# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM6.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM6.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM6.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM6.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:14 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM6.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:15 PST 2017)
#        host: kadru
#        when: Mon Dec 18 16:12:47 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.316 C 0.186 G 0.187 T 0.311


MOTIF RTAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       RTAAA      TTTAY        484        339   7.8e-020   2.3e-015
#            GTAAA      TTTAC        286        160   3.1e-014   8.9e-010
#            ATAAA      TTTAT        367        239   9.2e-014   2.7e-009

letter-probability matrix: alength= 4 w= 5 nsites= 915 E= 2.3e-015
0.596721 0.000000 0.403279 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GRRAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GRRAAA     TTTYYC        297        197   2.9e-009   8.0e-005
#           GGAAAA     TTTTCC        120         64   4.6e-006   1.3e-001
#           GGGAAA     TTTCCC         65         32   3.2e-004   8.7e+000
#           GAGAAA     TTTCTC         94         55   4.2e-004   1.1e+001
#           GAAAAA     TTTTTC        146        108   4.4e-003   1.2e+002

letter-probability matrix: alength= 4 w= 6 nsites= 367 E= 8.0e-005
0.000000 0.000000 1.000000 0.000000
0.623978 0.000000 0.376022 0.000000
0.583106 0.000000 0.416894 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACTCAB DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACTCAB   VTGAGTCA         34          2   6.3e-009   1.7e-004
#         TGACTCAC   GTGAGTCA         13          0   1.1e-004   3.1e+000
#         TGACTCAT   ATGAGTCA         12          1   1.6e-003   4.4e+001
#         TGACTCAG   CTGAGTCA         10          1   5.7e-003   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.7e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.371429 0.285714 0.342857


# Stopping reason: E-value threshold exceeded
#    Running time: 25.06 seconds