# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 VYHRTAAAA MEME-1 VYHRTAAAA 3.2e-029 4.2e-032 -72.24 0.0 200 492 353 526 0.40650 1.7e-034 245 1 TGAGTCA MEME-5 TGAGTCA 9.5e-005 1.3e-007 -15.88 0.0 194 494 82 123 0.39271 5.2e-010 246 2 RTAAA DREME-1 RTAAA 5.4e-009 7.3e-012 -25.65 0.0 122 496 230 595 0.24597 2.9e-014 247 2 TGACTCAB DREME-3 TGACTCAB 2.1e-004 2.8e-007 -15.10 0.0 193 493 82 123 0.39148 1.1e-009 246 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 4.7e0000 6.3e-003 -5.07 0.0 243 491 326 561 0.49491 2.6e-005 245 3 M0633_1.02 DMRT2 KAATKTATWN 7.7e0000 1.0e-002 -4.58 0.0 29 491 59 573 0.05906 4.2e-005 245 3 M0718_1.02 FOXK1 DNRTMAACAH 2.8e-006 3.8e-009 -19.38 0.0 173 491 290 597 0.35234 1.6e-011 245 3 M0719_1.02 FOXG1 RTAAACAW 1.5e-006 2.0e-009 -20.04 0.0 173 493 287 589 0.35091 8.1e-012 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 2.4e-002 3.2e-005 -10.36 0.0 173 489 273 596 0.35378 1.3e-007 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 1.3e-004 1.8e-007 -15.55 0.0 127 493 221 595 0.25761 7.2e-010 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 6.6e-006 8.9e-009 -18.54 0.0 169 491 283 595 0.34420 3.6e-011 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 9.8e-006 1.3e-008 -18.14 0.0 169 491 283 598 0.34420 5.4e-011 245 3 M0892_1.02 EMX1 NYTAATKAVN 5.0e-002 6.6e-005 -9.62 0.0 217 491 319 583 0.44196 2.7e-007 245 3 M0894_1.02 LBX1 TTAATTAG 1.9e-004 2.5e-007 -15.19 0.0 163 493 261 578 0.33063 1.0e-009 246 3 M0896_1.02 VENTX TTAATTAG 4.1e-003 5.6e-006 -12.10 0.0 217 493 319 575 0.44016 2.3e-008 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 8.7e-026 1.2e-028 -64.32 0.0 215 491 399 592 0.43788 4.8e-031 245 3 M0900_1.02 SHOX HTAATTRV 2.2e-001 2.9e-004 -8.14 0.0 233 493 335 586 0.47262 1.2e-006 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.3e-007 1.8e-010 -22.45 0.0 212 492 305 520 0.43089 7.3e-013 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 3.7e-002 4.9e-005 -9.92 0.0 214 492 298 548 0.43496 2.0e-007 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 5.3e-001 7.1e-004 -7.25 0.0 207 493 266 511 0.41988 2.9e-006 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 2.5e-003 3.4e-006 -12.60 0.0 192 494 217 413 0.38866 1.4e-008 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 5.7e0000 7.7e-003 -4.87 0.0 260 492 356 582 0.52846 3.2e-005 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 1.6e-002 2.1e-005 -10.76 0.0 194 492 291 578 0.39431 8.7e-008 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 3.4e-005 4.5e-008 -16.91 0.0 214 492 331 585 0.43496 1.9e-010 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 1.3e-007 1.8e-010 -22.44 0.0 216 492 119 166 0.43902 7.3e-013 