 TAATAACAAC AAATAAATAAATAAATAAATAA AATGGCCAGC chr1_KI270713v1_random:2 - 77 4.25e-09 AC ACATACACACGCACAATAATAA TAATAACAAT chr1:154607548-154608048 + 55 4.25e-09 TGGCAAGACG ACACACACCCACACACACACAC TCACAAGACG chr12:112942521-11294302 - 47 4.76e-09 AGAAACAACA ACAATAATAGAAATAATAATAA TAGTAAACAC chr16:85522948-85523448 - 13 6.64e-09 CAGGGCAGAC ACAACCACAGCCACATACACAC AACACACACA chr5:149755386-149755886 - 30 1.40e-08 AATAATAATA ATAATAATAATAATAATAATAA CAATAATAAT chr19:13727312-13727812 + 61 1.40e-08 aataataata ataataataataataataataa ATAAAAGACA chr19:40508804-40509304 - 75 2.11e-08 AAAA AAAAAAAAAAAAAAAGCAATAA ACAACAACAA chr19:37371123-37371623 - 70 3.45e-08 CACGCGCAC AAACACACACACACAGTGACAC AAGATCACAT chr17:18363685-18364185 - 74 4.17e-08 GTCTC AAAAAAATAAAAATAAAAAATA ACAAAAATAA chr8:28401381-28401881 - 34 7.98e-08 CGCACACACG ACACACATACGTACACACATGC GTGCACACAC chr1:226308702-226309202 + 17 9.55e-08 CCCCAGAAAC CAACACACAGACACCATAACAA AGGCGGCGAC chr19:43682205-43682705 + 40 1.48e-07 aataataata ataataataataataataatga aaagaaaaag chr6:89281842-89282342 + 70 1.48e-07 acgtgcacac acattcgcacatatatacacac tctctcaca chr3:9249072-9249572 + 13 1.61e-07 GCGcactcac acacacatgcacacgtacacac actcacgcat chr7:99616303-99616803 + 8 1.76e-07 tgacTac acatacacacacgcacgcacac TACCCGGGGT chr2:43219433-43219933 + 9 1.91e-07 acacaaca cacacaacacacacacacacac TCTTTCAAGG chr6:135030492-135030992 + 34 2.90e-07 AGGAAAAGTA ACAATAAAGAAGAAAATAATAA AGAGGAAAAA chr19:36572894-36573394 + 2 3.71e-07 C TCACACACACACACCACAATGA CGTCGTAAAC chr19:47229841-47230341 + 6 4.02e-07 AACAC ACACACACTACAACCTCCACAC CCCAGCACAC chr3:69250106-69250606 - 1 4.35e-07 ACCACAGCTA TTTAAAATAGACACACACACAC chr19:44164465-44164965 + 61 4.71e-07 ggtgggggcc ataaacactcagaccataataA TACCTAAAGA chr1:11297705-11298205 - 54 5.96e-07 AAAACTTCGT CTCAAAAAAAAAACAAAAAAAC AAAAAACAAT chr1:50978972-50979472 + 45 9.40e-07 caaaaacaaa aaacaaccagccaaaaacaTCA GCTCTTTGGG chr1:40691643-40692143 - 25 1.01e-06 CCTCGCACAG AAACTCCCGCACACTCACACAC CTCTGCTCAG chr21:37366796-37367296 - 71 1.09e-06 GCTCCCTC GCACACACACTCGCACTCACAC CGGTCCCGCC chr6:26571549-26572049 - 21 1.09e-06 TCTTGCTGAC ACATAAGCAGCTAACAACACAC TCCCGTATCA chr20:1469724-1470224 + 72 1.09e-06 ACAACATCTT CAACTAATGACAATAATAATAA AATAACA chr19:36215210-36215710 - 8 1.17e-06 CCTCTTAGGC ACAATCACACACAATCCCGCAC CCAGTTT chr19:38224231-38224731 + 66 1.36e-06 attcacgcgg atactcacagcctcccacacac tcctactcac chr22:29602720-29603220 + 62 1.36e-06 aataataata acaataataataataatTCTAA AGGGAAGCAG chr11:62841286-62841786 + 29 1.46e-06 CACACTAGCG ATAAAAACACCTAATCCAACTC AAACAACAAG chr7:66920710-66921210 + 74 1.46e-06 tacacgatgc acactacaagccacatacacgc actac chr5:174327120-174327620 - 77 1.94e-06 TA ATAATAAAAACAACAGTTATGA TGACAATAAT chr19:43901264-43901764 + 50 2.94e-06 TTCATTTGTC TAACGCACACACACGTACACAA CCCTGTTCAT chr8:21788557-21789057 - 29 2.94e-06 AGAGAGAAAG ACACACGCACGCAGAGACACAC GGTCACTGGA chr6:42565310-42565810 - 19 3.60e-06 ACAACAAAAC ACACCCAAACAAGCAAAGATTC AGCATTTAAC chr1:232670018-232670518 + 18 3.85e-06 CGCTTAAAAG CAATCAAAAAAGAACAAAATAC CATCATCAAT chr19:36488967-36489467 + 17 5.01e-06 CACTACGGGG ACAAACGCAGTAACACTCAACC AGGCACAAGC chr19:39411901-39412401 - 6 6.91e-06 TACACATCTA ATAAACCAACCAAAACATCTAC ATCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMAMACAMAMACAMAMAYAM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52972214-52972714 3e-12 10_[-2]_68 chr5:134556862-134557362 3e-12 17_[+2]_61 chr19:35947339-35947839 4.8e-12 58_[-2]_20 chr19:36837855-36838355 4.8e-12 54_[+2]_24 chr1:161097515-161098015 4.8e-12 22_[-2]_56 chr19:34973379-34973879 4.8e-12 26_[-2]_52 chr10:92592417-92592917 4.8e-12 22_[+2]_56 chr19:33797037-33797537 4.8e-12 12_[-2]_66 chr1:21345686-21346186 4.8e-12 1_[-2]_77 chr19:35819803-35820303 4.8e-12 54_[+2]_24 chr1:226711170-226711670 4.8e-12 74_[-2]_4 chr19:39320111-39320611 4.8e-12 [+2]_78 chr10:101442020-10144252 4.8e-12 73_[-2]_5 chr1:150235772-150236272 2e-11 71_[+2]_7 chr19:36213947-36214447 3.6e-11 [+2]_78 chr6:113856712-113857212 1.4e-10 25_[+2]_53 chr19:36916386-36916886 2.6e-10 58_[-2]_20 chr1:208021748-208022248 4.6e-10 77_[-2]_1 chr6:7250761-7251261 4.6e-10 41_[-2]_37 chr3:14764280-14764780 7.8e-10 21_[-2]_57 chr17:48595521-48596021 7.8e-10 45_[-2]_33 chr3:134795177-134795677 8.8e-10 25_[+2]_53 chr12:120533965-12053446 8.8e-10 65_[+2]_13 chr12:106075006-10607550 1e-09 78_[+2] chr2:235741461-235741961 1.5e-09 49_[-2]_29 chr1:235688752-235689252 1.5e-09 69_[+2]_9 chr10:23411313-23411813 1.7e-09 21_[+2]_57 chr3:183107272-183107772 1.7e-09 65_[-2]_13 chr8:65731762-65732262 1.7e-09 27_[-2]_51 chr1:19642506-19643006 1.7e-09 45_[+2]_33 chr1:44487450-44487950 3e-09 47_[+2]_31 chr2:61136737-61137237 3e-09 31_[+2]_47 chr5:160008628-160009128 3.8e-09 43_[+2]_35 chr19:35881936-35882436 3.8e-09 40_[+2]_38 chr19:40567067-40567567 3.8e-09 51_[+2]_27 chr21:36122987-36123487 3.8e-09 8_[+2]_70 chr19:16292326-16292826 3.8e-09 58_[-2]_20 chr1_KI270713v1_random:2 4.2e-09 76_[-2]_2 chr1:154607548-154608048 4.2e-09 54_[+2]_24 chr12:112942521-11294302 4.8e-09 46_[-2]_32 chr16:85522948-85523448 6.6e-09 12_[-2]_66 chr5:149755386-149755886 1.4e-08 29_[-2]_49 chr19:13727312-13727812 1.4e-08 60_[+2]_18 chr19:40508804-40509304 2.1e-08 74_[-2]_4 chr19:37371123-37371623 3.4e-08 69_[-2]_9 chr17:18363685-18364185 4.2e-08 73_[-2]_5 chr8:28401381-28401881 8e-08 33_[-2]_45 chr1:226308702-226309202 9.5e-08 16_[+2]_62 chr19:43682205-43682705 1.5e-07 39_[+2]_39 chr6:89281842-89282342 1.5e-07 69_[+2]_9 chr3:9249072-9249572 1.6e-07 12_[+2]_66 chr7:99616303-99616803 1.8e-07 7_[+2]_71 chr2:43219433-43219933 1.9e-07 8_[+2]_70 chr6:135030492-135030992 2.9e-07 33_[+2]_45 chr19:36572894-36573394 3.7e-07 1_[+2]_77 chr19:47229841-47230341 4e-07 5_[+2]_73 chr3:69250106-69250606 4.4e-07 [-2]_78 chr19:44164465-44164965 4.7e-07 60_[+2]_18 chr1:11297705-11298205 6e-07 53_[-2]_25 chr1:50978972-50979472 9.4e-07 44_[+2]_34 chr1:40691643-40692143 1e-06 24_[-2]_54 chr21:37366796-37367296 1.1e-06 70_[-2]_8 chr6:26571549-26572049 1.1e-06 20_[-2]_58 chr20:1469724-1470224 1.1e-06 71_[+2]_7 chr19:36215210-36215710 1.2e-06 7_[-2]_71 chr19:38224231-38224731 1.4e-06 65_[+2]_13 chr22:29602720-29603220 1.4e-06 61_[+2]_17 chr11:62841286-62841786 1.5e-06 28_[+2]_50 chr7:66920710-66921210 1.5e-06 73_[+2]_5 chr5:174327120-174327620 1.9e-06 76_[-2]_2 chr19:43901264-43901764 2.9e-06 49_[+2]_29 chr8:21788557-21789057 2.9e-06 28_[-2]_50 chr6:42565310-42565810 3.6e-06 18_[-2]_60 chr1:232670018-232670518 3.9e-06 17_[+2]_61 chr19:36488967-36489467 5e-06 16_[+2]_62 chr19:39411901-39412401 6.9e-06 5_[-2]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMAMACAMAMACAMAMAYAM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAMAMACAMAMACAMAMAYAM width=22 seqs=76 chr20:52972214-52972714 ( 11) ACACACACAAACACACACACAC 1 chr5:134556862-134557362 ( 18) ACACAAACACACACACACACAC 1 chr19:35947339-35947839 ( 59) ACACACACACACACACACACAC 1 chr19:36837855-36838355 ( 55) ACACACACACACACACACATAC 1 chr1:161097515-161098015 ( 23) ACACACACACACACACACACAC 1 chr19:34973379-34973879 ( 27) ACACACACACACACACACACAC 1 chr10:92592417-92592917 ( 23) ACACACACACACACACACACAC 1 chr19:33797037-33797537 ( 13) ACACACACACACACACACACAC 1 chr1:21345686-21346186 ( 2) ACACACACACACACACACACAC 1 chr19:35819803-35820303 ( 55) ACACACACACACACACACACAC 1 chr1:226711170-226711670 ( 75) ACACACACACACACACACACAC 1 chr19:39320111-39320611 ( 1) ACACACACACACACACACACAC 1 chr10:101442020-10144252 ( 74) ACACACACACACACACACATAC 1 chr1:150235772-150236272 ( 72) ACACACATACACACACACATAC 1 chr19:36213947-36214447 ( 1) ACATACACACAAACACACACAC 1 chr6:113856712-113857212 ( 26) ACACACATACACATAAACACAC 1 chr19:36916386-36916886 ( 59) ACACTCACACACACAACCACAC 1 chr1:208021748-208022248 ( 78) ACACACACACACACACACACGA 1 chr6:7250761-7251261 ( 42) ATAATAATAACAACAAAAACAA 1 chr3:14764280-14764780 ( 22) ACAACAACAACAACAATAATAA 1 chr17:48595521-48596021 ( 46) ACAACAACAACAACAATAATAA 1 chr3:134795177-134795677 ( 26) ATAAACACACACACACACATGC 1 chr12:120533965-12053446 ( 66) AAACAAACAAACAAACAAAAAC 1 chr12:106075006-10607550 ( 79) CAACACACACACACACACACAC 1 chr2:235741461-235741961 ( 50) ATAATAACAACAACAACAATAA 1 chr1:235688752-235689252 ( 70) ATAATAACAACAACAACAACAA 1 chr10:23411313-23411813 ( 22) ACAACAACAACAACAACAACAA 1 chr3:183107272-183107772 ( 66) ACAACAACAACAACAACAACAA 1 chr8:65731762-65732262 ( 28) ACAACAACAACAACAACAACAA 1 chr1:19642506-19643006 ( 46) ACAACAACAACAACAACAACAA 1 chr1:44487450-44487950 ( 48) ATAATAATAATAACAATAATAA 1 chr2:61136737-61137237 ( 32) AAAACAACAACAACAACAACAA 1 chr5:160008628-160009128 ( 44) AAATAAATAAATAAATAAATAA 1 chr19:35881936-35882436 ( 41) AAATAAATAAATAAATAAATAA 1 chr19:40567067-40567567 ( 52) AAATAAATAAATAAATAAATAA 1 chr21:36122987-36123487 ( 9) AAATAAATAAATAAATAAATAA 1 chr19:16292326-16292826 ( 59) AAATAAATAAATAAATAAATAA 1 chr1_KI270713v1_random:2 ( 77) ACATACACACGCACAATAATAA 1 chr1:154607548-154608048 ( 55) ACACACACCCACACACACACAC 1 chr12:112942521-11294302 ( 47) ACAATAATAGAAATAATAATAA 1 chr16:85522948-85523448 ( 13) ACAACCACAGCCACATACACAC 1 chr5:149755386-149755886 ( 30) ATAATAATAATAATAATAATAA 1 chr19:13727312-13727812 ( 61) ATAATAATAATAATAATAATAA 1 chr19:40508804-40509304 ( 75) AAAAAAAAAAAAAAAGCAATAA 1 chr19:37371123-37371623 ( 70) AAACACACACACACAGTGACAC 1 chr17:18363685-18364185 ( 74) AAAAAAATAAAAATAAAAAATA 1 chr8:28401381-28401881 ( 34) ACACACATACGTACACACATGC 1 chr1:226308702-226309202 ( 17) CAACACACAGACACCATAACAA 1 chr19:43682205-43682705 ( 40) ATAATAATAATAATAATAATGA 1 chr6:89281842-89282342 ( 70) ACATTCGCACATATATACACAC 1 chr3:9249072-9249572 ( 13) ACACACATGCACACGTACACAC 1 chr7:99616303-99616803 ( 8) ACATACACACACGCACGCACAC 1 chr2:43219433-43219933 ( 9) CACACAACACACACACACACAC 1 chr6:135030492-135030992 ( 34) ACAATAAAGAAGAAAATAATAA 1 chr19:36572894-36573394 ( 2) TCACACACACACACCACAATGA 1 chr19:47229841-47230341 ( 6) ACACACACTACAACCTCCACAC 1 chr3:69250106-69250606 ( 1) TTTAAAATAGACACACACACAC 1 chr19:44164465-44164965 ( 61) ATAAACACTCAGACCATAATAA 1 chr1:11297705-11298205 ( 54) CTCAAAAAAAAAACAAAAAAAC 1 chr1:50978972-50979472 ( 45) AAACAACCAGCCAAAAACATCA 1 chr1:40691643-40692143 ( 25) AAACTCCCGCACACTCACACAC 1 chr21:37366796-37367296 ( 71) GCACACACACTCGCACTCACAC 1 chr6:26571549-26572049 ( 21) ACATAAGCAGCTAACAACACAC 1 chr20:1469724-1470224 ( 72) CAACTAATGACAATAATAATAA 1 chr19:36215210-36215710 ( 8) ACAATCACACACAATCCCGCAC 1 chr19:38224231-38224731 ( 66) ATACTCACAGCCTCCCACACAC 1 chr22:29602720-29603220 ( 62) ACAATAATAATAATAATTCTAA 1 chr11:62841286-62841786 ( 29) ATAAAAACACCTAATCCAACTC 1 chr7:66920710-66921210 ( 74) ACACTACAAGCCACATACACGC 1 chr5:174327120-174327620 ( 77) ATAATAAAAACAACAGTTATGA 1 chr19:43901264-43901764 ( 50) TAACGCACACACACGTACACAA 1 chr8:21788557-21789057 ( 29) ACACACGCACGCAGAGACACAC 1 chr6:42565310-42565810 ( 19) ACACCCAAACAAGCAAAGATTC 1 chr1:232670018-232670518 ( 18) CAATCAAAAAAGAACAAAATAC 1 chr19:36488967-36489467 ( 17) ACAAACGCAGTAACACTCAACC 1 chr19:39411901-39412401 ( 6) ATAAACCAACCAAAACATCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMAMACAMAMACAMAMAYAM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.099 E= 9.5e-196 206 -188 -447 -240 18 96 -1289 -8 220 -347 -1289 -398 92 66 -1289 -53 154 -101 -447 18 118 85 -1289 -1289 210 -247 -247 -1289 -99 114 -1289 26 212 -447 -247 -298 92 74 -130 -1289 154 -15 -288 -118 72 78 -288 -82 218 -1289 -288 -398 -18 123 -447 -82 201 -166 -347 -240 92 48 -247 -53 151 -77 -447 10 101 82 -347 -240 220 -347 -447 -1289 -198 92 -1289 92 201 -347 -166 -240 106 96 -1289 -1289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMAMACAMAMACAMAMAYAM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 76 E= 9.5e-196 0.868421 0.078947 0.013158 0.039474 0.236842 0.565789 0.000000 0.197368 0.960526 0.026316 0.000000 0.013158 0.394737 0.460526 0.000000 0.144737 0.605263 0.144737 0.013158 0.236842 0.473684 0.526316 0.000000 0.000000 0.894737 0.052632 0.052632 0.000000 0.105263 0.644737 0.000000 0.250000 0.907895 0.013158 0.052632 0.026316 0.394737 0.486842 0.118421 0.000000 0.605263 0.263158 0.039474 0.092105 0.342105 0.500000 0.039474 0.118421 0.947368 0.000000 0.039474 0.013158 0.184211 0.684211 0.013158 0.118421 0.842105 0.092105 0.026316 0.039474 0.394737 0.407895 0.052632 0.144737 0.592105 0.171053 0.013158 0.223684 0.421053 0.513158 0.026316 0.039474 0.960526 0.026316 0.013158 0.000000 0.052632 0.552632 0.000000 0.394737 0.842105 0.026316 0.092105 0.039474 0.434211 0.565789 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAMAMACAMAMACAMAMAYAM MEME-2 regular expression -------------------------------------------------------------------------------- A[CA]A[CA][AT][CA]A[CT]A[CA][AC][CA]ACA[CA][AT][CA]A[CT]A[CA] -------------------------------------------------------------------------------- Time 804.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 width = 38 sites = 16 llr = 644 E-value = 1.9e-140 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::9:11a:::1919:12:31:a::::9:::19:::: pos.