******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:27800315-27800815 1.0000 100 chr21:31557556-31558056 1.0000 100 chr20:62386422-62386922 1.0000 100 chr8:142816933-142817433 1.0000 100 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chr16:87383801-87384301 1.0000 100 chr19:34999371-34999871 1.0000 100 chr12:130764505-13076500 1.0000 100 chr12:6829010-6829510 1.0000 100 chr6:3227056-3227556 1.0000 100 chr5:109409253-109409753 1.0000 100 chr17:76671125-76671625 1.0000 100 chr17:45148457-45148957 1.0000 100 chr12:580706-581206 1.0000 100 chr1:93078929-93079429 1.0000 100 chr15:74889935-74890435 1.0000 100 chr16:58392289-58392789 1.0000 100 chr1:29236975-29237475 1.0000 100 chr5:179678142-179678642 1.0000 100 chr12:570479-570979 1.0000 100 chr17:74872471-74872971 1.0000 100 chr21:32392464-32392964 1.0000 100 chr19:36772282-36772782 1.0000 100 chr1:182391385-182391885 1.0000 100 chr16:22297257-22297757 1.0000 100 chr1:228458210-228458710 1.0000 100 chr4:189234913-189235413 1.0000 100 chr17:81253420-81253920 1.0000 100 chr7:129054502-129055002 1.0000 100 chr15:65869675-65870175 1.0000 100 chr19:38800818-38801318 1.0000 100 chr19:39397430-39397930 1.0000 100 chr22:50675322-50675822 1.0000 100 chr16:30874970-30875470 1.0000 100 chr17:17693838-17694338 1.0000 100 chr19:33778321-33778821 1.0000 100 chr1:31413654-31414154 1.0000 100 chr8:27310676-27311176 1.0000 100 chr16:57628626-57629126 1.0000 100 chr1:229625052-229625552 1.0000 100 chr1:244451479-244451979 1.0000 100 chr15:75368347-75368847 1.0000 100 chr19:35557339-35557839 1.0000 100 chr16:2459405-2459905 1.0000 100 chr1:3321686-3322186 1.0000 100 chr17:42567142-42567642 1.0000 100 chr1:26788218-26788718 1.0000 100 chr8:37513911-37514411 1.0000 100 chr5:176591612-176592112 1.0000 100 chr14:19374373-19374873 1.0000 100 chr10:88880122-88880622 1.0000 100 chr21:36069965-36070465 1.0000 100 chr19:40349663-40350163 1.0000 100 chr17:58006925-58007425 1.0000 100 chr17:76736824-76737324 1.0000 100 chr19:39823962-39824462 1.0000 100 chr18:49019533-49020033 1.0000 100 chr1:8026665-8027165 1.0000 100 chr9:133030738-133031238 1.0000 100 chr18:63198247-63198747 1.0000 100 chr19:36488778-36489278 1.0000 100 chr12:5796193-5796693 1.0000 100 chr1:163321554-163322054 1.0000 100 chr10:93209012-93209512 1.0000 100 chr19:37371322-37371822 1.0000 100 chr1:225653510-225654010 1.0000 100 chr19:30435112-30435612 1.0000 100 chr17:40140253-40140753 1.0000 100 chr12:57111934-57112434 1.0000 100 chr1:92832044-92832544 1.0000 100 chr19:1383486-1383986 1.0000 100 chr21:36135193-36135693 1.0000 100 chr1:236097031-236097531 1.0000 100 chr18:50281096-50281596 1.0000 100 chr19:33273953-33274453 1.0000 100 chr16:1271720-1272220 1.0000 100 chr12:2255729-2256229 1.0000 100 chr8:28401254-28401754 1.0000 100 chr19:36214000-36214500 1.0000 100 chr4:49709150-49709650 1.0000 100 chrUn_GL000216v2:243-743 1.0000 100 chr19:2524521-2525021 1.0000 100 chr19:43640045-43640545 1.0000 100 chr17:78558266-78558766 1.0000 100 chrUn_KI270467v1:2090-25 1.0000 100 chrUn_KI270467v1:3138-36 1.0000 100 chrUn_KI270467v1:2926-34 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.193 C 0.307 G 0.307 T 0.193 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/PRDM2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.198 C 0.302 G 0.302 T 0.198 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGTGTGTGTGTGTGTG MEME-1 width = 22 sites = 102 llr = 1574 E-value = 3.8e-275 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::122:111111112:::::1 pos.-specific C 1:::2111::1:11211:1::: probability G 1928:6261818:8:619:a:9 matrix T 7181617171618:628:9:91 bits 2.3 2.1 1.9 * * 1.6 * *** Relative 1.4 * **** Entropy 1.2 ** * ****** (22.3 bits) 0.9 *** * * ** * * ****** 0.7 ***** * ******* ****** 0.5 ***** ********* ****** 0.2 ********************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:33273953-33274453 + 50 3.49e-14 GCTGAGTCtg tgtgtgtgtgtgtgtgtgtgtg cgtgcgtgtg chr12:57111934-57112434 - 14 3.49e-14 CGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TAGTCTTGTG chr17:76671125-76671625 + 70 3.49e-14 AAAGCAAGGg tgtgtgtgtgtgtgtgtgtgtg tgtCTTGGC chr16:981035-981535 + 48 3.49e-14 CGAGACGGGC tgtgtgtgtgtgtgtgtgtgtg agagagagag chr8:37701159-37701659 + 23 3.49e-14 AGACAGGGCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr7:100478129-100478629 + 23 3.49e-14 agagagagag tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr17:6069531-6070031 + 45 3.49e-14 GGTGATCCGg tgtgtgtgtgtgtgtgtgtgtg tgtgcgtgcg chr1:10793941-10794441 + 37 3.49e-14 tgtgtatgcg tgtgtgtgtgtgtgtgtgtgtg CGCGCGCGCG chr9:129607281-129607781 + 2 3.49e-14 g tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr16:323566-324066 - 13 3.49e-14 TTTGTTGGTG TGTGTGTGTGTGTGTGTGTGTG TGGTGGAGTC chr6:166008638-166009138 + 24 1.62e-13 CCGCACAgtg tgtgtgtatgtgtgtgtgtgtg agtgcgcgcg chr10:122703391-12270389 - 56 2.07e-13 TATATGTGTC TGTGTGTGTGTTTGTGTGTGTG TGTATATGTG chr12:580706-581206 + 49 1.32e-12 tgtgtattca tgtgtgtttgtgtgtatgtgtg tgtccatgtc chr16:75233826-75234326 - 72 3.46e-12 GTTCACG TGTGCTTGTGTGTGTGTGTGTG TCCACGTGTG chr8:37513911-37514411 - 14 1.30e-11 TGTGTGCATG TGTGTCTGTGTATGTGTGTGTG TGCATGTGTG chr12:6829010-6829510 + 62 1.30e-11 GGACGGGAAg tgtgcgtgggtgtgtgtgtgtg tcgggggtgg chr2:234969697-234970197 - 63 1.30e-11 TATGTGGGAG TGTGTGTGAGAGTGTGTGTGTG TGAGAGACAG chr12:5796193-5796693 - 40 1.81e-11 CAAGAGTGGG TGTGTGTGTGAGTGCATGTGTG TGAGTGTAAG chr19:39157985-39158485 + 31 2.12e-11 catgtgtggg tgtgcgtgtgtgtgcatgtgtg tgcGCGCATG chr19:12984352-12984852 + 4 3.39e-11 GAG TGTGTGTATGGGTGTATGTGTG TCTGTGATGG chr18:63198247-63198747 - 66 3.95e-11 TGTGTGTCAA TGTGTGTCTGTGTCTATGTGTG TCTGTGTGTC chr22:27093398-27093898 - 60 4.59e-11 GTGTATTGGG TGTGCATGTATGTGTGTGTGTG TTCTGTGTGA chr1:228781979-228782479 + 16 5.33e-11 ctgtgtgtgt agtgtgtgtgtgtgtgtgtgta gtctgtgtgt chr8:142816933-142817433 - 59 5.33e-11 AGTGCATGTC TGTGTGTGAGTGTGCATGTGTG GGAGTGTGTG chr15:70530162-70530662 - 60 7.16e-11 TGTGGCTGTG TGTGTCTGTGTGTCCGTGTGTG TGTCTGTGTG chr19:33249636-33250136 - 47 7.16e-11 GTGCGTGTGG TGTGTATCTATGTGTGTGTGTG GTGTGTGTGT chr7:100650171-100650671 - 51 8.35e-11 ACCGTGTGTT TGTGAGTGTGTTTGCATGTGTG ACCGTGAGTG chr12:6778630-6779130 - 79 1.33e-10 . TGTGTGTGTGTGTGCGTGTGCG CGCGCGCGTG chr17:15465225-15465725 - 17 1.54e-10 ATCTCCGTTA TGTGTGTCTGTGTGTTGGTGTG TCTGGTACTG chr17:82281389-82281889 + 15 2.05e-10 tgtccatatg tgtgcgtgtgtgcctgtgtgtg catgtgtgtc chr8:37785267-37785767 - 37 2.37e-10 TGTGTGTGTA TGTGTAGGTATGTGTATGTGTG TCTGTGTATG chr16:11171687-11172187 - 36 2.73e-10 CATGCACACT TGTATGTGTGAGTGTGTATGTG TACTGGTGTG chr16:57628626-57629126 + 67 4.12e-10 tgagagtgtg agtgtgtgagtgtgagtgtgtg agagtgagtg chr7:104932901-104933401 - 26 5.38e-10 TGTATATGCC TGTGTGTATGCGTGTGTGTATG CATGCATGTA chr19:38111784-38112284 - 14 5.38e-10 CATACGTGTG TGTGCATGTGTGTGCCTGTGTG CAGGTGTGTG chr19:30375663-30376163 + 7 1.18e-09 taggcg cgtgtgtgtgcgtgtgtgtgtt agggatacgt chr19:28427436-28427936 - 29 1.53e-09 GTGCTGCATG TGTGAGTCTGTGTGAGGGTGTG TGGCTCTGCA chrX:118218024-118218524 + 42 1.53e-09 tgtatgtgta tgtacgtgtgcgtatgtgtgtg catgtgtctg chr15:66932591-66933091 - 4 1.74e-09 TATGCATGTG TGTGAGCGTGTGTGAGCGTGTG CAT chr19:33778321-33778821 - 