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.8e-005 2.4e-008 -17.55 0.0 140 492 221 532 0.28455 9.8e-011 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATTA 8.7e0000 1.2e-002 -4.46 0.0 211 493 212 402 0.42799 4.7e-005 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 1.4e-012 1.9e-015 -33.88 0.0 212 492 349 573 0.43089 7.9e-018 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTRD 6.3e0000 8.4e-003 -4.78 0.0 422 492 546 598 0.85772 3.5e-005 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 5.2e0000 7.0e-003 -4.96 0.0 198 492 265 541 0.40244 2.9e-005 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 2.1e-005 2.8e-008 -17.39 0.0 210 492 291 512 0.42683 1.1e-010 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 2.6e-005 3.5e-008 -17.15 0.0 197 493 295 552 0.39959 1.4e-010 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 7.7e-005 1.0e-007 -16.09 0.0 196 492 308 587 0.39837 4.2e-010 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 2.9e-024 3.9e-027 -60.80 0.0 217 491 396 588 0.44196 1.6e-029 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 1.0e-003 1.4e-006 -13.51 0.0 214 492 310 556 0.43496 5.5e-009 245 3 M1594_1.02 (SOX12)_(Mus_musculus)_(DBD_1.00) HWTTGTYNNN 5.4e0000 7.2e-003 -4.93 0.0 199 491 291 597 0.40530 3.0e-005 245 3 M1863_1.02 FOXD1 GTAAACAW 4.0e-001 5.4e-004 -7.53 0.0 173 493 252 567 0.35091 2.2e-006 246 3 M1970_1.02 NFIC TGCCAA 8.6e0000 1.2e-002 -4.46 0.0 395 495 515 599 0.79798 4.7e-005 247 3 M2267_1.02 CDX2 TTTTATKRCHB 7.1e-016 9.5e-019 -41.50 0.0 216 490 370 582 0.44082 3.9e-021 244 3 M2278_1.02 FOS DVTGASTCATB 6.2e-003 8.3e-006 -11.70 0.0 190 490 254 499 0.38776 3.4e-008 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 2.6e-001 3.5e-004 -7.97 0.0 214 486 317 589 0.44033 1.4e-006 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 1.1e-012 1.4e-015 -34.18 0.0 248 488 388 565 0.50820 5.9e-018 243 3 M2289_1.02 JUN DDRATGATGTMAT 1.4e0000 1.9e-003 -6.29 0.0 272 488 334 512 0.55738 7.6e-006 243 3 M2292_1.02 JUND DRTGASTCATS 1.9e-001 2.6e-004 -8.26 0.0 186 490 226 462 0.37959 1.1e-006 244 3 M2385_1.02 FOXP2 RWGTAAACAVR 7.8e-002 1.0e-004 -9.17 0.0 266 490 372 576 0.54286 4.3e-007 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 2.1e0000 2.8e-003 -5.88 0.0 296 486 391 562 0.60905 1.2e-005 242 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 5.2e-003 7.0e-006 -11.88 0.0 340 486 472 590 0.69959 2.9e-008 242 3 M4619_1.02 FOSL1 BGGTGASTCAT 3.1e0000 4.1e-003 -5.49 0.0 296 490 321 459 0.60408 1.7e-005 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 3.6e0000 4.9e-003 -5.33 0.0 364 486 402 485 0.74897 2.0e-005 242 3 M5284_1.02 ALX3 BNTAATTRRY 5.6e0000 7.4e-003 -4.90 0.0 217 491 304 578 0.44196 