-specific C 1::a1::1::981:1::6:8:9a:8::a:8:99:199: probability G 119:1a18:9:19:9:128:71::::a:1::::191:1 matrix T 991:::9::111:1:191121:::2a:::2a1::::19 bits 2.3 * * * * 2.0 * * * * * 1.8 * * * * * ** ** **** * * * 1.6 ******* *** * ** ** **** **** ** Relative 1.4 ******* *** * ** ** **** **** *** Entropy 1.1 ******* *** ***** * ***************** (58.1 bits) 0.9 ***************** ******************** 0.7 ***************** ******************** 0.5 ************************************** 0.2 ************************************** 0.0 -------------------------------------- Multilevel TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------- chr5:181218520-181219020 + 43 4.19e-23 catgcggagc ttgcagtgagccgagatcgcgccactgcactccagcct gggcgacaca chr22:32472788-32473288 + 17 1.02e-22 gaggcggagc ttgcagtgagccgagatcacgccactgcactccagcct gggcgacaga chr21:39384081-39384581 - 19 5.84e-22 GAGGCAGAGG TTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCT CGGCAAAAGA chr11:59557580-59558080 + 63 1.05e-21 gaggcggagg ttgcagtgagccgagatggcgccattgcactccagcct chr6:27231225-27231725 + 61 1.05e-21 gaggcggagg ttgcagtgagccgagatcgtgccactgcattccagcct ga chr1:226790505-226791005 + 20 1.30e-21 gaggtagagg ttgcagtgagccgagattgtgccactgcactccagcct gggtgacaga chr9:129824300-129824800 + 35 1.86e-21 gaggcggaga ttgcagtgagccgagatctcaccactgcactccagcct gggagacaga chr12:120201292-12020179 - 32 1.04e-19 GAGGCGGAGC TTGCAGTCAGCCGAGATGGCGCCACTGCGCTCCAGCCT GGGCGACAGA chr19:34478445-34478945 - 50 1.49e-19 GAGGCAGAGG TTGCAGTGAGCCAAGATGACACCACTGCATTCCAGCCT GGGTGACACA chr22:39399223-39399723 + 55 1.68e-19 aaggcagagg ttgcagggagctgtgatcgcgccactgcactccagcct gggtgaca chr8:43093769-43094269 + 46 3.02e-19 ggggcggagg tttcagtgagccgaaatcgcgccactgcacttcagcct gggggccaga chr19:38954718-38955218 - 56 3.84e-19 GCGGAGC TTGCAGTGAGCCGACATCGCACCACTGCATTCCAGGCT GGGCAACAGA chr16:40589-41089 + 9 5.34e-19 ggcagagg ttgcagtgagccgagatcatgacattgcactccaccct gggcaacaag chr20:37177999-37178499 + 48 2.66e-18 gatgtcgagg ctgcagtaagctgtgatcgcaccactgcactccagcct gggcgacaga chr6:28790339-28790839 + 48 9.47e-15 gaggcggagg ttgcggtgagccgagttcgctccattgcactcagcctg ggcaacaaga chr10:13298621-13299121 + 37 6.76e-13 aggttgcagt gggccgacattgcagagtgcggcactgcactccagcct gaccacagag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:181218520-181219020 4.2e-23 42_[+3]_20 chr22:32472788-32473288 1e-22 16_[+3]_46 chr21:39384081-39384581 5.8e-22 18_[-3]_44 chr11:59557580-59558080 1.1e-21 62_[+3] chr6:27231225-27231725 1.1e-21 60_[+3]_2 chr1:226790505-226791005 1.3e-21 19_[+3]_43 chr9:129824300-129824800 1.9e-21 34_[+3]_28 chr12:120201292-12020179 1e-19 31_[-3]_31 chr19:34478445-34478945 1.5e-19 49_[-3]_13 chr22:39399223-39399723 1.7e-19 54_[+3]_8 chr8:43093769-43094269 3e-19 45_[+3]_17 chr19:38954718-38955218 3.8e-19 55_[-3]_7 chr16:40589-41089 5.3e-19 8_[+3]_54 chr20:37177999-37178499 2.7e-18 47_[+3]_15 chr6:28790339-28790839 9.5e-15 47_[+3]_15 chr10:13298621-13299121 6.8e-13 36_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT width=38 seqs=16 chr5:181218520-181219020 ( 43) TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT 1 chr22:32472788-32473288 ( 17) TTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCT 1 chr21:39384081-39384581 ( 19) TTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCT 1 chr11:59557580-59558080 ( 63) TTGCAGTGAGCCGAGATGGCGCCATTGCACTCCAGCCT 1 chr6:27231225-27231725 ( 61) TTGCAGTGAGCCGAGATCGTGCCACTGCATTCCAGCCT 1 chr1:226790505-226791005 ( 20) TTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCT 1 chr9:129824300-129824800 ( 35) TTGCAGTGAGCCGAGATCTCACCACTGCACTCCAGCCT 1 chr12:120201292-12020179 ( 32) TTGCAGTCAGCCGAGATGGCGCCACTGCGCTCCAGCCT 1 chr19:34478445-34478945 ( 50) TTGCAGTGAGCCAAGATGACACCACTGCATTCCAGCCT 1 chr22:39399223-39399723 ( 55) TTGCAGGGAGCTGTGATCGCGCCACTGCACTCCAGCCT 1 chr8:43093769-43094269 ( 46) TTTCAGTGAGCCGAAATCGCGCCACTGCACTTCAGCCT 1 chr19:38954718-38955218 ( 56) TTGCAGTGAGCCGACATCGCACCACTGCATTCCAGGCT 1 chr16:40589-41089 ( 9) TTGCAGTGAGCCGAGATCATGACATTGCACTCCACCCT 1 chr20:37177999-37178499 ( 48) CTGCAGTAAGCTGTGATCGCACCACTGCACTCCAGCCT 1 chr6:28790339-28790839 ( 48) TTGCGGTGAGCCGAGTTCGCTCCATTGCACTCAGCCTG 1 chr10:13298621-13299121 ( 37) GGGCCGACATTGCAGAGTGCGGCACTGCACTCCAGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 38 n= 37800 bayes= 11.2055 E= 1.9e-140 -1064 -222 -222 207 -1064 -1064 -222 217 -1064 -1064 168 -174 -1064 178 -1064 -1064 207 -222 -222 -1064 -1064 -1064 178 -1064 -174 -1064 -222 207 -174 -122 148 -1064 226 -1064 -1064 -1064 -1064 -1064 168 -174 -1064 168 -1064 -174 -1064 148 -222 -74 -174 -222 158 -1064 207 -1064 -1064 -74 -174 -222 158 -1064 217 -1064 -1064 -174 -1064 -1064 -222 217 -174 110 -64 -74 -15 -1064 136 -174 -1064 148 -1064 -15 26 -1064 124 -174 -174 158 -222 -1064 -1064 178 -1064 -1064 226 -1064 -1064 -1064 -1064 148 -1064 -15 -1064 -1064 -1064 226 -1064 -1064 178 -1064 -1064 178 -1064 -1064 217 -1064 -222 -1064 -1064 148 -1064 -15 -1064 -1064 -1064 226 -1064 168 -1064 -174 -174 168 -1064 -1064 217 -1064 -222 -1064 -1064 -122 158 -1064 -1064 168 -222 -1064 -1064 168 -1064 -174 -1064 -1064 -222 217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 38 nsites= 16 E= 1.9e-140 0.000000 0.062500 0.062500 0.875000 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.937500 0.062500 0.000000 1.000000 0.000000 0.000000 0.875000 0.062500 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.062500 0.000000 0.062500 0.875000 0.062500 0.125000 0.812500 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.937500 0.000000 0.062500 0.000000 0.812500 0.062500 0.125000 0.062500 0.062500 0.875000 0.000000 0.875000 0.000000 0.000000 0.125000 0.062500 0.062500 0.875000 0.000000 0.937500 0.000000 0.000000 0.062500 0.000000 0.000000 0.062500 0.937500 0.062500 0.625000 0.187500 0.125000 0.187500 0.000000 0.750000 0.062500 0.000000 0.812500 0.000000 0.187500 0.250000 0.000000 0.687500 0.062500 0.062500 0.875000 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.812500 0.000000 0.187500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.812500 0.000000 0.187500 0.000000 0.000000 0.000000 1.000000 0.000000 0.937500 0.000000 0.062500 0.062500 0.937500 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.062500 0.937500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT MEME-3 regular expression -------------------------------------------------------------------------------- TTGCAGTGAGCCGAGATCGC[GA]CCACTGCACTCCAGCCT -------------------------------------------------------------------------------- Time 1141.23 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 width = 49 sites = 8 llr = 427 E-value = 1.0e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::19:::5::a1::::a1:18:1a:6a:::::::96:::4:1a:1: pos.-specific C aa::a:19:5:::::1a1::::6::1::1::91a::::19a61:::::9 probability G :::a::::::5aa:99::a:9a:398:a3:::9:::a131::599:a8: matrix T :::::9:1a5:::::::9::::3:1:::::a1::aa:::::4:1:::11 bits 2.3 * * * * * ** ** * 2.0 * * * * * ** ** * 1.8 ****** * *** * ** * ** ** **** * ** 1.6 ******* * *** **** * ** ** ***** * ** Relative 1.4 ********* **** ****** ** ** *** ***** * **** * Entropy 1.1 ********************** ** ** ********* ** **** * (77.0 bits) 0.9 ********************** ** ** ********* *** ****** 0.7 ****************************************** ****** 0.5 ************************************************* 0.2 ************************************************* 0.0 ------------------------------------------------- Multilevel CCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGC consensus TG TG G G TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------- chr12:49289588-49290088 + 37 1.13e-27 ggatgtagtc ccagctacttgggaggctgaggcaggagaatcgcttgaaccccggaggc gaagtttgca chr19:35910304-35910804 + 22 3.44e-27 gcctgtaatt ccagctactcaggagcctgaggcaggagaatcgcttgaacccaggaggc agaggttgca chr6:27231225-27231725 + 7 4.21e-27 gtaacc ccagctactcgggaggctgaggcaggagaatcgcttgaacctgtgaggc ggaggttgca chr11:59557580-59558080 + 9 2.38e-26 ctgtaatc ccagctacttaggaggctgaggcgggagcatcgcttgaacctgggaggc ggaggttgca chr1:236089906-236090406 - 4 1.79e-25 GCCTGTAATC CCAGCTACTCAGGAGGCTGAGGCATAAGAATTGCTTGAACCTGGGAGGC GGA chr22:39399223-39399723 + 1 4.67e-24 . ccagctactcgggaagctgaggaaggagaatcgcttgaggccggaaggc agaggttgca chr19:43575749-43576249 - 39 9.74e-23 GCGTGTAATC CCAGCTACTTAGGAGGCTGAAGTGGGAGGATCCCTTGGCCCCAGGAGAC AGGGGTTGCA chr19:45439225-45439725 + 21 9.12e-22 gcctttaatc ccagcactttgggaggccgaggtagcaggatcgcttgagcccaggagtt ctagacaatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:49289588-49290088 1.1e-27 36_[+4]_15 chr19:35910304-35910804 3.4e-27 21_[+4]_30 chr6:27231225-27231725 4.2e-27 6_[+4]_45 chr11:59557580-59558080 2.4e-26 8_[+4]_43 chr1:236089906-236090406 1.8e-25 3_[-4]_48 chr22:39399223-39399723 4.7e-24 [+4]_51 chr19:43575749-43576249 9.7e-23 38_[-4]_13 chr19:45439225-45439725 9.1e-22 20_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC width=49 seqs=8 chr12:49289588-49290088 ( 37) CCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCCGGAGGC 1 chr19:35910304-35910804 ( 22) CCAGCTACTCAGGAGCCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGC 1 chr6:27231225-27231725 ( 7) CCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGTGAGGC 1 chr11:59557580-59558080 ( 9) CCAGCTACTTAGGAGGCTGAGGCGGGAGCATCGCTTGAACCTGGGAGGC 1 chr1:236089906-236090406 ( 4) CCAGCTACTCAGGAGGCTGAGGCATAAGAATTGCTTGAACCTGGGAGGC 1 chr22:39399223-39399723 ( 1) CCAGCTACTCGGGAAGCTGAGGAAGGAGAATCGCTTGAGGCCGGAAGGC 1 chr19:43575749-43576249 ( 39) CCAGCTACTTAGGAGGCTGAAGTGGGAGGATCCCTTGGCCCCAGGAGAC 1 chr19:45439225-45439725 ( 21) CCAGCACTTTGGGAGGCCGAGGTAGCAGGATCGCTTGAGCCCAGGAGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 31200 bayes= 11.9289 E= 1.0e-068 -965 178 -965 -965 -965 178 -965 -965 226 -965 -965 -965 -965 -965 178 -965 -965 178 -965 -965 -74 -965 -965 207 207 -122 -965 -965 -965 158 -965 -74 -965 -965 -965 226 -965 78 -965 126 126 -965 78 -965 -965 -965 178 -965 -965 -965 178 -965 226 -965 -965 -965 -74 -965 158 -965 -965 -122 158 -965 -965 178 -965 -965 -965 -122 -965 207 -965 -965 178 -965 226 -965 -965 -965 -74 -965 158 -965 -965 -965 178 -965 -74 110 -965 26 185 -965 -22 -965 -965 -965 158 -74 -74 -122 136 -965 226 -965 -965 -965 -965 -965 178 -965 158 -122 -22 -965 226 -965 -965 -965 -965 -965 -965 226 -965 158 -965 -74 -965 -122 158 -965 -965 178 -965 -965 -965 -965 -965 226 -965 -965 -965 226 -965 -965 178 -965 207 -965 -122 -965 158 -122 -22 -965 -965 158 -122 -965 -965 178 -965 -965 -965 110 -965 85 85 -122 78 -965 -965 -965 158 -74 -74 -965 158 -965 226 -965 -965 -965 -965 -965 178 -965 -74 -965 136 -74 -965 158 -965 -74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 8 E= 1.0e-068 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.875000 0.875000 0.125000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.625000 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 0.875000 0.125000 0.125000 0.125000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.125000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.625000 0.125000 0.250000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.375000 0.125000 0.500000 0.000000 0.000000 0.000000 0.875000 0.125000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.750000 0.125000 0.000000 0.875000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCTACTYRGGAGGCTGAGGCAGGAGAATCGCTTGAACCYRGGAGGC MEME-4 regular expression -------------------------------------------------------------------------------- CCAGCTACT[CT][AG]GGAGGCTGAGG[CT][AG]GGAG[AG]ATCGCTTGA[AG]CC[CT][GA]GGAGGC -------------------------------------------------------------------------------- Time 1477.28 secs. ******************************************************************************** ******************************************************************************** MOTIF RRGAGRVARRRARAGR MEME-5 width = 16 sites = 91 llr = 985 E-value = 3.5e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRGAGRVARRRARAGR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4418353846464a26 pos.