# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-centered (Wed Dec 27 12:09:00 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus100bp.MemeChipResultsDefaultMax/seqs-shuffled (Wed Dec 27 12:09:00 PST 2017)
#        host: kadru
#        when: Wed Dec 27 12:25:10 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.257 C 0.242 G 0.247 T 0.254


MOTIF GTTTCW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTTTCW     WGAAAC        398         55   6.2e-101   2.0e-096
#           GTTTCA     TGAAAC        227         20   1.0e-055   3.3e-051
#           GTTTCT     AGAAAC        207         36   2.6e-037   8.4e-033

letter-probability matrix: alength= 4 w= 6 nsites= 502 E= 2.0e-096
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.517928 0.000000 0.000000 0.482072


MOTIF CTSGAAAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTSGAAAC   GTTTCSAG         58          3   4.5e-015   1.4e-010
#         CTGGAAAC   GTTTCCAG         44          3   6.0e-011   1.9e-006
#         CTCGAAAC   GTTTCGAG         14          0   5.7e-005   1.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 1.4e-010
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.268657 0.731343 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF RTAAAYA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     RTAAAYA    TRTTTAY         79         12   2.0e-014   6.2e-010
#          ATAAACA    TGTTTAT         32          3   1.5e-007   4.5e-003
#          GTAAACA    TGTTTAC         19          3   3.9e-004   1.2e+001
#          ATAAATA    TATTTAT         18          4   2.0e-003   6.2e+001
#          GTAAATA    TATTTAC         15          3   3.6e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 82 E= 6.2e-010
0.585366 0.000000 0.414634 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.621951 0.000000 0.378049
1.000000 0.000000 0.000000 0.000000


MOTIF GCTSCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GCTSCC     GGSAGC        119         59   6.8e-007   2.1e-002
#           GCTCCC     GGGAGC         68         27   7.3e-006   2.2e-001
#           GCTGCC     GGCAGC         61         33   1.8e-003   5.4e+001

letter-probability matrix: alength= 4 w= 6 nsites= 133 E= 2.1e-002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.541353 0.458647 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.45 seconds