70 1.98e-09 GTGTGTGTC TGTGCGTCTGTGCCTGTGTGTG TGCATGCATT chr10:46525211-46525711 - 49 2.87e-09 GGGTGTATGT ATTGTGTGTGGTTGTGTGTGTG ATGTGTGTTT chr1:21651290-21651790 - 79 3.65e-09 . TGTTTCTGTGTCTGTGTGTGTT CCCATTGCGT chr17:44590595-44591095 + 7 4.63e-09 gtctag tgtgttcatgtgtgtttgtgta ttgtctagtg chr16:2027327-2027827 + 25 5.86e-09 tgcttttgcc tgggtgtgtgtgtacacgtgtg cgtgtgAACA chr1:27528322-27528822 + 51 5.86e-09 ACGAGCCCAA GGGGTGTGTGTGTGTCCGTGTG CGCGTCCATG chr6:150016345-150016845 - 31 1.04e-08 TTCTCCCATG TGTTTCTGTGTGTCTTTTTGTG TGCCCGTGTA chr8:28401254-28401754 + 9 1.17e-08 tatgtgtg ggtgcgcgagtgtgtatgtgtg tgacgcgtgt chr14:102776614-10277711 + 44 1.31e-08 gcgtgcgcac ggtgttggtgagcgtgtgtgtg cgtgtccgCT chr14:19374373-19374873 + 3 1.64e-08 TG TGTTCATGTGTGTGATGGTGTG TCCATGTGAC chr10:21173421-21173921 - 28 1.83e-08 AAGCAATGAG TGGGTCGGTGCGTGTGCGTGTG CCTTGGCACG chr19:37371322-37371822 + 31 2.27e-08 TGACATTGTG TGTTTGTGTAAATGCATGTGTG TGGTTATGTG chr18:49019533-49020033 + 49 2.27e-08 ggtatgtgag tgtgagtgaatgagagtgtgtg atgtggcgtg chr2:172098537-172099037 + 10 2.53e-08 AGTGTGTGA TGTGACGGTGTTCGAGTGTGTG TCATTGTGTG chr1:47591840-47592340 + 39 2.53e-08 gtgagtctga ggtgaaggtgagtgtgcgtgtg taactgtgtt chr9:135967494-135967994 + 79 3.13e-08 GGTGGGGGTG AGTGTGCAGGCgtgtgtgtgtg chr11:73376983-73377483 + 78 3.13e-08 gtggggtcaa gtggtgtcagtgtgtgtgtgtg t chr19:2524521-2525021 + 10 3.48e-08 CAGTGTGCA CGTGTGTATGTGCACGTGTGTG GACACGGCAC chr7:150003326-150003826 + 76 3.48e-08 gtgtgtggta tgttatctggtgtgtgtgtgtg tgg chr16:85522838-85523338 + 10 5.27e-08 tttgtgtgc tgtgtggctatgtgtgcatgtg actgtgttgt chr18:33577680-33578180 + 6 7.16e-08 GTGTG TGTGAGTGAGTGTGCACGCGTG AGCGCACAGG chr16:85245683-85246183 + 13 9.66e-08 tgtgtgcgtg tgtgtcgaggtgtctacgtgtg tgtggggagg chr2:241864216-241864716 + 18 1.07e-07 tgtgtgctgt gtgtactgtgtgtgtttgtgtg tgatatgtgt chr19:36214000-36214500 - 44 1.18e-07 CTCCAAGGTG TGTGCGTGGTTTTGGTTGTGTG ACACTGTGGC chr5:1929088-1929588 + 24 1.18e-07 atgtggcatg tttgttgtgttttgtgtgtgtg gtgtgtgttg chr3:14403086-14403586 + 64 1.43e-07 tccccgtttg tgtctgcatgaatctgtgtgtg GGGGGCTGCG chr19:37293451-37293951 - 16 1.57e-07 TTTCTGTCTC TGTCCGTCTGTGTGTGCGTGCG CCTTGGGACA chr5:171493868-171494368 - 61 1.73e-07 CAGGCATGTG TGTGTTGTGTGTTGTGTGTGTG TGCTCACAAG chr19:36528838-36529338 + 17 2.30e-07 TGTGTGACTG TGTAACGCTGTGTGAGGGTGTG GGTTAGCTGT chr15:70097501-70098001 - 78 3.03e-07 G CGTGCGCGCGTGTGTGTGTGTT GGGTGTGTGT chr1:3321686-3322186 + 7 3.64e-07 tgtgtt tgtgtttgtaggagcacgtgtg taaagggcac chr16:57802617-57803117 - 54 3.64e-07 GCGTGAGAAG TGTATGTGTGAGTACTCGCGTG GAAGTTTTGC chr8:28254105-28254605 - 2 4.77e-07 TAGGCACATG TGTACGTGTGGATGCATGTATG T chr18:33578952-33579452 + 45 7.40e-07 GCATGTGGGC TAGGTGGTTGCGTGTCTGTGTG CCATGTCGTG chr1:223558454-223558954 + 44 8.79e-07 acatggtgtg tgtgaatggtgtactgtgtgtg tactgtatga chr16:86932041-86932541 + 35 1.04e-06 gagtgtgaga tgtgtgtgtgaggtatggtgtg tgagatgtga chr5:10548560-10549060 + 35 1.23e-06 TTAGTGCATG TCGGCATGTGTTAGCATGTGTG TCGGCATGTG chr19:36686865-36687365 - 40 1.34e-06 GAGCCTTTTA GGTCTGTGGTGTTGTGTGTGTA ACGGGTAAAG chr1:228782288-228782788 + 71 1.71e-06 gtctgtatgt atggtctttgtgtgtgtgtggt ctgtgtgt chrX:153382858-153383358 - 65 2.18e-06 TGGGTTGTGT GGGGTGTGTTTTCGTGTGTGGT GTATGTGGTG chr12:132597532-13259803 + 22 2.36e-06 tctctgtgta tctctgtctctgtctttgtgtg tctctgtctc chr19:6229582-6230082 - 50 2.56e-06 GGTGTGTGGT GTGTCATGTGTATGTACGTGTG TTGTGTGTGG chr19:36849658-36850158 - 15 2.77e-06 AACCGCGTGC GGGTCAGATTGGTGTGTGTGTG AGAGAAGTGA chr1:29236975-29237475 + 76 3.23e-06 TTTTGAGATC CGTGTACATGTGTGAAGGCGTG GGA chr19:29715312-29715812 - 13 3.77e-06 GGGGCCCGGA TGTGATCATGCGTGCGCGTGGG AGAAAGGCAG chr22:50247612-50248112 - 18 3.77e-06 TGGGGCCGCA TCTACACCTGTGCCTGTGTGTG CCTGACCTGC chr1:8026665-8027165 + 4 4.39e-06 gtg tggaccggtgagcgactgtgtg ggacagtgcg chr16:86224535-86225035 + 31 5.11e-06 gtgttgctgt tgtttttggtagtgacggtgtt gctgttggtg chr6:38702509-38703009 - 18 5.92e-06 GCGACCCTGT TTTGAATTGGCTTGTTTATGTT GCGACGGTGG chr16:30065813-30066313 - 38 6.38e-06 TCAGGCTGGA GGGGCCGGGGAGCCTGTGTGTG CCTGGTAGTG chr18:2656035-2656535 + 1 8.53e-06 . CGGGATTTCGCGCGTGTGTGTG TCAGGTACGC chr12:5865357-5865857 - 69 1.06e-05 AATGCATGAT GGTGTGATGGTATGATGGTGTG ATGGCATGAT chr22:50675322-50675822 + 2 1.21e-05 t gggcagtgtgcgagcatgtgta gtgagcaggc chr19:37779124-37779624 - 5 1.21e-05 ACAGCAGAGG AGGGTATTTGAGTGCGCACGTG AGAG chr1:226309344-226309844 - 61 1.30e-05 TTTCGGGAAC TGTGAGTATTTCACTTTGCGTA GAGCCCCCTC chr5:856472-856972 - 43 1.39e-05 GTGTATTGTG TGTATTGTGTGGTCCCTGTGTG GTATGGGGAG chr16:68264650-68265150 + 32 2.23e-05 ACGCGGCGAG TGTGAGGGAGACCGGGGGTGTG TGTGGAGAGG chr4:189234913-189235413 + 59 3.51e-05 GTGGTGGTGT TTGGTGTAGTTGCATTTGTGCT CTGTGGTGGT chr1:40783172-40783672 - 35 3.74e-05 TGTAGACCGG TGGAACGGCGTCTACTTGTGTG TGCAGGGTGG chr3:12841172-12841672 - 11 3.74e-05 TCAGCGCGGT AGTGTCTGTGGGTATTGTTATT GTCAGCTTAC chr16:31179920-31180420 + 70 6.88e-05 TCGTTGCTTG CTTGCCTGTGCGCGCGTGCGCG GACATGGCC chrUn_KI270467v1:2926-34 + 72 1.15e-04 ttttatgtac agtatataatatttattttgtg tcctttg chr10:102394507-10239500 - 57 2.98e-04 CACAGGTACA GGTGTACGTACGGGTCCGCGTA TCTTTGTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:33273953-33274453 3.5e-14 49_[+1]_29 chr12:57111934-57112434 3.5e-14 13_[-1]_65 chr17:76671125-76671625 3.5e-14 69_[+1]_9 chr16:981035-981535 3.5e-14 47_[+1]_31 chr8:37701159-37701659 3.5e-14 22_[+1]_56 chr7:100478129-100478629 3.5e-14 22_[+1]_56 chr17:6069531-6070031 3.5e-14 44_[+1]_34 chr1:10793941-10794441 3.5e-14 36_[+1]_42 chr9:129607281-129607781 3.5e-14 1_[+1]_77 chr16:323566-324066 3.5e-14 12_[-1]_66 chr6:166008638-166009138 1.6e-13 23_[+1]_55 chr10:122703391-12270389 2.1e-13 55_[-1]_23 chr12:580706-581206 1.3e-12 48_[+1]_30 chr16:75233826-75234326 3.5e-12 71_[-1]_7 chr8:37513911-37514411 1.3e-11 13_[-1]_65 chr12:6829010-6829510 1.3e-11 61_[+1]_17 chr2:234969697-234970197 1.3e-11 62_[-1]_16 chr12:5796193-5796693 1.8e-11 39_[-1]_39 chr19:39157985-39158485 2.1e-11 30_[+1]_48 chr19:12984352-12984852 3.4e-11 3_[+1]_75 chr18:63198247-63198747 3.9e-11 65_[-1]_13 chr22:27093398-27093898 4.6e-11 59_[-1]_19 chr1:228781979-228782479 5.3e-11 15_[+1]_63 chr8:142816933-142817433 5.3e-11 58_[-1]_20 chr15:70530162-70530662 7.2e-11 59_[-1]_19 chr19:33249636-33250136 7.2e-11 46_[-1]_32 chr7:100650171-100650671 8.4e-11 50_[-1]_28 chr12:6778630-6779130 1.3e-10 78_[-1] chr17:15465225-15465725 1.5e-10 16_[-1]_62 chr17:82281389-82281889 2.1e-10 14_[+1]_64 chr8:37785267-37785767 2.4e-10 36_[-1]_42 chr16:11171687-11172187 2.7e-10 35_[-1]_43 chr16:57628626-57629126 4.1e-10 66_[+1]_12 chr7:104932901-104933401 5.4e-10 25_[-1]_53 chr19:38111784-38112284 5.4e-10 13_[-1]_65 chr19:30375663-30376163 1.2e-09 6_[+1]_72 chr19:28427436-28427936 1.5e-09 28_[-1]_50 chrX:118218024-118218524 1.5e-09 41_[+1]_37 chr15:66932591-66933091 1.7e-09 3_[-1]_75 chr19:33778321-33778821 2e-09 69_[-1]_9 chr10:46525211-46525711 2.9e-09 48_[-1]_30 chr1:21651290-21651790 3.7e-09 78_[-1] chr17:44590595-44591095 4.6e-09 6_[+1]_72 chr16:2027327-2027827 5.9e-09 24_[+1]_54 chr1:27528322-27528822 5.9e-09 50_[+1]_28 chr6:150016345-150016845 1e-08 30_[-1]_48 chr8:28401254-28401754 1.2e-08 8_[+1]_70 chr14:102776614-10277711 1.3e-08 43_[+1]_35 chr14:19374373-19374873 