-specific C :::2::3::::21:1: probability G 668:754264625:74 matrix T ::1::::::11::::: bits 2.3 2.0 * 1.8 * 1.6 * Relative 1.4 * * * Entropy 1.1 *** * * * (15.6 bits) 0.9 ****** *** * * 0.7 ****** ********* 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel GGGAGAGAGAGAGAGA consensus AA CAGAGAGAGA G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGRVARRRARAGR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:161097515-161098015 - 2 7.02e-09 CACACAGAGA GAGAGAGAGAGAGAGA G chr5:174327120-174327620 - 20 7.02e-09 CACAAAGAAG AGGAGGAAGAGAAAGA CGCTTTTATG chr8:21788557-21789057 - 63 7.02e-09 AGCGAGGGAG AGGAGAGAGAGAGAGA GGAGAGAGAA chr1:155244589-155245089 + 61 7.02e-09 gagagcgagc gagagagagagagaga gagagaggag chr1:226711170-226711670 + 37 7.02e-09 TGTTTTGAAa gagagagagagagaga gagagagaga chr17:48728653-48729153 - 1 7.02e-09 GAGAAAGAGA GAGAGAGAGAGAGAGA chr10:101442020-10144252 - 43 7.02e-09 GAGACAGAGA GAGAGAGAGAGAGAGA TTCTAATTCA chr16:50369047-50369547 - 6 1.37e-08 GAAGAAGGGA AAGAGAAAGAAAGAGA GGGAG chr12:47080555-47081055 - 47 2.39e-08 AGAAAGGAGA GAGAGGGAGAGAGAGA GGGAGAGAGA chr1:61692230-61692730 + 6 3.89e-08 Caaaa aagaaagaaagaaaga tggaaagaag chr1:234723959-234724459 + 9 6.03e-08 gggaggtg gagagagagagaAAAA AACCACCCTG chr15:73738476-73738976 + 35 1.10e-07 aataaaaaaa gaaagaaagaaaaaga aaaatggggt chr8:100952117-100952617 - 73 1.31e-07 GGCTGCAGGG GAGAGGGAGAGAGAGG GCGTTGGGGA chr9:129824300-129824800 + 73 1.89e-07 actccagcct gggagacagagcaaga ctgtgtcCCC chr12:56158185-56158685 + 59 2.28e-07 GATTGGGGAC GAGAGGCAGGAAGAGA CGGGTGGGGG chr17:7484227-7484727 - 60 2.28e-07 TTTTTGGGGG AGGAAGAAGAAAAAGG GTAACGAATA chr1:225998873-225999373 - 83 4.46e-07 TT AGGAAGGAGAAAGAGG CAGACAGGTG chr12:106357575-10635807 - 78 4.46e-07 CTCACGA AGGAGGAAGAAACAGA TAGAACCTCC chr1:70411134-70411634 - 50 5.24e-07 CCGCGAAAGA AGAAGAGAGGAAAAGA ACACCGAAGA chr6:3231621-3232121 + 29 6.12e-07 CAGGCCGGGT GGAAAACAAAAAGAGA AGAAGTGATT chr19:43682205-43682705 + 67 6.12e-07 aatgaaaaga aaaagaaaagaaaaga aaaaGGAGAA chr1:109484058-109484558 - 85 8.24e-07 . AGGAGAAAGATAAAGG CAAGCCTATA chr16:54286341-54286841 - 38 8.24e-07 AAGCCCTCGT GAGAAAGGGAAAGAGA AGGGGAGAGG chr10:42782454-42782954 - 72 1.09e-06 GGAAACAAGA AGGCAGAAAAAAGAGA CCGGCATGGG chr19:42075307-42075807 - 14 1.09e-06 AGGCAACAGG AAGAAACAGAGAAAAG ACCGAGGGGA chr1:21345686-21346186 + 64 1.25e-06 gcgTGTGTGT AAGAGGGAGGAGAAGA GGAGACAGAA chr22:20495983-20496483 - 63 1.62e-06 GGGGGAGTAA GAGAGGAGAGAAGAGA GTGAAGAAGG chr19:34973379-34973879 - 84 1.62e-06 T GGGCGACAGAGGGAGA CTCCATCTCA chr6:89080570-89081070 - 80 1.62e-06 CAACG AAGAGAGAAGGAGAAG GTGAATGAAG chr5:71455483-71455983 + 23 1.62e-06 cggcggcggc gggagagaggaggagg cggcggcggg chr10:117542139-11754263 + 23 1.83e-06 gaggaagaag aggaggaggaggaaga agaggaggag chr19:40567067-40567567 + 7 1.83e-06 cagcct gggcgacagagcaaga ctgtctcaaa chr20:48921094-48921594 - 20 1.83e-06 GGAGAAGGCG AGTAGGAAAGAAAAGA GGTGAGGGAG chr10:46030169-46030669 + 34 1.83e-06 GCGTGTggag gggagggaagggaagg agaaggcagA chr9:92325141-92325641 - 35 2.06e-06 TTGGAAATCG AGTAGGAAGGAAGAGA GGATGCTCCG chr1:173825151-173825651 - 81 2.06e-06 ATGG GGGAAAAAATGAAAAA TGGAATAAAA chr1:50978972-50979472 + 76 2.06e-06 AGCTCTTTGG GGGAGGAAGTAAAAAA CCACCAATC chr11:66001985-66002485 + 73 2.06e-06 TTCCGGGTCC GGGCAGCAGAGAAAGG AAGTCCTCTC chr19:48645976-48646476 - 26 2.61e-06 CGGGAGAGGA GAGAGGGAGGGGGAGG AGGGAGGAAG chr15:71780260-71780760 + 77 2.61e-06 CAAAAACACC AAAAGAAAAAAAAAAG CCATTTAA chr10:71319314-71319814 - 13 2.92e-06 AGTCTCAGGG AGGAGGAGGGGAGAGG ATTTGGGGAA chr17:59209678-59210178 + 37 3.27e-06 GAAACAAACT AGGAGAGGAGAAGAGG AGGCGGAACT chr6:113856712-113857212 + 74 3.27e-06 GGAGCGAGTG GAGAGAGAGAGACACA CGGATATAGA chr19:38954718-38955218 - 40 3.27e-06 ATTCCAGGCT GGGCAACAGAGCAAGA CTCCGTCTCA chr7:139340520-139341020 - 63 3.27e-06 GTTTAGAAAG GGGAAAAAAGGACAAA AGTCACAGGC chr19:47113369-47113869 + 32 3.65e-06 ATTCGCCGGA GAGCAAGAGGGAAAAA CCGAAAATTG chr19:35717088-35717588 + 33 4.07e-06 CGCTCGGCCC GGGAGAGAGAGGAACG CGTGCTCCGA chr16:234338-234838 + 42 4.07e-06 GAGGACGCAG AGAAGGAGGGGAAAGA GGACGGAGAG chr4:102827358-102827858 - 23 5.02e-06 CGCGGCGGTG AAGAGGCAGGAGGAGG GGGAGGGGCG chr5:112160615-112161115 - 44 5.02e-06 TCGCACCAAA AGGAAGAAAGGACAGG CTTCCGTCCC chr22:23913519-23914019 - 27 5.02e-06 TCGGGTCGGA GGGAGGGAAGGAAATA CTTCCGTGCC chr6:157323344-157323844 + 13 5.56e-06 AGCGAGAACC AGGCGGAGGAGAAAGG TTCCGCTACC chr1:179954681-179955181 - 76 5.56e-06 CGGTCCGCT GGGAAGGAAGACAAGG CGGAAAGGCT chr1:183471815-183472315 + 31 6.15e-06 GAGGCGTGCA AAAAGGAAGAGGGAAA TCGGCAGGAG chr3:129440304-129440804 + 55 8.21e-06 GAGGGTTGGA GAGCGGCAAAGGGAGG TGCCGCGCCT chr19:1442273-1442773 + 24 8.21e-06 aagacaggag gagagaaaatgcaaaa agttggaaaa chr19:35154708-35155208 - 14 9.00e-06 AGCCCAGGAG AGGAGGCAGAGAGATG TGGGCGTGGA chr22:37686180-37686680 + 26 9.00e-06 GGCCGCAACA AGAAGAAGAAGCGAGA TGGTGACGAC chr13:52194231-52194731 - 47 9.00e-06 GTTGCCCACC GGAAAGCAAAGGGAGG GGAACAAGCC chr1:234608191-234608691 - 9 9.00e-06 GGGGGTCTAG GGGAGAAAAGGGGACG GAGAGCAG chr19:58327005-58327505 + 22 9.84e-06 CCGCCCAGCG GGTAGAGAGTGAGAGG CTGACTAGGG chr19:44207464-44207964 - 52 1.08e-05 AGGCTCAGCC GAGAGGAAAGAACACA AACTGCTCCC chr1:167714391-167714891 + 82 1.08e-05 AACACGAGGT GAGAGGCGGAACAAGG CTG chr15:70892164-70892664 - 30 1.08e-05 GGTGACCAGA GGTAGGGAAGGAAACA ATCCCGACCC chr19:38336478-38336978 + 57 1.17e-05 GGGACTGTCA AAGCGAGAAATAGAAA CCAAGACCAG chr17:82037333-82037833 - 80 1.28e-05 AAGGT GGGCGGCGGGGAAAGG TGGGCAAAGG chr19:44094331-44094831 - 60 1.28e-05 CAATGCCCCC GGGAAGCGAGGACAGA CCCAAGCCCA chr16:30378357-30378857 - 52 1.38e-05 GCTGATCCGC GAGAAAGACGAAGAGG TGAGCACGCA chr12:120201292-12020179 - 16 1.50e-05 GCTCCAGCCT GGGCGACAGAGCGACA CTCCGTCTCA chr6:85642860-85643360 - 77 1.50e-05 GGAGCGGG GGGCGGGAATAAGAAA GGCCGAGAGA chr15:101724042-10172454 - 85 1.63e-05 . GAGCGGCAGGAGGAGG ACATCCGCTG chr1:160343318-160343818 - 84 1.63e-05 A ACGAAAAAGAAAGAGG ATTTACAGGG chr1:226790505-226791005 + 58 2.05e-05 actccagcct gggtgacagagcaaga ccctgtctga chr5:149755386-149755886 - 85 2.21e-05 . GGGCAACAAGAACAAA ATTCCATCTC chr19:43798770-43799270 - 79 2.37e-05 GATAGA GGGAGGAGGAAGAACG CTGAGACTGG chr1:244047734-244048234 + 1 2.37e-05 . GGAAGGAGCAGAGAGA GCCACCCGAA chr12:69585371-69585871 - 45 2.37e-05 CGGAGGGCCG GGGAGACAGAAACGGA GCCTACGACC chr21:43728540-43729040 + 39 2.55e-05 CTTGTGTCGC GGGCGGCAGGGGGAAG GGAGTCGGAG chr19:38962006-38962506 - 40 2.55e-05 GCATCATGTC AGTCAGCAAAGGAAGA AGATTTAAAG chr2:223957198-223957698 - 41 2.55e-05 AGAAAACGAT GGAAGACGGAACGAAA GTAGTCGGGC chr5:181218520-181219020 + 81 2.74e-05 actccagcct gggcgacacagcgaga ctcc chr12:49130912-49131412 - 49 2.74e-05 TTTGGAGGGC GGAAAACGAGGCGAGA GGCCAGGGCG chr12:8949986-8950486 - 32 2.94e-05 ACTCAACTGG AAAAAGGAAATACAGA GGAGAGGTGT chr10:17201427-17201927 - 53 2.94e-05 GCGCGATGGA GGGAGGAGGAGCGACG GACCGGCAGG chr19:48588642-48589142 + 60 2.94e-05 tgagcaagtg gggaaaggagtggaga tgaggtccgg chr10:5853476-5853976 + 9 3.15e-05 aggattac aggcAGGAAAACAACA GACCACACCA chr19:17337039-17337539 - 66 3.60e-05 TGACAATAGG AATAAGGAATGGAAGA AAGGACAGAG chr15:100601790-10060229 - 12 3.60e-05 GGCAGGCTCC AGGAAGCGAGTAGAGG GGTGCCTTGT chr12:100200584-10020108 + 21 3.84e-05 CGAGCAGAGG GGTCGGAAAGGGAAAA CAACTACGGC chr17:21042356-21042856 + 3 4.09e-05 aa aggcaacgggggaagg gaagagggca chr6:27214821-27215321 + 32 4.63e-05 actctagact gggcgagagagcagga ctctgtctca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGRVARRRARAGR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161097515-161098015 7e-09 1_[-5]_83 chr5:174327120-174327620 7e-09 19_[-5]_65 chr8:21788557-21789057 7e-09 62_[-5]_22 chr1:155244589-155245089 7e-09 60_[+5]_24 chr1:226711170-226711670 7e-09 36_[+5]_48 chr17:48728653-48729153 7e-09 [-5]_84 chr10:101442020-10144252 7e-09 42_[-5]_42 chr16:50369047-50369547 1.4e-08 5_[-5]_79 chr12:47080555-47081055 2.4e-08 46_[-5]_38 chr1:61692230-61692730 3.9e-08 5_[+5]_79 chr1:234723959-234724459 6e-08 8_[+5]_76 chr15:73738476-73738976 1.1e-07 34_[+5]_50 chr8:100952117-100952617 1.3e-07 72_[-5]_12 chr9:129824300-129824800 1.9e-07 72_[+5]_12 chr12:56158185-56158685 2.3e-07 58_[+5]_26 chr17:7484227-7484727 2.3e-07 59_[-5]_25 chr1:225998873-225999373 4.5e-07 82_[-5]_2 chr12:106357575-10635807 4.5e-07 77_[-5]_7 chr1:70411134-70411634 5.2e-07 49_[-5]_35 chr6:3231621-3232121 6.1e-07 28_[+5]_56 chr19:43682205-43682705 6.1e-07 66_[+5]_18 chr1:109484058-109484558 8.2e-07 84_[-5] chr16:54286341-54286841 8.2e-07 37_[-5]_47 chr10:42782454-42782954 1.1e-06 71_[-5]_13 chr19:42075307-42075807 1.1e-06 13_[-5]_71 chr1:21345686-21346186 1.2e-06 63_[+5]_21 chr22:20495983-20496483 1.6e-06 62_[-5]_22 chr19:34973379-34973879 1.6e-06 83_[-5]_1 chr6:89080570-89081070 1.6e-06 79_[-5]_5 chr5:71455483-71455983 1.6e-06 22_[+5]_62 chr10:117542139-11754263 1.8e-06 22_[+5]_62 chr19:40567067-40567567 1.8e-06 6_[+5]_78 chr20:48921094-48921594 1.8e-06 19_[-5]_65 chr10:46030169-46030669 1.8e-06 33_[+5]_51 chr9:92325141-92325641 2.1e-06 34_[-5]_50 chr1:173825151-173825651 2.1e-06 80_[-5]_4 chr1:50978972-50979472 2.1e-06 75_[+5]_9 chr11:66001985-66002485 2.1e-06 72_[+5]_12 chr19:48645976-48646476 2.6e-06 25_[-5]_59 chr15:71780260-71780760 2.6e-06 76_[+5]_8 chr10:71319314-71319814 2.9e-06 12_[-5]_72 chr17:59209678-59210178 3.3e-06 36_[+5]_48 chr6:113856712-113857212 3.3e-06 73_[+5]_11 chr19:38954718-38955218 3.3e-06 39_[-5]_45 chr7:139340520-139341020 3.3e-06 62_[-5]_22 chr19:47113369-47113869 3.6e-06 31_[+5]_53 chr19:35717088-35717588 4.1e-06 32_[+5]_52 chr16:234338-234838 4.1e-06 41_[+5]_43 chr4:102827358-102827858 5e-06 22_[-5]_62 chr5:112160615-112161115 5e-06 43_[-5]_41 chr22:23913519-23914019 5e-06 26_[-5]_58 chr6:157323344-157323844 5.6e-06 12_[+5]_72 chr1:179954681-179955181 5.6e-06 75_[-5]_9 chr1:183471815-183472315 6.2e-06 30_[+5]_54 chr3:129440304-129440804 8.2e-06 54_[+5]_30 chr19:1442273-1442773 8.2e-06 23_[+5]_61 chr19:35154708-35155208 9e-06 13_[-5]_71 chr22:37686180-37686680 9e-06 25_[+5]_59 chr13:52194231-52194731 9e-06 46_[-5]_38 chr1:234608191-234608691 9e-06 8_[-5]_76 chr19:58327005-58327505 9.8e-06 21_[+5]_63 chr19:44207464-44207964 1.1e-05 51_[-5]_33 chr1:167714391-167714891 1.1e-05 81_[+5]_3 chr15:70892164-70892664 1.1e-05 29_[-5]_55 chr19:38336478-38336978 1.2e-05 56_[+5]_28 chr17:82037333-82037833 1.3e-05 79_[-5]_5 chr19:44094331-44094831 1.3e-05 59_[-5]_25 chr16:30378357-30378857 1.4e-05 51_[-5]_33 chr12:120201292-12020179 1.5e-05 15_[-5]_69 chr6:85642860-85643360 1.5e-05 76_[-5]_8 chr15:101724042-10172454 1.6e-05 84_[-5] chr1:160343318-160343818 1.6e-05 83_[-5]_1 chr1:226790505-226791005 2e-05 57_[+5]_27 chr5:149755386-149755886 2.2e-05 84_[-5] chr19:43798770-43799270 2.4e-05 78_[-5]_6 chr1:244047734-244048234 2.4e-05 [+5]_84 chr12:69585371-69585871 2.4e-05 44_[-5]_40 chr21:43728540-43729040 2.6e-05 38_[+5]_46 chr19:38962006-38962506 2.6e-05 39_[-5]_45 chr2:223957198-223957698 2.6e-05 40_[-5]_44 chr5:181218520-181219020 2.7e-05 80_[+5]_4 chr12:49130912-49131412 2.7e-05 48_[-5]_36 chr12:8949986-8950486 2.9e-05 31_[-5]_53 chr10:17201427-17201927 2.9e-05 52_[-5]_32 chr19:48588642-48589142 2.9e-05 59_[+5]_25 chr10:5853476-5853976 3.1e-05 8_[+5]_76 chr19:17337039-17337539 3.6e-05 65_[-5]_19 chr15:100601790-10060229 3.6e-05 11_[-5]_73 chr12:100200584-10020108 3.8e-05 20_[+5]_64 chr17:21042356-21042856 4.1e-05 2_[+5]_82 chr6:27214821-27215321 4.6e-05 31_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGRVARRRARAGR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRGAGRVARRRARAGR width=16 seqs=91 chr1:161097515-161098015 ( 2) GAGAGAGAGAGAGAGA 1 chr5:174327120-174327620 ( 20) AGGAGGAAGAGAAAGA 1 chr8:21788557-21789057 ( 63) AGGAGAGAGAGAGAGA 1 chr1:155244589-155245089 ( 61) GAGAGAGAGAGAGAGA 1 chr1:226711170-226711670 ( 37) GAGAGAGAGAGAGAGA 1 chr17:48728653-48729153 ( 1) GAGAGAGAGAGAGAGA 1 chr10:101442020-10144252 ( 43) GAGAGAGAGAGAGAGA 1 chr16:50369047-50369547 ( 6) AAGAGAAAGAAAGAGA 1 chr12:47080555-47081055 ( 47) GAGAGGGAGAGAGAGA 1 chr1:61692230-61692730 ( 6) AAGAAAGAAAGAAAGA 1 chr1:234723959-234724459 ( 9) GAGAGAGAGAGAAAAA 1 chr15:73738476-73738976 ( 35) GAAAGAAAGAAAAAGA 1 chr8:100952117-100952617 ( 73) GAGAGGGAGAGAGAGG 1 chr9:129824300-129824800 ( 73) GGGAGACAGAGCAAGA 1 chr12:56158185-56158685 ( 59) GAGAGGCAGGAAGAGA 1 chr17:7484227-7484727 ( 60) AGGAAGAAGAAAAAGG 1 chr1:225998873-225999373 ( 83) AGGAAGGAGAAAGAGG 1 chr12:106357575-10635807 ( 78) AGGAGGAAGAAACAGA 1 chr1:70411134-70411634 ( 50) AGAAGAGAGGAAAAGA 1 chr6:3231621-3232121 ( 29) GGAAAACAAAAAGAGA 1 chr19:43682205-43682705 ( 67) AAAAGAAAAGAAAAGA 1 chr1:109484058-109484558 ( 85) AGGAGAAAGATAAAGG 1 chr16:54286341-54286841 ( 38) GAGAAAGGGAAAGAGA 1 chr10:42782454-42782954 ( 72) AGGCAGAAAAAAGAGA 1 chr19:42075307-42075807 ( 14) AAGAAACAGAGAAAAG 1 chr1:21345686-21346186 ( 64) AAGAGGGAGGAGAAGA 1 chr22:20495983-20496483 ( 63) GAGAGGAGAGAAGAGA 1 chr19:34973379-34973879 ( 84) GGGCGACAGAGGGAGA 1 chr6:89080570-89081070 ( 80) AAGAGAGAAGGAGAAG 1 chr5:71455483-71455983 ( 23) GGGAGAGAGGAGGAGG 1 chr10:117542139-11754263 ( 23) AGGAGGAGGAGGAAGA 1 chr19:40567067-40567567 ( 7) GGGCGACAGAGCAAGA 1 chr20:48921094-48921594 ( 20) AGTAGGAAAGAAAAGA 1 chr10:46030169-46030669 ( 34) GGGAGGGAAGGGAAGG 1 chr9:92325141-92325641 ( 35) AGTAGGAAGGAAGAGA 1 chr1:173825151-173825651 ( 81) GGGAAAAAATGAAAAA 1 chr1:50978972-50979472 ( 76) GGGAGGAAGTAAAAAA 1 chr11:66001985-66002485 ( 73) GGGCAGCAGAGAAAGG 1 chr19:48645976-48646476 ( 26) GAGAGGGAGGGGGAGG 1 chr15:71780260-71780760 ( 77) AAAAGAAAAAAAAAAG 1 chr10:71319314-71319814 ( 13) AGGAGGAGGGGAGAGG 1 chr17:59209678-59210178 ( 37) AGGAGAGGAGAAGAGG 1 chr6:113856712-113857212 ( 74) GAGAGAGAGAGACACA 1 chr19:38954718-38955218 ( 40) GGGCAACAGAGCAAGA 1 chr7:139340520-139341020 ( 63) GGGAAAAAAGGACAAA 1 chr19:47113369-47113869 ( 32) GAGCAAGAGGGAAAAA 1 chr19:35717088-35717588 ( 33) GGGAGAGAGAGGAACG 1 chr16:234338-234838 ( 42) AGAAGGAGGGGAAAGA 1 chr4:102827358-102827858 ( 23) AAGAGGCAGGAGGAGG 1 chr5:112160615-112161115 ( 44) AGGAAGAAAGGACAGG 1 chr22:23913519-23914019 ( 27) GGGAGGGAAGGAAATA 1 chr6:157323344-157323844 ( 13) AGGCGGAGGAGAAAGG 1 chr1:179954681-179955181 ( 76) GGGAAGGAAGACAAGG 1 chr1:183471815-183472315 ( 31) AAAAGGAAGAGGGAAA 1 chr3:129440304-129440804 ( 55) GAGCGGCAAAGGGAGG 1 chr19:1442273-1442773 ( 24) GAGAGAAAATGCAAAA 1 chr19:35154708-35155208 ( 14) AGGAGGCAGAGAGATG 1 chr22:37686180-37686680 ( 26) AGAAGAAGAAGCGAGA 1 chr13:52194231-52194731 ( 47) GGAAAGCAAAGGGAGG 1 chr1:234608191-234608691 ( 9) GGGAGAAAAGGGGACG 1 chr19:58327005-58327505 ( 22) GGTAGAGAGTGAGAGG 1 chr19:44207464-44207964 ( 52) GAGAGGAAAGAACACA 1 chr1:167714391-167714891 ( 82) GAGAGGCGGAACAAGG 1 chr15:70892164-70892664 ( 30) GGTAGGGAAGGAAACA 1 chr19:38336478-38336978 ( 57) AAGCGAGAAATAGAAA 1 chr17:82037333-82037833 ( 80) GGGCGGCGGGGAAAGG 1 chr19:44094331-44094831 ( 60) GGGAAGCGAGGACAGA 1 chr16:30378357-30378857 ( 52) GAGAAAGACGAAGAGG 1 chr12:120201292-12020179 ( 16) GGGCGACAGAGCGACA 1 chr6:85642860-85643360 ( 77) GGGCGGGAATAAGAAA 1 chr15:101724042-10172454 ( 85) GAGCGGCAGGAGGAGG 1 chr1:160343318-160343818 ( 84) ACGAAAAAGAAAGAGG 1 chr1:226790505-226791005 ( 58) GGGTGACAGAGCAAGA 1 chr5:149755386-149755886 ( 85) GGGCAACAAGAACAAA 1 chr19:43798770-43799270 ( 79) GGGAGGAGGAAGAACG 1 chr1:244047734-244048234 ( 1) GGAAGGAGCAGAGAGA 1 chr12:69585371-69585871 ( 45) GGGAGACAGAAACGGA 1 chr21:43728540-43729040 ( 39) GGGCGGCAGGGGGAAG 1 chr19:38962006-38962506 ( 40) AGTCAGCAAAGGAAGA 1 chr2:223957198-223957698 ( 41) GGAAGACGGAACGAAA 1 chr5:181218520-181219020 ( 81) GGGCGACACAGCGAGA 1 chr12:49130912-49131412 ( 