3.1e-005 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 9.6e-002 1.3e-004 -8.95 0.0 146 488 216 542 0.29918 5.3e-007 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 3.8e-001 5.1e-004 -7.58 0.0 251 487 173 263 0.51540 2.1e-006 243 3 M5294_1.02 BARHL2 NHTAAAYGNT 8.4e-002 1.1e-004 -9.09 0.0 119 491 198 594 0.24236 4.6e-007 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 1.1e-002 1.4e-005 -11.16 0.0 206 484 265 485 0.42562 5.9e-008 241 3 M5302_1.02 BATF3 TGATGACGTCATCA 7.9e-001 1.1e-003 -6.84 0.0 275 487 93 122 0.56468 4.4e-006 243 3 M5310_1.02 BSX NTAATBRS 4.3e-003 5.7e-006 -12.07 0.0 171 493 264 575 0.34686 2.3e-008 246 3 M5322_1.02 CPEB1 TTTTTATT 1.7e0000 2.3e-003 -6.09 0.0 169 493 255 595 0.34280 9.2e-006 246 3 M5339_1.02 DLX1 NNTAATTRNN 5.3e0000 7.1e-003 -4.95 0.0 233 491 321 574 0.47454 2.9e-005 245 3 M5342_1.02 DLX4 NTAATTRN 2.7e-001 3.7e-004 -7.91 0.0 209 493 308 592 0.42394 1.5e-006 246 3 M5343_1.02 DLX5 NTAATTRN 6.0e-002 8.1e-005 -9.42 0.0 233 493 336 583 0.47262 3.3e-007 246 3 M5344_1.02 DLX6 NTAATTRN 1.2e-001 1.6e-004 -8.73 0.0 233 493 338 589 0.47262 6.6e-007 246 3 M5348_1.02 DRGX NTAATYHAATTAN 3.0e-001 4.0e-004 -7.82 0.0 146 488 201 506 0.29918 1.6e-006 243 3 M5388_1.02 EMX2 NYTAATTAVB 1.9e-001 2.5e-004 -8.28 0.0 209 491 290 550 0.42566 1.0e-006 245 3 M5390_1.02 EN1 VBTAATTRSB 6.7e0000 8.9e-003 -4.72 0.0 217 491 303 577 0.44196 3.7e-005 245 3 M5394_1.02 EN2 NNTAATTRVD 3.1e0000 4.2e-003 -5.48 0.0 57 491 101 575 0.11609 1.7e-005 245 3 M5414_1.02 ESX1 DNTAATTRRN 1.4e-001 1.9e-004 -8.57 0.0 217 491 318 586 0.44196 7.7e-007 245 3 M5427_1.02 EVX1 SNTAATTABB 4.5e0000 6.0e-003 -5.12 0.0 211 491 297 577 0.42974 2.4e-005 245 3 M5428_1.02 EVX2 NNTAATKABB 7.7e0000 1.0e-002 -4.58 0.0 209 491 294 579 0.42566 4.2e-005 245 3 M5446_1.02 FOXD4L2 RTAAACA 1.5e-005 2.0e-008 -17.72 0.0 174 494 287 598 0.35223 8.2e-011 246 3 M5460_1.02 FOXL1 RTAAACA 1.8e-006 2.4e-009 -19.85 0.0 174 494 290 596 0.35223 9.8e-012 246 3 M5480_1.02 GBX1 RBTAATTRGB 3.2e0000 4.2e-003 -5.47 0.0 217 491 292 550 0.44196 1.7e-005 245 3 M5481_1.02 GBX2 NYTAATTRSB 3.9e0000 5.3e-003 -5.25 0.0 171 491 247 572 0.34827 2.2e-005 245 3 M5493_1.02 GMEB2 KTRCGTAA 1.1e0000 1.4e-003 -6.54 0.0 397 493 351 395 0.80527 5.9e-006 246 3 M5502_1.02 GSX1 NBTAATKRSN 6.6e-003 8.9e-006 -11.63 0.0 217 491 324 585 0.44196 3.6e-008 245 3 M5503_1.02 GSX2 DYTAATKRVN 1.7e-005 2.2e-008 -17.62 0.0 217 491 338 589 0.44196 9.1e-011 245 3 M5518_1.02 HMX1 NDTTAATTGNT 3.8e-005 5.1e-008 -16.78 0.0 196 490 314 595 0.40000 2.1e-010 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 3.8e-002 5.1e-005 -9.89 0.0 196 490 301 597 0.40000 2.1e-007 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 4.4e-003 