1.6e-08 2_[+1]_76 chr10:21173421-21173921 1.8e-08 27_[-1]_51 chr19:37371322-37371822 2.3e-08 30_[+1]_48 chr18:49019533-49020033 2.3e-08 48_[+1]_30 chr2:172098537-172099037 2.5e-08 9_[+1]_69 chr1:47591840-47592340 2.5e-08 38_[+1]_40 chr9:135967494-135967994 3.1e-08 78_[+1] chr11:73376983-73377483 3.1e-08 77_[+1]_1 chr19:2524521-2525021 3.5e-08 9_[+1]_69 chr7:150003326-150003826 3.5e-08 75_[+1]_3 chr16:85522838-85523338 5.3e-08 9_[+1]_69 chr18:33577680-33578180 7.2e-08 5_[+1]_73 chr16:85245683-85246183 9.7e-08 12_[+1]_66 chr2:241864216-241864716 1.1e-07 17_[+1]_61 chr19:36214000-36214500 1.2e-07 43_[-1]_35 chr5:1929088-1929588 1.2e-07 23_[+1]_55 chr3:14403086-14403586 1.4e-07 63_[+1]_15 chr19:37293451-37293951 1.6e-07 15_[-1]_63 chr5:171493868-171494368 1.7e-07 60_[-1]_18 chr19:36528838-36529338 2.3e-07 16_[+1]_62 chr15:70097501-70098001 3e-07 77_[-1]_1 chr1:3321686-3322186 3.6e-07 6_[+1]_72 chr16:57802617-57803117 3.6e-07 53_[-1]_25 chr8:28254105-28254605 4.8e-07 1_[-1]_77 chr18:33578952-33579452 7.4e-07 44_[+1]_34 chr1:223558454-223558954 8.8e-07 43_[+1]_35 chr16:86932041-86932541 1e-06 34_[+1]_44 chr5:10548560-10549060 1.2e-06 34_[+1]_44 chr19:36686865-36687365 1.3e-06 39_[-1]_39 chr1:228782288-228782788 1.7e-06 70_[+1]_8 chrX:153382858-153383358 2.2e-06 64_[-1]_14 chr12:132597532-13259803 2.4e-06 21_[+1]_57 chr19:6229582-6230082 2.6e-06 49_[-1]_29 chr19:36849658-36850158 2.8e-06 14_[-1]_64 chr1:29236975-29237475 3.2e-06 75_[+1]_3 chr19:29715312-29715812 3.8e-06 12_[-1]_66 chr22:50247612-50248112 3.8e-06 17_[-1]_61 chr1:8026665-8027165 4.4e-06 3_[+1]_75 chr16:86224535-86225035 5.1e-06 30_[+1]_48 chr6:38702509-38703009 5.9e-06 17_[-1]_61 chr16:30065813-30066313 6.4e-06 37_[-1]_41 chr18:2656035-2656535 8.5e-06 [+1]_78 chr12:5865357-5865857 1.1e-05 68_[-1]_10 chr22:50675322-50675822 1.2e-05 1_[+1]_77 chr19:37779124-37779624 1.2e-05 4_[-1]_74 chr1:226309344-226309844 1.3e-05 60_[-1]_18 chr5:856472-856972 1.4e-05 42_[-1]_36 chr16:68264650-68265150 2.2e-05 31_[+1]_47 chr4:189234913-189235413 3.5e-05 58_[+1]_20 chr1:40783172-40783672 3.7e-05 34_[-1]_44 chr3:12841172-12841672 3.7e-05 10_[-1]_68 chr16:31179920-31180420 6.9e-05 69_[+1]_9 chrUn_KI270467v1:2926-34 0.00012 71_[+1]_7 chr10:102394507-10239500 0.0003 56_[-1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGTGTGTGTGTGTGTG width=22 seqs=102 chr19:33273953-33274453 ( 50) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111934-57112434 ( 14) TGTGTGTGTGTGTGTGTGTGTG 1 chr17:76671125-76671625 ( 70) TGTGTGTGTGTGTGTGTGTGTG 1 chr16:981035-981535 ( 48) TGTGTGTGTGTGTGTGTGTGTG 1 chr8:37701159-37701659 ( 23) TGTGTGTGTGTGTGTGTGTGTG 1 chr7:100478129-100478629 ( 23) TGTGTGTGTGTGTGTGTGTGTG 1 chr17:6069531-6070031 ( 45) TGTGTGTGTGTGTGTGTGTGTG 1 chr1:10793941-10794441 ( 37) TGTGTGTGTGTGTGTGTGTGTG 1 chr9:129607281-129607781 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr16:323566-324066 ( 13) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:166008638-166009138 ( 24) TGTGTGTATGTGTGTGTGTGTG 1 chr10:122703391-12270389 ( 56) TGTGTGTGTGTTTGTGTGTGTG 1 chr12:580706-581206 ( 49) TGTGTGTTTGTGTGTATGTGTG 1 chr16:75233826-75234326 ( 72) TGTGCTTGTGTGTGTGTGTGTG 1 chr8:37513911-37514411 ( 14) TGTGTCTGTGTATGTGTGTGTG 1 chr12:6829010-6829510 ( 62) TGTGCGTGGGTGTGTGTGTGTG 1 chr2:234969697-234970197 ( 63) TGTGTGTGAGAGTGTGTGTGTG 1 chr12:5796193-5796693 ( 40) TGTGTGTGTGAGTGCATGTGTG 1 chr19:39157985-39158485 ( 31) TGTGCGTGTGTGTGCATGTGTG 1 chr19:12984352-12984852 ( 4) TGTGTGTATGGGTGTATGTGTG 1 chr18:63198247-63198747 ( 66) TGTGTGTCTGTGTCTATGTGTG 1 chr22:27093398-27093898 ( 60) TGTGCATGTATGTGTGTGTGTG 1 chr1:228781979-228782479 ( 16) AGTGTGTGTGTGTGTGTGTGTA 1 chr8:142816933-142817433 ( 59) TGTGTGTGAGTGTGCATGTGTG 1 chr15:70530162-70530662 ( 60) TGTGTCTGTGTGTCCGTGTGTG 1 chr19:33249636-33250136 ( 47) TGTGTATCTATGTGTGTGTGTG 1 chr7:100650171-100650671 ( 51) TGTGAGTGTGTTTGCATGTGTG 1 chr12:6778630-6779130 ( 79) TGTGTGTGTGTGTGCGTGTGCG 1 chr17:15465225-15465725 ( 17) TGTGTGTCTGTGTGTTGGTGTG 1 chr17:82281389-82281889 ( 15) TGTGCGTGTGTGCCTGTGTGTG 1 chr8:37785267-37785767 ( 37) TGTGTAGGTATGTGTATGTGTG 1 chr16:11171687-11172187 ( 36) TGTATGTGTGAGTGTGTATGTG 1 chr16:57628626-57629126 ( 67) AGTGTGTGAGTGTGAGTGTGTG 1 chr7:104932901-104933401 ( 26) TGTGTGTATGCGTGTGTGTATG 1 chr19:38111784-38112284 ( 14) TGTGCATGTGTGTGCCTGTGTG 1 chr19:30375663-30376163 ( 7) CGTGTGTGTGCGTGTGTGTGTT 1 chr19:28427436-28427936 ( 29) TGTGAGTCTGTGTGAGGGTGTG 1 chrX:118218024-118218524 ( 42) TGTACGTGTGCGTATGTGTGTG 1 chr15:66932591-66933091 ( 4) TGTGAGCGTGTGTGAGCGTGTG 1 chr19:33778321-33778821 ( 70) TGTGCGTCTGTGCCTGTGTGTG 1 chr10:46525211-46525711 ( 49) ATTGTGTGTGGTTGTGTGTGTG 1 chr1:21651290-21651790 ( 79) TGTTTCTGTGTCTGTGTGTGTT 1 chr17:44590595-44591095 ( 7) TGTGTTCATGTGTGTTTGTGTA 1 chr16:2027327-2027827 ( 25) TGGGTGTGTGTGTACACGTGTG 1 chr1:27528322-27528822 ( 51) GGGGTGTGTGTGTGTCCGTGTG 1 chr6:150016345-150016845 ( 31) TGTTTCTGTGTGTCTTTTTGTG 1 chr8:28401254-28401754 ( 9) GGTGCGCGAGTGTGTATGTGTG 1 chr14:102776614-10277711 ( 44) GGTGTTGGTGAGCGTGTGTGTG 1 chr14:19374373-19374873 ( 3) TGTTCATGTGTGTGATGGTGTG 1 chr10:21173421-21173921 ( 28) TGGGTCGGTGCGTGTGCGTGTG 1 chr19:37371322-37371822 ( 31) TGTTTGTGTAAATGCATGTGTG 1 chr18:49019533-49020033 ( 49) TGTGAGTGAATGAGAGTGTGTG 1 chr2:172098537-172099037 ( 10) TGTGACGGTGTTCGAGTGTGTG 1 chr1:47591840-47592340 ( 39) GGTGAAGGTGAGTGTGCGTGTG 1 chr9:135967494-135967994 ( 79) AGTGTGCAGGCGTGTGTGTGTG 1 chr11:73376983-73377483 ( 78) GTGGTGTCAGTGTGTGTGTGTG 1 chr19:2524521-2525021 ( 10) CGTGTGTATGTGCACGTGTGTG 1 chr7:150003326-150003826 ( 76) TGTTATCTGGTGTGTGTGTGTG 1 chr16:85522838-85523338 ( 10) TGTGTGGCTATGTGTGCATGTG 1 chr18:33577680-33578180 ( 6) TGTGAGTGAGTGTGCACGCGTG 1 chr16:85245683-85246183 ( 13) TGTGTCGAGGTGTCTACGTGTG 1 chr2:241864216-241864716 ( 18) GTGTACTGTGTGTGTTTGTGTG 1 chr19:36214000-36214500 ( 44) TGTGCGTGGTTTTGGTTGTGTG 1 chr5:1929088-1929588 ( 24) TTTGTTGTGTTTTGTGTGTGTG 1 chr3:14403086-14403586 ( 64) TGTCTGCATGAATCTGTGTGTG 1 chr19:37293451-37293951 ( 16) TGTCCGTCTGTGTGTGCGTGCG 1 chr5:171493868-171494368 ( 61) TGTGTTGTGTGTTGTGTGTGTG 1 chr19:36528838-36529338 ( 17) TGTAACGCTGTGTGAGGGTGTG 1 chr15:70097501-70098001 ( 78) CGTGCGCGCGTGTGTGTGTGTT 1 chr1:3321686-3322186 ( 7) TGTGTTTGTAGGAGCACGTGTG 1 chr16:57802617-57803117 ( 54) TGTATGTGTGAGTACTCGCGTG 1 chr8:28254105-28254605 ( 2) TGTACGTGTGGATGCATGTATG 1 chr18:33578952-33579452 ( 45) TAGGTGGTTGCGTGTCTGTGTG 1 chr1:223558454-223558954 ( 44) TGTGAATGGTGTACTGTGTGTG 1 chr16:86932041-86932541 ( 35) TGTGTGTGTGAGGTATGGTGTG 1 chr5:10548560-10549060 ( 35) TCGGCATGTGTTAGCATGTGTG 1 chr19:36686865-36687365 ( 40) GGTCTGTGGTGTTGTGTGTGTA 1 chr1:228782288-228782788 ( 71) ATGGTCTTTGTGTGTGTGTGGT 1 chrX:153382858-153383358 ( 65) GGGGTGTGTTTTCGTGTGTGGT 1 chr12:132597532-13259803 ( 22) TCTCTGTCTCTGTCTTTGTGTG 1 chr19:6229582-6230082 ( 50) GTGTCATGTGTATGTACGTGTG 1 chr19:36849658-36850158 ( 15) GGGTCAGATTGGTGTGTGTGTG 1 chr1:29236975-29237475 ( 76) CGTGTACATGTGTGAAGGCGTG 1 chr19:29715312-29715812 ( 13) TGTGATCATGCGTGCGCGTGGG 1 chr22:50247612-50248112 ( 18) TCTACACCTGTGCCTGTGTGTG 1 chr1:8026665-8027165 ( 4) TGGACCGGTGAGCGACTGTGTG 1 chr16:86224535-86225035 ( 