49) GGAAAACGAGGCGAGA 1 chr12:8949986-8950486 ( 32) AAAAAGGAAATACAGA 1 chr10:17201427-17201927 ( 53) GGGAGGAGGAGCGACG 1 chr19:48588642-48589142 ( 60) GGGAAAGGAGTGGAGA 1 chr10:5853476-5853976 ( 9) AGGCAGGAAAACAACA 1 chr19:17337039-17337539 ( 66) AATAAGGAATGGAAGA 1 chr15:100601790-10060229 ( 12) AGGAAGCGAGTAGAGG 1 chr12:100200584-10020108 ( 21) GGTCGGAAAGGGAAAA 1 chr17:21042356-21042856 ( 3) AGGCAACGGGGGAAGG 1 chr6:27214821-27215321 ( 32) GGGCGAGAGAGCAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGRVARRRARAGR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.0169 E= 3.5e-068 88 -1315 108 -1315 80 -473 110 -1315 -54 -1315 142 -144 186 -34 -1315 -424 51 -1315 127 -1315 128 -1315 76 -1315 66 3 36 -1315 192 -1315 -48 -1315 84 -314 102 -1315 143 -1315 36 -166 75 -1315 102 -192 156 -82 -41 -1315 100 -156 73 -1315 223 -1315 -373 -1315 -25 -156 127 -324 161 -1315 31 -1315 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGRVARRRARAGR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 91 E= 3.5e-068 0.384615 0.000000 0.615385 0.000000 0.362637 0.010989 0.626374 0.000000 0.142857 0.000000 0.780220 0.076923 0.758242 0.230769 0.000000 0.010989 0.296703 0.000000 0.703297 0.000000 0.505495 0.000000 0.494505 0.000000 0.329670 0.296703 0.373626 0.000000 0.791209 0.000000 0.208791 0.000000 0.373626 0.032967 0.593407 0.000000 0.560440 0.000000 0.373626 0.065934 0.351648 0.000000 0.593407 0.054945 0.615385 0.164835 0.219780 0.000000 0.417582 0.098901 0.483516 0.000000 0.978022 0.000000 0.021978 0.000000 0.175824 0.098901 0.703297 0.021978 0.637363 0.000000 0.362637 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGRVARRRARAGR MEME-5 regular expression -------------------------------------------------------------------------------- [GA][GA]G[AC][GA][AG][GAC][AG][GA][AG][GA][AG][GA]AG[AG] -------------------------------------------------------------------------------- Time 1814.00 secs. ******************************************************************************** ******************************************************************************** MOTIF RACAGAGYGARACYCYGTCTCW MEME-6 width = 22 sites = 18 llr = 354 E-value = 6.5e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif RACAGAGYGARACYCYGTCTCW MEME-6 Description -------------------------------------------------------------------------------- Simplified A 5829171:295a:::12:::16 pos.-specific C 127:::1511::9496::a191 probability G 4:1:728:7:5:::::8::::: matrix T 1::121:5::::1613:a:913 bits 2.3 * * 2.0 * * * * 1.8 * * * *** 1.6 * * * * *** Relative 1.4 * * * ** * *** Entropy 1.1 * * * * ****** ****** (28.4 bits) 0.9 * ************ ****** 0.7 ********************* 0.5 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel AACAGAGCGAAACTCCGTCTCA consensus GC TG TA G C TA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACAGAGYGARACYCYGTCTCW MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:235688752-235689252 + 11 1.34e-13 ccagcctggc aacagagtgagactccgtctca aataataata chr17:7616403-7616903 + 1 6.40e-12 . gacagagcgagactccatctca acaacaacaa chr5:160008628-160009128 + 1 2.83e-11 . gacagactgagactctgtctca aaaataaata chr19:44259443-44259943 - 39 8.30e-11 CAGCCTGGCC AACATGGTGAAACCCCGTCTCT ACTAAAAATA chr19:39033051-39033551 + 35 8.30e-11 cagcctggcc aacatggtgaaaccccgtctct actaaaaata chr10:13298621-13299121 + 78 1.04e-10 ccagcctgac cacagagcaagactccgtctca a chr8:65731762-65732262 - 54 1.43e-10 CAGCCTGGGC GACAGAGTGAAACTCAGTCTAA AATAACAACA chr16:40589-41089 + 52 2.61e-10 accctgggca acaagagcaaaactccatctca aaaataataa chr12:54188168-54188668 + 71 3.47e-10 cagcctgacc aacatggtgaaacccagtctct actaaata chr22:32472788-32473288 + 59 3.82e-10 cagcctgggc gacagagcgcgactccatctca aacaacaaca chr22:29602720-29603220 + 9 5.03e-10 cctgggca acaagagcgaaactccgtcCCa ataataataa chr1:19642506-19643006 + 8 1.28e-09 cagggca acaagagcaaaattctgtctct aataataata chr19:13727312-13727812 + 2 1.50e-09 t gacagtgcgagactctgtctcc aaacaaaCAa chr16:30408586-30409086 - 46 2.04e-09 CAGCTTGGGT GACTGAATGAGACCCTGTCTCA AACAATAACA chr17:75368277-75368777 - 76 5.09e-09 AGT AACAGAGCAAGATCCTATCTTT AAAAAAAAAA chr6:42565310-42565810 - 67 5.09e-09 AGCCTGGGCA TCGAAAGCGAAACTCCGTCTCA AAAACAAAAA chr1:155193878-155194378 + 39 5.44e-09 cagcctggcc aagatggtgaaacctcgtctct actaaaaact chr16:24970657-24971157 - 36 8.48e-09 CAGCCTGGGT GACAGACTCAGACCCTGTCCCA AAAAAACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACAGAGYGARACYCYGTCTCW MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:235688752-235689252 1.3e-13 10_[+6]_68 chr17:7616403-7616903 6.4e-12 [+6]_78 chr5:160008628-160009128 2.8e-11 [+6]_78 chr19:44259443-44259943 8.3e-11 38_[-6]_40 chr19:39033051-39033551 8.3e-11 34_[+6]_44 chr10:13298621-13299121 1e-10 77_[+6]_1 chr8:65731762-65732262 1.4e-10 53_[-6]_25 chr16:40589-41089 2.6e-10 51_[+6]_27 chr12:54188168-54188668 3.5e-10 70_[+6]_8 chr22:32472788-32473288 3.8e-10 58_[+6]_20 chr22:29602720-29603220 5e-10 8_[+6]_70 chr1:19642506-19643006 1.3e-09 7_[+6]_71 chr19:13727312-13727812 1.5e-09 1_[+6]_77 chr16:30408586-30409086 2e-09 45_[-6]_33 chr17:75368277-75368777 5.1e-09 75_[-6]_3 chr6:42565310-42565810 5.1e-09 66_[-6]_12 chr1:155193878-155194378 5.4e-09 38_[+6]_40 chr16:24970657-24971157 8.5e-09 35_[-6]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACAGAGYGARACYCYGTCTCW MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RACAGAGYGARACYCYGTCTCW width=22 seqs=18 chr1:235688752-235689252 ( 11) AACAGAGTGAGACTCCGTCTCA 1 chr17:7616403-7616903 ( 1) GACAGAGCGAGACTCCATCTCA 1 chr5:160008628-160009128 ( 1) GACAGACTGAGACTCTGTCTCA 1 chr19:44259443-44259943 ( 39) AACATGGTGAAACCCCGTCTCT 1 chr19:39033051-39033551 ( 35) AACATGGTGAAACCCCGTCTCT 1 chr10:13298621-13299121 ( 78) CACAGAGCAAGACTCCGTCTCA 1 chr8:65731762-65732262 ( 54) GACAGAGTGAAACTCAGTCTAA 1 chr16:40589-41089 ( 52) ACAAGAGCAAAACTCCATCTCA 1 chr12:54188168-54188668 ( 71) AACATGGTGAAACCCAGTCTCT 1 chr22:32472788-32473288 ( 59) GACAGAGCGCGACTCCATCTCA 1 chr22:29602720-29603220 ( 9) ACAAGAGCGAAACTCCGTCCCA 1 chr1:19642506-19643006 ( 8) ACAAGAGCAAAATTCTGTCTCT 1 chr19:13727312-13727812 ( 2) GACAGTGCGAGACTCTGTCTCC 1 chr16:30408586-30409086 ( 46) GACTGAATGAGACCCTGTCTCA 1 chr17:75368277-75368777 ( 76) AACAGAGCAAGATCCTATCTTT 1 chr6:42565310-42565810 ( 67) TCGAAAGCGAAACTCCGTCTCA 1 chr1:155193878-155194378 ( 39) AAGATGGTGAAACCTCGTCTCT 1 chr16:24970657-24971157 ( 36) GACAGACTCAGACCCTGTCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACAGAGYGARACYCYGTCTCW MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.4965 E= 6.5e-036 126 -239 42 -191 190 -39 -1081 -1081 -32 131 -139 -1081 218 -1081 -1081 -191 -191 -1081 131 9 179 -1081 -39 -191 -191 -139 151 -1081 -1081 78 -1081 126 9 -239 131 -1081 218 -239 -1081 -1081 126 -1081 78 -1081 226 -1081 -1081 -1081 -1081 161 -1081 -91 -1081 42 -1081 155 -1081 169 -1081 -191 -91 93 -1081 68 9 -1081 141 -1081 -1081 -1081 -1081 226 -1081 178 -1081 -1081 -1081 -139 -1081 209 -191 161 -1081 -191 155 -239 -1081 68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACAGAGYGARACYCYGTCTCW MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 18 E= 6.5e-036 0.500000 0.055556 0.388889 0.055556 0.777778 0.222222 0.000000 0.000000 0.166667 0.722222 0.111111 0.000000 0.944444 0.000000 0.000000 0.055556 0.055556 0.000000 0.722222 0.222222 0.722222 0.000000 0.222222 0.055556 0.055556 0.111111 0.833333 0.000000 0.000000 0.500000 0.000000 0.500000 0.222222 0.055556 0.722222 0.000000 0.944444 0.055556 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.388889 0.000000 0.611111 0.000000 0.944444 0.000000 0.055556 0.111111 0.555556 0.000000 0.333333 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.055556 0.888889 0.000000 0.055556 0.611111 0.055556 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACAGAGYGARACYCYGTCTCW MEME-6 regular expression -------------------------------------------------------------------------------- [AG][AC]CA[GT][AG]G[CT][GA]A[AG]AC[TC]C[CT][GA]TCTC[AT] -------------------------------------------------------------------------------- Time 2139.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 width = 43 sites = 7 llr = 310 E-value = 4.1e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 Description -------------------------------------------------------------------------------- Simplified A :::411:::3:::::::9:41::4:a9:1::91:9::1:::17 pos.-specific C :aa1::7:7:::::9:7:9:9a:::::17a9:1919::::::1 probability G a::399:a:7a:aa11:1:6::16::1::::17::::::aa91 matrix T :::1::3:3::a:::93:1:::9:a::91:1::1:1a9a:::: bits 2.3 * ** * * 2.0 * ** * * 1.8 *** * **** * ** * * *** 1.6 *** * **** * * ** **** * * * ***** Relative 1.4 *** ** * **** * ** *** **** *** ********* Entropy 1.1 *** *************** *** **** *** ********* (63.9 bits) 0.9 *** ************************ *** ********** 0.7 *** *************************************** 0.5 *** *************************************** 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGA consensus G T TA T A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr19:16292326-16292826 - 3 1.22e-25 GGCCAGCTTG GCCAGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGA GG chr17:7616403-7616903 + 54 4.22e-24 aataaTAGTg gcccggcgcggtggctcacgcctgtaatcccagcactttggga ggcc chr7:139339920-139340420 - 19 4.40e-21 ATTTCCGCAG GCCGGGCGTGGTGGCGCACGCCTGTAATACCAGTACTTTGGGA GGCCGAGGCG chr17:75368277-75368777 - 2 3.27e-20 AAAAACAAAC GCCTGACGCAGTGGGTCACGCCTATAATCCCAGCACTTTGGAG G chr6:27603518-27604018 - 32 4.96e-20 ATAATAATAG GCCGGGCGCGGTGGCTCACGCCTGTAGTCCCGCCCCTTTGGGA GGCCTAGACG chr1:26329828-26330328 - 4 3.46e-19 CTAGAATGAA GCCAAGTGCAGTGGCTTGTACCTATAATTCTAGCACTTTGGGC CGG chr1:36255917-36256417 - 21 4.82e-19 ATCCAGGCAG GCCAGGTGTGGTGGCTTACAACGATAACCCCAACATTATGGGA GGCTGAGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:16292326-16292826 1.2e-25 2_[-7]_55 chr17:7616403-7616903 4.2e-24 53_[+7]_4 chr7:139339920-139340420 4.4e-21 18_[-7]_39 chr17:75368277-75368777 3.3e-20 1_[-7]_56 chr6:27603518-27604018 5e-20 31_[-7]_26 chr1:26329828-26330328 3.5e-19 3_[-7]_54 chr1:36255917-36256417 4.8e-19 20_[-7]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA width=43 seqs=7 chr19:16292326-16292826 ( 3) GCCAGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGA 1 chr17:7616403-7616903 ( 54) GCCCGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGA 1 chr7:139339920-139340420 ( 19) GCCGGGCGTGGTGGCGCACGCCTGTAATACCAGTACTTTGGGA 1 chr17:75368277-75368777 ( 2) GCCTGACGCAGTGGGTCACGCCTATAATCCCAGCACTTTGGAG 1 chr6:27603518-27604018 ( 32) GCCGGGCGCGGTGGCTCACGCCTGTAGTCCCGCCCCTTTGGGA 1 chr1:26329828-26330328 ( 4) GCCAAGTGCAGTGGCTTGTACCTATAATTCTAGCACTTTGGGC 1 chr1:36255917-36256417 ( 21) GCCAGGTGTGGTGGCTTACAACGATAACCCCAACATTATGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 12.885 E= 4.1e-034 -945 -945 178 -945 -945 178 -945 -945 -945 178 -945 -945 104 -103 -3 -54 -54 -945 155 -945 -54 -945 155 -945 -945 129 -945 45 -945 -945 178 -945 -945 129 -945 45 45 -945 129 -945 -945 -945 178 -945 -945 -945 -945 226 -945 -945 178 -945 -945 -945 178 -945 -945 155 -103 -945 -945 -945 -103 204 -945 129 -945 45 204 -945 -103 -945 -945 155 -945 -54 104 -945 97 -945 -54 155 -945 -945 -945 178 -945 -945 -945 -945 -103 204 104 -945 97 -945 -945 -945 -945 226 226 -945 -945 -945 204 -945 -103 -945 -945 -103 -945 204 -54 129 -945 -54 -945 178 -945 -945 -945 155 -945 -54 204 -945 -103 -945 -54 -103 129 -945 -945 155 -945 -54 204 -103 -945 -945 -945 155 -945 -54 -945 -945 -945 226 -54 -945 -945 204 -945 -945 -945 226 -945 -945 178 -945 -945 -945 178 -945 -54 -945 155 -945 178 -103 -103 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 7 E= 4.1e-034 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.142857 0.285714 0.142857 0.142857 0.000000 0.857143 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.714286 0.000000 0.285714 0.857143 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.142857 0.428571 0.000000 0.571429 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.142857 0.000000 0.857143 0.142857 0.714286 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.857143 0.000000 0.142857 0.000000 0.142857 0.142857 0.714286 0.000000 0.000000 0.857143 0.000000 0.142857 0.857143 0.142857 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.714286 0.142857 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGGCGCGGTGGCTCACRCCTRTAATCCCAGCACTTTGGGA MEME-7 regular expression -------------------------------------------------------------------------------- GCC[AG]GG[CT]G[CT][GA]GTGGCT[CT]AC[GA]CCT[GA]TAATCCCAGCACTTTGGGA -------------------------------------------------------------------------------- Time 2464.17 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCCSCBVCCKCCKCYSCCBCC MEME-8 width = 22 sites = 128 llr = 1155 E-value = 7.1e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCCSCBVCCKCCKCYSCCBCC MEME-8 Description -------------------------------------------------------------------------------- Simplified A :::1::131::::::1::1::1 pos.