6.0e-006 -12.03 0.0 174 490 277 596 0.35510 2.4e-008 244 3 M5530_1.02 HOMEZ TWTAATCGTTTT 2.1e0000 2.8e-003 -5.87 0.0 113 489 154 486 0.23108 1.2e-005 244 3 M5541_1.02 HOXB2 NNTAATKANN 7.9e-004 1.1e-006 -13.76 0.0 199 491 309 589 0.40530 4.3e-009 245 3 M5542_1.02 HOXB3 NYTAATKRNN 4.4e-002 5.9e-005 -9.73 0.0 319 491 440 589 0.64969 2.4e-007 245 3 M5543_1.02 HOXB5 NHTAATKRNN 1.6e-002 2.2e-005 -10.74 0.0 191 491 297 600 0.38900 8.9e-008 245 3 M5544_1.02 HOXC10 DTTTWATKDB 3.0e-013 4.1e-016 -35.44 0.0 189 491 336 597 0.38493 1.7e-018 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 5.3e-016 7.0e-019 -41.80 0.0 224 490 377 577 0.45714 2.9e-021 244 3 M5551_1.02 HOXC12 TTTTATTRC 6.5e-015 8.7e-018 -39.28 0.0 200 492 354 597 0.40650 3.6e-020 245 3 M5553_1.02 HOXC13 CYAATAAAAH 1.6e-013 2.2e-016 -36.07 0.0 189 491 334 592 0.38493 8.9e-019 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 1.8e-014 2.4e-017 -38.29 0.0 123 491 239 561 0.25051 9.6e-020 245 3 M5557_1.02 HOXD12 GTAATAAAA 2.5e-008 3.4e-011 -24.12 0.0 188 492 315 592 0.38211 1.4e-013 245 3 M5581_1.02 IRX2 CWTGTCRTGTWN 1.6e-002 2.1e-005 -10.78 0.0 277 489 390 579 0.56646 8.5e-008 244 3 M5582_1.02 IRX5 SWTGTYRTGTWN 4.2e-003 5.7e-006 -12.08 0.0 279 489 403 591 0.57055 2.3e-008 244 3 M5587_1.02 JDP2 ATGASTCAT 1.4e-002 1.9e-005 -10.87 0.0 304 492 334 454 0.61789 7.8e-008 245 3 M5602_1.02 LHX9 YTAATTRN 1.4e0000 1.9e-003 -6.28 0.0 219 493 315 589 0.44422 7.6e-006 246 3 M5604_1.02 LMX1A YTAATTAA 2.5e0000 3.3e-003 -5.72 0.0 195 493 275 569 0.39554 1.3e-005 246 3 M5605_1.02 LMX1B TTAATTRN 4.7e-004 6.3e-007 -14.28 0.0 195 493 300 581 0.39554 2.6e-009 246 3 M5623_1.02 MEOX1 VSTAATTAHC 1.7e-002 2.3e-005 -10.67 0.0 209 491 306 572 0.42566 9.4e-008 245 3 M5624_1.02 MEOX2 DSTAATTAWN 3.1e-004 4.1e-007 -14.70 0.0 195 491 305 588 0.39715 1.7e-009 245 3 M5631_1.02 MIXL1 NBTAATTRNN 1.8e0000 2.4e-003 -6.03 0.0 217 491 311 586 0.44196 9.9e-006 245 3 M5635_1.02 MNX1 TTTAATTRNH 1.2e-011 1.6e-014 -31.78 0.0 217 491 363 593 0.44196 6.4e-017 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 2.1e-001 2.8e-004 -8.17 0.0 177 483 214 449 0.36646 1.2e-006 241 3 M5662_1.02 NFIB TTGGCAHNDTGCCAR 9.7e0000 1.3e-002 -4.35 0.0 376 486 283 329 0.77366 5.4e-005 242 3 M5664_1.02 NFIX TTGGCANNNHGCCAR 3.2e0000 4.3e-003 -5.45 0.0 354 486 369 454 0.72840 1.8e-005 242 3 M5672_1.02 NOTO NBTAATTARN 2.7e0000 3.6e-003 -5.64 0.0 245 491 339 577 0.49898 1.5e-005 245 3 M5709_1.02 PAX7 WAATYRATTA 4.3e0000 5.7e-003 -5.16 0.0 141 491 150 389 0.28717 2.3e-005 245 3 M5714_1.02 PHOX2A TAATYYAATTA 5.2e0000 7.0e-003 -4.96 0.0 146 490 201 528 0.29796 2.9e-005 244 3 M5715_1.02 PHOX2B TAATYYAATTA 8.1e-001 1.1e-003 -6.82 0.0 146 490 208 535 0.29796 4.5e-006 244 