31) TGTTTTTGGTAGTGACGGTGTT 1 chr6:38702509-38703009 ( 18) TTTGAATTGGCTTGTTTATGTT 1 chr16:30065813-30066313 ( 38) GGGGCCGGGGAGCCTGTGTGTG 1 chr18:2656035-2656535 ( 1) CGGGATTTCGCGCGTGTGTGTG 1 chr12:5865357-5865857 ( 69) GGTGTGATGGTATGATGGTGTG 1 chr22:50675322-50675822 ( 2) GGGCAGTGTGCGAGCATGTGTA 1 chr19:37779124-37779624 ( 5) AGGGTATTTGAGTGCGCACGTG 1 chr1:226309344-226309844 ( 61) TGTGAGTATTTCACTTTGCGTA 1 chr5:856472-856972 ( 43) TGTATTGTGTGGTCCCTGTGTG 1 chr16:68264650-68265150 ( 32) TGTGAGGGAGACCGGGGGTGTG 1 chr4:189234913-189235413 ( 59) TTGGTGTAGTTGCATTTGTGCT 1 chr1:40783172-40783672 ( 35) TGGAACGGCGTCTACTTGTGTG 1 chr3:12841172-12841672 ( 11) AGTGTCTGTGGGTATTGTTATT 1 chr16:31179920-31180420 ( 70) CTTGCCTGTGCGCGCGTGCGCG 1 chrUn_KI270467v1:2926-34 ( 72) AGTATATAATATTTATTTTGTG 1 chr10:102394507-10239500 ( 57) GGTGTACGTACGGGTCCGCGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 8.58869 E= 3.8e-275 -133 -236 -114 188 -433 -336 153 -116 -1332 -1332 -78 206 -101 -262 134 -116 -16 -55 -1332 164 -33 -104 96 -87 -433 -149 -86 186 -53 -149 110 -87 -116 -336 -104 189 -133 -494 139 -75 -43 -136 -162 169 -175 -295 136 -63 -175 -125 -394 201 -153 -125 138 -333 -63 -55 -394 171 -9 -214 96 -33 -1332 -104 -162 193 -233 -1332 162 -275 -1332 -214 -1332 224 -275 -1332 168 -1332 -1332 -295 -336 224 -175 -1332 150 -116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 102 E= 3.8e-275 0.078431 0.058824 0.137255 0.725490 0.009804 0.029412 0.872549 0.088235 0.000000 0.000000 0.176471 0.823529 0.098039 0.049020 0.764706 0.088235 0.176471 0.205882 0.000000 0.617647 0.156863 0.147059 0.588235 0.107843 0.009804 0.107843 0.166667 0.715686 0.137255 0.107843 0.647059 0.107843 0.088235 0.029412 0.147059 0.735294 0.078431 0.009804 0.794118 0.117647 0.147059 0.117647 0.098039 0.637255 0.058824 0.039216 0.774510 0.127451 0.058824 0.127451 0.019608 0.794118 0.068627 0.127451 0.784314 0.019608 0.127451 0.205882 0.019608 0.647059 0.186275 0.068627 0.588235 0.156863 0.000000 0.147059 0.098039 0.754902 0.039216 0.000000 0.931373 0.029412 0.000000 0.068627 0.000000 0.931373 0.029412 0.000000 0.970588 0.000000 0.000000 0.039216 0.029412 0.931373 0.058824 0.000000 0.852941 0.088235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- TGTG[TC]GTGTGTGTG[TC]GTGTGTG -------------------------------------------------------------------------------- Time 494.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CACASACACACANRCACACRCA MEME-2 width = 22 sites = 65 llr = 953 E-value = 9.9e-124 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:9:7171627241a:a:518 pos.-specific C 8:8:5171617:318:9:7:81 probability G 1::1311:22::231::::3:: matrix T 1:2:21112112221:1:311: bits 2.3 * * 2.1 * * * 1.9 * * * 1.6 * * * * Relative 1.4 * * * * Entropy 1.2 * * * *** * (21.2 bits) 0.9 * * * * * **** ** 0.7 **** *** *** ******** 0.5 **** *** *** ******** 0.2 ************ ********* 0.0 ---------------------- Multilevel CACACACACACACACACACACA consensus G G TGG TG sequence TT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr8:37701159-37701659 - 51 8.08e-14 CACACACACA CACACACACACAAACACACACA CACACACACA chr7:100478129-100478629 - 45 8.08e-14 GTTTCACACA CACACACACACACACACACACA CACACACACA chr6:166008638-166009138 - 78 1.76e-12 G CACATACACACATGCACACACA GGCACATGCA chr12:580706-581206 - 19 4.42e-12 CATGAATACA CACAGACACACAGGCACACACA CACAAACATA chr8:37513911-37514411 + 60 1.00e-11 cagagataca cacagatacacagacacacaca gagacacaca chr10:122703391-12270389 + 18 2.20e-11 tacacaaatg catacatacacatacacataca tatacacaca chr15:66932591-66933091 + 50 4.52e-11 cacacatgct cacacacatgcattcacacaca tggtcacaca chr1:10793941-10794441 - 9 6.38e-11 CACACGCATA CACATACAAACACGCACACACA CGCGCACA chr17:15465225-15465725 + 65 7.58e-11 caacaccaga catacaaacacagacacacaca acacagaccc chr18:63198247-63198747 + 42 1.25e-10 cagagacaca cacagacacacattgacacaca gacacacata chr19:33273953-33274453 - 74 1.72e-10 CACCC CACACCCACACAGACACACGCA CGCACACACA chr8:37785267-37785767 + 59 3.73e-10 tacctacaca tacacacacatatgcacataca caCACATACT chr7:100650171-100650671 + 4 3.73e-10 aga cacacataaacacacacatgca ttcacactat chr7:104932901-104933401 + 74 5.02e-10 catgcacatg cacacatatacacatacacgca tacat chr19:33249636-33250136 + 13 5.02e-10 acacaccaca cacagacacacagatacacacc tcacacacac chr17:82281389-82281889 - 65 5.81e-10 CACAGGAACA CACAGGCACACATGCACACATA CGGACATAGG chr8:142816933-142817433 + 33 7.75e-10 cttacacaag cacatgcacacatgtacacaca ctcccacaca chrX:118218024-118218524 - 18 8.93e-10 CACGTACATA CACATACATGCACACATACACA CCCCCCATAT chr12:5796193-5796693 + 72 1.18e-09 cccactcttg cacatacacacacacaaactca caacaca chr2:234969697-234970197 + 23 1.35e-09 cactctgtca cacacacacatttgcatacaca cacactccct chr16:57628626-57629126 - 21 3.01e-09 CTCACGCTCA CACACTCACACTCTCACACTCA CACTATTCCC chr19:38111784-38112284 + 69 3.88e-09 tccacacatg cacacacacgtatgcacacacc atgcgtccgc chr15:70530162-70530662 + 27 6.38e-09 aacacacact cacagacacacagatacacaac acacacagac chr12:6778630-6779130 + 53 8.13e-09 cgcacgtgca cacacacatgcacacacacgcg cgcgcgcaca chr2:172098537-172099037 - 64 1.03e-08 CATACTGATA CACACTCTCACAGTCACACTCA TGCTCAAATA chr16:85522838-85523338 - 63 1.16e-08 ACACAGGCCA CACACAACCACAACCACACGCA CACAACACAC chr17:44590595-44591095 - 35 1.84e-08 CACTAGACAC AATACACACACATGCACACACT AGACAATACA chr16:75233826-75234326 + 48 2.06e-08 cacgtggacg cacacacacactagcacacgtg gacacacaca chr6:150016345-150016845 + 3 2.57e-08 ta cagacacagccatgcacataca cgggcacaca chr18:49019533-49020033 - 79 3.97e-08 . CACATGCTCATTCACACACGCA CGCCACATCA chr19:12984352-12984852 - 52 3.97e-08 ACAACATTCA CACAAACTCACAATCACACCCA ACAACACAGC chr8:28254105-28254605 + 42 4.41e-08 tatgcacata aacatgcatgcatgcaCACACA CGATTCCCTA chr19:30375663-30376163 - 60 4.90e-08 AACACACGTG CACAGGCACATGAGCACACACA GTCACACTAA chr16:11171687-11172187 + 68 5.44e-08 agtgtgcatg catagtcacactcccacacata cacaatcaca chr1:21651290-21651790 + 52 6.03e-08 CTCACCTCCC cacacatgcacatggacacgca atgggaacac chr19:36528838-36529338 - 67 6.03e-08 AACATATGGT CACAGAGTTACAATCACACACC CACCGCGGGC chr19:2524521-2525021 - 74 7.41e-08 GCATG CACACACCCATAGTGACATGCA TGCCCACACA chr19:39157985-39158485 - 9 7.41e-08 CACACGCACA CCCACACATGCACATACATGCA CGCTCACA chr19:36214000-36214500 + 2 1.48e-07 C CAcacagtcacaggcacaggca attgcacacg chr5:10548560-10549060 - 59 1.63e-07 AACACATGCC GACACACATGCTAACACATGCC GACACACATG chr1:47591840-47592340 - 77 1.79e-07 CT CACAGACCCACACGCACATTAC ACACACAACA chr9:129607281-129607781 - 24 2.60e-07 GTTCGCCTAG CCAAGATAGACACACACACACA CACACACACA chr8:28401254-28401754 - 42 2.85e-07 CGAGTGCACT CACACGTGCGCATACACACGTA CACACGCGTC chr19:36488778-36489278 + 79 4.46e-07 tgtaccgggt cacagtcacgatcacacattaa chr19:33778321-33778821 + 44 4.46e-07 aacacgaacg cacacgcgcaaacacaaatgca tgcacacaca chr1:3321686-3322186 - 65 5.30e-07 CCCACACAAA TATACAGTCTCATGTACATACA TGCATGCCAA chr14:102776614-10277711 - 3 5.78e-07 CGTACCAGGC CACGCACCCTCGCGCACACGCA GG chr19:28427436-28427936 + 1 6.29e-07 . cacacccattctccaacatgca gagccacaca chr19:17246141-17246641 + 79 6.29e-07 ACACGCGCGC GCGAGACAGACAGacacacaca chr14:19374373-19374873 - 62 9.55e-07 GACATCACCA CATGGACACACTGTCACACTAC CACAGGGACA chr1:27528322-27528822 - 14 1.43e-06 CTCGTACAGA CACAGATACAGAGGCACAGGTA CGCTCGGTTA chr1:94022047-94022547 - 32 1.54e-06 AGCTAGCAGC CATGCAAAGGCAGAGACATGCA GGCAGTCTGG chr10:46525211-46525711 + 7 2.27e-06 ataact cacaccctctatactacacata ccccacacac chr7:150003326-150003826 - 51 2.27e-06 GATAACATAC CACACACTACATACCACATGTA CCACACACAA chr1:228867808-228868308 - 34 3.79e-06 CCACAGAAAT CACAGCGAGCCTATCACATAAA CACAGCATGG chr5:171493868-171494368 + 2 4.07e-06 a cacaacacaacacacacacgcc agggagcaca chr16:85245683-85246183 - 74 4.07e-06 ACCCA GACAGCCCCCCACACACACACG CCCTGCTCCC chr3:14403086-14403586 - 34 5.02e-06 CACAAACGGG GACACACAAGAGCACACATCCA AAGACAGCAC chr17:8118298-8118798 + 58 8.05e-06 TCATAAATCA CACGTGACTGCAGCCACACGCA GGTGAGTCGC chrUn_KI270467v1:3138-36 + 62 9.78e-06 tttgatattt tatggacagtatataatacaca gtttgggtac chr12:111599637-11160013 - 73 1.26e-05 GTGCTT TACACGTAGCAAGACACATTCT CCGCCCCAAG chrUn_KI270467v1:2090-25 + 65 1.34e-05 tttgatatat tatgtacagtatataatataca gtttgggtac chr16:2027327-2027827 - 63 1.42e-05 GCTGACCCCA AAGGGACCTGCATACACACGCC CAGCTGTGTT chr4:49709150-49709650 - 29 2.29e-05 TTTGATATTT TATGTACAGTATATAATACATA CTTTGGGTAC chrUn_KI270467v1:2926-34 + 23 3.39e-05 tttgatattt tatgtacagtatgtaatatata ttttgagtat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:37701159-37701659 8.1e-14 50_[-2]_28 chr7:100478129-100478629 8.1e-14 44_[-2]_34 chr6:166008638-166009138 1.8e-12 77_[-2]_1 chr12:580706-581206 4.4e-12 18_[-2]_60 chr8:37513911-37514411 1e-11 59_[+2]_19 chr10:122703391-12270389 2.2e-11 17_[+2]_61 chr15:66932591-66933091 4.5e-11 49_[+2]_29 chr1:10793941-10794441 6.4e-11 8_[-2]_70 chr17:15465225-15465725 7.6e-11 64_[+2]_14 chr18:63198247-63198747 1.2e-10 41_[+2]_37 chr19:33273953-33274453 1.7e-10 73_[-2]_5 chr8:37785267-37785767 3.7e-10 58_[+2]_20 chr7:100650171-100650671 3.7e-10 3_[+2]_75 chr7:104932901-104933401 5e-10 73_[+2]_5 chr19:33249636-33250136 5e-10 12_[+2]_66 chr17:82281389-82281889 5.8e-10 64_[-2]_14 chr8:142816933-142817433 7.8e-10 32_[+2]_46 chrX:118218024-118218524 8.9e-10 17_[-2]_61 chr12:5796193-5796693 1.2e-09 71_[+2]_7 chr2:234969697-234970197 1.4e-09 22_[+2]_56 chr16:57628626-57629126 3e-09 20_[-2]_58 chr19:38111784-38112284 3.9e-09 68_[+2]_10 chr15:70530162-70530662 6.4e-09 26_[+2]_52 chr12:6778630-6779130 8.1e-09 52_[+2]_26 chr2:172098537-172099037 1e-08 63_[-2]_15 chr16:85522838-85523338 1.2e-08 62_[-2]_16 chr17:44590595-44591095 1.8e-08 34_[-2]_44 chr16:75233826-75234326 2.1e-08 47_[+2]_31 chr6:150016345-150016845 2.6e-08 2_[+2]_76 chr18:49019533-49020033 4e-08 78_[-2] chr19:12984352-12984852 4e-08 51_[-2]_27 chr8:28254105-28254605 4.4e-08 41_[+2]_37 chr19:30375663-30376163 4.9e-08 59_[-2]_19 chr16:11171687-11172187 5.4e-08 67_[+2]_11 chr1:21651290-21651790 6e-08 51_[+2]_27 chr19:36528838-36529338 6e-08 66_[-2]_12 chr19:2524521-2525021 7.4e-08 73_[-2]_5 chr19:39157985-39158485 7.4e-08 8_[-2]_70 chr19:36214000-36214500 1.5e-07 1_[+2]_77 chr5:10548560-10549060 1.6e-07 58_[-2]_20 chr1:47591840-47592340 1.8e-07 76_[-2]_2 chr9:129607281-129607781 2.6e-07 23_[-2]_55 chr8:28401254-28401754 2.8e-07 41_[-2]_37 chr19:36488778-36489278 4.5e-07 78_[+2] chr19:33778321-33778821 4.5e-07 43_[+2]_35 chr1:3321686-3322186 5.3e-07 64_[-2]_14 chr14:102776614-10277711 5.8e-07 2_[-2]_76 chr19:28427436-28427936 6.3e-07 [+2]_78 chr19:17246141-17246641 6.3e-07 78_[+2] chr14:19374373-19374873 9.6e-07 61_[-2]_17 chr1:27528322-27528822 1.4e-06 13_[-2]_65 chr1:94022047-94022547 1.5e-06 31_[-2]_47 chr10:46525211-46525711 2.3e-06 6_[+2]_72 chr7:150003326-150003826 2.3e-06 50_[-2]_28 chr1:228867808-228868308 3.8e-06 33_[-2]_45 chr5:171493868-171494368 4.1e-06 1_[+2]_77 chr16:85245683-85246183 4.1e-06 73_[-2]_5 chr3:14403086-14403586 5e-06 33_[-2]_45 chr17:8118298-8118798 8e-06 57_[+2]_21 chrUn_KI270467v1:3138-36 9.8e-06 61_[+2]_17 chr12:111599637-11160013 1.3e-05 72_[-2]_6 chrUn_KI270467v1:2090-25 1.3e-05 64_[+2]_14 chr16:2027327-2027827 1.4e-05 62_[-2]_16 chr4:49709150-49709650 2.3e-05 28_[-2]_50 chrUn_KI270467v1:2926-34 3.4e-05 22_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACASACACACANRCACACRCA width=22 seqs=65 chr8:37701159-37701659 ( 51) CACACACACACAAACACACACA 1 chr7:100478129-100478629 ( 45) CACACACACACACACACACACA 1 chr6:166008638-166009138 ( 78) CACATACACACATGCACACACA 1 chr12:580706-581206 ( 19) CACAGACACACAGGCACACACA 1 chr8:37513911-37514411 ( 60) CACAGATACACAGACACACACA 1 chr10:122703391-12270389 ( 18) CATACATACACATACACATACA 1 chr15:66932591-66933091 ( 50) CACACACATGCATTCACACACA 1 chr1:10793941-10794441 ( 9) CACATACAAACACGCACACACA 1 chr17:15465225-15465725 ( 65) CATACAAACACAGACACACACA 1 chr18:63198247-63198747 ( 42) CACAGACACACATTGACACACA 1 chr19:33273953-33274453 ( 74) CACACCCACACAGACACACGCA 1 chr8:37785267-37785767 ( 59) TACACACACATATGCACATACA 1 chr7:100650171-100650671 ( 4) CACACATAAACACACACATGCA 1 chr7:104932901-104933401 ( 74) CACACATATACACATACACGCA 1 chr19:33249636-33250136 ( 13) CACAGACACACAGATACACACC 1 chr17:82281389-82281889 ( 65) CACAGGCACACATGCACACATA 1 chr8:142816933-142817433 ( 33) CACATGCACACATGTACACACA 1 chrX:118218024-118218524 ( 18) CACATACATGCACACATACACA 1 chr12:5796193-5796693 ( 72) CACATACACACACACAAACTCA 1 chr2:234969697-234970197 ( 23) CACACACACATTTGCATACACA 1 chr16:57628626-57629126 ( 21) CACACTCACACTCTCACACTCA 1 chr19:38111784-38112284 ( 69) CACACACACGTATGCACACACC 1 chr15:70530162-70530662 ( 27) CACAGACACACAGATACACAAC 1 chr12:6778630-6779130 ( 53) CACACACATGCACACACACGCG 1 chr2:172098537-172099037 ( 64) CACACTCTCACAGTCACACTCA 1 chr16:85522838-85523338 ( 63) CACACAACCACAACCACACGCA 1 chr17:44590595-44591095 ( 35) AATACACACACATGCACACACT 1 chr16:75233826-75234326 ( 48) CACACACACACTAGCACACGTG 1 chr6:150016345-150016845 ( 3) CAGACACAGCCATGCACATACA 1 chr18:49019533-49020033 ( 79) CACATGCTCATTCACACACGCA 1 chr19:12984352-12984852 ( 52) CACAAACTCACAATCACACCCA 1 chr8:28254105-28254605 ( 42) AACATGCATGCATGCACACACA 1 chr19:30375663-30376163 ( 60) CACAGGCACATGAGCACACACA 1 chr16:11171687-11172187 ( 68) CATAGTCACACTCCCACACATA 1 chr1:21651290-21651790 ( 52) CACACATGCACATGGACACGCA 1 chr19:36528838-36529338 ( 67) CACAGAGTTACAATCACACACC 1 chr19:2524521-2525021 ( 74) CACACACCCATAGTGACATGCA 1 chr19:39157985-39158485 ( 9) CCCACACATGCACATACATGCA 1 chr19:36214000-36214500 ( 2) CACACAGTCACAGGCACAGGCA 1 chr5:10548560-10549060 ( 59) GACACACATGCTAACACATGCC 1 chr1:47591840-47592340 ( 77) CACAGACCCACACGCACATTAC 1 chr9:129607281-129607781 ( 24) CCAAGATAGACACACACACACA 1 chr8:28401254-28401754 ( 42) CACACGTGCGCATACACACGTA 1 chr19:36488778-36489278 ( 79) CACAGTCACGATCACACATTAA 1 chr19:33778321-33778821 ( 44) CACACGCGCAAACACAAATGCA 1 chr1:3321686-3322186 ( 65) TATACAGTCTCATGTACATACA 1 chr14:102776614-10277711 ( 3) CACGCACCCTCGCGCACACGCA 1 chr19:28427436-28427936 ( 1) CACACCCATTCTCCAACATGCA 1 chr19:17246141-17246641 ( 79) GCGAGACAGACAGACACACACA 1 chr14:19374373-19374873 ( 62) CATGGACACACTGTCACACTAC 1 chr1:27528322-27528822 ( 14) CACAGATACAGAGGCACAGGTA 1 chr1:94022047-94022547 ( 32) CATGCAAAGGCAGAGACATGCA 1 chr10:46525211-46525711 ( 7) CACACCCTCTATACTACACATA 1 chr7:150003326-150003826 ( 51) CACACACTACATACCACATGTA 1 chr1:228867808-228868308 ( 34) CACAGCGAGCCTATCACATAAA 1 chr5:171493868-171494368 ( 2) CACAACACAACACACACACGCC 1 chr16:85245683-85246183 ( 74) GACAGCCCCCCACACACACACG 1 chr3:14403086-14403586 ( 