-specific C 55775644681a8:86495377 probability G 22215233215::5115:3321 matrix T 2311122:113:25131124:1 bits 2.3 2.0 1.8 1.6 * Relative 1.4 * * Entropy 1.1 * * (13.0 bits) 0.9 **** * * 0.7 * * **** * * 0.5 * **** ********* ** 0.2 ****** *************** 0.0 ---------------------- Multilevel CCCCCCCCCCGCCTCCGCCTCC consensus GTG GGGA T TG TC GCG sequence TG TG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCSCBVCCKCCKCYSCCBCC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:40691643-40692143 - 64 2.78e-08 GAAGCGCTGC CCCTCCCCCCGCCGCCGCTTCC CTATCACCCT chr1:244653067-244653567 - 19 3.43e-08 CCATCCTCCT CCCCGCGGCCGCCGCCTCGTCC TCAAGCCGCT chr21:32278552-32279052 + 32 5.14e-08 GCGGCCTCTC CTCCGCAGCCGCCGCCTCCTCC TCCAGCTGCG chr13:40770945-40771445 + 54 7.59e-08 CCAAACACGT CCCCGCCCTCTCTTCCGCTTCC GGCCTGGCGC chr20:37177999-37178499 - 1 1.33e-07 CTCAAGCAAT CTTCCCTCCCGCCTCAGCCTCC chr17:82037333-82037833 + 42 1.59e-07 AGTGAAGGCG TCCCCTGCCCGCCTCTGCCCGC CGCCGGCCTT chr13:52194231-52194731 + 10 2.67e-07 AAACACATC CCCCGCGCTCTCCTCCGTTTCC GGTCTGGCTT chr5:112976818-112977318 + 74 4.37e-07 TGTCCTCGCT TTCCGCTCCCGCCGCTGCTCGC TTTCC chr12:120533965-12053446 - 23 1.27e-06 TTTTTATTTC CTCCCCCACCTCCGCCCCAACC CCACTGTGAG chr19:38336478-38336978 - 14 1.47e-06 CTCTTAAGTT CCCCCGTACTGCTTCTGCCTGC GATCGCACCC chr19:10194680-10195180 - 35 1.47e-06 GCCGGGGCGC CTGCGCTGCCGCCGCCGCGTCT GCTGAAGCCT chr10:117542139-11754263 - 69 1.69e-06 GCTTCTCCTC CTCCTTCGCCTCCTCCTCTTCC TCCAGTTTCT chr1:27321960-27322460 + 72 1.69e-06 CTGCTCTTGT TGCCGCCGCCGCCACCCCCGCC CAGGATG chr6:157323344-157323844 + 29 1.69e-06 AGGAGAAAGG TTCCGCTACCGCCTCCTCCTGT GCAATCTGAA chr17:38606133-38606633 - 9 1.94e-06 GCCCCCAGTC TCGCCGCCCCGCCTCCCCACCC AGCCCCGA chr1:1959890-1960390 + 27 1.94e-06 TCAGGCTGGG CCTCCTGGCCTCCTCCCCATCC CGGGCCTGGC chr1:160343318-160343818 + 20 1.94e-06 GGATCGGCCC CGCCGCGACCGCCACTGTCTCC CTTCTGGTTC chr6:79078056-79078556 + 1 2.23e-06 . GGCCGTGGCCGCCTCCGCCGCG GATCCCTCCG chr16:234338-234838 - 58 2.23e-06 CGTCCCCCCT CCGTCCTCGCTCCTCTCCGTCC TCTTTCCCCT chr12:106357575-10635807 - 50 2.23e-06 CAGATAGAAC CTCCGCGCCCGCCTTCCCTGCA CCAAGCAAAC chr6:143450470-143450970 - 19 2.91e-06 CCGCGTTCCG CTGCCCGCGCTCCTCCTCTGCC GCGGGCTCTG chr7:99616303-99616803 + 76 2.91e-06 GATCCAGTGC GCCCCCTATCTCCTCTGCCCCT ACG chr12:47080555-47081055 + 24 3.78e-06 tttctctctt ctccttcccctcttctctctcc ctctctctct chr15:69452736-69453236 + 6 3.78e-06 CTCGC CCGCGCCATGGCCTCTGTCTCC GAGCTCGCCT chr19:10654196-10654696 - 49 3.78e-06 CCCCTTCTTC GACCGCAGCCGCCGCCGCCGCC CTCCTGCCAC chr19:37077822-37078322 + 53 4.30e-06 GTCCCCGCAC CGGCCCCAGCTCCTCCCCCGCA CCTGCCTGGC chr14:91060245-91060745 + 57 4.30e-06 ACGCCCGTCC CCTCGCAGCCGCTGCCGCGGCC CCAGGAGTCG chr8:11016165-11016665 - 48 4.30e-06 GCCCCCAGAC CTGCGCTACTCCCGCTGCGTCC GGTGGCACTA chr8:11802689-11803189 - 70 4.30e-06 TGAGGCCGG CCCAGCGAGCTCCTTCCCCGCC CCGGGCAAGC chr19:35154708-35155208 + 64 4.87e-06 TGCCTCGCTC CCGCCCGCCTGCCTCAGTCTCC CCAGCTCTCT chr6:85642860-85643360 + 8 4.87e-06 ccctgcc ctcctccagctcctccttctcc ccctaccacc chr7:102572306-102572806 + 15 5.52e-06 GGGGCGTTCA TGCTCCCGCCGCCGTTGCGTCC AGACCCCAAG chr19:34134454-34134954 + 58 5.52e-06 CCGGCCCCTG CCCCGGACCCTCCTGCGCGCCC CTCCGGCTGC chr21:25607268-25607768 + 39 5.52e-06 GCGCAAGTCC TTCTCCGCCCTCCTCCCCCGGA AACCGAACGC chr8:94474627-94475127 + 54 5.52e-06 CCACTTCGGT CGCTcctgccgccttccctccc tcctccctcG chr6:42890474-42890974 - 67 6.24e-06 GTCCCCAATG CTCGGCCCCGGCCTCTGCCTCA GCTTCGGTTA chr6:4018174-4018674 - 10 6.24e-06 ATCTGCCTCG GGGCCCTGTCGCCGCCGCGCCC CGGATCCTG chr1:148402448-148402948 - 28 6.24e-06 AGCTCACACC CCTCCGCCCCGCCGCAGCCTCA TATTCCTCAC chr17:7234309-7234809 + 46 7.05e-06 TAAAGGCAGC CACCCCGCGCTCCTCAGCCGCC CTCCGTCACG chr16:31179987-31180487 - 54 7.05e-06 CCTCGGCCGG GTGCGCCGCCGCCGTCGCCTCG CGCCCTTACC chr1:228140151-228140651 - 51 7.05e-06 GACCGCAAAG CGCAGGGACCGCTGCCGCCTCG ACCCGAGTCA chr1:63523036-63523536 - 72 7.94e-06 TAGAACT CCCCGCTCGCTCCTTTGCTCGC GCACACCCGG chr12:70242753-70243253 - 5 7.94e-06 GACACCCCCG CCCCCGCACGTCCGCCTCGTCA CTCC chr12:123601768-12360226 + 5 8.93e-06 ACCG TCCCGCGGACGCCTTTCCTCCC TCCCGCGGCG chr1:1307957-1308457 - 30 8.93e-06 GCGGGCGGGC CCGCGCCCTCCCCGCGCCCTCC CCGCGCCCCA chr11:47578724-47579224 + 34 1.13e-05 TCATCCCGGA GCCCGGAACCTCCGCTTCCGGC TCCACGTCCG chr1:163321572-163322072 + 65 1.26e-05 GCAATGGTTC CGCCCTGCGCCCTGCCCCTTCC ATGACAACTC chr4:102827358-102827858 + 54 1.26e-05 CCGCGGATCA GTCCGCCAACGCCGCCGTCCCG AGCACAAGAC chr19:43798770-43799270 + 49 1.41e-05 CGTGCTCTGC TTCCCGAAACCCTTCTCCCTCC AGTCTCAGCG chr1:156456741-156457241 - 68 1.41e-05 CTACGCAGCA GTCCCCTCACCCCTCTCCCCCG GCGTCCTCCC chr21:39183016-39183516 + 27 1.41e-05 CCTTATCCCG GTGCCTCACCTCTTCCGCGCCA GCTGCAGACG chr5:177086896-177087396 - 34 1.41e-05 GGAGGGGCAG TCCCCGTAGCCCCGCCGCCTCT CGCCCCCTGG chr19:58305326-58305826 - 55 1.58e-05 CGCGCCCTCA CGCACCGCGCGCCTCTCTGCCC GCGCCGACCC chr1:226308702-226309202 - 45 1.58e-05 AGTCCTCCCA CTCCGGTGTTGCCGCCGCGTCG CCGCCTTTGT chr6:83192826-83193326 + 8 1.58e-05 AGGTGTG TCCCGCGCGCTCCGCCGCTCGG TCAGTCGCCC chr19:37655818-37656318 + 72 1.76e-05 GTGGTGTTTG CTGAGTGACGGCCGCCGCGCCC CCGCGTA chr21:39313556-39314056 - 67 1.76e-05 CGCCCTCCCC TCCCCCACTCGCTGCTGCGGCG CCCAGGTCTT chr8:94719594-94720094 - 60 1.76e-05 CACTTCCTGA CCCACCCCCCTCCGGTGTCGCC GCCAACCGCG chr1:229342693-229343193 + 18 1.76e-05 GGCTGCCTTA CCTCCTTCCCGCCGCGCCCGGC CGATCCTCTG chr16:30021286-30021786 - 15 1.76e-05 TCCACGCGTC CTTCGCAGACTCCGCTCCCTGC ACCTCCGTTT chr15:70097459-70097959 + 69 1.76e-05 CCTTCCCCTC GGCCCGGCTCTCCTCTCCGCGC CCCGGCAAAC chr12:12266976-12267476 + 76 1.96e-05 CGGGATTCTT TCCCGGACCGGCCGCTTCGGCC CTC chr21:46324080-46324580 + 58 1.96e-05 TAAGGGCGGC TCCGGTGCCCGCCACCGCCCCC TGCCAGGAGA chr6:24774894-24775394 - 27 2.18e-05 CCCCTGCGTA CCCACTTCCTGCCGCCTCTTGC CCACTTACTG chr4:4541838-4542338 + 16 2.18e-05 GGACTGGTCC TGCCCCACACGCCTCCCCCCGG CAACGGCGAC chr1:223846047-223846547 + 22 2.18e-05 CCAGGGCTGC CGCCGTCACCTCCTCGGCGGCT CCGAGTCGTG chr19:39390606-39391106 - 67 2.18e-05 CCCGCTAGGA CCCCGTCCGGGCTGCCGTCGCC TCGTCGCTAT chr19:40662801-40663301 - 77 2.42e-05 TG CTCCCTGGGGCCCGCTGCTTCC ACTGCCCTGC chr1:52365724-52366224 + 67 2.68e-05 acgcgccgcc ctgccccgcccgcgccgcCTCC ATCTACCCCC chr19:48169880-48170380 + 3 2.68e-05 CG CAGCCCGCGCTCTTCCGTCTCC ACCGCGCTCT chr19:35717088-35717588 + 70 2.68e-05 CCTGCTTTCG GCCACCCGCCTCCTCTCCGGGA GCACACGGA chr16:21599280-21599780 - 32 2.68e-05 TTCCCTTCCG GCCGCGGAACGCCGCTGCCCCC TGCACCAGTT chr1:146387203-146387703 - 18 2.97e-05 TAAATAAGAT TGCACCTATCTCCGCCCCGCCA CAGCTCCATA chr1:167455188-167455688 + 75 2.97e-05 GGGAAGGAAC CTCCGGCCCTTCCTCACCATGC AGCC chr19:39397576-39398076 - 53 2.97e-05 GGCCTGCGAG CTCCCTGTTGGCCTCTGCTGCC CCCTGCTGGC chr19:41310147-41310647 - 22 3.29e-05 CGCAACCGCA CCCACCCGCCGCCTGCGCGTGA CCAAGATCTC chr19:58278888-58279388 - 2 3.29e-05 CAGACATCAC TCCCGCTACCCCTTCGTCCTCG G chr17:4731337-4731837 - 65 3.29e-05 TGCCAGTGCA GCCCGGTCACGCTTTCGCTCCC CGCTGTCCAG chr2:96638171-96638671 - 31 3.29e-05 TCCGGGCTTT GCCGCTCACCGCCTCTCCCTTC CCAGGCCGTA chr20:52972214-52972714 - 65 3.63e-05 CACTCACACG CGCACGCACCCCCGCTTCCTCG CACACACACA chr15:72118340-72118840 + 78 3.63e-05 CACGCACGCT CTCTCCACCCACTGCCCCCTCC A chr12:54188168-54188668 - 19 4.01e-05 CCTGACCTCG TGATCCGCCCGCCTCGGCCTCC CAAAGTGCTC chr19:40634446-40634946 + 7 4.01e-05 GCAGCG CCCCCCGATGGCCACCGCGCGC CGGCGCAGCC chr1:224615759-224616259 - 6 4.01e-05 TGTGTGCCTC GCGCCTAAACGCCGCAGCCGCC CCTCC chr12:26832742-26833242 - 12 4.01e-05 TGCGGCTTGG CCCCGGTCTGGCTTCCCCGGCG CGCACGCACG chr12:103965827-10396632 + 41 4.01e-05 CAGGTAATAC CGGGGCCAGCGCCGCCCCTCCC TTGCGCCCCT chr5:38556669-38557169 - 29 4.01e-05 GGCTCGGCCG CCTCGCTCTCCCCTGCGCTTCC ATGACCTTCT chr1:184386455-184386955 - 26 4.42e-05 GGAAGACTGC GTCCCGTCCGGCCTTCCCGGGC CTGTCACTTG chr8:123396269-123396769 + 26 4.42e-05 CGCCCAGAAT CCCTCCGCCGTCTGTCCCGCCC ACGCCACCAC chr19:34404369-34404869 - 13 4.86e-05 CCCCCAGGAC CTCGCCCACTCCCTCCGCACCC TTCAGCAGCA chr17:2303419-2303919 + 5 4.86e-05 CGGC GCGACTCACCTCTGCTCCCGGC CTGCGGGGCC chr21:37366796-37367296 + 34 5.35e-05 ctgctgctgt tggtgccgctgccgccgcCGGC GAGCAGGCGG chr12:57782457-57782957 + 67 5.35e-05 CGCTGGAGAA TTCTGGCCCTTCCGCCGCGCCG TAGGTTTGTT chr18:50281046-50281546 + 23 5.35e-05 TCGGCCTGAG GGCCCTTCATTCCTCCCCGTCA GCGTTCTGAG chr11:57741090-57741590 + 27 5.87e-05 TGTTCACCAT CCCAGCGTCCCCTGTCCCCTCC ACCCGAAGCG chr21:44939671-44940171 - 77 6.44e-05 GC TGCCGGGAGCCCCGCGGCCGCC GGAAGTACCC chr2:148020343-148020843 + 10 6.44e-05 CGATTCACC TTGCGCCACCGACGCCCCTGGC CTTCGTTTGC chr7:47979306-47979806 - 20 6.44e-05 ACCCACAGAG GCCCGCCGCGGCTGCGCCATCC GCGGCCATGA chr12:96906852-96907352 + 5 6.44e-05 GGCC GCCCCGGCCCGCAGTTCCCGCC CTGACACTGG chr5:139341763-139342263 - 78 7.06e-05 C TTTAGGCCCCTCTGCCGTCGCC GACTTGCTGT chr1:160262013-160262513 - 29 7.06e-05 CTGTGTCTCG TTCCGGCTCGGCCTGCGCCCCC CCTCGCTTCC chr22:38681739-38682239 + 45 7.06e-05 CAGTCATGGC TGCCGCCGTCGCTGCTGCCGGT GCAGGGGAAC chr1:40257864-40258364 - 64 7.06e-05 ACGCCGATAC CCGCCCCCATCCCTCCCTCTGC GCGCTGCTGG chr2:241102092-241102592 + 55 7.06e-05 CCGGCCCCCG GTCCGTCACCGACGCCGTTCCC AGCGCCAGCG chr1:28581593-28582093 - 3 7.06e-05 CTCTGCCTGC CTTCCTGCGCGCCGTTCCCCGC TA chr19:18571708-18572208 - 55 7.06e-05 TGAGCCAGCT CAGGGCCGCCTCTTCTGCCGCC CAGGCCCCTG chr15:72117583-72118083 + 61 7.06e-05 TCCGGGCGAG CGGCCGCGGCGCATCCCCCGCC CTGTCAGAGA chr12:112382395-11238289 + 35 7.73e-05 GGGAAGAGGA CGCCGCTTCCCCCGTCCTGTCC CTACTCAGGT chr10:122953918-12295441 - 15 7.73e-05 CGAGGACGGG GGCCTCACCCGCCGCCCCACGC TGGCCTCTTC chr19:39532428-39532928 + 57 9.23e-05 TGCACCCGAA CCCCGCCGCCGACTGCCCCCCG CAGTACGTCG chr19:12806533-12807033 - 36 9.23e-05 CCAGCACGGG GCCCCTGCCCGCCTCATCGACG CCCAGGACGC chr8:43093769-43094269 - 2 9.23e-05 CCGGGTTCAA GCATTCTCCCGCCTCAGCCTCC G chr1:230642429-230642929 + 52 1.01e-04 TCATGAAGGT GCGCGCGGCGTCCGCTCCCCGG AGCCGGGCCA chr6:33299565-33300065 + 21 1.01e-04 GATCCCTGAG CTGCGCCGCCGCTTCCTTCGTC AAcatccagc chr1:25247056-25247556 + 57 1.01e-04 ACTTACCGCA CGCCGTCGACGCCTCCCTCACG ACTGAGAGAA chr7:92590094-92590594 + 74 1.01e-04 CTGCCGCAGG TCCTCTTGCCGCCTCCCCACTC CGCCT chr14:24213061-24213561 - 54 1.10e-04 CGGCGAGATT CGGCCGGACCGCTGCGCCGGGC AGGGGAAGAG chr1:25998122-25998622 + 58 1.20e-04 AGTCCCGTGC GTAACCCTCCGCCTCACCCTCC TCAAATAGTC chr12:56041881-56042381 + 57 1.20e-04 GCCAGGCACC GTCTCCTCTCTCCGGTCCGTGC CTCCAAGATG chr19:49850650-49851150 + 77 1.20e-04 CAGCTTGGTG TCGCCTTCGTTCTTCTGCCACC CC chr15:75023447-75023947 - 12 1.20e-04 CCCCGAACCT CCCCTCCCGCGCCGCCGCGAGA ACCCAGCTTC chr3:134795177-134795677 + 57 1.41e-04 cacacccaca cccacgcgcgcccgcaccgccc cacgcgcaca chr7:114085831-114086331 + 77 1.53e-04 CTTCAGAATC CTCTGCGGCGTCCTGTCCCCCA CC chr17:61927506-61928006 - 6 1.80e-04 ATCGGACCGC GCTCTCGATTTCTGCCGCGTCC CGCCT chr5:40835085-40835585 - 47 1.95e-04 GATCGGCCCT GCCTGGTACCGCATCCTCCTCT TGACCCCACC chr3:49940094-49940594 + 46 2.11e-04 GGCTTCAGTG TCGCGGGGCGGCTGCGGCCTCG CTCGGGAAGA chr14:64986653-64987153 + 11 2.28e-04 CTCTATCCGC TCGCCGTAGCGCTTTAGCCCGC TCGAGTTTCA chr16:25258062-25258562 - 38 5.02e-04 AAAAACACCA CGCCGCGCCGTGCACCTCCGCC AGAGGAAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCSCBVCCKCCKCYSCCBCC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:40691643-40692143 2.8e-08 63_[-8]_15 chr1:244653067-244653567 3.4e-08 18_[-8]_60 chr21:32278552-32279052 5.1e-08 31_[+8]_47 chr13:40770945-40771445 7.6e-08 53_[+8]_25 chr20:37177999-37178499 1.3e-07 [-8]_78 chr17:82037333-82037833 1.6e-07 41_[+8]_37 chr13:52194231-52194731 2.7e-07 9_[+8]_69 chr5:112976818-112977318 4.4e-07 73_[+8]_5 chr12:120533965-12053446 1.3e-06 22_[-8]_56 chr19:38336478-38336978 1.5e-06 13_[-8]_65 chr19:10194680-10195180 1.5e-06 34_[-8]_44 chr10:117542139-11754263 1.7e-06 68_[-8]_10 chr1:27321960-27322460 1.7e-06 71_[+8]_7 chr6:157323344-157323844 1.7e-06 28_[+8]_50 chr17:38606133-38606633 1.9e-06 8_[-8]_70 chr1:1959890-1960390 1.9e-06 26_[+8]_52 chr1:160343318-160343818 1.9e-06 19_[+8]_59 chr6:79078056-79078556 2.2e-06 [+8]_78 chr16:234338-234838 2.2e-06 57_[-8]_21 chr12:106357575-10635807 2.2e-06 49_[-8]_29 chr6:143450470-143450970 2.9e-06 18_[-8]_60 chr7:99616303-99616803 2.9e-06 75_[+8]_3 chr12:47080555-47081055 3.8e-06 23_[+8]_55 chr15:69452736-69453236 3.8e-06 5_[+8]_73 chr19:10654196-10654696 3.8e-06 48_[-8]_30 chr19:37077822-37078322 4.3e-06 52_[+8]_26 chr14:91060245-91060745 4.3e-06 56_[+8]_22 chr8:11016165-11016665 4.3e-06 47_[-8]_31 chr8:11802689-11803189 4.3e-06 69_[-8]_9 chr19:35154708-35155208 4.9e-06 63_[+8]_15 chr6:85642860-85643360 4.9e-06 7_[+8]_71 chr7:102572306-102572806 5.5e-06 14_[+8]_64 chr19:34134454-34134954 5.5e-06 57_[+8]_21 chr21:25607268-25607768 5.5e-06 38_[+8]_40 chr8:94474627-94475127 5.5e-06 53_[+8]_25 chr6:42890474-42890974 6.2e-06 66_[-8]_12 chr6:4018174-4018674 6.2e-06 9_[-8]_69 chr1:148402448-148402948 6.2e-06 27_[-8]_51 chr17:7234309-7234809 7e-06 45_[+8]_33 chr16:31179987-31180487 7e-06 53_[-8]_25 chr1:228140151-228140651 7e-06 50_[-8]_28 chr1:63523036-63523536 7.9e-06 71_[-8]_7 chr12:70242753-70243253 7.9e-06 4_[-8]_74 chr12:123601768-12360226 8.9e-06 4_[+8]_74 chr1:1307957-1308457 8.9e-06 29_[-8]_49 chr11:47578724-47579224 1.1e-05 33_[+8]_45 chr1:163321572-163322072 1.3e-05 64_[+8]_14 chr4:102827358-102827858 1.3e-05 53_[+8]_25 chr19:43798770-43799270 1.4e-05 48_[+8]_30 chr1:156456741-156457241 1.4e-05 67_[-8]_11 chr21:39183016-39183516 1.4e-05 26_[+8]_52 chr5:177086896-177087396 1.4e-05 33_[-8]_45 chr19:58305326-58305826 1.6e-05 54_[-8]_24 chr1:226308702-226309202 1.6e-05 44_[-8]_34 chr6:83192826-83193326 1.6e-05 7_[+8]_71 chr19:37655818-37656318 1.8e-05 71_[+8]_7 chr21:39313556-39314056 1.8e-05 66_[-8]_12 chr8:94719594-94720094 1.8e-05 59_[-8]_19 chr1:229342693-229343193 1.8e-05 17_[+8]_61 chr16:30021286-30021786 1.8e-05 14_[-8]_64 chr15:70097459-70097959 1.8e-05 68_[+8]_10 chr12:12266976-12267476 2e-05 75_[+8]_3 chr21:46324080-46324580 2e-05 57_[+8]_21 chr6:24774894-24775394 2.2e-05 26_[-8]_52 chr4:4541838-4542338 2.2e-05 15_[+8]_63 chr1:223846047-223846547 2.2e-05 21_[+8]_57 chr19:39390606-39391106 2.2e-05 66_[-8]_12 chr19:40662801-40663301 2.4e-05 76_[-8]_2 chr1:52365724-52366224 2.7e-05 66_[+8]_12 