3 M5746_1.02 POU6F2 WTAATKAGST 7.6e-001 1.0e-003 -6.88 0.0 263 491 355 564 0.53564 4.2e-006 245 3 M5771_1.02 RAX DYTAATTRRY 9.3e0000 1.2e-002 -4.39 0.0 233 491 323 581 0.47454 5.1e-005 245 3 M5772_1.02 RAX2 BTAATTRR 3.0e0000 4.0e-003 -5.52 0.0 217 493 310 589 0.44016 1.6e-005 246 3 M5807_1.02 SHOX2 YTAATTRR 2.2e0000 3.0e-003 -5.82 0.0 217 493 307 580 0.44016 1.2e-005 246 3 M5941_1.02 UNCX NTAATYBAATTAN 6.2e-001 8.3e-004 -7.10 0.0 228 488 322 572 0.46721 3.4e-006 243 3 M5944_1.02 VAX1 YTAATTAN 3.4e-004 4.5e-007 -14.61 0.0 197 493 304 583 0.39959 1.8e-009 246 3 M5945_1.02 VAX2 YTAATTAN 7.8e-005 1.0e-007 -16.08 0.0 171 493 274 580 0.34686 4.2e-010 246 3 M5949_1.02 VSX1 YTAATTAN 2.4e-001 3.2e-004 -8.05 0.0 249 493 347 574 0.50507 1.3e-006 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 2.4e-003 3.3e-006 -12.63 0.0 273 489 239 338 0.55828 1.3e-008 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 1.5e-007 2.0e-010 -22.32 0.0 169 491 290 596 0.34420 8.2e-013 245 3 M6157_1.02 BARX2 TYRWTAATKR 7.0e0000 9.4e-003 -4.67 0.0 223 491 308 572 0.45418 3.8e-005 245 3 M6167_1.02 CDX1 HCATAAAD 1.2e-006 1.7e-009 -20.21 0.0 191 493 313 596 0.38742 6.8e-012 246 3 M6189_1.02 DLX3 GMTAATTRSW 1.7e0000 2.3e-003 -6.09 0.0 209 491 286 552 0.42566 9.3e-006 245 3 M6228_1.02 FOSB CTGACTCAYV 2.2e0000 3.0e-003 -5.82 0.0 191 491 271 568 0.38900 1.2e-005 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 2.1e-004 2.8e-007 -15.10 0.0 170 488 277 591 0.34836 1.1e-009 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 1.8e-002 2.4e-005 -10.66 0.0 170 486 245 531 0.34979 9.7e-008 242 3 M6237_1.02 FOXD3 AAACAAACA 1.9e-001 2.6e-004 -8.25 0.0 176 492 268 591 0.35772 1.1e-006 245 3 M6238_1.02 FOXF1 WAAATAAACAW 2.3e-004 3.0e-007 -15.01 0.0 176 490 282 586 0.35918 1.2e-009 244 3 M6239_1.02 FOXF2 HWADGTAAACA 2.4e-004 3.2e-007 -14.96 0.0 208 490 322 587 0.42449 1.3e-009 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 4.1e-002 5.4e-005 -9.82 0.0 177 491 273 590 0.36049 2.2e-007 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 3.9e-001 5.2e-004 -7.55 0.0 160 488 241 573 0.32787 2.2e-006 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 1.1e0000 1.5e-003 -6.48 0.0 177 485 270 596 0.36495 6.3e-006 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 1.0e-002 1.4e-005 -11.18 0.0 192 488 299 595 0.39344 5.7e-008 243 3 M6247_1.02 FOXO4 MRTAAACAA 5.6e-002 7.5e-005 -9.50 0.0 156 492 247 594 0.31707 3.0e-007 245 3 M6249_1.02 FOXP3 AAWCAMATT 1.4e0000 1.9e-003 -6.29 0.0 268 492 375 592 0.54472 7.6e-006 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 2.2e0000 2.9e-003 -5.83 0.0 215 489 282 530 0.43967 1.2e-005 244 3 M6277_1.02 HLF SKRTTACRYAAYH 1.5e0000 1.9e-003 -6.24 0.0 