34) GACACACAAGAGCACACATCCA 1 chr17:8118298-8118798 ( 58) CACGTGACTGCAGCCACACGCA 1 chrUn_KI270467v1:3138-36 ( 62) TATGGACAGTATATAATACACA 1 chr12:111599637-11160013 ( 73) TACACGTAGCAAGACACATTCT 1 chrUn_KI270467v1:2090-25 ( 65) TATGTACAGTATATAATATACA 1 chr16:2027327-2027827 ( 63) AAGGGACCTGCATACACACGCC 1 chr4:49709150-49709650 ( 29) TATGTACAGTATATAATACATA 1 chrUn_KI270467v1:2926-34 ( 23) TATGTACAGTATGTAATATATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.2609 E= 9.9e-124 -210 138 -230 -88 227 -271 -1267 -1267 -368 135 -271 -22 212 -1267 -113 -1267 -268 75 -5 -22 184 -171 -113 -168 -136 126 -230 -51 184 -130 -271 -68 -136 99 -97 -22 160 -197 -60 -68 -36 129 -429 -110 184 -1267 -271 32 2 3 -30 32 107 -171 -5 2 -136 132 -230 -88 234 -1267 -1267 -1267 -268 154 -1267 -110 234 -1267 -1267 -1267 -1267 116 -329 56 140 -329 16 -88 -136 138 -1267 -51 199 -113 -271 -268 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 65 E= 9.9e-124 0.046154 0.784615 0.061538 0.107692 0.953846 0.046154 0.000000 0.000000 0.015385 0.769231 0.046154 0.169231 0.861538 0.000000 0.138462 0.000000 0.030769 0.507692 0.292308 0.169231 0.707692 0.092308 0.138462 0.061538 0.076923 0.723077 0.061538 0.138462 0.707692 0.123077 0.046154 0.123077 0.076923 0.600000 0.153846 0.169231 0.600000 0.076923 0.200000 0.123077 0.153846 0.738462 0.015385 0.092308 0.707692 0.000000 0.046154 0.246154 0.200000 0.307692 0.246154 0.246154 0.415385 0.092308 0.292308 0.200000 0.076923 0.753846 0.061538 0.107692 1.000000 0.000000 0.000000 0.000000 0.030769 0.876923 0.000000 0.092308 1.000000 0.000000 0.000000 0.000000 0.000000 0.676923 0.030769 0.292308 0.523077 0.030769 0.338462 0.107692 0.076923 0.784615 0.000000 0.138462 0.784615 0.138462 0.046154 0.030769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACASACACACANRCACACRCA MEME-2 regular expression -------------------------------------------------------------------------------- CACA[CG]ACAC[AG]C[AT][CGTA][AGT]CACA[CT][AG]CA -------------------------------------------------------------------------------- Time 924.50 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 width = 43 sites = 17 llr = 668 E-value = 1.1e-134 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 42:5:16::1:14::6::1:16:15:16:12::1:24::41:2 pos.-specific C 1::::11::11::::1::1::1::2::1::1::11:2::1:11 probability G 5:951812a8:95:a4:98:93:92191:97:a8184295186 matrix T :8119118:19:1a::a1:a::a:1911a:1a:19::81:91: bits 2.3 * * * * * * 2.1 * * * * * * 1.9 * * * * * * * 1.6 * * ** * ** * * * * * ** * * Relative 1.4 ** * ** * ** ** ** ** * ** ** * ** * Entropy 1.2 ** * ** ** ** ** ** ** ** ** ** ** ** * (56.7 bits) 0.9 ** * ***** *********** ** ** ** ** ** ** 0.7 *********************** *********** ** *** 0.5 ************************ ****************** 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GTGATGATGGTGGTGATGGTGATGATGATGGTGGTGATGGTGG consensus A G A G G C AGG A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr16:89068627-89069127 + 55 1.44e-25 gatggtggtg atgatgatggtggtgatggtgatgatgatggtggtgatggtga tga chr16:86588029-86588529 - 4 1.07e-22 GATGGTGATG GTGGTGAGGGTGATGATGGTGATGATGATGATGGTGATGATGA TGG chr16:85823166-85823666 - 1 1.67e-22 GATGTTGATG GTGATGATGATGTTGATGGTGATGATGATGATGGTGATGATGG chr19:30435112-30435612 + 14 2.58e-22 gatggtggtg atgatgatggtgatggtggtgatgctgatgctggtgatggtgg tgatgatgat chr17:81531588-81532088 + 7 5.96e-22 gtgatg atgataatggtgatgatggtggtggtgatggtggtggtggtga tggtggtgat chr17:81253420-81253920 - 11 1.51e-21 GGTAGGGATG GAGATGATGGTGATGATGGTGATGTTGATGGTGGTAGGGATGG AGATGATGGT chr5:176591612-176592112 + 42 5.94e-21 tgttggtgtt gaggtgatggtgatggttgtgatggtgatggtggtgatgatgg tgttggtgtt chr12:131540125-13154062 + 4 1.52e-20 gcg atgatgatggtagtgatggtgatgatggtaatggtggtggtgg tggtgatgtt chr22:39565423-39565923 + 7 2.38e-20 atgatg atggtgttggtggtggtggtgatgatgttggtgttagtgatgg cgatggtggt chr19:30338103-30338603 + 47 4.13e-20 agtaatgatg gtggtgatggcgatgatggtgataataatggtggtgatgatgg tggtgatgat chr12:115177837-11517833 - 4 3.21e-19 CGTGATGATG ATGGTTATGGTGGTGATGATGATGGTTATGGTGGTAATGATGC TGA chr4:1514078-1514578 + 42 6.25e-19 gacgttggta atgatggtggtagtgatggtagtgatgatggtgatggtggttg atggtgatgg chr18:57436019-57436519 - 7 2.63e-18 ACAGGCGCTG GTGGTGGTGGTGGTGGTGGTGGTGCGGATGGTGGTGCGGGTGA GGGTGG chr14:100239204-10023970 - 47 1.71e-16 GCAGAGCGAT CATGGGCGGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGG CCGGCGTGCC chr6:156777902-156778402 - 58 1.67e-14 . GTGGGCATGGTGGTGGTGGTGGTGCTGCTGGTGGGGCGGCGCG GCGGGGGCTT chr17:81424567-81425067 + 45 1.65e-13 ATAGTGCTGG GTGATATGGTTGGTGATGATGATGTGGTTGGTGACAGGTGATG TGGTTGGTGG chr16:67842641-67843141 - 22 2.78e-13 GCTGCTGCTG CTGTTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGC CTGCGGCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89068627-89069127 1.4e-25 54_[+3]_3 chr16:86588029-86588529 1.1e-22 3_[-3]_54 chr16:85823166-85823666 1.7e-22 [-3]_57 chr19:30435112-30435612 2.6e-22 13_[+3]_44 chr17:81531588-81532088 6e-22 6_[+3]_51 chr17:81253420-81253920 1.5e-21 10_[-3]_47 chr5:176591612-176592112 5.9e-21 41_[+3]_16 chr12:131540125-13154062 1.5e-20 3_[+3]_54 chr22:39565423-39565923 2.4e-20 6_[+3]_51 chr19:30338103-30338603 4.1e-20 46_[+3]_11 chr12:115177837-11517833 3.2e-19 3_[-3]_54 chr4:1514078-1514578 6.2e-19 41_[+3]_16 chr18:57436019-57436519 2.6e-18 6_[-3]_51 chr14:100239204-10023970 1.7e-16 46_[-3]_11 chr6:156777902-156778402 1.7e-14 57_[-3] chr17:81424567-81425067 1.7e-13 44_[+3]_13 chr16:67842641-67843141 2.8e-13 21_[-3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG width=43 seqs=17 chr16:89068627-89069127 ( 55) ATGATGATGGTGGTGATGGTGATGATGATGGTGGTGATGGTGA 1 chr16:86588029-86588529 ( 4) GTGGTGAGGGTGATGATGGTGATGATGATGATGGTGATGATGA 1 chr16:85823166-85823666 ( 1) GTGATGATGATGTTGATGGTGATGATGATGATGGTGATGATGG 1 chr19:30435112-30435612 ( 14) ATGATGATGGTGATGGTGGTGATGCTGATGCTGGTGATGGTGG 1 chr17:81531588-81532088 ( 7) ATGATAATGGTGATGATGGTGGTGGTGATGGTGGTGGTGGTGA 1 chr17:81253420-81253920 ( 11) GAGATGATGGTGATGATGGTGATGTTGATGGTGGTAGGGATGG 1 chr5:176591612-176592112 ( 42) GAGGTGATGGTGATGGTTGTGATGGTGATGGTGGTGATGATGG 1 chr12:131540125-13154062 ( 4) ATGATGATGGTAGTGATGGTGATGATGGTAATGGTGGTGGTGG 1 chr22:39565423-39565923 ( 7) ATGGTGTTGGTGGTGGTGGTGATGATGTTGGTGTTAGTGATGG 1 chr19:30338103-30338603 ( 47) GTGGTGATGGCGATGATGGTGATAATAATGGTGGTGATGATGG 1 chr12:115177837-11517833 ( 4) ATGGTTATGGTGGTGATGATGATGGTTATGGTGGTAATGATGC 1 chr4:1514078-1514578 ( 42) ATGATGGTGGTAGTGATGGTAGTGATGATGGTGATGGTGGTTG 1 chr18:57436019-57436519 ( 7) GTGGTGGTGGTGGTGGTGGTGGTGCGGATGGTGGTGCGGGTGA 1 chr14:100239204-10023970 ( 47) CATGGGCGGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGG 1 chr6:156777902-156778402 ( 58) GTGGGCATGGTGGTGGTGGTGGTGCTGCTGGTGGGGCGGCGCG 1 chr17:81424567-81425067 ( 45) GTGATATGGTTGGTGATGATGATGTGGTTGGTGACAGGTGATG 1 chr16:67842641-67843141 ( 22) CTGTTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 12.3641 E= 1.1e-134 106 -136 64 -1073 -16 -1073 -1073 206 -1073 -1073 164 -175 125 -1073 64 -175 -1073 -1073 -136 216 -75 -236 134 -175 171 -136 -136 -75 -1073 -1073 -78 206 -1073 -1073 173 -1073 -175 -236 145 -175 -1073 -236 -1073 225 -75 -1073 154 -1073 84 -1073 81 -75 -1073 -1073 -1073 234 -1073 -1073 