chr19:48169880-48170380 2.7e-05 2_[+8]_76 chr19:35717088-35717588 2.7e-05 69_[+8]_9 chr16:21599280-21599780 2.7e-05 31_[-8]_47 chr1:146387203-146387703 3e-05 17_[-8]_61 chr1:167455188-167455688 3e-05 74_[+8]_4 chr19:39397576-39398076 3e-05 52_[-8]_26 chr19:41310147-41310647 3.3e-05 21_[-8]_57 chr19:58278888-58279388 3.3e-05 1_[-8]_77 chr17:4731337-4731837 3.3e-05 64_[-8]_14 chr2:96638171-96638671 3.3e-05 30_[-8]_48 chr20:52972214-52972714 3.6e-05 64_[-8]_14 chr15:72118340-72118840 3.6e-05 77_[+8]_1 chr12:54188168-54188668 4e-05 18_[-8]_60 chr19:40634446-40634946 4e-05 6_[+8]_72 chr1:224615759-224616259 4e-05 5_[-8]_73 chr12:26832742-26833242 4e-05 11_[-8]_67 chr12:103965827-10396632 4e-05 40_[+8]_38 chr5:38556669-38557169 4e-05 28_[-8]_50 chr1:184386455-184386955 4.4e-05 25_[-8]_53 chr8:123396269-123396769 4.4e-05 25_[+8]_53 chr19:34404369-34404869 4.9e-05 12_[-8]_66 chr17:2303419-2303919 4.9e-05 4_[+8]_74 chr21:37366796-37367296 5.3e-05 33_[+8]_45 chr12:57782457-57782957 5.3e-05 66_[+8]_12 chr18:50281046-50281546 5.3e-05 22_[+8]_56 chr11:57741090-57741590 5.9e-05 26_[+8]_52 chr21:44939671-44940171 6.4e-05 76_[-8]_2 chr2:148020343-148020843 6.4e-05 9_[+8]_69 chr7:47979306-47979806 6.4e-05 19_[-8]_59 chr12:96906852-96907352 6.4e-05 4_[+8]_74 chr5:139341763-139342263 7.1e-05 77_[-8]_1 chr1:160262013-160262513 7.1e-05 28_[-8]_50 chr22:38681739-38682239 7.1e-05 44_[+8]_34 chr1:40257864-40258364 7.1e-05 63_[-8]_15 chr2:241102092-241102592 7.1e-05 54_[+8]_24 chr1:28581593-28582093 7.1e-05 2_[-8]_76 chr19:18571708-18572208 7.1e-05 54_[-8]_24 chr15:72117583-72118083 7.1e-05 60_[+8]_18 chr12:112382395-11238289 7.7e-05 34_[+8]_44 chr10:122953918-12295441 7.7e-05 14_[-8]_64 chr19:39532428-39532928 9.2e-05 56_[+8]_22 chr19:12806533-12807033 9.2e-05 35_[-8]_43 chr8:43093769-43094269 9.2e-05 1_[-8]_77 chr1:230642429-230642929 0.0001 51_[+8]_27 chr6:33299565-33300065 0.0001 20_[+8]_58 chr1:25247056-25247556 0.0001 56_[+8]_22 chr7:92590094-92590594 0.0001 73_[+8]_5 chr14:24213061-24213561 0.00011 53_[-8]_25 chr1:25998122-25998622 0.00012 57_[+8]_21 chr12:56041881-56042381 0.00012 56_[+8]_22 chr19:49850650-49851150 0.00012 76_[+8]_2 chr15:75023447-75023947 0.00012 11_[-8]_67 chr3:134795177-134795677 0.00014 56_[+8]_22 chr7:114085831-114086331 0.00015 76_[+8]_2 chr17:61927506-61928006 0.00018 5_[-8]_73 chr5:40835085-40835585 0.00019 46_[-8]_32 chr3:49940094-49940594 0.00021 45_[+8]_33 chr14:64986653-64987153 0.00023 10_[+8]_68 chr16:25258062-25258562 0.0005 37_[-8]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCSCBVCCKCCKCYSCCBCC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCCSCBVCCKCCKCYSCCBCC width=22 seqs=128 chr1:40691643-40692143 ( 64) CCCTCCCCCCGCCGCCGCTTCC 1 chr1:244653067-244653567 ( 19) CCCCGCGGCCGCCGCCTCGTCC 1 chr21:32278552-32279052 ( 32) CTCCGCAGCCGCCGCCTCCTCC 1 chr13:40770945-40771445 ( 54) CCCCGCCCTCTCTTCCGCTTCC 1 chr20:37177999-37178499 ( 1) CTTCCCTCCCGCCTCAGCCTCC 1 chr17:82037333-82037833 ( 42) TCCCCTGCCCGCCTCTGCCCGC 1 chr13:52194231-52194731 ( 10) CCCCGCGCTCTCCTCCGTTTCC 1 chr5:112976818-112977318 ( 74) TTCCGCTCCCGCCGCTGCTCGC 1 chr12:120533965-12053446 ( 23) CTCCCCCACCTCCGCCCCAACC 1 chr19:38336478-38336978 ( 14) CCCCCGTACTGCTTCTGCCTGC 1 chr19:10194680-10195180 ( 35) CTGCGCTGCCGCCGCCGCGTCT 1 chr10:117542139-11754263 ( 69) CTCCTTCGCCTCCTCCTCTTCC 1 chr1:27321960-27322460 ( 72) TGCCGCCGCCGCCACCCCCGCC 1 chr6:157323344-157323844 ( 29) TTCCGCTACCGCCTCCTCCTGT 1 chr17:38606133-38606633 ( 9) TCGCCGCCCCGCCTCCCCACCC 1 chr1:1959890-1960390 ( 27) CCTCCTGGCCTCCTCCCCATCC 1 chr1:160343318-160343818 ( 20) CGCCGCGACCGCCACTGTCTCC 1 chr6:79078056-79078556 ( 1) GGCCGTGGCCGCCTCCGCCGCG 1 chr16:234338-234838 ( 58) CCGTCCTCGCTCCTCTCCGTCC 1 chr12:106357575-10635807 ( 50) CTCCGCGCCCGCCTTCCCTGCA 1 chr6:143450470-143450970 ( 19) CTGCCCGCGCTCCTCCTCTGCC 1 chr7:99616303-99616803 ( 76) GCCCCCTATCTCCTCTGCCCCT 1 chr12:47080555-47081055 ( 24) CTCCTTCCCCTCTTCTCTCTCC 1 chr15:69452736-69453236 ( 6) CCGCGCCATGGCCTCTGTCTCC 1 chr19:10654196-10654696 ( 49) GACCGCAGCCGCCGCCGCCGCC 1 chr19:37077822-37078322 ( 53) CGGCCCCAGCTCCTCCCCCGCA 1 chr14:91060245-91060745 ( 57) CCTCGCAGCCGCTGCCGCGGCC 1 chr8:11016165-11016665 ( 48) CTGCGCTACTCCCGCTGCGTCC 1 chr8:11802689-11803189 ( 70) CCCAGCGAGCTCCTTCCCCGCC 1 chr19:35154708-35155208 ( 64) CCGCCCGCCTGCCTCAGTCTCC 1 chr6:85642860-85643360 ( 8) CTCCTCCAGCTCCTCCTTCTCC 1 chr7:102572306-102572806 ( 15) TGCTCCCGCCGCCGTTGCGTCC 1 chr19:34134454-34134954 ( 58) CCCCGGACCCTCCTGCGCGCCC 1 chr21:25607268-25607768 ( 39) TTCTCCGCCCTCCTCCCCCGGA 1 chr8:94474627-94475127 ( 54) CGCTCCTGCCGCCTTCCCTCCC 1 chr6:42890474-42890974 ( 67) CTCGGCCCCGGCCTCTGCCTCA 1 chr6:4018174-4018674 ( 10) GGGCCCTGTCGCCGCCGCGCCC 1 chr1:148402448-148402948 ( 28) CCTCCGCCCCGCCGCAGCCTCA 1 chr17:7234309-7234809 ( 46) CACCCCGCGCTCCTCAGCCGCC 1 chr16:31179987-31180487 ( 54) GTGCGCCGCCGCCGTCGCCTCG 1 chr1:228140151-228140651 ( 51) CGCAGGGACCGCTGCCGCCTCG 1 chr1:63523036-63523536 ( 72) CCCCGCTCGCTCCTTTGCTCGC 1 chr12:70242753-70243253 ( 5) CCCCCGCACGTCCGCCTCGTCA 1 chr12:123601768-12360226 ( 5) TCCCGCGGACGCCTTTCCTCCC 1 chr1:1307957-1308457 ( 30) CCGCGCCCTCCCCGCGCCCTCC 1 chr11:47578724-47579224 ( 34) GCCCGGAACCTCCGCTTCCGGC 1 chr1:163321572-163322072 ( 65) CGCCCTGCGCCCTGCCCCTTCC 1 chr4:102827358-102827858 ( 54) GTCCGCCAACGCCGCCGTCCCG 1 chr19:43798770-43799270 ( 49) TTCCCGAAACCCTTCTCCCTCC 1 chr1:156456741-156457241 ( 68) GTCCCCTCACCCCTCTCCCCCG 1 chr21:39183016-39183516 ( 27) GTGCCTCACCTCTTCCGCGCCA 1 chr5:177086896-177087396 ( 34) TCCCCGTAGCCCCGCCGCCTCT 1 chr19:58305326-58305826 ( 55) CGCACCGCGCGCCTCTCTGCCC 1 chr1:226308702-226309202 ( 45) CTCCGGTGTTGCCGCCGCGTCG 1 chr6:83192826-83193326 ( 8) TCCCGCGCGCTCCGCCGCTCGG 1 chr19:37655818-37656318 ( 72) CTGAGTGACGGCCGCCGCGCCC 1 chr21:39313556-39314056 ( 67) TCCCCCACTCGCTGCTGCGGCG 1 chr8:94719594-94720094 ( 60) CCCACCCCCCTCCGGTGTCGCC 1 chr1:229342693-229343193 ( 18) CCTCCTTCCCGCCGCGCCCGGC 1 chr16:30021286-30021786 ( 15) CTTCGCAGACTCCGCTCCCTGC 1 chr15:70097459-70097959 ( 69) GGCCCGGCTCTCCTCTCCGCGC 1 chr12:12266976-12267476 ( 76) TCCCGGACCGGCCGCTTCGGCC 1 chr21:46324080-46324580 ( 58) TCCGGTGCCCGCCACCGCCCCC 1 chr6:24774894-24775394 ( 27) CCCACTTCCTGCCGCCTCTTGC 1 chr4:4541838-4542338 ( 16) TGCCCCACACGCCTCCCCCCGG 1 chr1:223846047-223846547 ( 22) CGCCGTCACCTCCTCGGCGGCT 1 chr19:39390606-39391106 ( 67) CCCCGTCCGGGCTGCCGTCGCC 1 chr19:40662801-40663301 ( 77) CTCCCTGGGGCCCGCTGCTTCC 1 chr1:52365724-52366224 ( 67) CTGCCCCGCCCGCGCCGCCTCC 1 chr19:48169880-48170380 ( 3) CAGCCCGCGCTCTTCCGTCTCC 1 chr19:35717088-35717588 ( 70) GCCACCCGCCTCCTCTCCGGGA 1 chr16:21599280-21599780 ( 32) GCCGCGGAACGCCGCTGCCCCC 1 chr1:146387203-146387703 ( 18) TGCACCTATCTCCGCCCCGCCA 1 chr1:167455188-167455688 ( 75) CTCCGGCCCTTCCTCACCATGC 1 chr19:39397576-39398076 ( 53) CTCCCTGTTGGCCTCTGCTGCC 1 chr19:41310147-41310647 ( 22) CCCACCCGCCGCCTGCGCGTGA 1 chr19:58278888-58279388 ( 2) TCCCGCTACCCCTTCGTCCTCG 1 chr17:4731337-4731837 ( 65) GCCCGGTCACGCTTTCGCTCCC 1 chr2:96638171-96638671 ( 31) GCCGCTCACCGCCTCTCCCTTC 1 chr20:52972214-52972714 ( 65) CGCACGCACCCCCGCTTCCTCG 1 chr15:72118340-72118840 ( 78) CTCTCCACCCACTGCCCCCTCC 1 chr12:54188168-54188668 ( 19) TGATCCGCCCGCCTCGGCCTCC 1 chr19:40634446-40634946 ( 7) CCCCCCGATGGCCACCGCGCGC 1 chr1:224615759-224616259 ( 6) GCGCCTAAACGCCGCAGCCGCC 1 chr12:26832742-26833242 ( 12) CCCCGGTCTGGCTTCCCCGGCG 1 chr12:103965827-10396632 ( 41) CGGGGCCAGCGCCGCCCCTCCC 1 chr5:38556669-38557169 ( 29) CCTCGCTCTCCCCTGCGCTTCC 1 chr1:184386455-184386955 ( 26) GTCCCGTCCGGCCTTCCCGGGC 1 chr8:123396269-123396769 ( 26) CCCTCCGCCGTCTGTCCCGCCC 1 chr19:34404369-34404869 ( 13) CTCGCCCACTCCCTCCGCACCC 1 chr17:2303419-2303919 ( 5) GCGACTCACCTCTGCTCCCGGC 1 chr21:37366796-37367296 ( 34) TGGTGCCGCTGCCGCCGCCGGC 1 chr12:57782457-57782957 ( 67) TTCTGGCCCTTCCGCCGCGCCG 1 chr18:50281046-50281546 ( 23) GGCCCTTCATTCCTCCCCGTCA 1 chr11:57741090-57741590 ( 27) CCCAGCGTCCCCTGTCCCCTCC 1 chr21:44939671-44940171 ( 77) TGCCGGGAGCCCCGCGGCCGCC 1 chr2:148020343-148020843 ( 10) TTGCGCCACCGACGCCCCTGGC 1 chr7:47979306-47979806 ( 20) GCCCGCCGCGGCTGCGCCATCC 1 chr12:96906852-96907352 ( 5) GCCCCGGCCCGCAGTTCCCGCC 1 chr5:139341763-139342263 ( 78) TTTAGGCCCCTCTGCCGTCGCC 1 chr1:160262013-160262513 ( 29) TTCCGGCTCGGCCTGCGCCCCC 1 chr22:38681739-38682239 ( 45) TGCCGCCGTCGCTGCTGCCGGT 1 chr1:40257864-40258364 ( 64) CCGCCCCCATCCCTCCCTCTGC 1 chr2:241102092-241102592 ( 55) GTCCGTCACCGACGCCGTTCCC 1 chr1:28581593-28582093 ( 3) CTTCCTGCGCGCCGTTCCCCGC 1 chr19:18571708-18572208 ( 55) CAGGGCCGCCTCTTCTGCCGCC 1 chr15:72117583-72118083 ( 61) CGGCCGCGGCGCATCCCCCGCC 1 chr12:112382395-11238289 ( 35) CGCCGCTTCCCCCGTCCTGTCC 1 chr10:122953918-12295441 ( 15) GGCCTCACCCGCCGCCCCACGC 1 chr19:39532428-39532928 ( 57) CCCCGCCGCCGACTGCCCCCCG 1 chr19:12806533-12807033 ( 36) GCCCCTGCCCGCCTCATCGACG 1 chr8:43093769-43094269 ( 2) GCATTCTCCCGCCTCAGCCTCC 1 chr1:230642429-230642929 ( 52) GCGCGCGGCGTCCGCTCCCCGG 1 chr6:33299565-33300065 ( 21) CTGCGCCGCCGCTTCCTTCGTC 1 chr1:25247056-25247556 ( 57) CGCCGTCGACGCCTCCCTCACG 1 chr7:92590094-92590594 ( 74) TCCTCTTGCCGCCTCCCCACTC 1 chr14:24213061-24213561 ( 54) CGGCCGGACCGCTGCGCCGGGC 1 chr1:25998122-25998622 ( 58) GTAACCCTCCGCCTCACCCTCC 1 chr12:56041881-56042381 ( 57) GTCTCCTCTCTCCGGTCCGTGC 1 chr19:49850650-49851150 ( 77) TCGCCTTCGTTCTTCTGCCACC 1 chr15:75023447-75023947 ( 12) CCCCTCCCGCGCCGCCGCGAGA 1 chr3:134795177-134795677 ( 57) CCCACGCGCGCCCGCACCGCCC 1 chr7:114085831-114086331 ( 77) CTCTGCGGCGTCCTGTCCCCCA 1 chr17:61927506-61928006 ( 6) GCTCTCGATTTCTGCCGCGTCC 1 chr5:40835085-40835585 ( 47) GCCTGGTACCGCATCCTCCTCT 1 chr3:49940094-49940594 ( 46) TCGCGGGGCGGCTGCGGCCTCG 1 chr14:64986653-64987153 ( 11) TCGCCGTAGCGCTTTAGCCCGC 1 chr16:25258062-25258562 ( 38) CGCCGCGCCGTGCACCTCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCSCBVCCKCCKCYSCCBCC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.26723 E= 7.1e-019 -1364 91 -36 12 -274 64 -47 55 -315 120 -36 -142 -83 129 -241 -83 -1364 73 66 -193 -1364 99 -36 -9 -104 33 3 17 43 53 -18 -242 -115 106 -83 -65 -1364 136 -97 -104 -473 -113 91 58 -315 172 -422 -1364 -315 138 -1364 7 -242 -1364 68 124 -1364 149 -222 -83 -128 93 -205 47 -1364 42 73 -74 -1364 157 -1364 -65 -174 84 -18 -42 -242 -5 -13 99 -1364 135 -32 -315 -104 127 -105 -193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCSCBVCCKCCKCYSCCBCC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 128 E= 7.1e-019 0.000000 0.546875 0.226562 0.226562 0.031250 0.453125 0.210938 0.304688 0.023438 0.671875 0.226562 0.078125 0.117188 0.710938 0.054688 0.117188 0.000000 0.484375 0.460938 0.054688 0.000000 0.578125 0.226562 0.195312 0.101562 0.367188 0.296875 0.234375 0.281250 0.421875 0.257812 0.039062 0.093750 0.609375 0.164062 0.132812 0.000000 0.750000 0.148438 0.101562 0.007812 0.132812 0.546875 0.312500 0.023438 0.960938 0.015625 0.000000 0.023438 0.757812 0.000000 0.218750 0.039062 0.000000 0.468750 0.492188 0.000000 0.820312 0.062500 0.117188 0.085938 0.554688 0.070312 0.289062 0.000000 0.390625 0.484375 0.125000 0.000000 0.867188 0.000000 0.132812 0.062500 0.523438 0.257812 0.156250 0.039062 0.281250 0.265625 0.414062 0.000000 0.742188 0.234375 0.023438 0.101562 0.703125 0.140625 0.054688 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCSCBVCCKCCKCYSCCBCC MEME-8 regular expression -------------------------------------------------------------------------------- [CGT][CTG][CG]C[CG][CG][CGT][CAG]CC[GT]C[CT][TG]C[CT][GC]C[CG][TCG][CG]C -------------------------------------------------------------------------------- Time 2785.54 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACACACAC MEME-9 width = 12 sites = 43 llr = 480 E-value = 4.3e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACACACAC MEME-9 Description -------------------------------------------------------------------------------- Simplified A 7:a:a:7:7:9: pos.