224 488 267 477 0.45902 8.0e-006 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 6.1e-005 8.2e-008 -16.32 0.0 179 487 269 538 0.36756 3.4e-010 243 3 M6289_1.02 HOXA9 WCATAAAYYATH 1.1e-002 1.5e-005 -11.10 0.0 195 489 293 576 0.39877 6.2e-008 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 1.1e-007 1.5e-010 -22.60 0.0 194 490 320 591 0.39592 6.3e-013 244 3 M6292_1.02 HOXA5 CATTAATYAR 8.2e-001 1.1e-003 -6.82 0.0 121 491 184 554 0.24644 4.5e-006 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 6.6e0000 8.9e-003 -4.72 0.0 284 488 309 459 0.58197 3.7e-005 243 3 M6297_1.02 HOXB7 MATYAATCAA 2.1e-004 2.8e-007 -15.10 0.0 243 491 297 469 0.49491 1.1e-009 245 3 M6298_1.02 HOXB8 BMATTAATCAA 2.3e-003 3.1e-006 -12.68 0.0 202 490 259 480 0.41224 1.3e-008 244 3 M6301_1.02 HOXD10 AATTAAARCA 6.0e-001 8.1e-004 -7.12 0.0 183 491 277 596 0.37271 3.3e-006 245 3 M6303_1.02 HOXD4 TTAATTKW 1.5e0000 2.0e-003 -6.23 0.0 23 493 53 589 0.04665 8.1e-006 246 3 M6304_1.02 HOXD9 HMATNAAWYT 1.2e-004 1.6e-007 -15.66 0.0 205 491 324 597 0.41752 6.4e-010 245 3 M6315_1.02 ISL1 SYTAATR 1.7e-001 2.3e-004 -8.37 0.0 132 494 206 573 0.26721 9.4e-007 246 3 M6328_1.02 LHX2 YRSDTTYAATWAG 9.7e0000 1.3e-002 -4.35 0.0 190 488 262 555 0.38934 5.4e-005 243 3 M6333_1.02 MAFG HATGACT 4.4e-003 5.9e-006 -12.04 0.0 282 494 401 589 0.57085 2.4e-008 246 3 M6343_1.02 MEIS1 CDTWAAVCTGTCA 6.6e0000 8.8e-003 -4.73 0.0 264 488 354 567 0.54098 3.6e-005 243 3 M6350_1.02 MYB CMGTTRD 1.7e0000 2.3e-003 -6.09 0.0 356 494 463 580 0.72065 9.2e-006 246 3 M6357_1.02 NANOG KTTAATGG 2.5e-001 3.3e-004 -8.02 0.0 313 493 428 589 0.63489 1.3e-006 246 3 M6359_1.02 NFE2L1 NATGACD 3.0e-004 4.0e-007 -14.74 0.0 342 494 477 595 0.69231 1.6e-009 246 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 2.1e0000 2.8e-003 -5.87 0.0 39 487 62 440 0.08008 1.2e-005 243 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 4.6e-001 6.2e-004 -7.38 0.0 181 489 269 579 0.37014 2.6e-006 244 3 M6380_1.02 NOBOX HTAATTRSY 1.3e0000 1.8e-003 -6.32 0.0 258 492 353 573 0.52439 7.3e-006 245 3 M6415_1.02 PDX1 CTAATTACY 5.8e-005 7.8e-008 -16.37 0.0 196 492 286 539 0.39837 3.2e-010 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 9.7e-004 1.3e-006 -13.55 0.0 260 488 346 526 0.53279 5.4e-009 243 3 M6440_1.02 PRRX2 YTAATTR 8.5e-003 1.1e-005 -11.38 0.0 218 494 308 555 0.44130 4.6e-008 246 3 M6471_1.02 SOX13 YATTGTTY 7.0e-001 9.3e-004 -6.98 0.0 157 493 242 594 0.31846 3.8e-006 246 3 M6490_1.02 SRY DAAACAAWR 3.1e-001 4.1e-004 -7.79 0.0 178 492 272 597 0.36179 1.7e-006 245 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.5e0000 2.0e-003 -6.20 0.0 135 487 206 571 0.27721 8.3e-006 243 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).