173 -1073 157 -236 22 -1073 -1073 -1073 -1073 234 -1073 -1073 164 -175 -75 -236 145 -1073 -1073 -1073 -1073 234 -175 -1073 164 -1073 171 -236 -4 -1073 -1073 -1073 -1073 234 -175 -1073 164 -1073 125 -36 -78 -75 -1073 -1073 -136 216 -175 -1073 154 -175 171 -136 -136 -75 -1073 -1073 -1073 234 -175 -1073 164 -1073 -16 -236 122 -175 -1073 -1073 -1073 234 -1073 -1073 173 -1073 -75 -236 134 -175 -1073 -236 -236 216 25 -1073 134 -1073 106 -78 45 -1073 -1073 -1073 -36 195 -1073 -1073 164 -175 106 -136 64 -1073 -175 -1073 -236 216 -1073 -236 145 -75 25 -136 110 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 17 E= 1.1e-134 0.411765 0.117647 0.470588 0.000000 0.176471 0.000000 0.000000 0.823529 0.000000 0.000000 0.941176 0.058824 0.470588 0.000000 0.470588 0.058824 0.000000 0.000000 0.117647 0.882353 0.117647 0.058824 0.764706 0.058824 0.647059 0.117647 0.117647 0.117647 0.000000 0.000000 0.176471 0.823529 0.000000 0.000000 1.000000 0.000000 0.058824 0.058824 0.823529 0.058824 0.000000 0.058824 0.000000 0.941176 0.117647 0.000000 0.882353 0.000000 0.352941 0.000000 0.529412 0.117647 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.588235 0.058824 0.352941 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.941176 0.058824 0.117647 0.058824 0.823529 0.000000 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.941176 0.000000 0.647059 0.058824 0.294118 0.000000 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.941176 0.000000 0.470588 0.235294 0.176471 0.117647 0.000000 0.000000 0.117647 0.882353 0.058824 0.000000 0.882353 0.058824 0.647059 0.117647 0.117647 0.117647 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.941176 0.000000 0.176471 0.058824 0.705882 0.058824 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.117647 0.058824 0.764706 0.058824 0.000000 0.058824 0.058824 0.882353 0.235294 0.000000 0.764706 0.000000 0.411765 0.176471 0.411765 0.000000 0.000000 0.000000 0.235294 0.764706 0.000000 0.000000 0.941176 0.058824 0.411765 0.117647 0.470588 0.000000 0.058824 0.000000 0.058824 0.882353 0.000000 0.058824 0.823529 0.117647 0.235294 0.117647 0.647059 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGRTGATGGTGRTGRTGGTGATGMTGATGGTGGTGRTGRTGG MEME-3 regular expression -------------------------------------------------------------------------------- [GA]TG[AG]TGATGGTG[GA]TG[AG]TGGTG[AG]TG[AC]TGATGGTGGT[GA][AG][TG]G[GA]TG[GA] -------------------------------------------------------------------------------- Time 1282.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:27800315-27800815 9.91e-01 100 chr21:31557556-31558056 5.82e-01 100 chr20:62386422-62386922 4.80e-01 100 chr8:142816933-142817433 1.81e-13 32_[+2(7.75e-10)]_4_[-1(5.33e-11)]_\ 20 chr16:25111858-25112358 9.81e-01 100 chr5:1801231-1801731 4.98e-01 100 chr16:75266060-75266560 9.85e-01 100 chr6:31827688-31828188 7.42e-01 100 chr6:31403577-31404077 9.84e-01 100 chr1:6486219-6486719 1.09e-01 100 chr12:52372872-52373372 5.13e-01 100 chr6:32972727-32973227 3.66e-01 100 chr1:211578077-211578577 9.78e-01 100 chr22:21937933-21938433 9.42e-01 100 chr18:63366597-63367097 6.27e-01 100 chr7:100650171-100650671 5.68e-15 3_[+2(3.73e-10)]_25_[-1(8.35e-11)]_\ [+2(3.41e-07)]_6 chr4:4541812-4542312 4.76e-01 100 chr1:16545745-16546245 1.71e-01 100 chr3:12795955-12796455 8.89e-01 100 chr19:29942641-29943141 1.94e-01 100 chr5:180810214-180810714 8.44e-01 100 chr6:42960854-42961354 5.18e-01 100 chr15:66932591-66933091 4.67e-13 3_[-1(1.74e-09)]_2_[+2(1.95e-06)]_\ [+2(4.52e-11)]_6_[-1(1.73e-07)]_1 chr12:109879794-10988029 1.97e-02 100 chr1:225423318-225423818 1.61e-01 100 chr6:27133074-27133574 1.24e-01 100 chr12:5865357-5865857 6.27e-04 4_[-1(2.55e-05)]_10_[-1(8.53e-06)]_\ 10_[-1(1.06e-05)]_10 chr14:100472145-10047264 1.98e-01 100 chr17:31008667-31009167 4.44e-01 100 chr10:102133109-10213360 6.68e-01 100 chr10:13587859-13588359 9.78e-01 100 chr17:47280346-47280846 2.29e-01 100 chr1:11736190-11736690 2.70e-01 100 chr11:119094951-11909545 7.33e-01 100 chr5:856472-856972 7.53e-05 42_[-1(1.39e-05)]_36 chr1:44842732-44843232 9.73e-01 100 chr18:33577680-33578180 5.39e-06 5_[+1(7.16e-08)]_73 chr16:181176-181676 9.36e-01 100 chr17:74972986-74973486 9.27e-01 100 chr1:228109594-228110094 7.67e-01 100 chr17:45293510-45294010 4.97e-01 100 chr16:323566-324066 6.40e-22 10_[-1(3.49e-14)]_[-1(6.22e-07)]_46 chr16:75148382-75148882 1.00e+00 100 chr19:10416569-10417069 7.62e-01 100 chr12:57220655-57221155 4.55e-01 100 chr18:2656035-2656535 1.02e-03 [+1(8.53e-06)]_78 chr10:1056978-1057478 5.42e-01 100 chr4:1514078-1514578 1.22e-14 41_[+3(6.25e-19)]_16 chr1:224013060-224013560 2.67e-01 100 chr16:2182127-2182627 1.36e-02 100 chr19:37654784-37655284 1.07e-01 100 chr17:81531588-81532088 3.82e-17 6_[+3(5.96e-22)]_2_[+3(4.38e-18)]_6 chr16:29264063-29264563 5.46e-01 100 chr16:56519520-56520020 5.05e-01 100 chr14:28768105-28768605 3.45e-01 100 chr9:129607281-129607781 4.45e-22 1_[+1(3.49e-14)]_[-2(2.60e-07)]_5_\ [-3(3.29e-05)]_7 chr19:39412646-39413146 9.97e-01 100 chr15:65610773-65611273 1.84e-01 100 chr10:104254925-10425542 9.99e-01 100 chr12:2812926-2813426 8.24e-01 100 chr6:17281613-17282113 3.69e-01 100 chr14:21070396-21070896 2.93e-02 100 chr2:234969697-234970197 1.96e-16 6_[+2(1.35e-09)]_[+2(1.80e-06)]_12_\ [+2(5.47e-12)]_16 chr1:155562995-155563495 9.41e-01 100 chr19:44215507-44216007 4.38e-01 100 chr1:47591840-47592340 1.15e-10 7_[+1(9.20e-05)]_17_[-2(8.13e-09)]_\ 8_[-2(1.79e-07)]_2 chrX:153382858-153383358 2.76e-06 64_[-1(2.18e-06)]_14 chr1:223748855-223749355 5.97e-01 100 chr16:75516814-75517314 9.93e-01 100 chr18:11688922-11689422 9.23e-01 100 chr7:116592551-116593051 6.20e-01 100 chr19:30338103-30338603 2.44e-15 46_[+3(4.13e-20)]_11 chr1:27528322-27528822 6.86e-09 13_[-2(1.43e-06)]_15_[+1(5.86e-09)]_\ 28 chr6:1810301-1810801 3.97e-01 100 chr19:36528838-36529338 2.50e-08 16_[+1(2.30e-07)]_28_[-2(6.03e-08)]_\ 12 chr6:30325924-30326424 5.73e-01 100 chr16:86588029-86588529 9.00e-18 3_[-3(1.07e-22)]_5_[-3(4.23e-17)]_6 chr19:34676967-34677467 8.93e-01 100 chr9:137046147-137046647 9.42e-01 100 chr1:10471917-10472417 1.93e-01 100 chr16:11171687-11172187 1.34e-14 11_[+2(4.68e-06)]_2_[+2(1.00e-11)]_\ 10_[+2(5.44e-08)]_11 chr16:86932262-86932762 3.32e-03 100 chr15:67840386-67840886 5.42e-02 100 chr1:42958462-42958962 2.91e-01 100 chr19:40190906-40191406 7.05e-01 100 chr19:34359712-34360212 5.19e-01 100 chr6:170398613-170399113 5.18e-01 100 chr19:7534854-7535354 2.82e-01 100 chr1:226309344-226309844 2.32e-03 60_[-1(1.30e-05)]_18 chr1:220046068-220046568 7.91e-01 100 chr17:44087285-44087785 4.14e-03 8_[-3(1.97e-06)]_49 chr19:38005206-38005706 4.92e-01 100 chr1:43946611-43947111 9.06e-01 100 chr1:16625481-16625981 4.12e-02 100 chr17:42676503-42677003 7.17e-01 100 chr17:45783194-45783694 9.43e-01 100 chr10:87504916-87505416 8.56e-02 100 chr1:234554408-234554908 2.13e-01 100 chr16:70346790-70347290 9.64e-01 100 chr1:235011937-235012437 4.95e-02 100 chr16:31179920-31180420 4.02e-03 69_[+1(6.88e-05)]_9 chr1:236065433-236065933 6.12e-01 100 chrX:73563413-73563913 1.36e-02 100 chr19:12984352-12984852 5.87e-15 3_[+1(3.39e-11)]_2_[+1(8.53e-06)]_2_\ [-2(3.97e-08)]_27 chr19:29662801-29663301 