-specific C :a:8:8:a1817 probability G 2::1:21:22:3 matrix T 1:::::2::::: bits 2.3 2.0 * 1.8 * * * 1.6 ** * * * Relative 1.4 ** * * * Entropy 1.1 ******* ** (16.1 bits) 0.9 ************ 0.7 ************ 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel ACACACACACAC consensus G T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr19:35947339-35947839 - 81 5.02e-08 ACACACAC ACACACACACAC ACACACACAC chr19:36837855-36838355 + 77 5.02e-08 acacacatac acacacacacac acaAGCTCCC chr1:161097515-161098015 - 45 5.02e-08 GGTGACACAC ACACACACACAC ACACACACAC chr19:34973379-34973879 - 49 5.02e-08 ACACACACAC ACACACACACAC ACACACACAC chr19:43901264-43901764 + 89 5.02e-08 CATTCATCTc acacacacacac chr5:134556862-134557362 + 5 5.02e-08 taaa acacacacacac cacacaaaca chr19:33797037-33797537 - 35 5.02e-08 GCGCGCGCGC ACACACACACAC ACACACACAC chr19:35819803-35820303 + 77 5.02e-08 acacacacac acacacacacac acacacacac chr20:52972214-52972714 - 48 1.51e-07 CCTCGCACAC ACACACTCACAC CCCCCACATA chr1:21345686-21346186 - 24 3.21e-07 GCGCGCGCGC GCACACACACAC ACACACACAC chr15:75023447-75023947 - 74 3.21e-07 GAAAATAAGG ACACACACAGAC AGCCGTGGAC chr1:150235772-150236272 + 50 3.92e-07 tagcgcgcgc acacacacgcac gcacgcgcgc chr19:40090474-40090974 + 6 4.42e-07 CACGC ACACACTCACAG TCCCCTCCGT chr1_KI270713v1_random:2 + 14 5.43e-07 agttgggatt acagacacacac cactgcgccc chr19:36772265-36772765 + 86 6.63e-07 CGTCCAGGAC ACACACACCCAC TCC chr16:85522948-85523448 - 42 7.84e-07 AGGCACACGT GCACACACACAG GGCAGACACA chr19:36528785-36529285 - 61 1.18e-06 ACACAGCGTT ACACAGTCACAC AATAACAGTC chr1:67850428-67850928 - 2 1.81e-06 TTATCTAAGT TCACACTCACAC C chr19:47229841-47230341 + 74 1.81e-06 TCCCGGAACA GCACACACAGAC AACTCTCACC chr8:28401381-28401881 - 75 2.01e-06 CCCCGAGTGC GCACACACGCAC ATACACGCGC chr19:36213947-36214447 + 56 2.34e-06 CGGCGTCACC Acacagtcacag gcacaggcaa chr1:40257864-40258364 - 37 2.60e-06 GCTGGCAGTG TCACAGACACAC TCTTCCCCTT chr3:134795177-134795677 + 7 3.43e-06 acgcac gcacacacccac ctctcccata chr3:9249072-9249572 + 65 4.28e-06 actcaccggg acacgcacacag ttgtgctgtg chr7:66920710-66921210 + 14 6.01e-06 atcacacacc acacacgcgcac acagatgcac chr12:49130912-49131412 + 14 6.44e-06 CCCGCTATTT ACACACACCGAG GTCTCACCAC chr5:69217766-69218266 - 43 7.15e-06 AGTCCCATCC TCACACACACCC GCGGGCGCCG chr17:32350253-32350753 - 76 7.15e-06 CTCCTGAGTC ACAGAGTCACAC GACCCACAAC chr19:40715305-40715805 + 26 7.72e-06 TCCACTTTGC ACAAACACCCAC ATTCTGGCAC chr10:72273816-72274316 - 58 7.72e-06 GAGCTCTAGG ACCCACACACAG AAGGGACACT chr1:200488186-200488686 + 31 9.60e-06 atttttggaa gcacagtcacag tgggtctcat chr19:58327005-58327505 + 77 1.03e-05 CGAGTGCCGG ACACACGCGCAG AGGATGTGAC chr10:92592417-92592917 + 45 1.03e-05 acacacacac acacacaAAGAC TATTCTGGTC chr17:74203496-74203996 - 13 1.57e-05 ATCACCCTAG AGACACTCACAG CAAGCAGCAA chr17:48728653-48729153 - 50 1.71e-05 AGAGAGAGAG ACAGAGACAGAG AGAGAGAGAG chr10:101442020-10144252 - 60 1.71e-05 ACACATACAC ACAGAGACAGAG AGAGAGAGAG chr19:37371123-37371623 - 4 1.97e-05 ATACAGTGAA ACACACACGGCC TCC chr15:74889899-74890399 - 12 2.39e-05 CGCTCCACGA ACACACTCGCCG ACACCCCAGC chr6:28587002-28587502 + 77 2.39e-05 TGGAGGTTCC GCAGACACACCC GCAGCTGTGC chr15:72118340-72118840 + 63 2.39e-05 CCGCCCCTTT TCAAACACGCAC GCTCTCTCCA chr19:38224231-38224731 + 24 2.80e-05 acctggactc gcacacgcccac gcatggcagt chr21:46635614-46636114 - 25 2.80e-05 TCCGCCAGCG ACGCACACGCAG TGCGAGGACG chr1:144551535-144552035 + 53 4.32e-05 Tcagggaaaa gcacggacacag ccccccacta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35947339-35947839 5e-08 80_[-9]_8 chr19:36837855-36838355 5e-08 76_[+9]_12 chr1:161097515-161098015 5e-08 44_[-9]_44 chr19:34973379-34973879 5e-08 48_[-9]_40 chr19:43901264-43901764 5e-08 88_[+9] chr5:134556862-134557362 5e-08 4_[+9]_84 chr19:33797037-33797537 5e-08 34_[-9]_54 chr19:35819803-35820303 5e-08 76_[+9]_12 chr20:52972214-52972714 1.5e-07 47_[-9]_41 chr1:21345686-21346186 3.2e-07 23_[-9]_65 chr15:75023447-75023947 3.2e-07 73_[-9]_15 chr1:150235772-150236272 3.9e-07 49_[+9]_39 chr19:40090474-40090974 4.4e-07 5_[+9]_83 chr1_KI270713v1_random:2 5.4e-07 13_[+9]_75 chr19:36772265-36772765 6.6e-07 85_[+9]_3 chr16:85522948-85523448 7.8e-07 41_[-9]_47 chr19:36528785-36529285 1.2e-06 60_[-9]_28 chr1:67850428-67850928 1.8e-06 1_[-9]_87 chr19:47229841-47230341 1.8e-06 73_[+9]_15 chr8:28401381-28401881 2e-06 74_[-9]_14 chr19:36213947-36214447 2.3e-06 55_[+9]_33 chr1:40257864-40258364 2.6e-06 36_[-9]_52 chr3:134795177-134795677 3.4e-06 6_[+9]_82 chr3:9249072-9249572 4.3e-06 64_[+9]_24 chr7:66920710-66921210 6e-06 13_[+9]_75 chr12:49130912-49131412 6.4e-06 13_[+9]_75 chr5:69217766-69218266 7.2e-06 42_[-9]_46 chr17:32350253-32350753 7.2e-06 75_[-9]_13 chr19:40715305-40715805 7.7e-06 25_[+9]_63 chr10:72273816-72274316 7.7e-06 57_[-9]_31 chr1:200488186-200488686 9.6e-06 30_[+9]_58 chr19:58327005-58327505 1e-05 76_[+9]_12 chr10:92592417-92592917 1e-05 44_[+9]_44 chr17:74203496-74203996 1.6e-05 12_[-9]_76 chr17:48728653-48729153 1.7e-05 49_[-9]_39 chr10:101442020-10144252 1.7e-05 59_[-9]_29 chr19:37371123-37371623 2e-05 3_[-9]_85 chr15:74889899-74890399 2.4e-05 11_[-9]_77 chr6:28587002-28587502 2.4e-05 76_[+9]_12 chr15:72118340-72118840 2.4e-05 62_[+9]_26 chr19:38224231-38224731 2.8e-05 23_[+9]_65 chr21:46635614-46636114 2.8e-05 24_[-9]_64 chr1:144551535-144552035 4.3e-05 52_[+9]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACACACAC width=12 seqs=43 chr19:35947339-35947839 ( 81) ACACACACACAC 1 chr19:36837855-36838355 ( 77) ACACACACACAC 1 chr1:161097515-161098015 ( 45) ACACACACACAC 1 chr19:34973379-34973879 ( 49) ACACACACACAC 1 chr19:43901264-43901764 ( 89) ACACACACACAC 1 chr5:134556862-134557362 ( 5) ACACACACACAC 1 chr19:33797037-33797537 ( 35) ACACACACACAC 1 chr19:35819803-35820303 ( 77) ACACACACACAC 1 chr20:52972214-52972714 ( 48) ACACACTCACAC 1 chr1:21345686-21346186 ( 24) GCACACACACAC 1 chr15:75023447-75023947 ( 74) ACACACACAGAC 1 chr1:150235772-150236272 ( 50) ACACACACGCAC 1 chr19:40090474-40090974 ( 6) ACACACTCACAG 1 chr1_KI270713v1_random:2 ( 14) ACAGACACACAC 1 chr19:36772265-36772765 ( 86) ACACACACCCAC 1 chr16:85522948-85523448 ( 42) GCACACACACAG 1 chr19:36528785-36529285 ( 61) ACACAGTCACAC 1 chr1:67850428-67850928 ( 2) TCACACTCACAC 1 chr19:47229841-47230341 ( 74) GCACACACAGAC 1 chr8:28401381-28401881 ( 75) GCACACACGCAC 1 chr19:36213947-36214447 ( 56) ACACAGTCACAG 1 chr1:40257864-40258364 ( 37) TCACAGACACAC 1 chr3:134795177-134795677 ( 7) GCACACACCCAC 1 chr3:9249072-9249572 ( 65) ACACGCACACAG 1 chr7:66920710-66921210 ( 14) ACACACGCGCAC 1 chr12:49130912-49131412 ( 14) ACACACACCGAG 1 chr5:69217766-69218266 ( 43) TCACACACACCC 1 chr17:32350253-32350753 ( 76) ACAGAGTCACAC 1 chr19:40715305-40715805 ( 26) ACAAACACCCAC 1 chr10:72273816-72274316 ( 58) ACCCACACACAG 1 chr1:200488186-200488686 ( 31) GCACAGTCACAG 1 chr19:58327005-58327505 ( 77) ACACACGCGCAG 1 chr10:92592417-92592917 ( 45) ACACACAAAGAC 1 chr17:74203496-74203996 ( 13) AGACACTCACAG 1 chr17:48728653-48729153 ( 50) ACAGAGACAGAG 1 chr10:101442020-10144252 ( 60) ACAGAGACAGAG 1 chr19:37371123-37371623 ( 4) ACACACACGGCC 1 chr15:74889899-74890399 ( 12) ACACACTCGCCG 1 chr6:28587002-28587502 ( 77) GCAGACACACCC 1 chr15:72118340-72118840 ( 63) TCAAACACGCAC 1 chr19:38224231-38224731 ( 24) GCACACGCCCAC 1 chr21:46635614-46636114 ( 25) ACGCACACGCAG 1 chr1:144551535-144552035 ( 53) GCACGGACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.7973 E= 4.3e-018 174 -1207 -48 -116 -1207 174 -364 -1207 219 -364 -364 -1207 -216 152 -133 -1207 219 -1207 -265 -1207 -1207 148 -65 -1207 179 -1207 -206 1 -316 174 -1207 -1207 174 -133 -65 -1207 -1207 152 -84 -1207 212 -165 -1207 -1207 -1207 121 16 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 43 E= 4.3e-018 0.697674 0.000000 0.209302 0.093023 0.000000 0.976744 0.023256 0.000000 0.953488 0.023256 0.023256 0.000000 0.046512 0.837209 0.116279 0.000000 0.953488 0.000000 0.046512 0.000000 0.000000 0.813953 0.186047 0.000000 0.720930 0.000000 0.069767 0.209302 0.023256 0.976744 0.000000 0.000000 0.697674 0.116279 0.186047 0.000000 0.000000 0.837209 0.162791 0.000000 0.906977 0.093023 0.000000 0.000000 0.000000 0.674419 0.325581 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAC MEME-9 regular expression -------------------------------------------------------------------------------- [AG]CACAC[AT]CACA[CG] -------------------------------------------------------------------------------- Time 3082.81 secs. ******************************************************************************** ******************************************************************************** MOTIF WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 width = 30 sites = 28 llr = 435 E-value = 3.1e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 Description -------------------------------------------------------------------------------- Simplified A 3:2:921731136:12651:1138165175 pos.-specific C 11:::3::152423:1221341414::4:1 probability G 1242:::::2:1111:::231::121211: matrix T 4638:5936272168813644831433423 bits 2.3 2.0 1.8 * 1.6 * * Relative 1.4 * ** Entropy 1.1 ** ** ** * * (22.4 bits) 0.9 ** *** * *** * * * * 0.7 * ****** * ***** * * ** ** 0.5 ********* * ******* **** ** ** 0.2 *********** ****************** 0.0 ------------------------------ Multilevel TTGTATTATCTCATTTAATTTTCACAACAA consensus A TG C TATCA C CT CC A TTTT T sequence A A T C G T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr19:35535955-35536455 + 16 2.32e-14 taagcaatcc atgtattacctcatttaatcctcacaacaa ccctctaaga chr1:233293988-233294488 + 36 4.20e-13 gtggctttat atgtactatctcatttaatccctaaaacaa tctgtaaatc chr8:28514878-28515378 - 53 6.90e-13 AATGCCTTAC ACATATTATCTCATTTAACCTTCACAACAA TCCTATAAGG chr1:151012476-151012976 + 33 8.12e-13 taggcactta tggtactatctcatttaatcctcctaacaa catcatgaaa chr19:44212611-44213111 - 44 2.45e-12 AAGGTTTGAC CCGTATTATCTTGTTTAATTCTAATTACAA CCCTACACAG chr5:145975639-145976139 - 43 1.24e-11 CCATGTCTTA ATGTACTATCTCATCTAAGCCTTACAACAA TCCACGAGGC chr19:40719213-40719713 + 34 1.61e-09 agtgctgtgc ttttattaactcactcactcctcgcagcaa ccctaatgag chr19:43492702-43493202 - 58 7.06e-09 GCCCACTGGT TTTTATTTTTTAACTTAACTCTATCTTGGA GATTGTTTTA chrUn_KI270466v1:187-687 - 17 7.81e-09 TACACAAAAT ATGTATTATGTACTGTACATACAATATCAA AGGACCCAAA chr5:149449008-149449508 - 45 9.54e-09 TGCTCCTATT TTTTAATTTGTACTTTCATGTTACGTTTTA TGCATTCCTT chrUn_KI270467v1:3122-36 + 25 1.72e-08 attttggcta ctttgatattttatgtacagtttacaatat atattttggg chr20:1469724-1470224 + 39 4.80e-08 TCAGCAAAGT TGGGACTATTTGTCTCTCTTTTCACAACAT CTTCAACTAA chr16:4253961-4254461 - 70 5.75e-08 C TGAGATTATCCAGCTAAATTTACATAGGAT CTGGCCCGGC chr1:26329828-26330328 + 53 6.29e-08 tggcTTCATT CTAGATTTCTCCTTTTCATCTTCatgataa caataacaac chr3:4987101-4987601 - 66 8.19e-08 CCTGC TTTTATTTATCTACAAAATGTGAATTGTAA TAGTACCCAT chr22:24805589-24806089 + 29 1.49e-07 agggcttcac atccaatatctcacttaaggctcagatcgt tctgagaccc chr12:123457722-12345822 + 58 1.62e-07 CAACTTAGTT GTTGAATTAGCAATTTTTCTCTTAAAAAAA TTTTTTTTTA chr10:45564504-45565004 - 15 1.62e-07 GTCGTTGTTG TTGTTTATTCTTAGTTACTGTCAATATTTT TCTCCTTTTG chr19:40556267-40556767 + 12 2.89e-07 cagtgttggt tattattATCAGCttattattttattgtta cttattgtta chr19:43226949-43227449 + 34 3.39e-07 tgactactgc ttatcctaccttatgtatttcttgctttac cagctgattg chr19:41376159-41376659 - 7 3.67e-07 TTGCAAATAA ACTTACATACACATGTATTCCTCAGCACAA CCCTAA chr1:67850428-67850928 - 50 4.29e-07 AAGAGCTACC ATGTATTAAGTGCTTACTTTGTCCCAGGAC TGTGCTAGAT chr6:144482120-144482620 + 14 6.32e-07 ATGTTGTGCT GGAGAATTACCAACTTCTTTGTAATAGAAT TCGAGGAAAG chrUn_KI270467v1:2907-34 + 52 6.81e-07 tatgtacagt atgtaatatatattttgagtatttggatat tttatgtaca chr5:65624654-65625154 - 23 6.81e-07 CTACTGTGTC CTTTACAAACTGGCTTCTTTTCAACAAGTC CATTTCTTCT chr10:89701618-89702118 + 50 6.81e-07 GAGGAATGAG TCATACTAATTCGGTTACggtttaaatctc gcctccactg chrUn_KI270467v1:2070-25 + 69 7.35e-07 ctatatattc gggtactttgatatattatgtacagtatat aa chr17:18363685-18364185 - 14 1.64e-06 GTGTCTGCTC TTGGATTATACACCTACAGAGTAATAATGT TGCAGTTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35535955-35536455 2.3e-14 15_[+10]_55 chr1:233293988-233294488 4.2e-13 35_[+10]_35 chr8:28514878-28515378 6.9e-13 52_[-10]_18 chr1:151012476-151012976 8.1e-13 32_[+10]_38 chr19:44212611-44213111 2.5e-12 43_[-10]_27 chr5:145975639-145976139 1.2e-11 42_[-10]_28 chr19:40719213-40719713 1.6e-09 33_[+10]_37 chr19:43492702-43493202 7.1e-09 57_[-10]_13 chrUn_KI270466v1:187-687 7.8e-09 16_[-10]_54 chr5:149449008-149449508 9.5e-09 44_[-10]_26 chrUn_KI270467v1:3122-36 1.7e-08 24_[+10]_46 chr20:1469724-1470224 4.8e-08 38_[+10]_32 chr16:4253961-4254461 5.7e-08 69_[-10]_1 chr1:26329828-26330328 6.3e-08 52_[+10]_18 chr3:4987101-4987601 8.2e-08 65_[-10]_5 chr22:24805589-24806089 1.5e-07 28_[+10]_42 chr12:123457722-12345822 1.6e-07 57_[+10]_13 chr10:45564504-45565004 1.6e-07 14_[-10]_56 chr19:40556267-40556767 2.9e-07 11_[+10]_59 chr19:43226949-43227449 3.4e-07 33_[+10]_37 chr19:41376159-41376659 3.7e-07 6_[-10]_64 chr1:67850428-67850928 4.3e-07 49_[-10]_21 chr6:144482120-144482620 6.3e-07 13_[+10]_57 chrUn_KI270467v1:2907-34 6.8e-07 51_[+10]_19 chr5:65624654-65625154 6.8e-07 22_[-10]_48 chr10:89701618-89702118 6.8e-07 49_[+10]_21 chrUn_KI270467v1:2070-25 7.3e-07 68_[+10]_2 chr17:18363685-18364185 1.6e-06 13_[-10]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTDTAYTATCTHAYTTAATBYTHABAAYAW width=30 seqs=28 chr19:35535955-35536455 ( 16) ATGTATTACCTCATTTAATCCTCACAACAA 1 chr1:233293988-233294488 ( 36) ATGTACTATCTCATTTAATCCCTAAAACAA 1 chr8:28514878-28515378 ( 53) ACATATTATCTCATTTAACCTTCACAACAA 1 chr1:151012476-151012976 ( 33) TGGTACTATCTCATTTAATCCTCCTAACAA 1 chr19:44212611-44213111 ( 44) CCGTATTATCTTGTTTAATTCTAATTACAA 1 chr5:145975639-145976139 ( 43) ATGTACTATCTCATCTAAGCCTTACAACAA 1 chr19:40719213-40719713 ( 34) TTTTATTAACTCACTCACTCCTCGCAGCAA 1 chr19:43492702-43493202 ( 58) TTTTATTTTTTAACTTAACTCTATCTTGGA 1 chrUn_KI270466v1:187-687 ( 17) ATGTATTATGTACTGTACATACAATATCAA 1 chr5:149449008-149449508 ( 45) TTTTAATTTGTACTTTCATGTTACGTTTTA 1 chrUn_KI270467v1:3122-36 ( 25) CTTTGATATTTTATGTACAGTTTACAATAT 1 chr20:1469724-1470224 ( 39) TGGGACTATTTGTCTCTCTTTTCACAACAT 1 chr16:4253961-4254461 ( 70) TGAGATTATCCAGCTAAATTTACATAGGAT 1 chr1:26329828-26330328 ( 53) CTAGATTTCTCCTTTTCATCTTCATGATAA 1 chr3:4987101-4987601 ( 66) TTTTATTTATCTACAAAATGTGAATTGTAA 1 chr22:24805589-24806089 ( 29) ATCCAATATCTCACTTAAGGCTCAGATCGT 1 chr12:123457722-12345822 ( 58) GTTGAATTAGCAATTTTTCTCTTAAAAAAA 1 chr10:45564504-45565004 ( 15) TTGTTTATTCTTAGTTACTGTCAATATTTT 1 chr19:40556267-40556767 ( 12) TATTATTATCAGCTTATTATTTTATTGTTA 1 chr19:43226949-43227449 ( 34) TTATCCTACCTTATGTATTTCTTGCTTTAC 1 chr19:41376159-41376659 ( 7) ACTTACATACACATGTATTCCTCAGCACAA 1 chr1:67850428-67850928 ( 50) ATGTATTAAGTGCTTACTTTGTCCCAGGAC 1 chr6:144482120-144482620 ( 14) GGAGAATTACCAACTTCTTTGTAATAGAAT 1 chrUn_KI270467v1:2907-34 ( 52) ATGTAATATATATTTTGAGTATTTGGATAT 1 chr5:65624654-65625154 ( 23) CTTTACAAACTGGCTTCTTTTCAACAAGTC 1 chr10:89701618-89702118 ( 50) TCATACTAATTCGGTTACGGTTTAAATCTC 1 chrUn_KI270467v1:2070-25 ( 69) GGGTACTTTGATATATTATGTACAGTATAT 1 chr17:18363685-18364185 ( 14) TTGGATTATACACCTACAGAGTAATAATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.414 