# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/RBAK.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/RBAK.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/RBAK.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/RBAK.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:13 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/RBAK.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:15 PST 2017) # host: kadru # when: Mon Dec 18 16:12:54 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.291 C 0.206 G 0.218 T 0.286 MOTIF RTAACAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RTAACAA TTGTTAY 254 22 3.2e-064 9.0e-060 # GTAACAA TTGTTAC 203 8 1.2e-058 3.4e-054 # ATAACAA TTGTTAT 58 14 3.5e-008 1.0e-003 letter-probability matrix: alength= 4 w= 7 nsites= 264 E= 9.0e-060 0.223485 0.000000 0.776515 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTRATACA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CTRATACA TGTATYAG 126 4 8.6e-036 2.4e-031 # CTGATACA TGTATCAG 96 2 2.9e-028 8.2e-024 # CTAATACA TGTATTAG 30 2 8.9e-008 2.5e-003 letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 2.4e-031 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.244094 0.000000 0.755906 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAATAAAT DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAATAAAT ATTTATTT 115 17 2.6e-021 7.4e-017 # AAATAAAT ATTTATTT 115 17 2.6e-021 7.4e-017 letter-probability matrix: alength= 4 w= 8 nsites= 513 E= 7.4e-017 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CAGCAD DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CAGCAD HTGCTG 253 118 1.6e-017 4.4e-013 # CAGCAA TTGCTG 116 53 1.0e-007 2.9e-003 # CAGCAT ATGCTG 80 33 2.1e-006 5.8e-002 # CAGCAG CTGCTG 93 44 5.5e-006 1.5e-001 letter-probability matrix: alength= 4 w= 6 nsites= 316 E= 4.4e-013 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.386076 0.000000 0.351266 0.262658 MOTIF CCCARA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCCARA TYTGGG 132 43 1.1e-013 2.9e-009 # CCCAAA TTTGGG 90 21 1.3e-012 3.6e-008 # CCCAGA TCTGGG 43 22 5.1e-003 1.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 140 E= 2.9e-009 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.671429 0.000000 0.328571 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGAGWCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TGAGWCA TGWCTCA 88 18 1.6e-013 4.3e-009 # TGAGTCA TGACTCA 48 7 3.2e-009 8.6e-005 # TGAGACA TGTCTCA 42 11 7.4e-006 2.0e-001 letter-probability matrix: alength= 4 w= 7 nsites= 119 E= 4.3e-009 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.361345 0.000000 0.000000 0.638655 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TAGCTRA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TAGCTRA TYAGCTA 61 12 8.4e-010 2.2e-005 # TAGCTAA TTAGCTA 31 4 1.3e-006 3.4e-002 # TAGCTGA TCAGCTA 31 8 1.2e-004 3.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 64 E= 2.2e-005 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGCRAGAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AGCRAGAC GTCTYGCT 25 0 2.3e-008 6.2e-004 # AGCAAGAC GTCTTGCT 14 0 5.7e-005 1.5e+000 # AGCGAGAC GTCTCGCT 11 0 4.7e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 6.2e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.576923 0.000000 0.423077 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGTGRC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CAGTGRC GYCACTG 46 8 3.7e-008 9.9e-004 # CAGTGGC GCCACTG 27 3 3.3e-006 8.9e-002 # CAGTGAC GTCACTG 19 5 3.0e-003 8.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 9.9e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.413043 0.000000 0.586957 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTCCASCC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CTCCASCC GGSTGGAG 28 2 3.3e-007 8.7e-003 # CTCCACCC GGGTGGAG 16 1 1.3e-004 3.3e+000 # CTCCAGCC GGCTGGAG 12 1 1.6e-003 4.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 8.7e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGGYGAC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GGGYGAC GTCRCCC 33 5 1.5e-006 4.1e-002 # GGGTGAC GTCACCC 23 4 1.3e-004 3.5e+000 # GGGCGAC GTCGCCC 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 35 E= 4.1e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 68.83 seconds