8.48e-01 100 chr19:6198922-6199422 3.37e-01 100 chr6:89411479-89411979 2.81e-01 100 chr16:528304-528804 3.89e-01 100 chr19:38111784-38112284 8.08e-13 13_[-1(5.38e-10)]_33_[+2(3.88e-09)]_\ 10 chr17:782077-782577 9.20e-01 100 chr1:24111881-24112381 8.32e-01 100 chr19:29810997-29811497 6.44e-01 100 chr19:6229582-6230082 1.40e-06 26_[+2(9.74e-05)]_1_[-1(2.56e-06)]_\ 2_[-1(3.09e-05)]_5 chr17:27353409-27353909 8.69e-01 100 chrX:53422961-53423461 1.10e-01 100 chr19:39132622-39133122 3.84e-01 100 chr11:73376983-73377483 6.31e-10 48_[+1(7.73e-05)]_7_[+1(3.13e-08)]_\ 1 chr22:39565423-39565923 4.56e-17 6_[+3(2.38e-20)]_2_[+3(2.14e-14)]_6 chr16:30761440-30761940 8.44e-02 100 chr19:34057085-34057585 2.02e-02 100 chr15:72230501-72231001 8.55e-01 100 chr17:7484171-7484671 9.96e-01 100 chr16:2340963-2341463 9.94e-01 100 chr17:15465225-15465725 7.98e-17 16_[-1(1.54e-10)]_26_[+2(7.58e-11)]_\ 14 chr16:85245683-85246183 5.18e-08 12_[+1(9.66e-08)]_[+1(3.98e-05)]_17_\ [-2(4.07e-06)]_5 chr17:44590595-44591095 6.20e-11 6_[+1(4.63e-09)]_6_[-2(1.84e-08)]_4_\ [-2(5.78e-07)]_18 chr1:94022047-94022547 4.37e-03 31_[-2(1.54e-06)]_47 chr16:4613493-4613993 9.27e-01 100 chr4:102827231-102827731 8.01e-01 100 chr15:72473770-72474270 9.49e-01 100 chr6:156777902-156778402 1.98e-11 57_[-3(1.67e-14)] chr17:59893160-59893660 4.13e-01 100 chr15:69452850-69453350 9.87e-01 100 chr10:119080181-11908068 4.28e-01 100 chr1:37859958-37860458 6.82e-01 100 chr16:71426208-71426708 6.96e-01 100 chr6:38702509-38703009 1.35e-03 17_[-1(5.92e-06)]_61 chr2:46616318-46616818 2.88e-01 100 chr10:69317870-69318370 1.04e-01 100 chr22:38504688-38505188 5.79e-01 100 chr6:31834912-31835412 8.10e-01 100 chr7:44795945-44796445 9.99e-01 100 chr17:2282691-2283191 5.12e-01 100 chr1:235505702-235506202 6.55e-01 100 chr1:3992120-3992620 2.36e-01 100 chr19:30067614-30068114 4.98e-02 100 chr19:35269745-35270245 2.21e-01 100 chr17:39401108-39401608 5.51e-02 100 chr3:62318713-62319213 5.09e-01 100 chr19:58002847-58003347 8.37e-01 100 chr15:75731125-75731625 2.66e-02 100 chr5:78360739-78361239 2.30e-01 100 chr5:34185466-34185966 8.54e-02 100 chr1:94418453-94418953 8.03e-01 100 chr2:90380623-90381123 8.97e-01 100 chr22:46335516-46336016 7.53e-01 100 chr16:636526-637026 8.66e-01 100 chr12:10722136-10722636 4.02e-01 100 chr19:40610303-40610803 1.80e-02 13_[-2(8.47e-05)]_65 chr19:4064525-4065025 9.00e-01 100 chr12:6904974-6905474 4.05e-01 100 chr6:27838524-27839024 5.32e-01 100 chr12:6767730-6768230 3.43e-02 55_[+1(9.74e-05)]_23 chr19:30682710-30683210 1.11e-01 100 chr7:131328022-131328522 1.27e-01 100 chr11:68903590-68904090 8.71e-01 100 chr19:39474361-39474861 1.75e-01 100 chr14:102776614-10277711 1.23e-09 2_[-2(5.78e-07)]_19_[+1(1.31e-08)]_\ 35 chr16:68264650-68265150 7.66e-04 31_[+1(2.23e-05)]_47 chr1:37473790-37474290 4.54e-01 100 chr12:12812867-12813367 4.12e-01 100 chr5:34007542-34008042 1.13e-01 100 chr6:19838702-19839202 1.11e-01 100 chr22:39145204-39145704 6.65e-01 100 chr20:62937310-62937810 8.73e-01 100 chr19:38234162-38234662 8.12e-01 100 chr6:150016345-150016845 6.62e-10 2_[+2(2.57e-08)]_6_[-1(1.04e-08)]_\ 48 chr17:46267245-46267745 3.85e-01 100 chr8:17412847-17413347 6.62e-01 100 chr5:179678780-179679280 9.36e-01 100 chr17:39401803-39402303 5.95e-02 100 chr19:38418078-38418578 7.80e-01 100 chrX:1391612-1392112 6.41e-01 100 chr5:171493868-171494368 3.22e-07 17_[-1(3.23e-06)]_21_[-1(1.73e-07)]_\ 18 chr1:240093244-240093744 9.92e-01 100 chr5:90473581-90474081 7.62e-01 100 chr12:101877704-10187820 4.79e-01 100 chr3:151085004-151085504 9.91e-01 100 chr16:30806051-30806551 7.20e-01 100 chr6:158644229-158644729 6.16e-01 100 chr22:27093398-27093898 1.46e-13 59_[-1(4.59e-11)]_19 chr22:20081114-20081614 8.30e-01 100 chr16:29613132-29613632 2.81e-01 100 chr8:27592167-27592667 7.88e-01 100 chr5:34189619-34190119 6.43e-02 100 chr8:28254105-28254605 4.88e-08 1_[-1(4.77e-07)]_18_[+2(4.41e-08)]_\ 37 chr9:129496159-129496659 8.82e-01 100 chr17:21457696-21458196 2.97e-02 100 chr5:10548560-10549060 3.36e-07 [+1(9.83e-06)]_12_[+1(1.23e-06)]_\ [+1(1.23e-06)]_[+1(1.23e-06)] chr16:57735892-57736392 5.38e-01 100 chr19:3210498-3210998 9.92e-02 100 chr7:139341202-139341702 9.88e-01 100 chr14:35533456-35533956 4.46e-01 100 chr1:228867808-228868308 2.70e-05 33_[-2(3.79e-06)]_[+3(2.08e-05)]_2 chr19:17246141-17246641 1.54e-03 78_[+2(6.29e-07)] chr9:137236837-137237337 9.62e-01 100 chr19:33065017-33065517 5.55e-01 100 chr22:17159405-17159905 9.55e-01 100 chr1:10793941-10794441 1.35e-20 8_[-2(6.38e-11)]_6_[+1(3.49e-14)]_\ 42 chr3:160756436-160756936 9.13e-01 100 chr15:84570917-84571417 5.43e-01 100 chr1:147599061-147599561 8.60e-01 100 chr17:4947953-4948453 6.26e-01 100 chr16:57802617-57803117 1.59e-06 53_[-1(3.64e-07)]_25 chr5:34192353-34192853 5.16e-01 100 chr22:50247612-50248112 4.40e-06 17_[-1(3.77e-06)]_61 chrX:118218024-118218524 6.80e-14 21_[-2(2.02e-10)]_12_[-2(3.21e-10)]_\ 23 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chr14:19374373-19374873 1.47e-08 2_[+1(1.64e-08)]_37_[-2(9.55e-07)]_\ 17 chr10:88880122-88880622 9.99e-01 100 chr21:36069965-36070465 1.44e-01 100 chr19:40349663-40350163 5.88e-01 100 chr17:58006925-58007425 6.80e-01 100 chr17:76736824-76737324 9.09e-01 100 chr19:39823962-39824462 1.06e-01 100 chr18:49019533-49020033 2.40e-10 17_[+1(1.06e-05)]_9_[+1(2.27e-08)]_\ 8_[-2(3.97e-08)] chr1:8026665-8027165 1.42e-03 3_[+1(4.39e-06)]_75 chr9:133030738-133031238 8.59e-01 100 chr18:63198247-63198747 6.47e-14 11_[-1(2.37e-10)]_8_[+2(1.25e-10)]_\ 2_[-1(3.95e-11)]_13 chr19:36488778-36489278 5.51e-05 37_[+2(2.43e-05)]_19_[+2(4.46e-07)] chr12:5796193-5796693 1.56e-15 7_[-1(4.76e-08)]_10_[-1(1.81e-11)]_\ 12_[-1(2.37e-10)]_5 chr1:163321554-163322054 9.64e-01 100 chr10:93209012-93209512 2.77e-02 40_[+3(2.46e-05)]_17 chr19:37371322-37371822 7.58e-10 32_[-2(5.64e-09)]_[-2(6.65e-05)]_24 chr1:225653510-225654010 9.29e-01 100 chr19:30435112-30435612 7.95e-18 13_[+3(2.58e-22)]_1_[+3(1.86e-05)] chr17:40140253-40140753 8.83e-01 100 chr12:57111934-57112434 3.98e-21 13_[-1(3.49e-14)]_4_[-1(2.01e-06)]_\ 39 chr1:92832044-92832544 6.88e-01 100 chr19:1383486-1383986 2.86e-01 100 chr21:36135193-36135693 7.80e-01 100 chr1:236097031-236097531 8.93e-01 100 chr18:50281096-50281596 8.86e-01 100 chr19:33273953-33274453 5.09e-21 47_[+1(3.49e-14)]_4_[-2(1.72e-10)]_\ 5 chr16:1271720-1272220 2.10e-01 100 chr12:2255729-2256229 8.26e-02 100 chr8:28401254-28401754 4.93e-09 8_[+1(1.17e-08)]_11_[-2(2.85e-07)]_\ 10_[+1(5.11e-06)]_5 chr19:36214000-36214500 2.87e-08 1_[+2(1.48e-07)]_20_[-1(1.18e-07)]_\ 35 chr4:49709150-49709650 1.15e-02 28_[-2(2.29e-05)]_20_[-2(2.29e-05)]_\ 8 chrUn_GL000216v2:243-743 3.50e-01 100 chr19:2524521-2525021 8.62e-09 9_[+1(3.48e-08)]_14_[+1(2.52e-07)]_\ 6_[-2(7.41e-08)]_5 chr19:43640045-43640545 3.81e-01 100 chr17:78558266-78558766 6.39e-01 100 chrUn_KI270467v1:2090-25 4.74e-03 64_[+2(1.34e-05)]_14 chrUn_KI270467v1:3138-36 7.73e-03 19_[+2(6.99e-05)]_20_[+2(9.78e-06)]_\ 17 chrUn_KI270467v1:2926-34 2.04e-03 22_[+2(3.39e-05)]_27_[-2(3.99e-05)]_\ 7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kadru ********************************************************************************