E= 3.1e-017 62 -103 -144 104 -254 -103 -71 162 4 -303 56 62 -1145 -303 -44 185 210 -303 -303 -254 4 14 -1145 116 -96 -1145 -1145 210 170 -1145 -1145 62 46 -144 -1145 154 -154 88 -71 4 -96 -44 -1145 170 46 29 -103 4 145 -71 -103 -96 -1145 14 -203 154 -154 -303 -103 185 -22 -203 -1145 185 154 -44 -303 -54 136 -44 -1145 26 -96 -144 -71 154 -254 -3 -22 104 -154 43 -144 104 -154 -103 -303 185 62 43 -1145 46 185 -144 -203 -154 -96 29 -71 78 162 -303 -203 26 136 -1145 -44 26 -154 56 -103 78 178 -1145 -144 -22 136 -103 -1145 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 28 E= 3.1e-017 0.321429 0.142857 0.107143 0.428571 0.035714 0.142857 0.178571 0.642857 0.214286 0.035714 0.428571 0.321429 0.000000 0.035714 0.214286 0.750000 0.892857 0.035714 0.035714 0.035714 0.214286 0.321429 0.000000 0.464286 0.107143 0.000000 0.000000 0.892857 0.678571 0.000000 0.000000 0.321429 0.285714 0.107143 0.000000 0.607143 0.071429 0.535714 0.178571 0.214286 0.107143 0.214286 0.000000 0.678571 0.285714 0.357143 0.142857 0.214286 0.571429 0.178571 0.142857 0.107143 0.000000 0.321429 0.071429 0.607143 0.071429 0.035714 0.142857 0.750000 0.178571 0.071429 0.000000 0.750000 0.607143 0.214286 0.035714 0.142857 0.535714 0.214286 0.000000 0.250000 0.107143 0.107143 0.178571 0.607143 0.035714 0.285714 0.250000 0.428571 0.071429 0.392857 0.107143 0.428571 0.071429 0.142857 0.035714 0.750000 0.321429 0.392857 0.000000 0.285714 0.750000 0.107143 0.071429 0.071429 0.107143 0.357143 0.178571 0.357143 0.642857 0.035714 0.071429 0.250000 0.535714 0.000000 0.214286 0.250000 0.071429 0.428571 0.142857 0.357143 0.714286 0.000000 0.107143 0.178571 0.535714 0.142857 0.000000 0.321429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTDTAYTATCTHAYTTAATBYTHABAAYAW MEME-10 regular expression -------------------------------------------------------------------------------- [TA]T[GTA][TG]A[TCA]T[AT][TA][CT][TC][CAT]A[TC]TT[AC][ATC]T[TCG][TC]T[CAT]A[CT][AT][ATG][CT]A[AT] -------------------------------------------------------------------------------- Time 3379.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:4253961-4254461 3.21e-03 69_[-10(5.75e-08)]_1 chr19:10332927-10333427 9.86e-01 100 chr6:32971004-32971504 5.12e-02 100 chr19:34501532-34502032 2.38e-01 100 chr1:154607548-154608048 3.80e-07 15_[+2(6.67e-05)]_17_[+2(4.25e-09)]_\ 24 chr1:228140151-228140651 1.85e-01 50_[-8(7.05e-06)]_28 chr15:72117583-72118083 5.40e-01 60_[+8(7.06e-05)]_18 chr7:92590094-92590594 1.80e-01 100 chr19:39397576-39398076 2.28e-01 52_[-8(2.97e-05)]_26 chr7:99616303-99616803 3.00e-07 7_[+2(1.76e-07)]_46_[+8(2.91e-06)]_\ 3 chr8:11802689-11803189 2.86e-01 69_[-8(4.30e-06)]_9 chr16:40589-41089 5.41e-31 8_[+3(5.34e-19)]_5_[+6(2.61e-10)]_2_\ [-1(2.45e-11)]_9 chr1:36148917-36149417 9.63e-01 100 chr17:7484227-7484727 2.13e-06 41_[+1(1.35e-05)]_2_[-5(2.28e-07)]_\ 25 chr10:46030169-46030669 7.01e-02 33_[+5(1.83e-06)]_51 chr1:151012476-151012976 5.85e-10 1_[+10(8.72e-05)]_1_[+10(8.12e-13)]_\ 20_[+1(1.89e-07)]_2 chr16:30408586-30409086 3.69e-11 23_[+1(9.04e-09)]_6_[-6(2.04e-09)]_\ 33 chr5:140556998-140557498 7.50e-01 100 chr19:18571708-18572208 2.37e-01 54_[-8(7.06e-05)]_24 chr5:74767004-74767504 7.70e-02 79_[-9(8.03e-05)]_9 chr20:45971971-45972471 3.66e-01 100 chr8:94474627-94475127 6.11e-02 53_[+8(5.52e-06)]_25 chr10:89701618-89702118 2.45e-03 49_[+10(6.81e-07)]_21 chr22:23913519-23914019 6.51e-02 26_[-5(5.02e-06)]_58 chr8:37538045-37538545 8.08e-10 51_[-1(2.45e-11)]_33 chr22:24555555-24556055 8.64e-01 100 chr8:11016165-11016665 2.69e-02 47_[-8(4.30e-06)]_31 chr17:74203496-74203996 8.87e-02 12_[-9(1.57e-05)]_76 chr17:32350253-32350753 7.77e-02 75_[-9(7.15e-06)]_13 chr6:138109308-138109808 3.49e-02 24_[-10(3.19e-05)]_46 chr5:35617577-35618077 6.17e-01 100 chr8:16825922-16826422 1.84e-01 100 chr3:155854240-155854740 8.26e-01 100 chr1:26329828-26330328 1.36e-26 3_[-7(3.46e-19)]_6_[+10(6.29e-08)]_\ 1_[-1(1.32e-09)]_1 chr6:28136630-28137130 6.74e-01 100 chr6:42565310-42565810 1.69e-11 18_[-2(3.60e-06)]_3_[-2(7.78e-10)]_\ 1_[-6(5.09e-09)]_12 chr5:134411625-134412125 9.05e-01 100 chr5:177086896-177087396 1.50e-01 33_[-8(1.41e-05)]_45 chr15:71780260-71780760 3.99e-10 53_[+2(3.00e-09)]_1_[+5(2.61e-06)]_\ 8 chr17:7932064-7932564 8.90e-02 100 chr1:233614103-233614603 4.78e-01 100 chr22:39399223-39399723 4.04e-31 [+4(4.67e-24)]_5_[+3(1.68e-19)]_8 chr1:70411134-70411634 1.03e-02 49_[-5(5.24e-07)]_35 chr6:96924660-96925160 5.90e-01 100 chr5:112976818-112977318 9.39e-03 73_[+8(4.37e-07)]_5 chr3:49940094-49940594 5.33e-02 100 chr3:187744894-187745394 2.68e-09 23_[-1(1.25e-10)]_37_[-6(7.04e-05)]_\ 2 chr19:30225120-30225620 6.14e-02 100 chr2:96638171-96638671 5.53e-02 30_[-8(3.29e-05)]_48 chr5:40798257-40798757 1.55e-01 11_[+8(4.86e-05)]_67 chr1:160343318-160343818 4.26e-03 19_[+8(1.94e-06)]_42_[-5(1.63e-05)]_\ 1 chr10:119178451-11917895 7.55e-01 100 chr16:87383811-87384311 9.28e-01 100 chr1:86774461-86774961 5.23e-02 100 chr14:24442353-24442853 2.15e-01 41_[-4(8.74e-05)]_10 chr12:120533965-12053446 1.42e-13 22_[-8(1.27e-06)]_9_[+2(1.40e-08)]_\ 2_[+2(1.91e-08)]_1 chr16:22296978-22297478 6.09e-02 4_[-4(9.70e-05)]_47 chr10:47553231-47553731 4.23e-01 100 chr1:28581593-28582093 1.56e-01 2_[-8(7.06e-05)]_76 chr14:24213061-24213561 2.23e-01 100 chr10:101442020-10144252 2.96e-16 26_[-1(4.40e-05)]_[-5(7.02e-09)]_1_\ [-9(1.71e-05)]_2_[-2(4.80e-12)]_5 chr1:101025720-101026220 7.52e-02 100 chr11:78188238-78188738 2.08e-01 100 chr6:83192826-83193326 1.95e-01 7_[+8(1.58e-05)]_71 chr19:58519734-58520234 2.08e-01 100 chr11:66001985-66002485 2.20e-02 72_[+5(2.06e-06)]_12 chr12:56190153-56190653 9.07e-01 100 chr15:70892164-70892664 2.74e-01 29_[-5(1.08e-05)]_55 chr8:123396269-123396769 2.02e-01 25_[+8(4.42e-05)]_53 chr6:85679042-85679542 5.48e-01 100 chr1:179954681-179955181 4.67e-02 75_[-5(5.56e-06)]_9 chr14:64986653-64987153 1.21e-01 100 chr1:145287515-145288015 4.82e-01 100 chr21:32771832-32772332 9.18e-03 [-3(7.15e-05)]_62 chr20:44475722-44476222 4.27e-01 100 chr19:42075307-42075807 3.57e-03 13_[-5(1.09e-06)]_7_[-5(2.94e-05)]_\ 28_[-5(4.36e-05)]_4 chr6:27231225-27231725 4.49e-36 6_[+4(4.21e-27)]_5_[+3(1.05e-21)]_2 chr1:169486107-169486607 7.24e-01 100 chr19:4233322-4233822 6.39e-01 100 chr21:39183016-39183516 8.08e-02 26_[+8(1.41e-05)]_52 chrX:72276832-72277332 4.07e-01 100 chr12:100200584-10020108 1.44e-01 20_[+5(3.84e-05)]_64 chr6:116100793-116101293 7.68e-01 100 chr17:14308802-14309302 9.51e-01 100 chr20:48921094-48921594 5.37e-03 19_[-5(1.83e-06)]_2_[-5(1.50e-05)]_\ 47 chr2:43219433-43219933 7.95e-07 14_[+9(5.02e-08)]_74 chr1:234608191-234608691 2.27e-01 8_[-5(9.00e-06)]_76 chr5:111091969-111092469 8.30e-01 100 chr19:49118691-49119191 6.29e-02 100 chr17:63741342-63741842 7.55e-01 100 chr1:225653413-225653913 9.68e-01 100 chr17:48728653-48729153 1.76e-04 12_[-5(2.97e-09)]_[-5(7.02e-09)]_12_\ [-5(2.28e-07)]_4_[-5(1.89e-07)]_8 chr10:100286276-10028677 3.55e-01 100 chr19:46347139-46347639 8.43e-01 100 chr1:229221148-229221648 4.47e-01 100 chr19:47113369-47113869 2.65e-02 31_[+5(3.65e-06)]_53 chr19:39412559-39413059 6.56e-01 100 chr1:19642506-19643006 1.91e-17 7_[+6(1.28e-09)]_[-1(2.45e-11)]_\ [+2(1.65e-09)]_33 chr19:40285671-40286171 5.53e-01 100 chr15:75023447-75023947 4.15e-05 73_[-9(3.21e-07)]_15 chr1:155193878-155194378 4.27e-10 38_[+6(5.44e-09)]_3_[-1(4.95e-07)]_\ 21 chr16:88811991-88812491 4.01e-01 100 chr12:123365295-12336579 1.61e-01 1_[+10(5.91e-05)]_69 chr17:63842540-63843040 8.14e-01 100 chr1:233293988-233294488 2.24e-09 35_[+10(4.20e-13)]_13_\ [+1(1.89e-07)]_6 chr5:38783078-38783578 1.29e-01 3_[+1(7.32e-06)]_81 chr5:175378423-175378923 2.69e-01 21_[+2(7.02e-05)]_57 chr6:27603518-27604018 3.24e-23 31_[-7(4.96e-20)]_1_[+1(2.45e-11)]_\ 9 chr19:49850650-49851150 3.07e-01 100 chr10:70145603-70146103 4.62e-01 100 chr20:3820126-3820626 4.32e-01 100 chr7:139340520-139341020 5.44e-03 62_[-5(3.27e-06)]_22 chr19:40508804-40509304 1.32e-13 56_[+1(3.36e-10)]_9_[+1(1.45e-08)]_\ 3 chr15:70097459-70097959 7.00e-02 68_[+8(1.76e-05)]_10 chr5:134370992-134371492 7.50e-02 100 chr14:32134462-32134962 1.50e-04 49_[-10(2.08e-07)]_21 chr10:122953918-12295441 6.72e-01 14_[-8(7.73e-05)]_64 chr1:25247056-25247556 1.82e-01 100 chr3:69250106-69250606 2.32e-06 [-9(5.02e-08)]_88 chr1:231040223-231040723 3.33e-01 100 chr17:18363685-18364185 6.11e-15 13_[-10(1.64e-06)]_12_\ [+1(4.91e-11)]_6_[+1(6.34e-09)]_7 chr16:30698658-30699158 2.10e-01 100 chr12:106075006-10607550 8.56e-09 21_[-1(7.45e-05)]_41_[+2(1.00e-09)] chr17:21042356-21042856 1.48e-01 11_[-8(2.97e-05)]_67 chr6:11093728-11094228 5.51e-01 100 chr1:167455188-167455688 1.65e-02 74_[+8(2.97e-05)]_4 chr20:1469724-1470224 1.10e-10 1_[-1(1.32e-09)]_21_[+10(4.80e-08)]_\ 8_[-1(6.34e-09)]_8 chr8:100952117-100952617 3.67e-06 10_[-5(7.12e-07)]_46_[-5(1.31e-07)]_\ 12 chr10:71319314-71319814 2.35e-02 12_[-5(2.92e-06)]_72 chr1:1959890-1960390 6.75e-02 26_[+8(1.94e-06)]_52 chr9:129036582-129037082 2.53e-02 11_[-2(3.02e-05)]_41_[+5(6.55e-05)]_\ 10 chr12:69585371-69585871 5.49e-02 44_[-5(2.37e-05)]_40 chr19:39320111-39320611 1.24e-07 [+2(4.80e-12)]_[+2(1.53e-05)]_56 chr2:223957198-223957698 2.89e-02 40_[-5(2.55e-05)]_44 chr1:226711170-226711670 1.88e-13 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chr15:68277402-68277902 7.32e-01 100 chr19:44259443-44259943 2.31e-07 22_[+1(4.54e-07)]_[-6(8.30e-11)]_40 chr10:13298621-13299121 1.16e-12 36_[+3(6.76e-13)]_3_[+6(1.04e-10)]_\ 1 chr19:36837855-36838355 5.04e-08 12_[+9(3.84e-05)]_12_[-9(5.83e-05)]_\ 6_[+2(4.80e-12)]_[+9(5.02e-08)]_12 chr5:148825829-148826329 2.04e-03 [+1(8.82e-06)]_23_[-9(6.87e-05)]_14_\ [-2(6.67e-05)]_13 chr17:32341936-32342436 3.77e-01 100 chr1:36255917-36256417 9.03e-25 20_[-7(4.82e-19)]_10_[+1(2.45e-11)]_\ 11 chr1:109484058-109484558 2.46e-03 84_[-5(8.24e-07)] chr16:3183985-3184485 3.39e-08 36_[-2(3.00e-09)]_42 chr17:59209678-59210178 6.38e-03 36_[+5(3.27e-06)]_48 chr19:41376159-41376659 9.39e-08 6_[-10(3.67e-07)]_40_[+1(1.31e-08)]_\ 8 chr14:22982638-22983138 1.47e-01 100 chr6:3231621-3232121 6.38e-06 28_[+5(6.12e-07)]_56 chr22:32472788-32473288 1.27e-28 16_[+3(1.02e-22)]_4_[+6(3.82e-10)]_\ [-1(6.52e-08)]_4 chr5:181218520-181219020 3.71e-16 42_[+3(4.19e-23)]_[+5(2.74e-05)]_4 chr1:93078872-93079372 3.42e-01 100 chr16:30874977-30875477 4.38e-01 100 chr10:117541472-11754197 1.61e-02 6_[-10(3.73e-05)]_64 chr6:79078056-79078556 4.40e-03 [+8(2.23e-06)]_78 chr20:52972214-52972714 6.20e-11 10_[-2(3.00e-12)]_15_[-9(1.51e-07)]_\ 28_[-9(1.16e-05)]_1 chr17:45148393-45148893 1.75e-01 100 chr19:37594249-37594749 1.25e-01 100 chrX:73944035-73944535 4.25e-01 100 chr19:1383510-1384010 5.50e-01 100 chr21:39313556-39314056 2.47e-01 66_[-8(1.76e-05)]_12 chr1:44213164-44213664 9.92e-01 100 chr12:54188168-54188668 4.56e-08 7_[+4(1.93e-06)]_14_[+6(3.47e-10)]_\ 8 chr19:39411901-39412401 8.69e-03 5_[-2(6.91e-06)]_9_[-10(3.94e-05)]_\ 34 chr19:17337039-17337539 8.14e-04 43_[+6(7.20e-07)]_[-5(3.60e-05)]_19 chr11:47578724-47579224 2.41e-01 33_[+8(1.13e-05)]_45 chrUn_KI270467v1:3122-36 1.38e-04 8_[+10(9.90e-07)]_7_[+1(6.48e-05)]_\ 7_[-10(2.89e-07)]_2 chr19:35947339-35947839 1.04e-07 58_[-2(4.80e-12)]_[-9(5.02e-08)]_8 chr12:12266976-12267476 1.75e-01 75_[+8(1.96e-05)]_3 chrUn_KI270467v1:2070-25 5.96e-04 29_[+10(1.64e-06)]_9_\ [+10(7.35e-07)]_2 chr19:36916386-36916886 1.89e-06 58_[-2(2.62e-10)]_20 chr10:93702413-93702913 4.69e-01 100 chr1:235688752-235689252 2.59e-21 10_[+6(1.34e-13)]_[-1(2.45e-11)]_2_\ [-1(2.45e-11)]_3_[+2(1.46e-09)]_9 chr6:131628047-131628547 7.83e-01 100 chr7:102572306-102572806 1.39e-01 14_[+8(5.52e-06)]_64 chr19:37655818-37656318 3.68e-02 71_[+8(1.76e-05)]_7 chr5:150459727-150460227 6.72e-09 74_[+1(2.04e-08)]_10 chr19:40556267-40556767 8.86e-10 11_[+10(2.89e-07)]_2_[+1(2.36e-10)]_\ 7_[+1(6.35e-07)]_18 chr1_KI270713v1_random:2 1.16e-14 13_[+9(5.43e-07)]_34_[+1(9.09e-11)]_\ 1_[-2(4.25e-09)]_2 chr6:24774894-24775394 7.81e-02 26_[-8(2.18e-05)]_52 chr19:37371123-37371623 4.24e-08 3_[-9(1.97e-05)]_54_[-2(3.45e-08)]_\ 9 chr12:8949986-8950486 1.93e-06 31_[-5(2.94e-05)]_21_[+1(3.92e-08)]_\ 16 chr19:44207464-44207964 1.12e-02 51_[-5(1.08e-05)]_33 chr1:241357387-241357887 4.44e-07 82_[+1(2.45e-11)]_2 chr12:117189352-11718985 1.38e-08 48_[-1(3.36e-10)]_36 chr1:183471815-183472315 3.88e-02 30_[+5(6.15e-06)]_11_[+5(4.09e-05)]_\ 27 chr19:35643410-35643910 2.40e-01 6_[+7(3.01e-05)]_51 chr12:47080555-47081055 5.65e-08 2_[+1(5.85e-07)]_5_[+8(3.78e-06)]_1_\ [-5(2.39e-08)]_11_[-5(1.62e-06)]_11 chr19:41310147-41310647 1.78e-02 21_[-8(3.29e-05)]_57 chrUn_KI270466v1:187-687 1.22e-04 16_[-10(7.81e-09)]_12_\ [-10(8.19e-08)]_12 chr1:37989799-37990299 5.60e-01 16_[-4(2.64e-05)]_35 chr19:36488967-36489467 4.66e-03 16_[+2(5.01e-06)]_9_[+2(1.82e-05)]_\ 31 chr15:65610888-65611388 6.13e-01 100 chr19:44164465-44164965 4.41e-04 14_[-10(1.73e-05)]_16_\ [+2(4.71e-07)]_18 chr1:63523036-63523536 5.59e-02 71_[-8(7.94e-06)]_7 chr2:235741461-235741961 5.75e-12 29_[+1(9.09e-11)]_1_[-2(1.87e-09)]_\ [+1(9.09e-11)]_[+1(5.10e-05)] chr10:23411313-23411813 2.60e-09 21_[+2(1.65e-09)]_4_[-1(2.45e-11)]_\ 37 chr6:41318730-41319230 7.20e-01 100 chr1:155244209-155244709 7.47e-07 1_[-1(9.09e-11)]_83 chr8:28514878-28515378 7.50e-07 52_[-10(6.90e-13)]_18 chrUn_KI270467v1:2907-34 1.29e-04 32_[-10(2.08e-07)]_8_[+1(3.81e-06)]_\ 14 chr12:1085293-1085793 1.26e-09 [-2(9.92e-05)]_29_[+1(1.25e-10)]_1_\ [-2(9.92e-05)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************